Query psy1782
Match_columns 90
No_of_seqs 114 out of 1178
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 23:51:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ynw_B Retinoic acid receptor 99.6 1.1E-16 3.9E-21 97.2 3.6 47 1-47 41-87 (99)
2 3cbb_A HNF-4-alpha, hepatocyte 99.6 1.7E-16 5.7E-21 92.7 3.6 41 1-41 38-78 (78)
3 1dsz_A RAR-alpha, retinoic aci 99.6 2.3E-16 7.9E-21 93.6 3.2 44 1-44 42-85 (86)
4 1dsz_B RXR-alpha, retinoic aci 99.6 3.3E-16 1.1E-20 92.8 3.8 42 1-42 43-84 (85)
5 2ebl_A COUP transcription fact 99.6 3.3E-16 1.1E-20 93.5 3.3 43 1-43 45-87 (89)
6 2han_A Protein ultraspiracle; 99.6 3.8E-16 1.3E-20 93.9 3.3 44 1-44 48-91 (93)
7 1a6y_A Orphan nuclear receptor 99.6 2.8E-16 9.5E-21 94.7 2.7 45 2-46 47-91 (94)
8 1hcq_A Protein (estrogen recep 99.6 1.4E-15 4.9E-20 89.9 3.3 41 1-41 42-82 (84)
9 1lo1_A Steroid hormone recepto 99.6 4.9E-16 1.7E-20 94.2 1.1 47 1-47 42-88 (98)
10 2a66_A Orphan nuclear receptor 99.6 3E-15 1E-19 92.8 4.3 45 1-45 47-91 (113)
11 1cit_A NGFI-B, protein (orphan 99.5 6.2E-15 2.1E-19 87.9 5.0 42 1-42 38-79 (89)
12 3g9m_A Glucocorticoid receptor 99.5 2E-15 6.8E-20 90.3 2.2 46 1-46 40-85 (90)
13 4hn5_A Glucocorticoid receptor 99.5 4.6E-15 1.6E-19 92.4 3.4 45 1-45 67-111 (117)
14 2han_B Ecdysone receptor; tran 99.5 4.7E-15 1.6E-19 92.7 2.2 44 1-44 46-89 (119)
15 2nll_B Protein (thyroid hormon 99.5 4.5E-15 1.5E-19 90.7 1.8 45 1-45 41-85 (103)
16 1kb2_A Vitamin D3 receptor; VD 99.5 1.2E-14 4.1E-19 89.7 3.1 42 1-42 44-85 (110)
17 1r4i_A Androgen receptor; AR, 99.4 4.8E-14 1.6E-18 86.4 3.4 41 1-41 45-85 (105)
18 3dzy_A Retinoic acid receptor 99.4 2.7E-13 9.3E-18 100.5 5.8 46 1-46 175-220 (467)
19 2lze_A A primordial catalytic 99.4 1.5E-13 5E-18 81.6 2.0 37 1-37 40-76 (87)
20 3dzy_D Peroxisome proliferator 99.3 2E-12 6.7E-17 94.7 5.0 42 5-46 91-132 (419)
21 1lbd_A RXR_LBD, retinoid X rec 97.9 3.1E-06 1.1E-10 58.4 0.9 51 23-73 12-64 (282)
22 1ei0_A P8MTCP1; helix-turn-hel 33.5 15 0.00053 17.6 0.9 11 19-29 6-16 (38)
23 1xdk_B RAR-beta, retinoic acid 29.5 11 0.00039 25.7 0.0 16 31-46 1-16 (303)
24 1hp8_A HU-P8; leukemia, cystei 24.3 27 0.00091 19.1 0.9 14 16-29 5-20 (68)
25 1ovl_A Orphan nuclear receptor 21.6 20 0.00067 23.9 0.0 15 31-45 1-15 (271)
No 1
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=99.63 E-value=1.1e-16 Score=97.17 Aligned_cols=47 Identities=47% Similarity=0.825 Sum_probs=35.8
Q ss_pred CCCCCCCceecCCCCCCCchhhhhHHHHhcCCcccccccccccccCC
Q psy1782 1 MYSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRR 47 (90)
Q Consensus 1 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~~~~~~ 47 (90)
.|..+++|.|++..|+.|++|||+|||++||++++||.+|++...+.
T Consensus 41 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~~~~~ 87 (99)
T 1ynw_B 41 TCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRN 87 (99)
T ss_dssp CCSSSSCCCCCSTTSSSCHHHHHHHHHHTTCCSTTCC----------
T ss_pred ccCCCCcccccccCCccCccccHHHHhHcCCCHHHhhhccccccccC
Confidence 48899999999999999999999999999999999999999876543
No 2
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=99.63 E-value=1.7e-16 Score=92.74 Aligned_cols=41 Identities=76% Similarity=1.176 Sum_probs=37.6
Q ss_pred CCCCCCCceecCCCCCCCchhhhhHHHHhcCCccccccccc
Q psy1782 1 MYSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41 (90)
Q Consensus 1 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~ 41 (90)
.|..+++|.|++..|+.|++|||+|||++||++++||.+|+
T Consensus 38 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~Rd 78 (78)
T 3cbb_A 38 SCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERD 78 (78)
T ss_dssp CCSSCSCCCCSTTTTTTCHHHHHHHHHHHTCCGGGCCCC--
T ss_pred ccccccccCcCccccccChhhhhHHHhHcCCCHHHccccCC
Confidence 48899999999999999999999999999999999999885
No 3
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=99.61 E-value=2.3e-16 Score=93.64 Aligned_cols=44 Identities=41% Similarity=0.896 Sum_probs=37.6
Q ss_pred CCCCCCCceecCCCCCCCchhhhhHHHHhcCCcccccccccccc
Q psy1782 1 MYSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRIS 44 (90)
Q Consensus 1 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~~~ 44 (90)
.|..+++|.|++..|+.|++|||+|||++||++++||.+|++.+
T Consensus 42 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~k 85 (86)
T 1dsz_A 42 TCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK 85 (86)
T ss_dssp CCSSCSCCCCSTTTGGGCHHHHHHHHHHTTCCGGGSCCC-----
T ss_pred eeccCCccccCccccccchhhhHHHHHHhCCCHHHhhhcccccc
Confidence 48899999999999999999999999999999999999998754
No 4
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=99.61 E-value=3.3e-16 Score=92.79 Aligned_cols=42 Identities=50% Similarity=0.943 Sum_probs=39.9
Q ss_pred CCCCCCCceecCCCCCCCchhhhhHHHHhcCCcccccccccc
Q psy1782 1 MYSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42 (90)
Q Consensus 1 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~ 42 (90)
.|..+++|.|++..|+.|++|||+|||++||++++||.+|++
T Consensus 43 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~ 84 (85)
T 1dsz_B 43 TCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQR 84 (85)
T ss_dssp CCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCCCCCC
T ss_pred eecccccccccccccccCcchhHHHHhHcCCCHHHhhcccCC
Confidence 488999999999999999999999999999999999999875
No 5
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=99.60 E-value=3.3e-16 Score=93.52 Aligned_cols=43 Identities=44% Similarity=0.797 Sum_probs=40.4
Q ss_pred CCCCCCCceecCCCCCCCchhhhhHHHHhcCCccccccccccc
Q psy1782 1 MYSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRI 43 (90)
Q Consensus 1 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~~ 43 (90)
.|..+++|.|++..|+.|++|||+|||++||++++||.+|++.
T Consensus 45 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~ 87 (89)
T 2ebl_A 45 TCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGSGPS 87 (89)
T ss_dssp CCSSCSCCCCCSSSSSCCSHHHHHHHHHHTCCHHHHSCSCCCC
T ss_pred ecccCccCCcCccCccccccchHHHhhhccCCHHHcccCCCCC
Confidence 4889999999999999999999999999999999999998864
No 6
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=99.60 E-value=3.8e-16 Score=93.94 Aligned_cols=44 Identities=45% Similarity=0.896 Sum_probs=38.6
Q ss_pred CCCCCCCceecCCCCCCCchhhhhHHHHhcCCcccccccccccc
Q psy1782 1 MYSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRIS 44 (90)
Q Consensus 1 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~~~ 44 (90)
.|..+++|.|++..|+.|++|||+|||++||++++||.+|++.+
T Consensus 48 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~~ 91 (93)
T 2han_A 48 ACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKREAVQEERQGIH 91 (93)
T ss_dssp CCSSCSCCCCSTTTGGGCHHHHHHHHHHHTCCGGGSCCCC----
T ss_pred CcCCCCcCCcCCCCCccCccccHHHHhHhCCCHHHhhhccCccc
Confidence 48899999999999999999999999999999999999998754
No 7
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=99.60 E-value=2.8e-16 Score=94.68 Aligned_cols=45 Identities=31% Similarity=0.527 Sum_probs=38.2
Q ss_pred CCCCCCceecCCCCCCCchhhhhHHHHhcCCcccccccccccccC
Q psy1782 2 YSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCR 46 (90)
Q Consensus 2 C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~~~~~ 46 (90)
|..+++|.|++..|+.|++|||+|||++||++++||.+|++...+
T Consensus 47 C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~~~k 91 (94)
T 1a6y_A 47 CLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREK 91 (94)
T ss_dssp CSSTTCCCCCTTTTTSCHHHHHHHHTTTTCCSTTCCCCC------
T ss_pred ccCCCCCccCccccccccchhHHHhhHccCCHHHhccCcCcCchh
Confidence 889999999999999999999999999999999999999876543
No 8
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=99.56 E-value=1.4e-15 Score=89.88 Aligned_cols=41 Identities=34% Similarity=0.835 Sum_probs=31.8
Q ss_pred CCCCCCCceecCCCCCCCchhhhhHHHHhcCCccccccccc
Q psy1782 1 MYSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41 (90)
Q Consensus 1 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~ 41 (90)
.|..+++|.|++..|+.|++|||+|||++||++++||.+|.
T Consensus 42 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 82 (84)
T 1hcq_A 42 MCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKDRR 82 (84)
T ss_dssp CCSSSSCCCCSTTTTTTCHHHHHHHHHHHTCCC--------
T ss_pred ccccCccCCcCCcCcccChhhhhHHHhHcCCCHHHhcccCC
Confidence 48899999999999999999999999999999999998875
No 9
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=99.56 E-value=4.9e-16 Score=94.22 Aligned_cols=47 Identities=30% Similarity=0.498 Sum_probs=42.8
Q ss_pred CCCCCCCceecCCCCCCCchhhhhHHHHhcCCcccccccccccccCC
Q psy1782 1 MYSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRR 47 (90)
Q Consensus 1 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~~~~~~ 47 (90)
.|..+++|.|++..|+.|++|||+|||++||++++||.+|+..++..
T Consensus 42 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~~r~k 88 (98)
T 1lo1_A 42 SCPATNECEITKRRRKSCQACRFMKALKVGMLKEGVRLDRVRGGRQK 88 (98)
T ss_dssp CCSSCSCCCCCHHHHHHCHHHHHHHHHHHTCCGGGSCSSCCTTCCCC
T ss_pred ccCccccccccccccccccchhHHHHhHcCCCHHHeecccccCcccc
Confidence 48899999999999999999999999999999999999998766544
No 10
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=99.55 E-value=3e-15 Score=92.77 Aligned_cols=45 Identities=38% Similarity=0.691 Sum_probs=41.6
Q ss_pred CCCCCCCceecCCCCCCCchhhhhHHHHhcCCccccccccccccc
Q psy1782 1 MYSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISC 45 (90)
Q Consensus 1 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~~~~ 45 (90)
.|..+++|.|++..|+.|++|||+|||+|||++++||.+|++.++
T Consensus 47 ~C~~~~~C~i~~~~R~~Cr~CR~~KCl~vGM~~~~vq~~R~~~~r 91 (113)
T 2a66_A 47 TCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGR 91 (113)
T ss_dssp CCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCTTCCCSSC
T ss_pred cccccccCCcCCCccccccchhHHHHhHhCCCHHHhccccccCCC
Confidence 488999999999999999999999999999999999999986554
No 11
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=99.54 E-value=6.2e-15 Score=87.94 Aligned_cols=42 Identities=36% Similarity=0.742 Sum_probs=39.0
Q ss_pred CCCCCCCceecCCCCCCCchhhhhHHHHhcCCcccccccccc
Q psy1782 1 MYSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42 (90)
Q Consensus 1 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~ 42 (90)
.|..+++|.|++..|+.|++|||+|||++||++++||.++..
T Consensus 38 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~~~~ 79 (89)
T 1cit_A 38 ICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLK 79 (89)
T ss_dssp CCSSSSCCCCSTTTTTTCHHHHHHHHHHTTCCGGGSCCGGGT
T ss_pred eeccCCccccCCCCcccChhhhhHHHhHcCCCHHHeeccccc
Confidence 488999999999999999999999999999999999987654
No 12
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=99.53 E-value=2e-15 Score=90.26 Aligned_cols=46 Identities=28% Similarity=0.598 Sum_probs=38.4
Q ss_pred CCCCCCCceecCCCCCCCchhhhhHHHHhcCCcccccccccccccC
Q psy1782 1 MYSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCR 46 (90)
Q Consensus 1 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~~~~~ 46 (90)
.|..+++|.|++..|+.|++|||+|||++||++++||.+|+....+
T Consensus 40 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~avq~~r~~~~~~ 85 (90)
T 3g9m_A 40 LCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIKGIQ 85 (90)
T ss_dssp CCSSSSCCCCCTTGGGTCHHHHHHHHHHHTCCTTHHHHHC------
T ss_pred eCCCCCccccCcccccCCcchhhHHHHHcCCCHHHhcccccccccc
Confidence 4888999999999999999999999999999999999998765543
No 13
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=99.52 E-value=4.6e-15 Score=92.45 Aligned_cols=45 Identities=29% Similarity=0.601 Sum_probs=33.8
Q ss_pred CCCCCCCceecCCCCCCCchhhhhHHHHhcCCccccccccccccc
Q psy1782 1 MYSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISC 45 (90)
Q Consensus 1 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~~~~ 45 (90)
.|.++++|.|++..|+.|++|||+|||++||++++||.+|+..+.
T Consensus 67 ~C~~~~~C~i~~~~r~~Cr~CRl~KCl~vGM~~~avq~kR~~k~~ 111 (117)
T 4hn5_A 67 LCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIKGI 111 (117)
T ss_dssp CCSSSSCCCCSTTTTTTCHHHHHHHHHHHTCCTTC----------
T ss_pred ecCCCCccccCcccccCCcccchHHHhHcCCCHHHhccccccccc
Confidence 488999999999999999999999999999999999998865443
No 14
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=99.50 E-value=4.7e-15 Score=92.67 Aligned_cols=44 Identities=32% Similarity=0.469 Sum_probs=40.6
Q ss_pred CCCCCCCceecCCCCCCCchhhhhHHHHhcCCcccccccccccc
Q psy1782 1 MYSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRIS 44 (90)
Q Consensus 1 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~~~ 44 (90)
.|..+++|.|++..|+.|++|||+|||++||++++||.+|+...
T Consensus 46 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r~~~~ 89 (119)
T 2han_B 46 CCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAM 89 (119)
T ss_dssp CCSSCSCCCCSTTGGGTCHHHHHHHHHHTTCCGGGSSCSSHHHH
T ss_pred ccccccccccCccccccchhhHHHHHHHhCCCHHHccchhhhhH
Confidence 48899999999999999999999999999999999999887643
No 15
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=99.50 E-value=4.5e-15 Score=90.68 Aligned_cols=45 Identities=36% Similarity=0.624 Sum_probs=41.2
Q ss_pred CCCCCCCceecCCCCCCCchhhhhHHHHhcCCccccccccccccc
Q psy1782 1 MYSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISC 45 (90)
Q Consensus 1 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~~~~ 45 (90)
.|..+++|.|++..|+.|++|||+|||++||++++||.+|....+
T Consensus 41 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~~~~~~k 85 (103)
T 2nll_B 41 SCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAK 85 (103)
T ss_dssp CCSSCTTCCCSTTTTTSCHHHHHHHHHHTTCCGGGSCCHHHHHHH
T ss_pred hhhccCCcCcCccCccccchhhhHhhhHhCCCHHHhhhhhhhHHh
Confidence 488999999999999999999999999999999999999876543
No 16
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=99.49 E-value=1.2e-14 Score=89.72 Aligned_cols=42 Identities=31% Similarity=0.584 Sum_probs=38.7
Q ss_pred CCCCCCCceecCCCCCCCchhhhhHHHHhcCCcccccccccc
Q psy1782 1 MYSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42 (90)
Q Consensus 1 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~ 42 (90)
.|..+++|.|++..|+.|++|||+|||++||++++|+.+|..
T Consensus 44 ~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~v~~~r~~ 85 (110)
T 1kb2_A 44 TCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEV 85 (110)
T ss_dssp CCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCCHHHH
T ss_pred eeCCCCCccCCcccceecccccHhhhhhcCCcHHhcccHHHH
Confidence 488999999999999999999999999999999988887654
No 17
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=99.44 E-value=4.8e-14 Score=86.36 Aligned_cols=41 Identities=32% Similarity=0.623 Sum_probs=33.6
Q ss_pred CCCCCCCceecCCCCCCCchhhhhHHHHhcCCccccccccc
Q psy1782 1 MYSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41 (90)
Q Consensus 1 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~ 41 (90)
.|..+++|.|++..|+.|++|||+|||++||++++++..+.
T Consensus 45 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~~k~~k~ 85 (105)
T 1r4i_A 45 LCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLGARKLKKL 85 (105)
T ss_dssp CCSSSSCCCCCTTTTTTCHHHHHHHHHHHTCCSCC------
T ss_pred eeccCCccccCccccccchhchHHHHHhhhcccchhhhccc
Confidence 48899999999999999999999999999999999887654
No 18
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=99.40 E-value=2.7e-13 Score=100.49 Aligned_cols=46 Identities=48% Similarity=0.840 Sum_probs=42.4
Q ss_pred CCCCCCCceecCCCCCCCchhhhhHHHHhcCCcccccccccccccC
Q psy1782 1 MYSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCR 46 (90)
Q Consensus 1 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~~~~~ 46 (90)
.|+++++|.|++..|+.|++|||+||+++||++++||.+|++.+.+
T Consensus 175 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~~k~r 220 (467)
T 3dzy_A 175 TCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDR 220 (467)
T ss_dssp CCSSSSCCCCCSSSSSSCHHHHHHHHHHTTCCGGGCCCCSCCCCCC
T ss_pred eCCCCCCCCCCcccccccccchhhhhhhccccchhhhccccccccc
Confidence 4899999999999999999999999999999999999999876543
No 19
>2lze_A A primordial catalytic fold generated by in vitro evolution; ligase, de novo protein; NMR {Synthetic construct}
Probab=99.37 E-value=1.5e-13 Score=81.64 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=34.0
Q ss_pred CCCCCCCceecCCCCCCCchhhhhHHHHhcCCccccc
Q psy1782 1 MYSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQ 37 (90)
Q Consensus 1 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq 37 (90)
.|..+++|.|++..|+.|++|||+|||+|||....+.
T Consensus 40 ~C~~~~~C~i~~~~R~~C~~CR~qKCl~VgM~~~~~~ 76 (87)
T 2lze_A 40 TDRDYKNCESYHKCSDLCQYCRYQKDLAIHHQHHHGG 76 (87)
T ss_dssp TSCCCCCCCCSSCCSSSCSGGGTSCCHHHHCSSCCCC
T ss_pred EcCCCCccccCCCccCcCCcccChhhccCcCEeccCc
Confidence 3899999999999999999999999999999987654
No 20
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=99.30 E-value=2e-12 Score=94.65 Aligned_cols=42 Identities=31% Similarity=0.634 Sum_probs=38.2
Q ss_pred CCCceecCCCCCCCchhhhhHHHHhcCCcccccccccccccC
Q psy1782 5 LHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCR 46 (90)
Q Consensus 5 ~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~~~~~ 46 (90)
+++|.|++..|+.|++|||+||+++||++++||.+|++.+.+
T Consensus 91 ~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~vq~~R~~~~~k 132 (419)
T 3dzy_D 91 DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAEK 132 (419)
T ss_dssp CSCCCCCTTGGGTCHHHHHHHHHHTTCCGGGCCCSCCTTTTG
T ss_pred cCCCCcccccCccchhhhHHHHhhcccchhheeccccccccc
Confidence 468999999999999999999999999999999999876543
No 21
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=97.86 E-value=3.1e-06 Score=58.43 Aligned_cols=51 Identities=31% Similarity=0.360 Sum_probs=9.3
Q ss_pred hhHHHHhcCCcccccccccccccCCCCCcc--cccCCCCCccchhhHHHhhhh
Q psy1782 23 LKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLNAEMLSRQ 73 (90)
Q Consensus 23 ~~KCl~vGM~~~~vq~~r~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 73 (90)
-.||++|||++++||.+|++.+++.+.... .....+.++..++.++...++
T Consensus 12 ~~kCl~vGMkkeaVq~~R~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~e~ 64 (282)
T 1lbd_A 12 SGLVPRGSHKREAVQEERQRGKDRNENEVESTSSANEDMPVERILEAELAVEP 64 (282)
T ss_dssp ---------------------------------CCTTTSCHHHHHHHHHTTCC
T ss_pred CCCcCccCCcHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhcCC
Confidence 369999999999999999987654332221 111223345666666554443
No 22
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=33.55 E-value=15 Score=17.61 Aligned_cols=11 Identities=27% Similarity=0.760 Sum_probs=9.3
Q ss_pred chhhhhHHHHh
Q psy1782 19 RYCRLKKCFKA 29 (90)
Q Consensus 19 ~~CR~~KCl~v 29 (90)
++|.|++||+.
T Consensus 6 ~a~a~q~CL~~ 16 (38)
T 1ei0_A 6 QAAEIQKCLQA 16 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46999999995
No 23
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=29.46 E-value=11 Score=25.67 Aligned_cols=16 Identities=38% Similarity=0.603 Sum_probs=0.0
Q ss_pred CCcccccccccccccC
Q psy1782 31 MKKEAVQNERDRISCR 46 (90)
Q Consensus 31 M~~~~vq~~r~~~~~~ 46 (90)
|++++||.+|.+.+++
T Consensus 1 M~rEaVr~~R~~~~~~ 16 (303)
T 1xdk_B 1 MSKESVRNDRNKKKKE 16 (303)
T ss_dssp ----------------
T ss_pred CCHHHHhhcccccccc
Confidence 8899999999875543
No 24
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=24.28 E-value=27 Score=19.12 Aligned_cols=14 Identities=36% Similarity=1.179 Sum_probs=10.9
Q ss_pred CCCc--hhhhhHHHHh
Q psy1782 16 NQCR--YCRLKKCFKA 29 (90)
Q Consensus 16 ~~C~--~CR~~KCl~v 29 (90)
..|+ +|.|++||+.
T Consensus 5 dPC~~~AcaiQ~CL~~ 20 (68)
T 1hp8_A 5 DPCQKQACEIQKCLQA 20 (68)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHH
Confidence 4554 6999999994
No 25
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=21.55 E-value=20 Score=23.86 Aligned_cols=15 Identities=27% Similarity=0.206 Sum_probs=0.0
Q ss_pred CCccccccccccccc
Q psy1782 31 MKKEAVQNERDRISC 45 (90)
Q Consensus 31 M~~~~vq~~r~~~~~ 45 (90)
|.+++||.||.+.++
T Consensus 1 M~kE~Vr~dr~~~~r 15 (271)
T 1ovl_A 1 MVKEVVRTDSLKGRR 15 (271)
T ss_dssp ---------------
T ss_pred CCccccccCccccCC
Confidence 889999999887554
Done!