Query psy1782
Match_columns 90
No_of_seqs 114 out of 1178
Neff 7.7
Searched_HMMs 13730
Date Fri Aug 16 23:51:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1782.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1782hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lo1a_ g.39.1.2 (A:) Steroid 99.6 1.6E-16 1.2E-20 93.6 1.0 46 2-47 43-88 (90)
2 d1dszb_ g.39.1.2 (B:) Retinoid 99.6 1.1E-15 7.9E-20 89.0 3.6 41 2-42 44-84 (84)
3 d2hanb1 g.39.1.2 (B:5-87) Ecdy 99.5 7.4E-16 5.4E-20 89.5 2.1 44 2-45 39-82 (83)
4 d1a6ya_ g.39.1.2 (A:) Orphan n 99.5 2E-15 1.5E-19 86.7 2.7 39 2-40 40-78 (78)
5 d1kb2a_ g.39.1.2 (A:) Vitamin 99.5 1.3E-15 9.5E-20 89.5 1.8 44 1-44 38-81 (89)
6 d1cita_ g.39.1.2 (A:) Orphan n 99.5 1.1E-14 8.2E-19 85.4 5.0 43 2-44 39-81 (89)
7 d1dsza_ g.39.1.2 (A:) Retinoic 99.5 4.7E-15 3.4E-19 84.6 3.1 39 1-39 37-75 (75)
8 d2nllb_ g.39.1.2 (B:) Thyroid 99.5 1.2E-14 8.8E-19 87.3 2.8 44 2-45 42-85 (103)
9 d1r4ia_ g.39.1.2 (A:) Androgen 99.4 1.1E-13 8.3E-18 78.5 3.2 34 2-35 41-74 (74)
10 d1lata_ g.39.1.2 (A:) Glucocor 99.3 6.7E-13 4.9E-17 74.7 3.4 34 1-34 38-71 (71)
11 d1hcqa_ g.39.1.2 (A:) Estrogen 99.3 6.7E-13 4.9E-17 75.3 3.3 33 1-33 42-74 (74)
12 d2hp8a_ a.17.1.1 (A:) p8-MTCP1 47.9 3 0.00022 21.7 0.9 11 19-29 10-20 (68)
13 d1nuba2 g.3.11.3 (A:53-77) Dom 36.0 3.6 0.00026 17.1 -0.0 17 2-18 8-24 (26)
14 d1klra_ g.37.1.1 (A:) ZFY {Hum 21.7 7.9 0.00058 16.5 -0.2 9 16-24 3-11 (30)
15 d1lr7a1 g.3.11.3 (A:64-88) Dom 20.8 9.4 0.00068 15.6 -0.1 17 2-18 8-24 (26)
No 1
>d1lo1a_ g.39.1.2 (A:) Steroid hormone receptor Err2 DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.57 E-value=1.6e-16 Score=93.58 Aligned_cols=46 Identities=30% Similarity=0.519 Sum_probs=42.0
Q ss_pred CCCCCCceecCCCCCCCchhhhhHHHHhcCCcccccccccccccCC
Q psy1782 2 YSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRR 47 (90)
Q Consensus 2 C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~~~~~~ 47 (90)
|..+++|.|+...|+.|++|||+|||++||++++||.+|+..+++.
T Consensus 43 c~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~Vq~~r~~~~r~k 88 (90)
T d1lo1a_ 43 CPATNECEITKRRRKSCQACRFMKALKVGMLKEGVRLDRVRGGRQK 88 (90)
T ss_dssp CSSCSCCCCCHHHHHHCHHHHHHHHHHHTCCGGGSCSSCCTTCCCC
T ss_pred hhcCCCCccCCCCccccchhhHHHHHHcCCCHHHhccccccccccC
Confidence 7889999999999999999999999999999999999998766543
No 2
>d1dszb_ g.39.1.2 (B:) Retinoid X receptor (RXR-alpha) DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.55 E-value=1.1e-15 Score=88.96 Aligned_cols=41 Identities=51% Similarity=0.971 Sum_probs=38.9
Q ss_pred CCCCCCceecCCCCCCCchhhhhHHHHhcCCcccccccccc
Q psy1782 2 YSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42 (90)
Q Consensus 2 C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~ 42 (90)
|..+++|.+++..|+.|++|||+|||+|||++++||.+|++
T Consensus 44 c~~~~~C~~~~~~r~~Cr~CR~~KCl~vGM~~~~vq~~Rdr 84 (84)
T d1dszb_ 44 CRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQR 84 (84)
T ss_dssp CSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCCCCCC
T ss_pred ccCCCCcccCCCCCccCCCCccHHHHHcCCChHHcccccCC
Confidence 77899999999999999999999999999999999999874
No 3
>d2hanb1 g.39.1.2 (B:5-87) Ecdysone receptor DNA-binding domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.54 E-value=7.4e-16 Score=89.50 Aligned_cols=44 Identities=32% Similarity=0.455 Sum_probs=40.7
Q ss_pred CCCCCCceecCCCCCCCchhhhhHHHHhcCCccccccccccccc
Q psy1782 2 YSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISC 45 (90)
Q Consensus 2 C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~~~~ 45 (90)
|..+++|.+++..|+.|++|||+|||++||++++||.+|+..++
T Consensus 39 c~~~~~C~~~~~~r~~Cr~CR~~KCl~vGM~~~~vq~~r~~~~k 82 (83)
T d2hanb1 39 CKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMK 82 (83)
T ss_dssp CSSCSCCCCSTTGGGTCHHHHHHHHHHTTCCGGGSSCSSHHHHH
T ss_pred ecCCCCcccCCcccccCccchHHHHHHcCCCHHHccccchhccC
Confidence 78899999999999999999999999999999999999886543
No 4
>d1a6ya_ g.39.1.2 (A:) Orphan nuclear receptor reverb DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.52 E-value=2e-15 Score=86.68 Aligned_cols=39 Identities=36% Similarity=0.670 Sum_probs=36.4
Q ss_pred CCCCCCceecCCCCCCCchhhhhHHHHhcCCcccccccc
Q psy1782 2 YSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40 (90)
Q Consensus 2 C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r 40 (90)
|..+++|.+++..|..|++|||+|||++||++++||.+|
T Consensus 40 ~~~~~~c~~~~~~r~~Cr~CR~~KCl~~GM~~~~vq~~R 78 (78)
T d1a6ya_ 40 CLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGR 78 (78)
T ss_dssp CSSTTCCCCCTTTTTSCHHHHHHHHTTTTCCSTTCCCCC
T ss_pred eccCCCcccCCCCCccchhhHHHHHHHhCCCHHHhcCCC
Confidence 566789999999999999999999999999999999876
No 5
>d1kb2a_ g.39.1.2 (A:) Vitamin D3 receptor, VDR, DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.51 E-value=1.3e-15 Score=89.46 Aligned_cols=44 Identities=30% Similarity=0.542 Sum_probs=40.5
Q ss_pred CCCCCCCceecCCCCCCCchhhhhHHHHhcCCcccccccccccc
Q psy1782 1 MYSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRIS 44 (90)
Q Consensus 1 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~~~ 44 (90)
.|..+++|.|+...|+.|++|||+|||+|||++++||.+|+...
T Consensus 38 ~c~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~v~~~r~~~~ 81 (89)
T d1kb2a_ 38 TCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQR 81 (89)
T ss_dssp CCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCCHHHHHH
T ss_pred ecCCCCccCCCCcCCccCchhhHHHHHHcCCCHhhccccchhch
Confidence 37889999999999999999999999999999999999987654
No 6
>d1cita_ g.39.1.2 (A:) Orphan nuclear receptor NGFI-B DNA-binding domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.50 E-value=1.1e-14 Score=85.41 Aligned_cols=43 Identities=35% Similarity=0.669 Sum_probs=39.5
Q ss_pred CCCCCCceecCCCCCCCchhhhhHHHHhcCCcccccccccccc
Q psy1782 2 YSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRIS 44 (90)
Q Consensus 2 C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~~~ 44 (90)
|..+++|.++...|+.|++|||+|||++||++++||.+++...
T Consensus 39 c~~~~~c~~~~~~r~~Cr~CR~~KCl~~GM~~~~v~~~~~~~~ 81 (89)
T d1cita_ 39 CLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGR 81 (89)
T ss_dssp CSSSSCCCCSTTTTTTCHHHHHHHHHHTTCCGGGSCCGGGTTC
T ss_pred ecCCCCccccCCccccCchhhHHHHHHcCCCHHHhcccccccc
Confidence 7788999999999999999999999999999999998876544
No 7
>d1dsza_ g.39.1.2 (A:) Retinoic acid receptor DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.49 E-value=4.7e-15 Score=84.57 Aligned_cols=39 Identities=44% Similarity=0.945 Sum_probs=36.5
Q ss_pred CCCCCCCceecCCCCCCCchhhhhHHHHhcCCccccccc
Q psy1782 1 MYSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNE 39 (90)
Q Consensus 1 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~ 39 (90)
.|..+++|.+++..|..|++|||+|||++||++++||+|
T Consensus 37 ~c~~~~~c~~~~~~r~~Cr~CR~~KCl~~GM~~~~vq~d 75 (75)
T d1dsza_ 37 TCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRND 75 (75)
T ss_dssp CCSSCSCCCCSTTTGGGCHHHHHHHHHHTTCCGGGSCCC
T ss_pred ecccCCccccCCccccccchhHHHHHHHhCCCHHHccCC
Confidence 378899999999999999999999999999999999975
No 8
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta) DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.45 E-value=1.2e-14 Score=87.31 Aligned_cols=44 Identities=36% Similarity=0.649 Sum_probs=40.4
Q ss_pred CCCCCCceecCCCCCCCchhhhhHHHHhcCCccccccccccccc
Q psy1782 2 YSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISC 45 (90)
Q Consensus 2 C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~~~~ 45 (90)
|..+++|.|++..|+.|++|||+|||+|||++++||.+|++...
T Consensus 42 c~~~~~c~~~~~~r~~Cr~CR~~KCl~vGM~~~~v~~~r~~~~~ 85 (103)
T d2nllb_ 42 CKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAK 85 (103)
T ss_dssp CSSCTTCCCSTTTTTSCHHHHHHHHHHTTCCGGGSCCHHHHHHH
T ss_pred cccCCCCcCCCCccCCCccccchhHHHhhccHHhhhccccchhh
Confidence 67889999999999999999999999999999999999886553
No 9
>d1r4ia_ g.39.1.2 (A:) Androgen receptor {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.37 E-value=1.1e-13 Score=78.52 Aligned_cols=34 Identities=38% Similarity=0.759 Sum_probs=32.2
Q ss_pred CCCCCCceecCCCCCCCchhhhhHHHHhcCCccc
Q psy1782 2 YSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEA 35 (90)
Q Consensus 2 C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~ 35 (90)
|..+++|.|++..|+.|++|||+|||++||+.+|
T Consensus 41 c~~~~~C~~~~~~r~~C~~CR~~KCl~vGM~~~A 74 (74)
T d1r4ia_ 41 CASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLGA 74 (74)
T ss_dssp CSSSSCCCCCTTTTTTCHHHHHHHHHHHTCCSCC
T ss_pred eecCCCcccCCCCcccchhhhHHHHHHcCCcCCC
Confidence 7889999999999999999999999999999875
No 10
>d1lata_ g.39.1.2 (A:) Glucocorticoid receptor DNA-binding domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.30 E-value=6.7e-13 Score=74.73 Aligned_cols=34 Identities=38% Similarity=0.754 Sum_probs=31.5
Q ss_pred CCCCCCCceecCCCCCCCchhhhhHHHHhcCCcc
Q psy1782 1 MYSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKE 34 (90)
Q Consensus 1 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~ 34 (90)
.|..+++|.++...|+.|++|||+|||++||++|
T Consensus 38 ~c~~~~~C~~~~~~r~~Cr~CR~~KCl~~GM~~e 71 (71)
T d1lata_ 38 LCKYEGKCIIDKIRRKNCPACRYRKCLQAGMNLE 71 (71)
T ss_dssp CCSSCSCCCCSTTTTTTCHHHHHHHHHHTTCCCC
T ss_pred eeecCcccccccCccccCCccchhHHhHccCCCC
Confidence 3778899999999999999999999999999975
No 11
>d1hcqa_ g.39.1.2 (A:) Estrogen receptor DNA-binding domain {Human and chicken (Homo sapiens) and (Gallus gallus) [TaxId: 9606]}
Probab=99.29 E-value=6.7e-13 Score=75.27 Aligned_cols=33 Identities=39% Similarity=0.915 Sum_probs=31.1
Q ss_pred CCCCCCCceecCCCCCCCchhhhhHHHHhcCCc
Q psy1782 1 MYSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKK 33 (90)
Q Consensus 1 ~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~ 33 (90)
.|..+++|.|+...|+.|++|||+|||++||++
T Consensus 42 ~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~k 74 (74)
T d1hcqa_ 42 MCPATNQCTIDKNRRKSCQACRLRKCYEVGMMK 74 (74)
T ss_dssp CCSSSSCCCCSTTTTTTCHHHHHHHHHHHTCCC
T ss_pred ccccCCCCccCCCccccchHhhHHHHHHcCCcC
Confidence 488999999999999999999999999999984
No 12
>d2hp8a_ a.17.1.1 (A:) p8-MTCP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.87 E-value=3 Score=21.67 Aligned_cols=11 Identities=36% Similarity=1.093 Sum_probs=9.6
Q ss_pred chhhhhHHHHh
Q psy1782 19 RYCRLKKCFKA 29 (90)
Q Consensus 19 ~~CR~~KCl~v 29 (90)
++|++++||+.
T Consensus 10 ~AC~IQ~CLq~ 20 (68)
T d2hp8a_ 10 QACEIQKCLQA 20 (68)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 57999999994
No 13
>d1nuba2 g.3.11.3 (A:53-77) Domain of BM-40/SPARC/osteonectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.99 E-value=3.6 Score=17.08 Aligned_cols=17 Identities=12% Similarity=0.190 Sum_probs=12.8
Q ss_pred CCCCCCceecCCCCCCC
Q psy1782 2 YSKLHKQLVDKDKRNQC 18 (90)
Q Consensus 2 C~~~~~C~i~~~~r~~C 18 (90)
|+.+.-|.+|....-.|
T Consensus 8 ck~gkvcevde~n~pmc 24 (26)
T d1nuba2 8 CKHGKVCELDENNTPMC 24 (26)
T ss_dssp CCTTEEEEECTTCCEEE
T ss_pred cccCcEeeeCCCCCccc
Confidence 78888899887765544
No 14
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.66 E-value=7.9 Score=16.50 Aligned_cols=9 Identities=44% Similarity=1.431 Sum_probs=6.1
Q ss_pred CCCchhhhh
Q psy1782 16 NQCRYCRLK 24 (90)
Q Consensus 16 ~~C~~CR~~ 24 (90)
.+|++|.|+
T Consensus 3 y~cqyc~yr 11 (30)
T d1klra_ 3 YQCQYCEFR 11 (30)
T ss_dssp CCCSSSSCC
T ss_pred ccccccccc
Confidence 467787764
No 15
>d1lr7a1 g.3.11.3 (A:64-88) Domain of follistatin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.76 E-value=9.4 Score=15.64 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=9.8
Q ss_pred CCCCCCceecCCCCCCC
Q psy1782 2 YSKLHKQLVDKDKRNQC 18 (90)
Q Consensus 2 C~~~~~C~i~~~~r~~C 18 (90)
|-.+..|..++..+-.|
T Consensus 8 cgpgk~c~mnrrnkprc 24 (26)
T d1lr7a1 8 CGPGKKCRMNKKNKPRC 24 (26)
T ss_dssp CCTTEEEEECTTSCEEE
T ss_pred cCCCccccccccCCCcc
Confidence 55566666666555444
Done!