RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1782
         (90 letters)



>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR,
          nuclear receptor, protein-DNA complex, transcripti
          complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
          Length = 99

 Score = 71.7 bits (176), Expect = 2e-18
 Identities = 24/49 (48%), Positives = 34/49 (69%)

Query: 9  LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANN 57
          L+DK +RN+C+YCR +KC   GMK+EAVQ ER R   R  +  E+T++ 
Sbjct: 49 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSA 97


>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery,
          lever ARM, transcription, hormone; HET: DNA; 1.61A
          {Rattus norvegicus} PDB: 3g6p_A* 3g6q_B* 3g6r_B*
          3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A*
          3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A*
          1gdc_A 2gda_A 1rgd_A ...
          Length = 90

 Score = 67.1 bits (164), Expect = 1e-16
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPS 49
          +DK +R  C  CR +KC +AGM  EA + ++     ++ +
Sbjct: 49 IDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIKGIQQAT 88


>2han_A Protein ultraspiracle; transcription regulation, transcription
          factor, DNA-binding, nuclear protein, nuclear receptor,
          zinc finger; 1.95A {Drosophila melanogaster} SCOP:
          g.39.1.2
          Length = 93

 Score = 66.6 bits (163), Expect = 2e-16
 Identities = 20/35 (57%), Positives = 26/35 (74%)

Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRIS 44
          +DK +RN+C+YCR +KC   GMK+EAVQ ER  I 
Sbjct: 57 IDKRQRNRCQYCRYQKCLTCGMKREAVQEERQGIH 91


>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding
          domain, nuclear; zinc finger; 2.00A {Homo sapiens}
          Length = 78

 Score = 66.2 bits (162), Expect = 2e-16
 Identities = 31/32 (96%), Positives = 32/32 (100%)

Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
          VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERD
Sbjct: 47 VDKDKRNQCRYCRLKKCFRAGMKKEAVQNERD 78


>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear
          receptor, structural proteomic europe, spine,
          structural genomics; 2.70A {Homo sapiens} SCOP:
          a.123.1.1 PDB: 1z5x_U* 2q60_A
          Length = 282

 Score = 70.2 bits (172), Expect = 3e-16
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 15 RNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLNAEMLSR 72
           +      + +      K+EAVQ ER R   R  +  E+T  AN  + V  +L AE+   
Sbjct: 7  HHHHSSGLVPR---GSHKREAVQEERQRGKDRNENEVESTSSANEDMPVERILEAELAVE 63

Query: 73 Q 73
           
Sbjct: 64 P 64


>2han_B Ecdysone receptor; transcription regulation, transcription factor,
           DNA-binding, nuclear protein, nuclear receptor, zinc
           finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
           PDB: 1r0o_B 1r0n_B
          Length = 119

 Score = 66.8 bits (163), Expect = 4e-16
 Identities = 17/54 (31%), Positives = 24/54 (44%)

Query: 10  VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNS 63
           +D   R +C+ CRLKKC   GM+ E V  E      RR    +   +   +  S
Sbjct: 55  MDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRREKKAQKEKDKMTTSPS 108


>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear
          protein, receptor, transcription regulation, zinc,
          EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
          Length = 89

 Score = 65.0 bits (159), Expect = 7e-16
 Identities = 19/31 (61%), Positives = 24/31 (77%)

Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
          +D+  RNQC+YCRLKKC K GM++EAVQ   
Sbjct: 54 IDQHHRNQCQYCRLKKCLKVGMRREAVQRGS 84


>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear
          receptor, protein-DNA, transcription/DNA complex; HET:
          DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A*
          1rxr_A 1r0n_A 1r0o_A 2nll_A*
          Length = 85

 Score = 65.0 bits (159), Expect = 7e-16
 Identities = 21/34 (61%), Positives = 27/34 (79%)

Query: 9  LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
          L+DK +RN+C+YCR +KC   GMK+EAVQ ER R
Sbjct: 51 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQR 84


>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate
          response gene product, transcription factor, monomeric
          protein-DNA complex; HET: DNA; 2.70A {Rattus
          norvegicus} SCOP: g.39.1.2
          Length = 89

 Score = 65.1 bits (159), Expect = 8e-16
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRR 47
          VDK +RN+C++CR +KC   GM KE V+ +  +    R
Sbjct: 47 VDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGR 84


>2nll_B Protein (thyroid hormone receptor); complex (transcription
          regulation/DNA), DNA-binding, nuclear protein, zinc-
          finger, multigene family; HET: DNA 5IU; 1.90A {Homo
          sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
          Length = 103

 Score = 64.8 bits (158), Expect = 1e-15
 Identities = 17/47 (36%), Positives = 25/47 (53%)

Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN 56
          +DK  RNQC+ CR KKC   GM  + V ++  R++ R+   E     
Sbjct: 50 IDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKR 96


>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor,
          protein-DNA, transcription/DNA complex; HET: DNA; 1.70A
          {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
          Length = 86

 Score = 63.9 bits (156), Expect = 2e-15
 Identities = 18/33 (54%), Positives = 29/33 (87%)

Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
          ++K  RN+C+YCRL+KCF+ GM KE+V+N+R++
Sbjct: 51 INKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK 83


>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
           interaction, metal-binding, nucleus, receptor,
           transcription, transcription regulation, zinc-FIN
           activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
           3dzu_A* 3e00_A*
          Length = 467

 Score = 68.6 bits (167), Expect = 2e-15
 Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 9   LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
           L+DK +RN+C+YCR +KC   GMK+EAVQ ER R   R  +  E+T  AN  + V  +L 
Sbjct: 183 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVERILE 242

Query: 67  AEMLSRQ 73
           AE+    
Sbjct: 243 AELAVEP 249


>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA
          binding domain, HERR2, hormone nuclear receptor; NMR
          {Homo sapiens} SCOP: g.39.1.2
          Length = 98

 Score = 62.8 bits (153), Expect = 6e-15
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANN 57
          + K +R  C+ CR  K  K GM KE V+ +R R   ++      + N+
Sbjct: 51 ITKRRRKSCQACRFMKALKVGMLKEGVRLDRVRGGRQKYKRRLDSENS 98


>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger,
          DNA- binding domain, transcription factor, FTZ-F1,
          C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
          Length = 113

 Score = 63.2 bits (154), Expect = 7e-15
 Identities = 17/38 (44%), Positives = 24/38 (63%)

Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRR 47
          +DK +R +C YCR +KC   GMK EAV+ +R R    +
Sbjct: 56 IDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNK 93


>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding,
          reverb, REV- ERB, transcription regulation,
          transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo
          sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
          Length = 94

 Score = 62.8 bits (153), Expect = 7e-15
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRR 47
          + +  RN+C+ CR KKC   GM ++AV+  R     ++
Sbjct: 55 IVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREKQ 92


>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with
          drug, transcription/DNA complex; HET: DNA; 2.40A {Homo
          sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
          Length = 84

 Score = 60.1 bits (146), Expect = 6e-14
 Identities = 13/33 (39%), Positives = 23/33 (69%)

Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
          +DK++R  C+ CRL+KC++ GM K  ++ +R  
Sbjct: 51 IDKNRRKSCQACRLRKCYEVGMMKGGIRKDRRG 83


>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex,
          transcription/DNA complex; 2.70A {Homo sapiens} SCOP:
          g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
          Length = 110

 Score = 60.6 bits (147), Expect = 7e-14
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRR 47
          + KD R  C+ CRLK+C   GM KE +  + +    R 
Sbjct: 53 ITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKRE 90


>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex,
          transcription/DNA complex; 3.10A {Rattus norvegicus}
          SCOP: g.39.1.2
          Length = 105

 Score = 60.2 bits (146), Expect = 9e-14
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA 55
          +DK +R  C  CRL+KC++AGM   A + ++      +   E ++A
Sbjct: 54 IDKFRRKNCPSCRLRKCYEAGMTLGARKLKKLGNLKLQEEGENSSA 99


>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding,
           HOST-virus interaction, metal-binding, nucleus,
           receptor, transcription, transcription regulation,
           zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo
           sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
          Length = 419

 Score = 59.3 bits (143), Expect = 3e-12
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 1   MYSKLHKQL-VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGL 59
           +Y +      + K  RN+C+YCR +KC   GM   A++  R   + +     E +++   
Sbjct: 86  IYDRCDLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAEKEKLLAEISSDIDQ 145

Query: 60  SVNSLLNAEMLSRQV 74
                 +   L++ +
Sbjct: 146 LNPESADLRALAKHL 160


>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET:
          VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A*
          3o1d_A* 3o1e_A*
          Length = 302

 Score = 46.0 bits (109), Expect = 1e-07
 Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 4/68 (5%)

Query: 6  HKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLL 65
          H +  D    +   + R +   + G    +        S    S  ++  ++  SV++ L
Sbjct: 20 HHKTYD---DSYSDFVRFRPPVREGPVTRSASRAASLHSLSDAS-SDSFNHSPESVDTKL 75

Query: 66 NAEMLSRQ 73
          N   L   
Sbjct: 76 NFSNLLMM 83


>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD,
          transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
          Length = 271

 Score = 45.5 bits (108), Expect = 2e-07
 Identities = 8/61 (13%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 28 KAGMKKEAVQNERDRISCRRPSYEETTANNGLS--VNSLLNAEMLSRQVGAVREEVSLFG 85
          K  ++ ++++  R R+  +  S +E +  +     +++L+ A + S       +      
Sbjct: 3  KEVVRTDSLKGRRGRLPSKPKSPQEPSPPSPPVSLISALVRAHVDSNPAMTSLDYSRFQA 62

Query: 86 S 86
          +
Sbjct: 63 N 63


>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor,
          coactivator, ligand, hormone/growth factor receptor
          complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
          Length = 303

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 31 MKKEAVQNERDRISCRRPSYEETTANNGLS------VNSLLNAEMLSRQ 73
          M KE+V+N+R++   + PS +E T +  ++         +  A   +  
Sbjct: 1  MSKESVRNDRNKKK-KEPSKQECTESYEMTAELDDLTEKIRKAHQETFP 48


>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear
          receptor, ECR, USP, hormone/growth factor receptor
          complex; HET: P1A; 3.07A {Bemisia tabaci}
          Length = 310

 Score = 39.8 bits (93), Expect = 2e-05
 Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 2/68 (2%)

Query: 12 KDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAEMLS 71
          K K  + +  + K         + ++ E D    R  +  +  + NG+   +    E++ 
Sbjct: 26 KRKEKKAQKDKDKPNSTTSCSPDGIKQEIDP--QRLDTDSQLLSVNGVKPITPEQEELIH 83

Query: 72 RQVGAVRE 79
          R V    E
Sbjct: 84 RLVYFQNE 91



 Score = 38.6 bits (90), Expect = 6e-05
 Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 7/69 (10%)

Query: 7  KQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEET--TANNGLSVNSL 64
          K   DKDK N    C        G+K+E      D  S           T      ++ L
Sbjct: 31 KAQKDKDKPNSTTSCS-----PDGIKQEIDPQRLDTDSQLLSVNGVKPITPEQEELIHRL 85

Query: 65 LNAEMLSRQ 73
          +  +     
Sbjct: 86 VYFQNEYEH 94


>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling,
          alternative DNA-binding, metal-binding, nucleus,
          polymorphism, receptor transcription; HET: 965; 2.00A
          {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B*
          1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A*
          1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
          Length = 283

 Score = 34.0 bits (78), Expect = 0.003
 Identities = 8/65 (12%), Positives = 20/65 (30%), Gaps = 16/65 (24%)

Query: 13 DKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLS------VNSL 64
            ++Q ++            ++ +Q E    +   P    +       LS      +  L
Sbjct: 2  KHQHQHQHQH--------QHQQPLQEEEQAHATSLPPRASSPPQILPQLSPEQLGMIEKL 53

Query: 65 LNAEM 69
          + A+ 
Sbjct: 54 VAAQQ 58


>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand
          binding domain, transcription; HET: SRL; 2.00A {Homo
          sapiens} SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A*
          2qnv_A* 3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
          Length = 316

 Score = 32.9 bits (75), Expect = 0.007
 Identities = 6/35 (17%), Positives = 12/35 (34%)

Query: 15 RNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPS 49
                C L +  +A  ++EA +  + R       
Sbjct: 58 GVLSSGCELPESLQAPSREEAAKWSQVRKDLCSLK 92


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.7 bits (58), Expect = 1.1
 Identities = 4/17 (23%), Positives = 8/17 (47%), Gaps = 1/17 (5%)

Query: 5   LHKQLVDKDKRNQCRYC 21
           LH+ +VD     +  + 
Sbjct: 445 LHRSIVDHYNIPKT-FD 460



 Score = 24.8 bits (53), Expect = 5.6
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 12/86 (13%)

Query: 10  VDKDKRNQCR------YCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNS 63
           V    + QC+      +  LK C       E +Q    +I     S  + ++N  L ++S
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 64  LLNAEMLSRQVGAVREEVSLFGSLLV 89
           +     L R +    +       LLV
Sbjct: 230 I--QAELRRLL----KSKPYENCLLV 249


>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics,
           structural genomics consortium, metal-binding, nucleus,
           zinc-finger; 2.50A {Homo sapiens}
          Length = 437

 Score = 25.8 bits (56), Expect = 2.2
 Identities = 7/20 (35%), Positives = 8/20 (40%)

Query: 17  QCRYCRLKKCFKAGMKKEAV 36
                     F+ GMK EAV
Sbjct: 353 LFNKDVPNHGFRVGMKLEAV 372


>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase;
           2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
          Length = 428

 Score = 24.5 bits (53), Expect = 5.8
 Identities = 8/79 (10%), Positives = 26/79 (32%), Gaps = 13/79 (16%)

Query: 1   MYSKLHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLS 60
           +Y K+  ++ ++                  ++ + V      I  ++      T  + L 
Sbjct: 269 IYDKMRLEMWERGNGQP-------------VQLQVVWQRSRDICLKKFIKPIFTDESYLE 315

Query: 61  VNSLLNAEMLSRQVGAVRE 79
           +       + ++Q+ A + 
Sbjct: 316 LYRKQKKHLNTQQLTAFQL 334


>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich,
          structural proteomics in europe, spine, structural
          genomics, gene regulation; HET: EPH; 1.65A {Heliothis
          virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A*
          3ixp_A*
          Length = 264

 Score = 24.4 bits (53), Expect = 6.5
 Identities = 7/19 (36%), Positives = 8/19 (42%)

Query: 55 ANNGLSVNSLLNAEMLSRQ 73
          A   LS+  LL  E L   
Sbjct: 2  AVQELSIERLLEMESLVAD 20


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 24.3 bits (52), Expect = 6.9
 Identities = 7/51 (13%), Positives = 20/51 (39%), Gaps = 8/51 (15%)

Query: 7   KQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANN 57
           K+L + D  ++          +   +++A ++  +    +    E+   NN
Sbjct: 96  KRLQELDAASK------VM--EQEWREKAKKDLEEWNQRQSEQVEKNKINN 138


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.130    0.366 

Gapped
Lambda     K      H
   0.267   0.0610    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,194,808
Number of extensions: 54724
Number of successful extensions: 212
Number of sequences better than 10.0: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 35
Length of query: 90
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 33
Effective length of database: 5,110,296
Effective search space: 168639768
Effective search space used: 168639768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)