RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1782
(90 letters)
>d1dszb_ g.39.1.2 (B:) Retinoid X receptor (RXR-alpha) DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 51.9 bits (124), Expect = 4e-11
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
+DK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 52 IDKRQRNRCQYCRYQKCLAMGMKREAVQEERQR 84
>d2hanb1 g.39.1.2 (B:5-87) Ecdysone receptor DNA-binding domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 83
Score = 50.0 bits (119), Expect = 2e-10
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCR 46
+D R +C+ CRLKKC GM+ E V E R
Sbjct: 47 MDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKR 83
>d1lo1a_ g.39.1.2 (A:) Steroid hormone receptor Err2 DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 50.0 bits (119), Expect = 2e-10
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRR 47
+ K +R C+ CR K K GM KE V+ +R R ++
Sbjct: 51 ITKRRRKSCQACRFMKALKVGMLKEGVRLDRVRGGRQK 88
>d1cita_ g.39.1.2 (A:) Orphan nuclear receptor NGFI-B DNA-binding
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 89
Score = 49.3 bits (117), Expect = 5e-10
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 7 KQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRR 47
VDK +RN+C++CR +KC GM KE V+ + + R
Sbjct: 44 DCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGR 84
>d1dsza_ g.39.1.2 (A:) Retinoic acid receptor DNA-binding domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 47.4 bits (112), Expect = 2e-09
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 6 HKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNE 39
+++K RN+C+YCRL+KCF+ GM KE+V+N+
Sbjct: 42 KNCIINKVTRNRCQYCRLQKCFEVGMSKESVRND 75
>d1kb2a_ g.39.1.2 (A:) Vitamin D3 receptor, VDR, DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 47.3 bits (112), Expect = 3e-09
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 11 DKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCR 46
KD R C+ CRLK+C GM KE + + + R
Sbjct: 48 TKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKR 83
>d1a6ya_ g.39.1.2 (A:) Orphan nuclear receptor reverb DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 46.1 bits (109), Expect = 6e-09
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+ + RN+C+ CR KKC GM ++AV+ R
Sbjct: 48 IVRINRNRCQQCRFKKCLSVGMSRDAVRFGR 78
>d1r4ia_ g.39.1.2 (A:) Androgen receptor {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 74
Score = 44.7 bits (105), Expect = 2e-08
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEA 35
+DK +R C CRL+KC++AGM A
Sbjct: 49 IDKFRRKNCPSCRLRKCYEAGMTLGA 74
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 41.3 bits (96), Expect = 7e-07
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE 52
++DK RNQC+ CR KKC GM + V ++ R++ R+ E
Sbjct: 49 VIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEEN 92
>d1lata_ g.39.1.2 (A:) Glucocorticoid receptor DNA-binding domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 38.1 bits (88), Expect = 6e-06
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKE 34
+DK +R C CR +KC +AGM E
Sbjct: 47 IDKIRRKNCPACRYRKCLQAGMNLE 71
>d1hcqa_ g.39.1.2 (A:) Estrogen receptor DNA-binding domain {Human
and chicken (Homo sapiens) and (Gallus gallus) [TaxId:
9606]}
Length = 74
Score = 38.2 bits (88), Expect = 6e-06
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKK 33
+DK++R C+ CRL+KC++ GM K
Sbjct: 51 IDKNRRKSCQACRLRKCYEVGMMK 74
>d1pzla_ a.123.1.1 (A:) Hepatocyte nuclear factor 4-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 25.4 bits (55), Expect = 0.90
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 60 SVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 6 SINALLQAEVLSRQI 20
>d1wjsa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3
protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 127
Score = 23.3 bits (50), Expect = 4.2
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 24 KKCFKAGMKKEAV 36
K FK GMK E V
Sbjct: 11 KNGFKVGMKLEGV 23
>d1mw7a_ e.39.1.1 (A:) Hypothetical protein HP0162 {Helicobacter
pylori [TaxId: 210]}
Length = 220
Score = 23.5 bits (50), Expect = 4.5
Identities = 8/60 (13%), Positives = 18/60 (30%)
Query: 23 LKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAEMLSRQVGAVREEVS 82
+ M K+ + R S + + E T + L+ E ++ +
Sbjct: 31 ILNAKAQNMPKDNIDAAIKRASSKEGNLSEITYEGKANFGVLIIMECMTDNPTRTIANLK 90
>d1oz2a1 b.34.9.3 (A:204-313) Lethal(3)malignant brain tumor-like
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 23.3 bits (50), Expect = 4.8
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 22 RLKKCFKAGMKKEAV 36
K FK GMK E +
Sbjct: 30 HNKNGFKLGMKLEGI 44
>d1oi1a2 b.34.9.3 (A:140-243) Scml2 protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 104
Score = 22.9 bits (49), Expect = 4.9
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 22 RLKKCFKAGMKKEAV 36
FK GMK EA+
Sbjct: 28 PPLNNFKVGMKLEAI 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.130 0.366
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 286,052
Number of extensions: 10383
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 20
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)