BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17820
(210 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R0D|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 206 bits (525), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 92/136 (67%), Positives = 111/136 (81%), Gaps = 2/136 (1%)
Query: 74 FEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYT 133
+E ++PFKIPEDDGNDL HTFFNPD+EGWL K GGR K+WKRRWFIL D CLYYFEYT
Sbjct: 188 YESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYT 247
Query: 134 TDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGF--EFIKACKTDSEGKVVEGKHTVYR 191
TDKEPRGIIPLEN+ +REV D KP+CFEL+ + IKACKT+++G+VVEG H VYR
Sbjct: 248 TDKEPRGIIPLENLSIREVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYR 307
Query: 192 MSAATAEEKDEWIKCL 207
+SA + EEK+EW+K +
Sbjct: 308 ISAPSPEEKEEWMKSI 323
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 38/43 (88%)
Query: 2 HTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK 44
HTFFNPD+EGWL K GGR K+WKRRWFIL D CLYYFEYTTDK
Sbjct: 208 HTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDK 250
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R09|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 202 bits (515), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 91/136 (66%), Positives = 110/136 (80%), Gaps = 2/136 (1%)
Query: 74 FEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYT 133
+E ++PFKIPEDDGNDL +TFFNPD+EGWL K GGR K+WKRRWFIL D CLYYFEYT
Sbjct: 188 YESIKNEPFKIPEDDGNDLTYTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYT 247
Query: 134 TDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGF--EFIKACKTDSEGKVVEGKHTVYR 191
TDKEPRGIIPLEN+ +REV D KP+CFEL+ + IKACKT+++G+VVEG H VYR
Sbjct: 248 TDKEPRGIIPLENLSIREVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYR 307
Query: 192 MSAATAEEKDEWIKCL 207
+SA + EEK+EW K +
Sbjct: 308 ISAPSPEEKEEWXKSI 323
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 2 HTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK 44
+TFFNPD+EGWL K GGR K+WKRRWFIL D CLYYFEYTTDK
Sbjct: 208 YTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDK 250
>pdb|1FGY|A Chain A, Grp1 Ph Domain With Ins(1,3,4,5)p4
pdb|1FGZ|A Chain A, Grp1 Ph Domain (Unliganded)
Length = 127
Score = 169 bits (429), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 93/115 (80%), Gaps = 2/115 (1%)
Query: 95 TFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD 154
TFFNPD+EGWL K GGR K+WKRRWFIL D CLYYFEYTTDKEPRGIIPLEN+ +REV D
Sbjct: 1 TFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLD 60
Query: 155 RHKPHCFELFTSGF--EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
KP+CFEL+ + IKACKT+++G+VVEG H VYR+SA + EEK+EW K +
Sbjct: 61 PRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWXKSI 115
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 42/56 (75%), Gaps = 3/56 (5%)
Query: 3 TFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA---CLIENSSGR 55
TFFNPD+EGWL K GGR K+WKRRWFIL D CLYYFEYTTDK +EN S R
Sbjct: 1 TFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIR 56
>pdb|1U2B|A Chain A, Triglycine Variant Of The Grp1 Pleckstrin Homology Domain
Unliganded
Length = 138
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 78/116 (67%), Positives = 94/116 (81%), Gaps = 3/116 (2%)
Query: 95 TFFNPDKEGWLWK-QGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVH 153
TFFNPD+EGWL K GGR K+WKRRWFIL D CLYYFEYTTDKEPRGIIPLEN+ +REV
Sbjct: 11 TFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVE 70
Query: 154 DRHKPHCFELFTSGF--EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
D KP+CFEL+ + IKACKT+++G+VVEG H VYR+SA + EEK+EW+K +
Sbjct: 71 DPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSI 126
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 37/43 (86%), Gaps = 1/43 (2%)
Query: 3 TFFNPDKEGWLWK-QGGRYKSWKRRWFILNDKCLYYFEYTTDK 44
TFFNPD+EGWL K GGR K+WKRRWFIL D CLYYFEYTTDK
Sbjct: 11 TFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTTDK 53
>pdb|1FHW|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
pdb|1FHW|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
Length = 129
Score = 167 bits (422), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 75/113 (66%), Positives = 91/113 (80%), Gaps = 2/113 (1%)
Query: 97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRH 156
NPD+EGWL K GGR K+WKRRWFIL D CLYYFEYTTDKEPRGIIPLEN+ +REV D
Sbjct: 1 MNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPR 60
Query: 157 KPHCFELFTSGF--EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
KP+CFEL+ + IKACKT+++G+VVEG H VYR+SA + EEK+EW+K +
Sbjct: 61 KPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSI 113
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 39/54 (72%), Gaps = 3/54 (5%)
Query: 5 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA---CLIENSSGR 55
NPD+EGWL K GGR K+WKRRWFIL D CLYYFEYTTDK +EN S R
Sbjct: 1 MNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIR 54
>pdb|1FHX|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
pdb|1FHX|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 129
Score = 164 bits (416), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 90/112 (80%), Gaps = 2/112 (1%)
Query: 98 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHK 157
NPD+EGWL K GGR K+WKRRWFIL D CLYYFEYTTDKEPRGIIPLEN+ +REV D K
Sbjct: 2 NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRK 61
Query: 158 PHCFELFTSGF--EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
P+CFEL+ + IKACKT+++G+VVEG H VYR+SA + EEK+EW K +
Sbjct: 62 PNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWXKSI 113
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 39/53 (73%), Gaps = 3/53 (5%)
Query: 6 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA---CLIENSSGR 55
NPD+EGWL K GGR K+WKRRWFIL D CLYYFEYTTDK +EN S R
Sbjct: 2 NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIR 54
>pdb|1U27|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,3,4,5)p4
pdb|1U29|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,4,5)p3
Length = 129
Score = 163 bits (412), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 77/114 (67%), Positives = 91/114 (79%), Gaps = 3/114 (2%)
Query: 98 NPDKEGWLWK-QGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRH 156
+PD+EGWL K GGR K+WKRRWFIL D CLYYFEYTTDKEPRGIIPLEN+ +REV D
Sbjct: 10 SPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVDDPR 69
Query: 157 KPHCFELFTSG--FEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
KP+CFEL+ + IKACKT+++G+VVEG H VYR+SA T EEKDEWIK +
Sbjct: 70 KPNCFELYIPNNKGQLIKACKTEADGRVVEGNHMVYRISAPTQEEKDEWIKSIQ 123
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 59/106 (55%), Gaps = 11/106 (10%)
Query: 6 NPDKEGWLWK-QGGRYKSWKRRWFILNDKCLYYFEYTTDK---SACLIENSSGRYKSWKR 61
+PD+EGWL K GGR K+WKRRWFIL D CLYYFEYTTDK +EN S R R
Sbjct: 10 SPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVDDPR 69
Query: 62 R-----WFILNDKCLYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKE 102
+ +I N+K T+ ++ E GN +++ P +E
Sbjct: 70 KPNCFELYIPNNKGQLIKACKTEADGRVVE--GNHMVYRISAPTQE 113
>pdb|3TFM|A Chain A, Myosin X Ph1n-Ph2-Ph1c Tandem
Length = 228
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 85/218 (38%), Gaps = 39/218 (17%)
Query: 11 GWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD--KSACLIENSSGRY----KSWKRRWF 64
+L+ GG SWKRRW +L D+ +F + K L N G ++WK+RWF
Sbjct: 25 SFLYMNGGLMNSWKRRWCVLKDETFLWFRSKQEALKQGWLHNNGGGSSTLSRRNWKKRWF 84
Query: 65 ILNDKCLYYFEYTTDKPFK----------IPEDDGNDLMHTFFNPDKEGWLWKQGGRYKS 114
+L L YFE +++ K I ++ + D+ L + S
Sbjct: 85 VLRQSKLMYFENDSEEKLKGTVEVRSAKEIIDNTNKENGIDIIMADRTFHLIAESPEDAS 144
Query: 115 WKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKA- 173
+WF L +TD+E +RE+HD + T I +
Sbjct: 145 ---QWF----SVLSQVHSSTDQE-----------IREMHDEQANPQNAVGTLDVGLIDSV 186
Query: 174 CKTDSEGK----VVEGKHTVYRMSAATAEEKDEWIKCL 207
C +DS + V+ + V +A T EE WI L
Sbjct: 187 CASDSPDRPNSFVIITANRVLHCNADTPEEMHHWITLL 224
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 45/162 (27%)
Query: 52 SSGRYKSWKRRWFILNDKCLYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGG- 110
+ G SWKRRW +L D+ +F + K+GWL GG
Sbjct: 30 NGGLMNSWKRRWCVLKDETFLWFRSKQEAL-------------------KQGWLHNNGGG 70
Query: 111 ----RYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTS 166
++WK+RWF+L L YFE ++++ +G + + + +E+ D +
Sbjct: 71 SSTLSRRNWKKRWFVLRQSKLMYFENDSEEKLKGTVEVRS--AKEIIDNTNKE------N 122
Query: 167 GFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
G + I A +T + + A + E+ +W LS
Sbjct: 123 GIDIIMADRT-------------FHLIAESPEDASQWFSVLS 151
>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Family A Member 6 From Human
Length = 122
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 27/118 (22%)
Query: 98 NPD----KEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREV 152
NP+ K GWL+KQ K W +RWF+L D+CL+Y++ ++ G IPL + +V V
Sbjct: 17 NPNAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAV 76
Query: 153 H---DRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
+ + H F+ +G Y SA + EE++ WI+ +
Sbjct: 77 QPSDNISRKHTFKAEHAGVR-------------------TYFFSAESPEEQEAWIQAM 115
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 5/45 (11%)
Query: 6 NPD----KEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKS 45
NP+ K GWL+KQ K W +RWF+L D+CL+Y++ ++S
Sbjct: 17 NPNAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEES 61
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 42 TDKSACLIENSSGRYKSWKRRWFILNDKCLYYFE 75
K+ L + +S K W +RWF+L D+CL+Y++
Sbjct: 22 VTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYK 55
>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human
Length = 117
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 23/111 (20%)
Query: 101 KEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVH---DRH 156
K GWL+KQ K W +RWF+L D+CL+Y++ ++ G IPL + +V V +
Sbjct: 13 KAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNIS 72
Query: 157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
+ H F+ +G Y SA + EE++ WI+ +
Sbjct: 73 RKHTFKAEHAGVR-------------------TYFFSAESPEEQEAWIQAM 104
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 9 KEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKS 45
K GWL+KQ K W +RWF+L D+CL+Y++ ++S
Sbjct: 13 KAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEES 50
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 44 KSACLIENSSGRYKSWKRRWFILNDKCLYYFE 75
K+ L + +S K W +RWF+L D+CL+Y++
Sbjct: 13 KAGWLFKQASSGVKQWNKRWFVLVDRCLFYYK 44
>pdb|1EAZ|A Chain A, Crystal Structure Of The Phosphoinositol
(3,4)-Bisphosphate Binding Ph Domain Of Tapp1 From Human
Length = 125
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 20/110 (18%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRH--KP 158
K G+ KQG K+WKRR+F L++ + YF+ +KEP +IPL +EVH K
Sbjct: 16 KAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPL-----KEVHKVQECKQ 70
Query: 159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
+ + FE + +T + + A + EE WIK +S
Sbjct: 71 SDIMMRDNLFEIVTTSRT-------------FYVQADSPEEMHSWIKAVS 107
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 9 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSACLI--ENSSGRYKSWKRRWFIL 66
K G+ KQG K+WKRR+F L++ + YF+ +K + + + K+ ++
Sbjct: 16 KAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMM 75
Query: 67 NDKCLYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQG-GRYKS 114
D TT + F + + D + MH++ + ++G GR S
Sbjct: 76 RDNLFEIV--TTSRTFYV-QADSPEEMHSWIKAVSGAIVAQRGPGRSAS 121
>pdb|1FAO|A Chain A, Structure Of The Pleckstrin Homology Domain From
Dapp1PHISH IN COMPLEX WITH INOSITOL 1,3,4,5-
Tetrakisphosphate
pdb|1FB8|A Chain A, Structure Of The Pleckstrin Homology Domain From
Dapp1/phish
Length = 126
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 51/108 (47%), Gaps = 21/108 (19%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPL-ENIQVREVHDRHKPH 159
KEG+L KQGG K+WK RWF L+ L YF+ EP I+ L E V+ + + + +
Sbjct: 20 KEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVN 79
Query: 160 CFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
CF L F F T Y + A T E DEWIK L
Sbjct: 80 CFCLV---FPF----------------RTFY-LCAKTGVEADEWIKIL 107
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 9 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFE 39
KEG+L KQGG K+WK RWF L+ L YF+
Sbjct: 20 KEGYLTKQGGLVKTWKTRWFTLHRNELKYFK 50
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 49 IENSSGRYKSWKRRWFILNDKCLYYF-EYTTDKPFKI 84
+ G K+WK RWF L+ L YF + + +P +I
Sbjct: 24 LTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRI 60
>pdb|1V89|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Human Kiaa0053 Protein
Length = 118
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 98 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHK 157
P K GWL KQ K+W++R+F+L + LYY++ D +P+G + L ++E+
Sbjct: 7 GPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIAT--N 64
Query: 158 PHCFELFTSGFEFIKAC-KTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
P F FE I A + G Y + A++ E +EW+K L
Sbjct: 65 PEEAGKFV--FEIIPASWDQNRMG------QDSYVLMASSQAEMEEWVKFL 107
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 6 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYF--EYTTDKSACL 48
P K GWL KQ K+W++R+F+L + LYY+ E T C+
Sbjct: 7 GPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCM 51
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 57 KSWKRRWFILNDKCLYYFEYTTD-KPFKIPEDDGNDLMHTFFNPDKEG 103
K+W++R+F+L + LYY++ D KP G + NP++ G
Sbjct: 22 KNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEAG 69
>pdb|1X05|A Chain A, Solution Structure Of The C-Terminal Ph Domain Of Human
Pleckstrin
Length = 129
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKC--LYYFEYTTDKEPRGIIPLENIQVREVHDRHKP 158
K+G L KQG R K+WK R FIL + L+Y++ ++P G I L V V
Sbjct: 20 KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNG 79
Query: 159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL 209
E + FE I A + Y + AAT +E+ EWIK + +
Sbjct: 80 RKSE-EENLFEIITADEVH------------YFLQAATPKERTEWIKAIQM 117
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 17/88 (19%)
Query: 9 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKS----------ACLI----ENSSG 54
K+G L KQG R K+WK R FIL + Y Y + C++ NS+G
Sbjct: 20 KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNG 79
Query: 55 RYKSWKRRWF--ILNDKCLYYFEYTTDK 80
R KS + F I D+ Y+ + T K
Sbjct: 80 R-KSEEENLFEIITADEVHYFLQAATPK 106
>pdb|2I5C|A Chain A, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5
pdb|2I5C|B Chain B, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5
pdb|2I5C|C Chain C, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5
pdb|2I5F|A Chain A, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,5,6)p5
Length = 109
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKC--LYYFEYTTDKEPRGIIPLENIQVREVHDRHKP 158
K+G L KQG R K+WK R FIL + L+Y++ ++P G I L V V
Sbjct: 9 KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNG 68
Query: 159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL 209
E + FE I A + Y + AAT +E+ EWIK + +
Sbjct: 69 RKSE-EENLFEIITADEVH------------YFLQAATPKERTEWIKAIQM 106
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 17/88 (19%)
Query: 9 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKS----------ACLI----ENSSG 54
K+G L KQG R K+WK R FIL + Y Y + C++ NS+G
Sbjct: 9 KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNG 68
Query: 55 RYKSWKRRWF--ILNDKCLYYFEYTTDK 80
R KS + F I D+ Y+ + T K
Sbjct: 69 R-KSEEENLFEIITADEVHYFLQAATPK 95
>pdb|1ZM0|A Chain A, Crystal Structure Of The Carboxyl Terminal Ph Domain Of
Pleckstrin To 2.1 Angstroms
pdb|1ZM0|B Chain B, Crystal Structure Of The Carboxyl Terminal Ph Domain Of
Pleckstrin To 2.1 Angstroms
Length = 114
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKC--LYYFEYTTDKEPRGIIPLENIQVREVHDRHKP 158
K+G L KQG R K+WK R FIL + L+Y++ ++P G I L V V
Sbjct: 11 KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNG 70
Query: 159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL 209
E + FE I A + Y + AAT +E+ EWIK + +
Sbjct: 71 RKSE-EENLFEIITADEVH------------YFLQAATPKERTEWIKAIQM 108
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 17/88 (19%)
Query: 9 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKS----------ACLI----ENSSG 54
K+G L KQG R K+WK R FIL + Y Y + C++ NS+G
Sbjct: 11 KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNG 70
Query: 55 RYKSWKRRWF--ILNDKCLYYFEYTTDK 80
R KS + F I D+ Y+ + T K
Sbjct: 71 R-KSEEENLFEIITADEVHYFLQAATPK 97
>pdb|1XX0|A Chain A, Structure Of The C-Terminal Ph Domain Of Human Pleckstrin
Length = 127
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKC--LYYFEYTTDKEPRGIIPLENIQVREVHDRHKP 158
K+G L KQG R K+WK R FIL + L+Y++ ++P G I L V V
Sbjct: 24 KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNG 83
Query: 159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL 209
E + FE I A + Y + AAT +E+ EWIK + +
Sbjct: 84 RKSE-EENLFEIITADEVH------------YFLQAATPKERTEWIKAIQM 121
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 17/88 (19%)
Query: 9 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKS----------ACLI----ENSSG 54
K+G L KQG R K+WK R FIL + Y Y + C++ NS+G
Sbjct: 24 KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNG 83
Query: 55 RYKSWKRRWF--ILNDKCLYYFEYTTDK 80
R KS + F I D+ Y+ + T K
Sbjct: 84 R-KSEEENLFEIITADEVHYFLQAATPK 110
>pdb|2Y7B|A Chain A, Crystal Structure Of The Ph Domain Of Human Actin-Binding
Protein Anillin Anln
Length = 134
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 112 YKSWKRRWFILNDKCLYYFEYTTD---KEPRGIIPLENIQVREVHDRHKPHCFELFTSGF 168
+ +W RRW +L+ C+ Y+ Y D K P G I L N R++ ++ C T F
Sbjct: 20 FGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSRQIEPANREFCARRNT--F 77
Query: 169 EFIKA---CKTDSEGKVVEGKHTVYR----MSAATAEEKDEWIKCLS 208
E I + D E V + + T+ +SA T EE+D W++ L+
Sbjct: 78 ELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLN 124
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 48 LIENSSGRYKSWKRRWFILNDKCLYYFEYTTDKPFKIP 85
+ E+ SG + +W RRW +L+ C+ Y+ Y D+ K P
Sbjct: 13 IFEDVSG-FGAWHRRWCVLSGNCISYWTYPDDEKRKNP 49
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 20 YKSWKRRWFILNDKCLYYFEYTTDK 44
+ +W RRW +L+ C+ Y+ Y D+
Sbjct: 20 FGAWHRRWCVLSGNCISYWTYPDDE 44
>pdb|1V5U|A Chain A, Solution Structure Of The C-Terminal Pleckstrin Homology
Domain Of Sbf1 From Mouse
Length = 117
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 22/115 (19%)
Query: 102 EGWLWKQGGRYKSWKRRWFILNDK--CLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPH 159
EG L+K+G K WK RWF+L+ L Y+++ D E +G+I L +
Sbjct: 11 EGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEV------------ 58
Query: 160 CFELFTSGFEFIKACKTDSEGKVVEGKHT--VYRMSAATAEEKDEWI----KCLS 208
E G I A KT E + K T VY A +W+ CLS
Sbjct: 59 --EAVAPGTPTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCLS 111
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 10 EGWLWKQGGRYKSWKRRWFILN 31
EG L+K+G K WK RWF+L+
Sbjct: 11 EGILYKKGAFMKPWKARWFVLD 32
>pdb|1PLS|A Chain A, Solution Structure Of A Pleckstrin Homology Domain
Length = 113
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHC 160
+EG+L K+G + +WK W +L + + +++ +D P+G+IPL+ + C
Sbjct: 7 REGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTS-------PC 59
Query: 161 FELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIK 205
+ F F K+ K + AA EE+D W++
Sbjct: 60 QDFGKRMFVF----------KITTTKQQDHFFQAAFLEERDAWVR 94
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 9 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKS 45
+EG+L K+G + +WK W +L + + +++ +D S
Sbjct: 7 REGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNS 43
>pdb|1X1G|A Chain A, Solution Structure Of The C-Terminal Ph Domain Of Human
Pleckstrin 2
Length = 129
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 13/110 (11%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKE---PRGIIPLENIQVREVHDRHK 157
K+G+L KQG + K+WK R F+L + Y KE P G L V + D
Sbjct: 20 KQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGV 79
Query: 158 PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
P + G F KV+ T Y + A++ E+ EWI+ +
Sbjct: 80 PTGVKGNVQGNLF----------KVITKDDTHYYIQASSKAERAEWIEAI 119
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 9 KEGWLWKQGGRYKSWKRRWFIL--NDKCLYYFE 39
K+G+L KQG + K+WK R F+L + L+Y++
Sbjct: 20 KQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYD 52
>pdb|2DKP|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Protein Family A Member 5 From Human
Length = 128
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 98 NPD----KEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQV 149
NP+ + GWL+KQ K WK+RWF+L+D CL+Y+ ++ G I L + Q+
Sbjct: 16 NPNAPVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQI 72
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 5/38 (13%)
Query: 6 NPD----KEGWLWKQGGR-YKSWKRRWFILNDKCLYYF 38
NP+ + GWL+KQ K WK+RWF+L+D CL+Y+
Sbjct: 16 NPNAPVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYY 53
Score = 33.5 bits (75), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 21/25 (84%), Gaps = 1/25 (4%)
Query: 50 ENSSGRYKSWKRRWFILNDKCLYYF 74
++S+G K WK+RWF+L+D CL+Y+
Sbjct: 30 QDSTG-MKLWKKRWFVLSDLCLFYY 53
>pdb|2DN6|A Chain A, Solution Structure Of The Ph Domain Of Kiaa0640 Protein
From Human
Length = 115
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 20/108 (18%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPL-ENIQVREVHDRHKPH 159
K+G++ K+G R K+W RWF+L + Y+ K+ +G I L EN V + D+
Sbjct: 10 KQGYMMKKGHRRKNWTERWFVLKPNIISYYVSEDLKDKKGDILLDENCCVESLPDKDGKK 69
Query: 160 CFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
C F+ C + + +SA+ ++K EWI+ +
Sbjct: 70 CL--------FLVKCFDKT-----------FEISASDKKKKQEWIQAI 98
Score = 33.5 bits (75), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 9 KEGWLWKQGGRYKSWKRRWFILNDKCLYYF--EYTTDKSACLIENSSGRYKSWKRRWFIL 66
K+G++ K+G R K+W RWF+L + Y+ E DK ++ + + +S +
Sbjct: 10 KQGYMMKKGHRRKNWTERWFVLKPNIISYYVSEDLKDKKGDILLDENCCVESLPDKD--- 66
Query: 67 NDKCLYYFEYTTDKPFKIPEDD 88
KCL+ + DK F+I D
Sbjct: 67 GKKCLFLVK-CFDKTFEISASD 87
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 90/214 (42%), Gaps = 41/214 (19%)
Query: 9 KEGWLWKQGGRYKSWKRRWFILNDK--CLYYF---EYTTDKSACLIENSSGRYKSWK--- 60
+EG+LWK+G + R F+L ++ L YF + K+ IE+ + ++ K
Sbjct: 150 REGFLWKRGRDNGQFLSRKFVLTEREGALKYFNRNDAKEPKAVMKIEHLNATFQPAKIGH 209
Query: 61 --------------RRWFILND---KCLYYFEYTTDKPF-----KIPEDDGNDLMHTFF- 97
R FI ++ + + +F F P DL+
Sbjct: 210 PHGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAARFHYLQVAFPGASDADLVPKLSR 269
Query: 98 NPDKEGWLWKQGGRY-KSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQV------- 149
N KEG++ K G + + +++RWF ++D+ L YF+ D RG + + + +
Sbjct: 270 NYLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKESGYTVLHG 329
Query: 150 --REVHDRHKPHCFELFTSGFEFIKACKTDSEGK 181
H PH + T +F+ AC+T+S+ +
Sbjct: 330 FPPSTQGHHWPHGITIVTPDRKFLFACETESDQR 363
Score = 30.0 bits (66), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 17/113 (15%)
Query: 57 KSWKRRWFILNDKCLYYFEYTTD-----KPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGR 111
+ +++RWF ++D+ L YF+ D + F ++ G ++H F P +G W G
Sbjct: 286 EGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKESGYTVLHG-FPPSTQGHHWPHGIT 344
Query: 112 YKSWKRRWFIL------NDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKP 158
+ R++ + + F+ D R ++P E E H +HKP
Sbjct: 345 IVTPDRKFLFACETESDQREWVAAFQKAVD---RPMLPQE--YAVEAHFKHKP 392
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 88/214 (41%), Gaps = 41/214 (19%)
Query: 9 KEGWLWKQGGRYKSWKRRWFILNDK--CLYYF---EYTTDKSACLIENSSGRYKSWK--- 60
+EG+LWK+G + R F+L ++ L YF + K+ IE+ + ++ K
Sbjct: 148 REGFLWKRGRDNGQFLSRKFVLTEREGALKYFNRNDAKEPKAVMKIEHLNATFQPAKIGH 207
Query: 61 ----RRWFILNDKCLYYFEYTTDK------------------PFKIPEDDGNDLMHTFF- 97
+ ++ ++ F Y D P DL+
Sbjct: 208 PHGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAARFHYLQVAFPGASDADLVPKLSR 267
Query: 98 NPDKEGWLWKQGGRY-KSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQV------- 149
N KEG++ K G + + +++RWF ++D+ L YF+ D RG + + + +
Sbjct: 268 NYLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKESGYTVLHG 327
Query: 150 --REVHDRHKPHCFELFTSGFEFIKACKTDSEGK 181
H PH + T +F+ AC+T+S+ +
Sbjct: 328 FPPSTQGHHWPHGITIVTPDRKFLFACETESDQR 361
>pdb|1UPQ|A Chain A, Crystal Structure Of The Pleckstrin Homology (Ph) Domain
Of Pepp1
pdb|1UPR|A Chain A, Crystal Structure Of The Pepp1 Pleckstrin Homology Domain
In Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 123
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 102 EGWLWKQ-GGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVR 150
GWL KQ + WKRRWF+L+ CL+Y++ + ++ G + L + +R
Sbjct: 14 RGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIR 63
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 10 EGWLWKQ-GGRYKSWKRRWFILNDKCLYYFEYTTDKSAC 47
GWL KQ + WKRRWF+L+ CL+Y++ + ++S
Sbjct: 14 RGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVL 52
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Query: 50 ENSSGRYKSWKRRWFILNDKCLYYFE 75
++SSG + WKRRWF+L+ CL+Y++
Sbjct: 20 QDSSG-LRLWKRRWFVLSGHCLFYYK 44
>pdb|1WGQ|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Mouse Ethanol Decreased 4 Protein
Length = 109
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 104 WLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRH-KPHCFE 162
+L++ G K WK WF++ +K LY + + D PL V V D + + F+
Sbjct: 13 YLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVKDENSESKVFQ 72
Query: 163 LFTSGFEF 170
L G F
Sbjct: 73 LLHKGMVF 80
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 12 WLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSAC 47
+L++ G K WK WF++ +K LY + + D +A
Sbjct: 13 YLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVAAL 48
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 52 SSGRYKSWKRRWFILNDKCLYYFEYTTD 79
S G K WK WF++ +K LY + + D
Sbjct: 17 SKGSKKPWKHLWFVIKNKVLYTYAASED 44
>pdb|1U5G|A Chain A, Crystal Structure Of The Ph Domain Of Skap-Hom
pdb|1U5G|B Chain B, Crystal Structure Of The Ph Domain Of Skap-Hom
pdb|1U5G|C Chain C, Crystal Structure Of The Ph Domain Of Skap-Hom
pdb|1U5G|D Chain D, Crystal Structure Of The Ph Domain Of Skap-Hom
Length = 122
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 23/97 (23%)
Query: 115 WKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVH----DRHKPHCFELFTSGFEF 170
W++RW L+ YY+ DK+ +G ++ VR + D K CFE+
Sbjct: 37 WQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEI------- 89
Query: 171 IKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
C D +Y+ +AA+ ++ +EW++ L
Sbjct: 90 ---CAPDKR---------IYQFTAASPKDAEEWVQQL 114
>pdb|3TCA|A Chain A, Crystal Structure Of The Ras-Associating And
Pleckstrin-Homology Domains Of Riam
pdb|3TCA|B Chain B, Crystal Structure Of The Ras-Associating And
Pleckstrin-Homology Domains Of Riam
Length = 291
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 95 TFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGI---IPLEN----- 146
+ P+ EG L+ + KSWKRR+F+L +YY K R + I EN
Sbjct: 164 SIIVPELEGALYLKEDGKKSWKRRYFLLRASGIYYVPKGKTKTSRDLACFIQFENVNIYY 223
Query: 147 -IQVREVHDRHKPHCFEL 163
IQ + + HCF L
Sbjct: 224 GIQCKMKYKAPTDHCFVL 241
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 3 TFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKS----ACLIE 50
+ P+ EG L+ + KSWKRR+F+L +YY K+ AC I+
Sbjct: 164 SIIVPELEGALYLKEDGKKSWKRRYFLLRASGIYYVPKGKTKTSRDLACFIQ 215
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 35.8 bits (81), Expect = 0.016, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 24/111 (21%)
Query: 101 KEGWLW------KQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD 154
++GWL +GG K WF+L + L +++ +KE + ++ ++N+++R+V
Sbjct: 542 RKGWLTINNIGIMKGGS----KEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEK 597
Query: 155 --RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEW 203
H F LF ++E + V + ++ T EE D W
Sbjct: 598 GFMSSKHIFALF------------NTEQRNVYKDYRQLELACETQEEVDSW 636
>pdb|1U5D|A Chain A, Crystal Structure Of The Ph Domain Of Skap55
pdb|1U5D|B Chain B, Crystal Structure Of The Ph Domain Of Skap55
pdb|1U5D|C Chain C, Crystal Structure Of The Ph Domain Of Skap55
pdb|1U5D|D Chain D, Crystal Structure Of The Ph Domain Of Skap55
Length = 108
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 101 KEGWLWKQGGRYK----SWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREV---- 152
K+G+L K+ + W++RW +++ YY+ K+P+G ++ VR
Sbjct: 5 KQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPHLR 64
Query: 153 HDRHKPHCFEL 163
D K CFEL
Sbjct: 65 RDSKKESCFEL 75
>pdb|1P6S|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Human Protein Kinase B Beta (PkbAKT)
Length = 111
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 101 KEGWLWKQGGRYKSWKRRWFIL-NDKCLYYFEYTTDKEPRGIIPLENIQVREVH----DR 155
KEGWL K+G K+W+ R+F+L +D ++ + + + PL N V E +R
Sbjct: 8 KEGWLHKRGEYIKTWRPRYFLLKSDGSFIGYKERPEAPDQTLPPLNNFSVAECQLMKTER 67
Query: 156 HKPHCFEL 163
+P+ F +
Sbjct: 68 PRPNTFVI 75
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 9 KEGWLWKQGGRYKSWKRRWFIL 30
KEGWL K+G K+W+ R+F+L
Sbjct: 8 KEGWLHKRGEYIKTWRPRYFLL 29
>pdb|1U5E|A Chain A, Crystal Structure Of A N-Terminal Fragment Of Skap-Hom
Containing Both The Helical Dimerization Domain And The
Ph Domain
pdb|1U5E|B Chain B, Crystal Structure Of A N-Terminal Fragment Of Skap-Hom
Containing Both The Helical Dimerization Domain And The
Ph Domain
pdb|2OTX|A Chain A, Crystal Structure Of A N-Terminal Fragment Of Skap-Hom
Containing Both The Helical Dimerization Domain And The
Ph Domain
pdb|2OTX|B Chain B, Crystal Structure Of A N-Terminal Fragment Of Skap-Hom
Containing Both The Helical Dimerization Domain And The
Ph Domain
Length = 211
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 23/97 (23%)
Query: 115 WKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVH----DRHKPHCFELFTSGFEF 170
W++RW L+ YY+ DK+ +G ++ VR + D K CFE+
Sbjct: 126 WQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEI------- 178
Query: 171 IKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
C D +Y+ +AA+ ++ +EW++ L
Sbjct: 179 ---CAPD---------KRIYQFTAASPKDAEEWVQQL 203
>pdb|1V88|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Oxysterol-Binding Protein-Related Protein 8 (Kiaa1451
Protein)
Length = 130
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 110 GRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELF---TS 166
G KSW + W +L L ++ + + G + L ++ E + CF+LF
Sbjct: 18 GTLKSWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEIIERPSKKDGFCFKLFHPLEQ 77
Query: 167 GFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDE-WIKCLSL 209
+K K ++ G + + + Y + AT+E W+ L L
Sbjct: 78 SIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALEL 121
>pdb|2D9V|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Protein Family B Member 1 From Mouse
Length = 130
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 101 KEGWLWKQGGRYKSWKRRWFIL-NDKCLYYF--EYTTDKEPRGII--PLENIQV-REVHD 154
+ GWLW+Q + WKR WF L D L Y+ E D+E R +I + +I+V +E D
Sbjct: 10 RGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQD 69
Query: 155 RHKP 158
P
Sbjct: 70 VQPP 73
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 9 KEGWLWKQGGRYKSWKRRWFIL-NDKCLYYFEYTTDK 44
+ GWLW+Q + WKR WF L D L Y+ T +
Sbjct: 10 RGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQ 46
>pdb|2D9Z|A Chain A, Solution Structure Of The Ph Domain Of Protein Kinase C,
Nu Type From Human
Length = 129
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENI-------QVREVH 153
KEGW+ R KR ++ L+ KCL F+ + + IPL I +
Sbjct: 10 KEGWMVHYTSRDNLRKRHYWRLDSKCLTLFQNESGSKYYKEIPLSEILRISSPRDFTNIS 69
Query: 154 DRHKPHCFELFT 165
PHCFE+ T
Sbjct: 70 QGSNPHCFEIIT 81
>pdb|1U5F|A Chain A, Crystal Structure Of The Ph Domain Of Skap-Hom With 8
Vector-Derived N-Terminal Residues
Length = 148
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 23/97 (23%)
Query: 115 WKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVH----DRHKPHCFELFTSGFEF 170
W++RW L+ YY+ DK+ +G ++ VR + D K CFE+
Sbjct: 37 WQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEI------- 89
Query: 171 IKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
C D +Y+ +AA+ ++ +EW++ L
Sbjct: 90 ---CAPDKR---------IYQFTAASPKDAEEWVQQL 114
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
Length = 743
Score = 35.0 bits (79), Expect = 0.032, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 24/111 (21%)
Query: 101 KEGWLW------KQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD 154
++GWL +GG K WF+L + L +++ +KE ++ ++N+++R+V
Sbjct: 519 RKGWLTINNIGIMKGGS----KEYWFVLTAENLSWYKDDEEKEKEYMLSVDNLKLRDVEK 574
Query: 155 --RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEW 203
H F LF ++E + V + ++ T EE D W
Sbjct: 575 GFMSSKHIFALF------------NTEQRNVYKDYRQLELACETQEEVDSW 613
>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex
With N-(4-
(5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h-
Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide
Length = 446
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLY--YFEYTTDKEPRGIIPLENIQVREVH----D 154
KEGWL K+G K+W+ R+F+L + + Y E D + R PL N V + +
Sbjct: 8 KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQRE-APLNNFSVAQCQLMKTE 66
Query: 155 RHKPHCF 161
R +P+ F
Sbjct: 67 RPRPNTF 73
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 9 KEGWLWKQGGRYKSWKRRWFILND 32
KEGWL K+G K+W+ R+F+L +
Sbjct: 8 KEGWLHKRGEYIKTWRPRYFLLKN 31
>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric
Inhibitor
Length = 446
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLY--YFEYTTDKEPRGIIPLENIQVREVH----D 154
KEGWL K+G K+W+ R+F+L + + Y E D + R PL N V + +
Sbjct: 11 KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQRE-APLNNFSVAQCQLMKTE 69
Query: 155 RHKPHCF 161
R +P+ F
Sbjct: 70 RPRPNTF 76
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 9 KEGWLWKQGGRYKSWKRRWFILND 32
KEGWL K+G K+W+ R+F+L +
Sbjct: 11 KEGWLHKRGEYIKTWRPRYFLLKN 34
>pdb|4GMV|A Chain A, Crystal Structure Of The Coiled-Coil, Ra And Ph Domains Of
Lamellipodin
pdb|4GMV|B Chain B, Crystal Structure Of The Coiled-Coil, Ra And Ph Domains Of
Lamellipodin
Length = 281
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 99 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGII 142
P+ EG LW + KSWK+R+F+L +YY K R ++
Sbjct: 158 PEIEGVLWLKDDGKKSWKKRYFLLRASGIYYVPKGKAKVSRDLV 201
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 7 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYF 38
P+ EG LW + KSWK+R+F+L +YY
Sbjct: 158 PEIEGVLWLKDDGKKSWKKRYFLLRASGIYYV 189
>pdb|4GN1|A Chain A, Crystal Structure Of The Ra And Ph Domains Of Lamellipodin
pdb|4GN1|B Chain B, Crystal Structure Of The Ra And Ph Domains Of Lamellipodin
pdb|4GN1|C Chain C, Crystal Structure Of The Ra And Ph Domains Of Lamellipodin
pdb|4GN1|D Chain D, Crystal Structure Of The Ra And Ph Domains Of Lamellipodin
Length = 255
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 99 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGII 142
P+ EG LW + KSWK+R+F+L +YY K R ++
Sbjct: 132 PEIEGVLWLKDDGKKSWKKRYFLLRASGIYYVPKGKAKVSRDLV 175
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 7 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYF 38
P+ EG LW + KSWK+R+F+L +YY
Sbjct: 132 PEIEGVLWLKDDGKKSWKKRYFLLRASGIYYV 163
>pdb|2UZS|A Chain A, A Transforming Mutation In The Pleckstrin Homology Domain
Of Akt1 In Cancer (Akt1-Ph_e17k)
Length = 125
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLY--YFEYTTDKEPRGIIPLENIQVREVH----D 154
KEGWL K+G K+W+ R+F+L + + Y E D + R PL N V + +
Sbjct: 10 KEGWLHKRGKYIKTWRPRYFLLKNDGTFIGYKERPQDVDQRE-APLNNFSVAQCQLMKTE 68
Query: 155 RHKPHCF 161
R +P+ F
Sbjct: 69 RPRPNTF 75
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 9 KEGWLWKQGGRYKSWKRRWFILND 32
KEGWL K+G K+W+ R+F+L +
Sbjct: 10 KEGWLHKRGKYIKTWRPRYFLLKN 33
>pdb|2UZR|A Chain A, A Transforming Mutation In The Pleckstrin Homology Domain
Of Akt1 In Cancer (Akt1-Ph_e17k)
Length = 124
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLY--YFEYTTDKEPRGIIPLENIQVREVH----D 154
KEGWL K+G K+W+ R+F+L + + Y E D + R PL N V + +
Sbjct: 9 KEGWLHKRGKYIKTWRPRYFLLKNDGTFIGYKERPQDVDQRE-APLNNFSVAQCQLMKTE 67
Query: 155 RHKPHCF 161
R +P+ F
Sbjct: 68 RPRPNTF 74
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 9 KEGWLWKQGGRYKSWKRRWFILND 32
KEGWL K+G K+W+ R+F+L +
Sbjct: 9 KEGWLHKRGKYIKTWRPRYFLLKN 32
>pdb|1UNR|A Chain A, Crystal Structure Of The Ph Domain Of Pkb Alpha In Complex
With A Sulfate Molecule
pdb|1UNQ|A Chain A, High Resolution Crystal Structure Of The Pleckstrin
Homology Domain Of Protein Kinase BAKT BOUND TO INS
(1,3,4,5)-Tetrakisphophate
Length = 125
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLY--YFEYTTDKEPRGIIPLENIQVREVH----D 154
KEGWL K+G K+W+ R+F+L + + Y E D + R PL N V + +
Sbjct: 10 KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQRE-APLNNFSVAQCQLMKTE 68
Query: 155 RHKPHCF 161
R +P+ F
Sbjct: 69 RPRPNTF 75
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 9 KEGWLWKQGGRYKSWKRRWFILND 32
KEGWL K+G K+W+ R+F+L +
Sbjct: 10 KEGWLHKRGEYIKTWRPRYFLLKN 33
>pdb|2UVM|A Chain A, Structure Of Pkbalpha Ph Domain In Complex With A Novel
Inositol Headgroup Surrogate, Benzene 1,2,3,4-
Tetrakisphosphate
Length = 123
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLY--YFEYTTDKEPRGIIPLENIQVREVH----D 154
KEGWL K+G K+W+ R+F+L + + Y E D + R PL N V + +
Sbjct: 8 KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQRE-APLNNFSVAQCQLMKTE 66
Query: 155 RHKPHCF 161
R +P+ F
Sbjct: 67 RPRPNTF 73
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 9 KEGWLWKQGGRYKSWKRRWFILND 32
KEGWL K+G K+W+ R+F+L +
Sbjct: 8 KEGWLHKRGEYIKTWRPRYFLLKN 31
>pdb|1H10|A Chain A, High Resolution Structure Of The Pleckstrin Homology
Domain Of Protein Kinase BAKT BOUND TO
Ins(1,3,4,5)-Tetrakisphophate
Length = 125
Score = 34.3 bits (77), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLY--YFEYTTDKEPRGIIPLENIQVREVH----D 154
KEGWL K+G K+W+ R+F+L + + Y E D + R PL N V + +
Sbjct: 10 KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQRE-APLNNFSVAQCQLXKTE 68
Query: 155 RHKPHCF 161
R +P+ F
Sbjct: 69 RPRPNTF 75
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 9 KEGWLWKQGGRYKSWKRRWFILND 32
KEGWL K+G K+W+ R+F+L +
Sbjct: 10 KEGWLHKRGEYIKTWRPRYFLLKN 33
>pdb|1UNP|A Chain A, Crystal Structure Of The Pleckstrin Homology Domain Of Pkb
Alpha
Length = 121
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLY--YFEYTTDKEPRGIIPLENIQVREVH----D 154
KEGWL K+G K+W+ R+F+L + + Y E D + R PL N V + +
Sbjct: 8 KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQRE-APLNNFSVAQCQLMKTE 66
Query: 155 RHKPHCF 161
R +P+ F
Sbjct: 67 RPRPNTF 73
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 9 KEGWLWKQGGRYKSWKRRWFILND 32
KEGWL K+G K+W+ R+F+L +
Sbjct: 8 KEGWLHKRGEYIKTWRPRYFLLKN 31
>pdb|2DHI|A Chain A, Solution Structure Of The Ph Domain Of Evectin-2 From
Mouse
Length = 120
Score = 33.5 bits (75), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 101 KEGWLWKQGGRYKSWKRRWFIL-NDKCLYYFEYTTDK--EPRGIIPLENIQVREVHD 154
K GWL +Q K WK+ WF L +D L Y++ T + E + +P++ I +R H+
Sbjct: 10 KSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQSIEDKVHMPVDCINIRTGHE 66
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 9 KEGWLWKQGGRYKSWKRRWFIL-NDKCLYYFEYTTDKS 45
K GWL +Q K WK+ WF L +D L Y++ T +S
Sbjct: 10 KSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQS 47
>pdb|2COA|A Chain A, Solution Structure Of The Ph Domain Of Protein Kinase C,
D2 Type From Human
Length = 125
Score = 33.5 bits (75), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVRE-------VH 153
+EGW+ + KR ++ L+ KC+ F+ T IPL I E V
Sbjct: 10 REGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTNRYYKEIPLSEILTVESAQNFSLVP 69
Query: 154 DRHKPHCFELFTSGFEF 170
PHCFE+ T+ +
Sbjct: 70 PGTNPHCFEIVTANATY 86
>pdb|3AJ4|A Chain A, Crystal Structure Of The Ph Domain Of Evectin-2 From Human
Complexed With O-Phospho-L-Serine
pdb|3AJ4|B Chain B, Crystal Structure Of The Ph Domain Of Evectin-2 From Human
Complexed With O-Phospho-L-Serine
pdb|3VIA|A Chain A, Crystal Structure Of The Ph Domain Of Evectin-2 From Human
pdb|3VIA|B Chain B, Crystal Structure Of The Ph Domain Of Evectin-2 From Human
Length = 112
Score = 33.5 bits (75), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 101 KEGWLWKQGGRYKSWKRRWFIL-NDKCLYYFEYTTDK--EPRGIIPLENIQVR---EVHD 154
K GWL +Q K WK+ WF L +D L Y++ T + E + +P++ I +R E D
Sbjct: 7 KSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQECRD 66
Query: 155 RHKP 158
P
Sbjct: 67 TQPP 70
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 9 KEGWLWKQGGRYKSWKRRWFIL-NDKCLYYFEYTT 42
K GWL +Q K WK+ WF L +D L Y++ T
Sbjct: 7 KSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQT 41
>pdb|2D9X|A Chain A, Solution Structure Of The Ph Domain Of Oxysterol Binding
Protein-Related Protein 11 From Human
Length = 120
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 103 GWLWKQGGRYKSWKRRWFILNDKC--LYYF--EYTTDKEPRGIIPLENIQVREVHDRHKP 158
G+L K W+ R+F+LN++ L YF E + +++PRG + L + +
Sbjct: 12 GYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAVISPSDE--DS 69
Query: 159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAAT 196
H F + + E K TD++ E +H V R+ T
Sbjct: 70 HTFTVNAASGEQYKLRATDAK----ERQHWVSRLQICT 103
>pdb|1R8M|E Chain E, Sec7 Domain Of The Arf Exchange Factor Arno With Brefeldin
A- Sensitizing Mutations
pdb|1S9D|E Chain E, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
Length = 203
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 12/71 (16%)
Query: 32 DKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFILN-----------DKCLYYFEYTTDK 80
D C Y Y+ + N + R K R+ +N + ++ ++
Sbjct: 134 DTC-YVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDSIRNE 192
Query: 81 PFKIPEDDGND 91
PFKIPEDDGND
Sbjct: 193 PFKIPEDDGND 203
>pdb|1R8Q|E Chain E, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|F Chain F, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
Length = 203
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 12/71 (16%)
Query: 32 DKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFILN-----------DKCLYYFEYTTDK 80
D C Y Y+ + N + R K R+ +N + ++ ++
Sbjct: 134 DTC-YVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDSIRNE 192
Query: 81 PFKIPEDDGND 91
PFKIPEDDGND
Sbjct: 193 PFKIPEDDGND 203
>pdb|1R8S|E Chain E, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
Length = 203
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 12/71 (16%)
Query: 32 DKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFILN-----------DKCLYYFEYTTDK 80
D C Y Y+ + N + R K R+ +N + ++ ++
Sbjct: 134 DTC-YVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDSIRNE 192
Query: 81 PFKIPEDDGND 91
PFKIPEDDGND
Sbjct: 193 PFKIPEDDGND 203
>pdb|2DHK|A Chain A, Solution Structure Of The Ph Domain Of Tbc1 Domain Family
Member 2 Protein From Human
Length = 119
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 27/112 (24%)
Query: 103 GWLWKQGGR--YKSWKRRWFILND-KCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPH 159
G+L K GG+ + WK RWF ++ KC Y+ T PL++I
Sbjct: 12 GYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDAN----PLDSI------------ 55
Query: 160 CFELFTSGFEFIKACKTDSEGKVVEGK--HTVYRMSAATAEEKDEWIKCLSL 209
+L ++ F+ CK D+E + E K V + AAT + W++ L +
Sbjct: 56 --DLSSAVFD----CKADAEEGIFEIKTPSRVITLKAATKQAMLYWLQQLQM 101
>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5
Length = 434
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 22/109 (20%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK-EPRGIIPLENIQVREVHDRHKPH 159
KEG L K G+ + R F+ ND LY + K + + + N +V P+
Sbjct: 246 KEGTLXKVTGKNR-RPRHLFLXNDVLLYTYPQKDGKYRLKNTLAVANXKVSRPVXEKVPY 304
Query: 160 CFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
++ TS + +SA++ E+DEW CLS
Sbjct: 305 ALKIETS--------------------ESCLXLSASSCAERDEWYGCLS 333
>pdb|2KCJ|A Chain A, Solution Structure Of Fapp1 Ph Domain
Length = 108
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 23/108 (21%)
Query: 102 EGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD--KEPRGIIPLENIQVREVHDRHKPH 159
EG L+K W+ RWF+L++ L Y++ D K +G I + +++ VH
Sbjct: 10 EGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKGSKGSIKMAVCEIK-VHSADNTR 68
Query: 160 CFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
EL ++ G+ Y M A A E+ W+ L
Sbjct: 69 -MEL------------------IIPGEQHFY-MKAVNAAERQRWLVAL 96
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 10 EGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD 43
EG L+K W+ RWF+L++ L Y++ D
Sbjct: 10 EGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDD 43
>pdb|3ZYS|C Chain C, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|F Chain F, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 113
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 14/90 (15%)
Query: 116 KRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD--RHKPHCFELFTSGFEFIKA 173
K WF+L + L +++ +KE + ++ ++N+++R+V H F LF
Sbjct: 22 KEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALF--------- 72
Query: 174 CKTDSEGKVVEGKHTVYRMSAATAEEKDEW 203
++E + V + ++ T EE D W
Sbjct: 73 ---NTEQRNVYKDYRQLELACETQEEVDSW 99
>pdb|1DYN|A Chain A, Crystal Structure At 2.2 Angstroms Resolution Of The
Pleckstrin Homology Domain From Human Dynamin
pdb|1DYN|B Chain B, Crystal Structure At 2.2 Angstroms Resolution Of The
Pleckstrin Homology Domain From Human Dynamin
Length = 125
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 21/120 (17%)
Query: 93 MHTFFNPD-----KEGWLWKQ--GGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLE 145
M T N D ++GWL G K WF+L + L +++ +KE + ++ ++
Sbjct: 1 MKTSGNQDEILVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVD 60
Query: 146 NIQVREVHD--RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEW 203
N+++R+V H F LF ++E + V + ++ T EE D W
Sbjct: 61 NLKLRDVEKGFMSSKHIFALF------------NTEQRNVYKDYRQLELACETQEEVDSW 108
>pdb|2DYN|A Chain A, Dynamin (Pleckstrin Homology Domain) (Dynph)
pdb|2DYN|B Chain B, Dynamin (Pleckstrin Homology Domain) (Dynph)
Length = 122
Score = 30.0 bits (66), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 14/90 (15%)
Query: 116 KRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD--RHKPHCFELFTSGFEFIKA 173
K WF+L + L +++ +KE + ++ ++N+++R+V H F LF
Sbjct: 31 KEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALF--------- 81
Query: 174 CKTDSEGKVVEGKHTVYRMSAATAEEKDEW 203
++E + V + ++ T EE D W
Sbjct: 82 ---NTEQRNVYKDYRQLELACETQEEVDSW 108
>pdb|2LUL|A Chain A, Solution Nmr Structure Of Ph Domain Of Tyrosine-Protein
Kinase Tec From Homo Sapiens, Northeast Structural
Genomics Consortium (Nesg) Target Hr3504c
Length = 164
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 19/117 (16%)
Query: 97 FNPDKEGWLWKQGGRYK-----SWKRRWFILNDKCLYYFEYTTDKEPR-GIIPLENIQVR 150
FN E L K+ + K ++K R F+L L Y+E +K+ R G I
Sbjct: 13 FNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKYRKGFI-------- 64
Query: 151 EVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
D K C E+ + I C+ +VV +T+Y + A + + +D W+K L
Sbjct: 65 ---DVSKIKCVEIVKNDDGVI-PCQNKYPFQVVHDANTLY-IFAPSPQSRDLWVKKL 116
>pdb|2YS1|A Chain A, Solution Structure Of The Ph Domain Of Dynamin-2 From
Human
Length = 113
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 116 KRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD--RHKPHCFELFTS 166
K WF+L + L +++ +KE + ++PL+N+++R+V H F +F +
Sbjct: 27 KEYWFVLTAESLSWYKDEEEKEKKYMLPLDNLKIRDVEKGFMSNKHVFAIFNT 79
>pdb|2COD|A Chain A, Solution Structure Of The N-Terminal Ph Domain Of Arap2
Protein From Human
Length = 115
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 105 LWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELF 164
L QG R +++RW + + Y+ + +GIIPL I V +K FE+
Sbjct: 17 LSPQGKRM--FQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRVQGDNK---FEVV 71
Query: 165 TSGFEFI 171
T+ F+
Sbjct: 72 TTQRTFV 78
>pdb|2X18|A Chain A, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|B Chain B, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|C Chain C, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|D Chain D, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|E Chain E, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|F Chain F, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|G Chain G, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|H Chain H, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
Length = 119
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVH----DRH 156
KEGW+ K+G K+W+ R+F+L + ++ PL N V + +R
Sbjct: 9 KEGWVQKRGEYIKNWRPRYFLLKTDGSFIGYKEKPQDVDLPYPLNNFSVAKCQLMKTERP 68
Query: 157 KPHCF 161
KP+ F
Sbjct: 69 KPNTF 73
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 9 KEGWLWKQGGRYKSWKRRWFIL 30
KEGW+ K+G K+W+ R+F+L
Sbjct: 9 KEGWVQKRGEYIKNWRPRYFLL 30
>pdb|1JC9|A Chain A, Tachylectin 5a From Tachypleus Tridentatus (Japanese
Horseshoe Crab)
Length = 269
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 72/195 (36%), Gaps = 33/195 (16%)
Query: 14 WKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFILNDKCLYY 73
++ G Y+ W + W + +Y C +E G + +RR N +Y
Sbjct: 57 YRSSGGYRIWPKSWMTVGTLNVY----------CDMETDGGGWTVIQRRGNYGNPSDYFY 106
Query: 74 FEYTTDK-PFKIPEDD---GNDLMHTFFNP----------DKEGWLWKQGGRYKSWKRRW 119
+ K F E D GND + N DKE RY ++ W
Sbjct: 107 KPWKNYKLGFGNIEKDFWLGNDRIFALTNQRNYMIRFDLKDKE-----NDTRYAIYQDFW 161
Query: 120 FILNDK--CLYYFEYTTDKEPR-GIIPLENIQ-VREVHDRHKPHCFELFTSGFEFIKACK 175
D CL+ Y+ D G N + + HD H+ HC + + G+ + + +
Sbjct: 162 IENEDYLYCLHIGNYSGDAGNSFGRHNGHNFSTIDKDHDTHETHCAQTYKGGWWYDRCHE 221
Query: 176 TDSEGKVVEGKHTVY 190
++ G + G+H Y
Sbjct: 222 SNLNGLYLNGEHNSY 236
>pdb|3RCP|A Chain A, Crystal Structure Of The Fapp1 Pleckstrin Homology
Domain
Length = 103
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 10 EGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD 43
EG L+K W+ RWF+L++ L Y++ D
Sbjct: 2 EGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDD 35
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 102 EGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD 135
EG L+K W+ RWF+L++ L Y++ D
Sbjct: 2 EGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDD 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.487
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,048,362
Number of Sequences: 62578
Number of extensions: 374620
Number of successful extensions: 939
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 739
Number of HSP's gapped (non-prelim): 169
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)