RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17820
(210 letters)
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide,
pleckst homology domain, guanine-nucleotide releasing
factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus
musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Length = 347
Score = 162 bits (412), Expect = 3e-49
Identities = 90/132 (68%), Positives = 109/132 (82%), Gaps = 2/132 (1%)
Query: 78 TDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKE 137
++PFKIPEDDGNDL +TFFNPD+EGWL K GGR K+WKRRWFIL D CLYYFEYTTDKE
Sbjct: 192 KNEPFKIPEDDGNDLTYTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKE 251
Query: 138 PRGIIPLENIQVREVHDRHKPHCFELFTS--GFEFIKACKTDSEGKVVEGKHTVYRMSAA 195
PRGIIPLEN+ +REV D KP+CFEL+ + IKACKT+++G+VVEG H VYR+SA
Sbjct: 252 PRGIIPLENLSIREVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAP 311
Query: 196 TAEEKDEWIKCL 207
+ EEK+EW+K +
Sbjct: 312 SPEEKEEWMKSI 323
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus}
SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A*
1u29_A* 1u27_A*
Length = 127
Score = 144 bits (364), Expect = 1e-44
Identities = 78/116 (67%), Positives = 94/116 (81%), Gaps = 2/116 (1%)
Query: 95 TFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD 154
TFFNPD+EGWL K GGR K+WKRRWFIL D CLYYFEYTTDKEPRGIIPLEN+ +REV D
Sbjct: 1 TFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLD 60
Query: 155 RHKPHCFELFTSG--FEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
KP+CFEL+ + IKACKT+++G+VVEG H VYR+SA + EEK+EW+K +
Sbjct: 61 PRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIK 116
Score = 77.0 bits (189), Expect = 2e-18
Identities = 35/44 (79%), Positives = 37/44 (84%)
Query: 3 TFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA 46
TFFNPD+EGWL K GGR K+WKRRWFIL D CLYYFEYTTDK
Sbjct: 1 TFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEP 44
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain,
phosphatidylinositol binding, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 118
Score = 120 bits (303), Expect = 1e-35
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 15/114 (13%)
Query: 98 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD--- 154
P K GWL KQ K+W++R+F+L + LYY++ D +P+G + L ++E+
Sbjct: 7 GPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPE 66
Query: 155 RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
FE+ + ++ + Y + A++ E +EW+K L
Sbjct: 67 EAGKFVFEIIPASWDQNRM------------GQDSYVLMASSQAEMEEWVKFLR 108
Score = 71.7 bits (176), Expect = 1e-16
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 6 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK 44
P K GWL KQ K+W++R+F+L + LYY++ D
Sbjct: 7 GPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDT 45
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides;
pleckstrin, inositol tetrakisphosphate signal
transduction protein, adaptor protein; HET: 4IP; 1.80A
{Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Length = 126
Score = 115 bits (289), Expect = 3e-33
Identities = 35/111 (31%), Positives = 47/111 (42%), Gaps = 21/111 (18%)
Query: 98 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQ-VREVHDRH 156
KEG+L KQGG K+WK RWF L+ L YF+ EP I+ L V+ + +
Sbjct: 17 LGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQE 76
Query: 157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
+ +CF L + + A T E DEWIK L
Sbjct: 77 RVNCFCLVFP--------------------FRTFYLCAKTGVEADEWIKIL 107
Score = 69.4 bits (170), Expect = 1e-15
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 6 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK 44
KEG+L KQGG K+WK RWF L+ L YF+
Sbjct: 17 LGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSP 55
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 113
Score = 112 bits (282), Expect = 2e-32
Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 21/113 (18%)
Query: 98 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD--R 155
+EG+L K+G + +WK W +L + + +++ +D P+G+IPL+ +
Sbjct: 4 KRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFG 63
Query: 156 HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
+ F++ T+ K + AA EE+D W++ ++
Sbjct: 64 KRMFVFKITTT-------------------KQQDHFFQAAFLEERDAWVRDIN 97
Score = 67.4 bits (165), Expect = 5e-15
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 6 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA 46
+EG+L K+G + +WK W +L + + +++ +D S
Sbjct: 4 KRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSP 44
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH
domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 117
Score = 112 bits (282), Expect = 2e-32
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 23/115 (20%)
Query: 98 NPDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVH--- 153
K GWL+KQ K W +RWF+L D+CL+Y++ ++ G IPL + +V V
Sbjct: 10 PVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSD 69
Query: 154 DRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
+ + H F+ +G Y SA + EE++ WI+ +
Sbjct: 70 NISRKHTFKAEHAG-------------------VRTYFFSAESPEEQEAWIQAMG 105
Score = 67.4 bits (165), Expect = 6e-15
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 6 NPDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKSA 46
K GWL+KQ K W +RWF+L D+CL+Y++ ++S
Sbjct: 10 PVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESI 51
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 129
Score = 113 bits (283), Expect = 2e-32
Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 13/114 (11%)
Query: 98 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKE---PRGIIPLENIQVREVHD 154
K+G+L KQG + K+WK R F+L + Y KE P G L V + D
Sbjct: 17 TVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALED 76
Query: 155 RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
P + G F KV+ T Y + A++ E+ EWI+ +
Sbjct: 77 NGVPTGVKGNVQGNLF----------KVITKDDTHYYIQASSKAERAEWIEAIK 120
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Length = 129
Score = 112 bits (282), Expect = 3e-32
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 15/113 (13%)
Query: 98 NPDKEGWLWKQGGRYKSWKRRWFIL--NDKCLYYFEYTTDKEPRGIIPLENIQVREVHDR 155
K+G L KQG R K+WK R FIL + L+Y++ ++P G I L V V
Sbjct: 17 VIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESN 76
Query: 156 HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
+ + ++ +++ Y + AAT +E+ EWIK +
Sbjct: 77 SNG-------------RKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQ 116
Score = 65.2 bits (159), Expect = 6e-14
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 6 NPDKEGWLWKQGGRYKSWKRRWFIL--NDKCLYYFEYTTDK 44
K+G L KQG R K+WK R FIL + L+Y++ +
Sbjct: 17 VIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAE 57
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport,
pleckstrin homology domain, phosphatidylinositol
binding, structural genomics; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 130
Score = 112 bits (281), Expect = 3e-32
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHC 160
WL K G KSW + W +L L ++ + + G + L ++ E + C
Sbjct: 10 MADWL-KIRGTLKSWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEIIERPSKKDGFC 68
Query: 161 FELFTSGFEFIK---ACKTDSEGKVVEGKHTVYRM-SAATAEEKDEWIKCLSL 209
F+LF + I K ++ G + + + Y + A + + W+ L L
Sbjct: 69 FKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALEL 121
Score = 56.3 bits (135), Expect = 1e-10
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 9 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSAC 47
WL K G KSW + W +L L ++ +
Sbjct: 10 MADWL-KIRGTLKSWTKLWCVLKPGVLLIYKTQKNGQWV 47
Score = 43.9 bits (103), Expect = 3e-06
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 54 GRYKSWKRRWFILNDKCLYYFEYTTDK 80
G KSW + W +L L ++ +
Sbjct: 18 GTLKSWTKLWCVLKPGVLLIYKTQKNG 44
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Length = 228
Score = 114 bits (287), Expect = 7e-32
Identities = 34/173 (19%), Positives = 66/173 (38%), Gaps = 45/173 (26%)
Query: 41 TTDKSACLIENSSGRYKSWKRRWFILNDKCLYYFEYTTDKPFKIPEDDGNDLMHTFFNPD 100
+ + + G SWKRRW +L D+ +F +
Sbjct: 19 GSPYFHSFLYMNGGLMNSWKRRWCVLKDETFLWFRSKQE-------------------AL 59
Query: 101 KEGWLWKQGG-----RYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDR 155
K+GWL GG ++WK+RWF+L L YFE ++++ +G + + + + +
Sbjct: 60 KQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKLKGTVEVRSAKEIIDNTN 119
Query: 156 HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
K + ++ + +T + + A + E+ +W LS
Sbjct: 120 -KENGIDIIMAD-------RT-------------FHLIAESPEDASQWFSVLS 151
Score = 61.9 bits (150), Expect = 5e-12
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 6 NPDKEGWLWKQGG-----RYKSWKRRWFILNDKCLYYFEYTTDKSA 46
K+GWL GG ++WK+RWF+L L YFE +++
Sbjct: 57 EALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKL 102
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4;
pleckstrin homoloy domain, signal transduction,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 109
Score = 110 bits (278), Expect = 8e-32
Identities = 25/112 (22%), Positives = 36/112 (32%), Gaps = 20/112 (17%)
Query: 98 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRH- 156
G+L++ G K WK WF++ +K LY + + D PL V V D +
Sbjct: 7 GSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVKDENS 66
Query: 157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
+ F+L G Y A A WI
Sbjct: 67 ESKVFQLLHKG-------------------MVFYVFKADDAHSTQRWIDAFQ 99
Score = 67.0 bits (164), Expect = 7e-15
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 6 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA 46
G+L++ G K WK WF++ +K LY + + D +A
Sbjct: 7 GSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVAA 47
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain,
PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 122
Score = 110 bits (276), Expect = 2e-31
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 23/115 (20%)
Query: 98 NPDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVH--- 153
K GWL+KQ K W +RWF+L D+CL+Y++ ++ G IPL + +V V
Sbjct: 21 PVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSD 80
Query: 154 DRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
+ + H F+ +G Y SA + EE++ WI+ +
Sbjct: 81 NISRKHTFKAEHAG-------------------VRTYFFSAESPEEQEAWIQAMG 116
Score = 65.9 bits (161), Expect = 3e-14
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 6 NPDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKSA 46
K GWL+KQ K W +RWF+L D+CL+Y++ ++S
Sbjct: 21 PVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESI 62
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid
binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2i5c_A* 1zm0_A
Length = 109
Score = 108 bits (271), Expect = 8e-31
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 15/110 (13%)
Query: 101 KEGWLWKQGGRYKSWKRRWFIL--NDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKP 158
K+G L KQG R K+WK R FIL + L+Y++ ++P G I L V V
Sbjct: 9 KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNG 68
Query: 159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
+ + ++ +++ Y + AAT +E+ EWIK +
Sbjct: 69 -------------RKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQ 105
Score = 62.0 bits (151), Expect = 5e-13
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 9 KEGWLWKQGGRYKSWKRRWFIL--NDKCLYYFEYTTDK 44
K+G L KQG R K+WK R FIL + L+Y++ +
Sbjct: 9 KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAE 46
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain,
pleckstrin homology domain-containing protein family A
member 5; NMR {Homo sapiens}
Length = 128
Score = 107 bits (270), Expect = 2e-30
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 23/115 (20%)
Query: 98 NPDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREV---H 153
+ GWL+KQ K WK+RWF+L+D CL+Y+ ++ G I L + Q+ +
Sbjct: 20 PVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIALLTSED 79
Query: 154 DRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
++ + F+ Y T +E + W+K +
Sbjct: 80 HINRKYAFKAAHPN-------------------MRTYYFCTDTGKEMELWMKAML 115
Score = 66.7 bits (163), Expect = 1e-14
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 6 NPDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKSA 46
+ GWL+KQ K WK+RWF+L+D CL+Y+ ++
Sbjct: 20 PVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGI 61
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid
degradation, phosphatidylinositol (3, 4)-bisphosphate,
signalling; HET: CIT; 1.40A {Homo sapiens} SCOP:
b.55.1.1
Length = 125
Score = 107 bits (269), Expect = 2e-30
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 24/112 (21%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENI----QVREVHDRH 156
K G+ KQG K+WKRR+F L++ + YF+ +KEP +IPL+ + + ++
Sbjct: 16 KAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMM 75
Query: 157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
+ + FE+ T+ + + A + EE WIK +S
Sbjct: 76 RDNLFEIVTT--------------------SRTFYVQADSPEEMHSWIKAVS 107
Score = 68.3 bits (167), Expect = 3e-15
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 9 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK 44
K G+ KQG K+WKRR+F L++ + YF+ +K
Sbjct: 16 KAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEK 51
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 115
Score = 106 bits (266), Expect = 6e-30
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 22/111 (19%)
Query: 100 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPL-ENIQVREVHDRH-K 157
K+G++ K+G R K+W RWF+L + Y+ K+ +G I L EN V + D+ K
Sbjct: 9 LKQGYMMKKGHRRKNWTERWFVLKPNIISYYVSEDLKDKKGDILLDENCCVESLPDKDGK 68
Query: 158 PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
F + + +SA+ ++K EWI+ +
Sbjct: 69 KCLFLVKCF--------------------DKTFEISASDKKKKQEWIQAIH 99
Score = 65.5 bits (160), Expect = 2e-14
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 8 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK 44
K+G++ K+G R K+W RWF+L + Y+ K
Sbjct: 9 LKQGYMMKKGHRRKNWTERWFVLKPNIISYYVSEDLK 45
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction;
1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Length = 123
Score = 105 bits (263), Expect = 2e-29
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 23/114 (20%)
Query: 99 PDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREV---HD 154
GWL KQ + WKRRWF+L+ CL+Y++ + ++ G + L + +R
Sbjct: 11 VHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPGAP 70
Query: 155 RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
R + F G Y ++A T E+ W++ L
Sbjct: 71 RGRRFTFTAEHPGMR-------------------TYVLAADTLEDLRGWLRALG 105
Score = 66.3 bits (162), Expect = 1e-14
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 7 PDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKSAC 47
GWL KQ + WKRRWF+L+ CL+Y++ + ++S
Sbjct: 11 VHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVL 52
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain,
signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Length = 108
Score = 103 bits (259), Expect = 5e-29
Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 27/119 (22%)
Query: 98 NPDKEGWLWKQGGRY----KSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREV- 152
+ K+G+L K+ + W++RW +++ YY+ K+P+G ++ VR
Sbjct: 2 SVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAP 61
Query: 153 ---HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
D K CFEL + Y +A + E +W+ +S
Sbjct: 62 HLRRDSKKESCFELTSQD-------------------RRTYEFTATSPAEARDWVDQIS 101
Score = 60.5 bits (147), Expect = 2e-12
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 6 NPDKEGWLWKQGGRY----KSWKRRWFILNDKCLYYFEYTTDKSA 46
+ K+G+L K+ + W++RW +++ YY+ K
Sbjct: 2 SVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQP 46
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 117
Score = 102 bits (255), Expect = 3e-28
Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 18/115 (15%)
Query: 98 NPDKEGWLWKQGGRYKSWKRRWFIL--NDKCLYYFEYTTDKEPRGIIPLENIQVREVHDR 155
EG L+K+G K WK RWF+L L Y+++ D E +G+I L ++
Sbjct: 7 GRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGT- 65
Query: 156 HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHT--VYRMSAATAEEKDEWIKCLS 208
I A KT E + K T VY A +W+ +
Sbjct: 66 -------------PTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQ 107
Score = 62.1 bits (151), Expect = 5e-13
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 6 NPDKEGWLWKQGGRYKSWKRRWFIL--NDKCLYYFEYTTDK 44
EG L+K+G K WK RWF+L L Y+++ D
Sbjct: 7 GRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDT 47
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 101 bits (254), Expect = 3e-28
Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 26/115 (22%)
Query: 101 KEGWLWKQGGRY----KSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQ---VREVH 153
KEG L + G + WK + +L++ LY + TD P + + Q R +
Sbjct: 2 KEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPLLSVNMGGEQCGGCRRAN 61
Query: 154 DRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
+PH F++ S +SA + E EW++ L
Sbjct: 62 TTDRPHAFQVILSD-------------------RPCLELSAESEAEMAEWMQHLC 97
Score = 57.9 bits (140), Expect = 2e-11
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 9 KEGWLWKQGGRY----KSWKRRWFILNDKCLYYFEYTTDKSA 46
KEG L + G + WK + +L++ LY + TD
Sbjct: 2 KEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIP 43
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual
dimerization induced by V derived sequence, signaling
protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Length = 148
Score = 101 bits (254), Expect = 6e-28
Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 27/121 (22%)
Query: 96 FFNPDKEGWLWKQGGRY----KSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVRE 151
K G+L K+ + W++RW L+ YY+ DK+ +G ++ VR
Sbjct: 14 LPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRM 73
Query: 152 V----HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
D K CFE+ +Y+ +AA+ ++ +EW++ L
Sbjct: 74 NNTLRKDGKKDCCFEICAPD-------------------KRIYQFTAASPKDAEEWVQQL 114
Query: 208 S 208
Sbjct: 115 K 115
Score = 60.3 bits (146), Expect = 5e-12
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 4 FFNPDKEGWLWKQGGRY----KSWKRRWFILNDKCLYYFEYTTDKSAC 47
K G+L K+ + W++RW L+ YY+ DK
Sbjct: 14 LPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQK 61
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH
domains (ARAP) 2, PH domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 115
Score = 99.4 bits (248), Expect = 3e-27
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 24/112 (21%)
Query: 98 NPDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRH 156
K GWL K + + +++RW + + Y+ + +GIIPL I V
Sbjct: 7 GKVKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRV---Q 63
Query: 157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
+ FE+ T+ + EE+++WI L
Sbjct: 64 GDNKFEVVTT--------------------QRTFVFRVEKEEERNDWISILL 95
Score = 62.4 bits (152), Expect = 3e-13
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 6 NPDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDK 44
K GWL K + + +++RW + + Y+ +
Sbjct: 7 GKVKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEM 46
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain,
zizimin1, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 150
Score = 99.7 bits (248), Expect = 6e-27
Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 31/121 (25%)
Query: 100 DKEGWLWKQGGR------YKSWKRRWFIL------NDKCLYYFEYTTDKEPRGIIPLENI 147
K GWL+K +S+KRR+F L + +Y + KEP+G I L++
Sbjct: 19 TKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSC 78
Query: 148 QVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
+++ + FEL + Y ++A + E +EWI L
Sbjct: 79 MGVVQNNKVRRFAFELKMQD-------------------KSSYLLAADSEVEMEEWITIL 119
Query: 208 S 208
+
Sbjct: 120 N 120
Score = 53.8 bits (129), Expect = 1e-09
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 12/51 (23%)
Query: 8 DKEGWLWKQGGR------YKSWKRRWFIL------NDKCLYYFEYTTDKSA 46
K GWL+K +S+KRR+F L + +Y + K
Sbjct: 19 TKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEP 69
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Length = 134
Score = 98.6 bits (245), Expect = 8e-27
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 98 NPDKEGWLW--KQGGRYKSWKRRWFILNDKCLYYFEYTTD---KEPRGIIPLENIQVREV 152
+ ++ G+L + + +W RRW +L+ C+ Y+ Y D K P G I L N R++
Sbjct: 4 SVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSRQI 63
Query: 153 HDRHK-----PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
++ + FEL T + +T T +SA T EE+D W++ L
Sbjct: 64 EPANREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKL 123
Query: 208 S 208
+
Sbjct: 124 N 124
Score = 55.4 bits (133), Expect = 2e-10
Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 6 NPDKEGWLW--KQGGRYKSWKRRWFILNDKCLYYFEYTTDK 44
+ ++ G+L + + +W RRW +L+ C+ Y+ Y D+
Sbjct: 4 SVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDE 44
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH
domain, signaling protein; 2.60A {Mus musculus} SCOP:
b.55.1.1 PDB: 2otx_A
Length = 211
Score = 99.8 bits (248), Expect = 2e-26
Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 27/140 (19%)
Query: 77 TTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRY----KSWKRRWFILNDKCLYYFEY 132
D K G+L K+ + W++RW L+ YY+
Sbjct: 84 KDDDGPSDGNQFPPIAAQDLPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGS 143
Query: 133 TTDKEPRGIIPLENIQVREV----HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHT 188
DK+ +G ++ VR D K CFE+
Sbjct: 144 DKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPD-------------------KR 184
Query: 189 VYRMSAATAEEKDEWIKCLS 208
+Y+ +AA+ ++ +EW++ L
Sbjct: 185 IYQFTAASPKDAEEWVQQLK 204
Score = 59.8 bits (144), Expect = 3e-11
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 11/82 (13%)
Query: 6 NPDKEGWLWKQGGRY----KSWKRRWFILNDKCLYYFEYTTDKSAC---LIENSSGRYKS 58
K G+L K+ + W++RW L+ YY+ DK I+ R +
Sbjct: 105 FVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNN 164
Query: 59 WKRRWFILNDKCLYYFEYTTDK 80
R+ + K FE
Sbjct: 165 TLRK----DGKKDCCFEICAPD 182
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Length = 125
Score = 96.3 bits (239), Expect = 5e-26
Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 16/111 (14%)
Query: 101 KEGWLWKQGGRYK--SWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD--RH 156
++GWL K WF+L + L +++ +KE + ++ ++N+++R+V
Sbjct: 14 RKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMS 73
Query: 157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
H F LF +E + V + ++ T EE D W
Sbjct: 74 SKHIFALFN------------TEQRNVYKDYRQLELACETQEEVDSWKASF 112
Score = 47.7 bits (113), Expect = 2e-07
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 9 KEGWLWKQGGRYK--SWKRRWFILNDKCLYYFEYTTDKSAC 47
++GWL K WF+L + L +++ +K
Sbjct: 14 RKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKK 54
Score = 37.7 bits (87), Expect = 4e-04
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 48 LIENSSGRYKSWKRRWFILNDKCLYYFEYTTDK 80
I N K WF+L + L +++ +K
Sbjct: 19 TINNIGIMKGGSKEYWFVLTAENLSWYKDDEEK 51
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 93.6 bits (233), Expect = 5e-25
Identities = 27/115 (23%), Positives = 38/115 (33%), Gaps = 25/115 (21%)
Query: 98 NPDKEGWLWKQGGR--YKSWKRRWFIL--NDKCLYYFEYTTDKEPRGIIPLENIQVREVH 153
G+L K GG+ + WK RWF LYY D P I L + V +
Sbjct: 7 GKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDANPLDSIDLSSA-VFDCK 65
Query: 154 DRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
+ FE+ T V + AAT + W++ L
Sbjct: 66 ADAEEGIFEIKTPS--------------------RVITLKAATKQAMLYWLQQLQ 100
Score = 56.7 bits (137), Expect = 7e-11
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 6 NPDKEGWLWKQGGR--YKSWKRRWFIL--NDKCLYYFEYTTDK 44
G+L K GG+ + WK RWF LYY D
Sbjct: 7 GKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDA 49
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH
domain, phret1, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 130
Score = 90.8 bits (225), Expect = 8e-24
Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 13/110 (11%)
Query: 101 KEGWLWKQGGRYKSWKRRWFIL-NDKCLYYF--EYTTDKEPRGIIPLENIQVREVHDRHK 157
+ GWLW+Q + WKR WF L D L Y+ E D+E R +I ++ +
Sbjct: 10 RGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQD 69
Query: 158 PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
E + V + + + A T ++ W L
Sbjct: 70 VQPPEGRSRDGLL----------TVNLREGSRLHLCAETRDDAIAWKTAL 109
Score = 58.4 bits (141), Expect = 2e-11
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 9 KEGWLWKQGGRYKSWKRRWFIL-NDKCLYYFEYTTDKS 45
+ GWLW+Q + WKR WF L D L Y+ T +
Sbjct: 10 RGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQD 47
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 89.6 bits (222), Expect = 2e-23
Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 13/111 (11%)
Query: 101 KEGWLWKQGGRYKSWKRRWFIL-NDKCLYYFEYTTDKEPRGIIPL--ENIQVREVHDRHK 157
K GWL +Q K WK+ WF L +D L Y++ T + + + + I +R +
Sbjct: 7 KSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQECRD 66
Query: 158 PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
+ + ++V + A + ++ W L
Sbjct: 67 TQPPDGKSKDCML----------QIVCRDGKTISLCAESTDDCLAWKFTLQ 107
Score = 58.0 bits (140), Expect = 2e-11
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 9 KEGWLWKQGGRYKSWKRRWFIL-NDKCLYYFEYTTDKSA 46
K GWL +Q K WK+ WF L +D L Y++ T ++
Sbjct: 7 KSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQNI 45
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology
domain, PKB, AKT, phosphoinositide,
serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo
sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A*
2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Length = 125
Score = 89.6 bits (222), Expect = 2e-23
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 23/114 (20%)
Query: 101 KEGWLWKQGGRYKSWKRRWFIL-NDKCLYYFEYTTDKEPRGIIPLENIQVREV----HDR 155
KEGWL K+G K+W+ R+F+L ND ++ + PL N V + +R
Sbjct: 10 KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 69
Query: 156 HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRM-SAATAEEKDEWIKCLS 208
+P+ F + ++ + R T EE++EW +
Sbjct: 70 PRPNTFIIRC-----------------LQWTTVIERTFHVETPEEREEWTTAIQ 106
Score = 57.2 bits (138), Expect = 4e-11
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 9 KEGWLWKQGGRYKSWKRRWFIL-NDKCLYYFEYTTDKSACLIE 50
KEGWL K+G K+W+ R+F+L ND ++
Sbjct: 10 KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREA 52
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK
repeat, cytoplasm, GTP-binding, GTPase activation,
metal-binding, nucleotide-binding; NMR {Homo sapiens}
Length = 128
Score = 89.9 bits (222), Expect = 2e-23
Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 9/118 (7%)
Query: 98 NPDKEGWLWKQGGR--YKSWKRRWFIL-NDKCLYYFEYTTD---KEPRGIIPLENIQVRE 151
P K+ +L K+ G K WK+++ L ++ L Y D + L V+
Sbjct: 3 IPIKQSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVK- 61
Query: 152 VHDRHKPHCFELFTSGFE--FIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
V + P F +A + + E +V + AA+ EE+D W++ +
Sbjct: 62 VPGKRPPRAISAFGPSASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAI 119
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling
protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB:
3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Length = 120
Score = 88.1 bits (218), Expect = 8e-23
Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 7/112 (6%)
Query: 99 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEY---TTDKEPRGIIPLENIQVREVHDR 155
K G+L ++ KS+ + +++L L+ F+ D P + L V E +
Sbjct: 6 EIKSGFLERRSKFLKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECTVTEHSRK 65
Query: 156 HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
+ S +F+ K + ++ H + A + E W L
Sbjct: 66 NSTSSPNSTGSDAKFVLHAKQN---GIIRRGHN-WVFKADSYESMMSWFDNL 113
Score = 55.8 bits (134), Expect = 1e-10
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 7 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSACLIENS 52
K G+L ++ KS+ + +++L L+ F+ K + S
Sbjct: 6 EIKSGFLERRSKFLKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMS 51
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 85.7 bits (212), Expect = 6e-22
Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 24/113 (21%)
Query: 97 FNPDKEGWLWKQGGRY-KSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDR 155
+ +K+G+L K+ K W+RR + + L T++++P + L QV+ +
Sbjct: 8 YGSEKKGYLLKKSDGIRKVWQRRKCSVKNGILTISHATSNRQP-AKLNLLTCQVKPNAED 66
Query: 156 HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
F+L + + Y A ++ WI L+
Sbjct: 67 --KKSFDLIS--------------------HNRTYHFQAEDEQDYVAWISVLT 97
Score = 57.9 bits (140), Expect = 2e-11
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 5 FNPDKEGWLWKQGGRY-KSWKRRWFILNDKCLYYFEYTTDK 44
+ +K+G+L K+ K W+RR + + L T+++
Sbjct: 8 YGSEKKGYLLKKSDGIRKVWQRRKCSVKNGILTISHATSNR 48
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 107
Score = 84.5 bits (209), Expect = 1e-21
Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 22/111 (19%)
Query: 98 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD-KEPRGIIPLENIQVREVHDRH 156
+ +L WK RW + D L++++ K + + L +V
Sbjct: 7 GLETSSYLNVLVN--SQWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEVVPDPSPD 64
Query: 157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
+ F + G E + ++ A ++EE W+ L
Sbjct: 65 HLYSFRILHKGEE-------------------LAKLEAKSSEEMGHWLGLL 96
Score = 52.2 bits (125), Expect = 2e-09
Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 6 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA 46
+ +L WK RW + D L++++
Sbjct: 7 GLETSSYLNVLVN--SQWKSRWCSVRDNHLHFYQDRNRSKV 45
Score = 38.3 bits (89), Expect = 2e-04
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 57 KSWKRRWFILNDKCLYYFEYTTD 79
WK RW + D L++++
Sbjct: 20 SQWKSRWCSVRDNHLHFYQDRNR 42
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology,
lipid transport; NMR {Homo sapiens}
Length = 94
Score = 84.0 bits (208), Expect = 1e-21
Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 24/113 (21%)
Query: 100 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYF--EYTTDKEPRGIIPLENIQVREVHDRHK 157
++ G L K W+ RW +L + L Y+ E T+ RG I L +
Sbjct: 2 ERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDETEYGCRGSICLSKAVITP--HDFD 59
Query: 158 PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH 210
F++ + +V+ + A + + +WI + H
Sbjct: 60 ECRFDISVN--------------------DSVWYLRAQDPDHRQQWIDAIEQH 92
Score = 56.6 bits (137), Expect = 4e-11
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 8 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK 44
++ G L K W+ RW +L + L Y++ +
Sbjct: 2 ERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDET 38
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, transferase; NMR {Homo sapiens}
Length = 164
Score = 82.9 bits (204), Expect = 2e-20
Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 19/128 (14%)
Query: 87 DDGNDLMHTFFNPDKEGWLWKQGGR-----YKSWKRRWFILNDKCLYYFEY-TTDKEPRG 140
+ H FN E L K+ + ++K R F+L L Y+E K +G
Sbjct: 3 HHHHHHSHMNFNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKYRKG 62
Query: 141 IIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEK 200
I + I+ E+ + + C+ +VV +T+Y + A + + +
Sbjct: 63 FIDVSKIKCVEIVK------------NDDGVIPCQNKYPFQVVHDANTLY-IFAPSPQSR 109
Query: 201 DEWIKCLS 208
D W+K L
Sbjct: 110 DLWVKKLK 117
Score = 50.1 bits (119), Expect = 4e-08
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 2 HTFFNPDKEGWLWKQGGR-----YKSWKRRWFILNDKCLYYFEYTTDKSAC 47
H FN E L K+ + ++K R F+L L Y+E +K
Sbjct: 10 HMNFNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKYR 60
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 149
Score = 79.8 bits (196), Expect = 2e-19
Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 22/110 (20%)
Query: 100 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLEN-IQVREVHDRHKP 158
EG+L + Y+ ++ W L L+++ + + + + E + K
Sbjct: 19 YFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNSTEKN 78
Query: 159 -HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
F L ++ E +EW +
Sbjct: 79 CAKFTLVL--------------------PKEEVQLKTENTESGEEWRGFI 108
Score = 55.9 bits (134), Expect = 2e-10
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 8 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA 46
EG+L + Y+ ++ W L L+++
Sbjct: 19 YFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKSIIY 57
Score = 39.3 bits (91), Expect = 2e-04
Identities = 4/31 (12%), Positives = 11/31 (35%)
Query: 53 SGRYKSWKRRWFILNDKCLYYFEYTTDKPFK 83
Y+ ++ W L L+++ +
Sbjct: 28 RSGYREYEHYWTELRGTTLFFYTDKKSIIYV 58
>2d9x_A Oxysterol binding protein-related protein 11; PH domain,
OSBP-related protein 11, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 120
Score = 78.8 bits (194), Expect = 3e-19
Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 25/114 (21%)
Query: 98 NPDKEGWLWKQGGRYKSWKRRWFILNDKC--LYYF--EYTTDKEPRGIIPLENIQVREVH 153
+ G+L K W+ R+F+LN++ L YF E + +++PRG + L +
Sbjct: 7 GENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAVISPSD 66
Query: 154 DRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
+ H F + + Y++ A A+E+ W+ L
Sbjct: 67 E--DSHTFTVNAAS-------------------GEQYKLRATDAKERQHWVSRL 99
Score = 53.4 bits (128), Expect = 1e-09
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 6 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD 43
+ G+L K W+ R+F+LN++ + +
Sbjct: 7 GENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNE 44
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 129
Score = 78.9 bits (194), Expect = 4e-19
Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 12/114 (10%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENI-------QVREVH 153
KEGW+ R KR ++ L+ KCL F+ + + IPL I +
Sbjct: 10 KEGWMVHYTSRDNLRKRHYWRLDSKCLTLFQNESGSKYYKEIPLSEILRISSPRDFTNIS 69
Query: 154 DRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
PHCFE+ T + + V + + W K +
Sbjct: 70 QGSNPHCFEIITDTMVYFVGENNGD-----SSHNPVLAATGVGLDVAQSWEKAI 118
Score = 49.3 bits (117), Expect = 4e-08
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 9 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK 44
KEGW+ R KR ++ L+ KCL F+ +
Sbjct: 10 KEGWMVHYTSRDNLRKRHYWRLDSKCLTLFQNESGS 45
Score = 34.6 bits (79), Expect = 0.007
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 53 SGRYKSWKRRWFILNDKCLYYFE-YTTDKPFK-IP 85
+ R KR ++ L+ KCL F+ + K +K IP
Sbjct: 18 TSRDNLRKRHYWRLDSKCLTLFQNESGSKYYKEIP 52
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH
domain, lipid-binding, membrane, membrane protein; 1.90A
{Homo sapiens} PDB: 2kcj_A
Length = 103
Score = 76.0 bits (187), Expect = 2e-18
Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 23/111 (20%)
Query: 102 EGWLWKQGGRYKSWKRRWFILNDKCLYYF--EYTTDKEPRGIIPLENIQVREVHDRHKPH 159
EG L+K W+ RWF+L++ L Y+ + K +G I + +++
Sbjct: 2 EGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKGSKGSIKMAVCEIKV--HSADNT 59
Query: 160 CFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH 210
EL G + M A A E+ W+ L
Sbjct: 60 RMELIIPG-------------------EQHFYMKAVNAAERQRWLVALGSS 91
Score = 52.1 bits (125), Expect = 2e-09
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 10 EGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKS 45
EG L+K W+ RWF+L++ L Y++ D
Sbjct: 2 EGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDVC 37
Score = 35.9 bits (83), Expect = 0.001
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 53 SGRYKSWKRRWFILNDKCLYYFEYTTDKPFK 83
+ W+ RWF+L++ L Y++ D
Sbjct: 9 TNYLTGWQPRWFVLDNGILSYYDSQDDVCKG 39
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain,
PIP2 binding site, structural genomics; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 126
Score = 76.5 bits (188), Expect = 3e-18
Identities = 19/119 (15%), Positives = 36/119 (30%), Gaps = 29/119 (24%)
Query: 98 NPDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYF----EYTTDKEPRGIIPLENIQVREV 152
G+LW G +K WK+R+F+L Y F EP+ ++ L+ V
Sbjct: 7 GMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYT 66
Query: 153 ----HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
F G ++ +++ W++ +
Sbjct: 67 DPQPGLEGGRAFFNAVKEG--------------------DTVIFASDDEQDRILWVQAM 105
Score = 53.4 bits (128), Expect = 1e-09
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 6 NPDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKS 45
G+LW G +K WK+R+F+L Y F + +
Sbjct: 7 GMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYRE 47
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc
binding, X-linked agammaglobulinemia, tyrosine-protein
kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A*
2z0p_A* 1bwn_A*
Length = 169
Score = 76.5 bits (187), Expect = 8e-18
Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 18/125 (14%)
Query: 101 KEGWLWKQGG-----RYKSWKRRWFILNDKCLYYFEYTTDK----EPRGIIPLENIQVRE 151
E K+ ++K+ F+L L Y+EY ++ +G I +E I E
Sbjct: 5 LESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVE 64
Query: 152 VHDRHKPHCFELF--------TSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEW 203
K E + + + +VV + +Y + + T E + W
Sbjct: 65 TVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLY-VFSPTEELRKRW 123
Query: 204 IKCLS 208
I L
Sbjct: 124 IHQLK 128
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 78.2 bits (192), Expect = 3e-17
Identities = 45/250 (18%), Positives = 88/250 (35%), Gaps = 65/250 (26%)
Query: 1 MHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKC--LYYFEYTTD---KSACLIENSSGR 55
+ +EG+LWK+G + R F+L ++ L YF K+ IE+ +
Sbjct: 140 QEPYSAGYREGFLWKRGRDNGQFLSRKFVLTEREGALKYFNRNDAKEPKAVMKIEHLNAT 199
Query: 56 YKSWKRRWFILNDKCLYYFEYTTDKPFKIPEDDGNDLMHTF------------------- 96
++ K + + Y + + + I +DG +++ F
Sbjct: 200 FQPAKI--GHPHGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAARFHYLQVAFPGAS 257
Query: 97 ---------FNPDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLEN 146
N KEG++ K G + + +++RWF ++D+ L YF+ D RG + + +
Sbjct: 258 DADLVPKLSRNYLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGS 317
Query: 147 ---------IQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATA 197
H PH + T +F+ + T
Sbjct: 318 KESGYTVLHGFPPSTQGHHWPHGITIVTPDRKFL--------------------FACETE 357
Query: 198 EEKDEWIKCL 207
++ EW+
Sbjct: 358 SDQREWVAAF 367
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the
pleckstrin homology domain, structural genomics; NMR
{Mus musculus} SCOP: b.55.1.1
Length = 126
Score = 70.4 bits (172), Expect = 5e-16
Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 14/111 (12%)
Query: 101 KEGWLW-KQGGRYKSWKRRWFIL--NDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHK 157
G+L + + RR+FIL CL ++ G + ++Q+ +
Sbjct: 17 ICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSI 76
Query: 158 PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
+ + F F V+ Y + A ++ +W++ L+
Sbjct: 77 ATPKQKPKTPFCF-----------VINALSQRYFLQANDQKDLKDWVEALN 116
Score = 45.3 bits (107), Expect = 1e-06
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 9 KEGWLW-KQGGRYKSWKRRWFILNDKCLYYFEYTTDKS 45
G+L + + RR+FIL+ + Y +
Sbjct: 17 ICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQ 54
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein
binding, structural genomics, NPPSFA; 1.70A {Mus
musculus}
Length = 126
Score = 69.3 bits (169), Expect = 1e-15
Identities = 23/128 (17%), Positives = 36/128 (28%), Gaps = 34/128 (26%)
Query: 99 PDKEGWLWK-------QGGRYKSWKRRWFILNDKCLYYFEYTTDK---------EPRGII 142
P EG L + + SW R W +L+ L Y+ + + P +
Sbjct: 1 PTMEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKV 60
Query: 143 PLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDE 202
+ V+ D P F+L K VY+ +
Sbjct: 61 SIVGWMVQLPDDPEHPDIFQLNNP------------------DKGNVYKFQTGSRFHAIL 102
Query: 203 WIKCLSLH 210
W K L
Sbjct: 103 WHKHLDDA 110
Score = 41.9 bits (98), Expect = 2e-05
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 7 PDKEGWLWK-------QGGRYKSWKRRWFILNDKCLYYFEYTTDKSA 46
P EG L + + SW R W +L+ L Y+ + +
Sbjct: 1 PTMEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGT 47
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH,
RAS-associating, pleckstrin-homology, adapter
phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Length = 256
Score = 69.1 bits (168), Expect = 2e-14
Identities = 30/187 (16%), Positives = 62/187 (33%), Gaps = 16/187 (8%)
Query: 31 NDKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFILNDKCLYYFEYTTDKPFKIPEDDGN 90
++CL E + + S ++ ++ + ++ E +
Sbjct: 61 LERCLEDHELVVQVESTMASESKFLFRKNYAKYEFFKNPMNFFPEQMVTWS-QQSNGSQT 119
Query: 91 DLMHTFFN----PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPR---GIIP 143
L+ F N P+ +G+L + KSWK+ + L LY T PR +
Sbjct: 120 QLLQNFLNSSSSPEIQGFLHVKELGKKSWKKLYVCLRRSGLYCSTKGTSAAPRHLQLLAD 179
Query: 144 LENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEW 203
LE+ + + K + + + K + KV + + A + + W
Sbjct: 180 LEDSNIFSLIAGRKQYN-----APTDHGLCIKPN---KVRNETKELRLLCAEDEQTRTSW 231
Query: 204 IKCLSLH 210
+ L
Sbjct: 232 MTAFRLL 238
Score = 50.6 bits (120), Expect = 6e-08
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 6 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA 46
+P+ +G+L + KSWK+ + L LY T +
Sbjct: 131 SPEIQGFLHVKELGKKSWKKLYVCLRRSGLYCSTKGTSAAP 171
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal
transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2
b.55.1.2 PDB: 1irs_A*
Length = 264
Score = 68.7 bits (167), Expect = 2e-14
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDK-------CLYYFE-----YTTDKEPRGIIPLENI- 147
K G+L K KS +R+F+L L Y+E P+ IPLE+
Sbjct: 12 KVGYLRKP----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCF 67
Query: 148 QVREVHDRHKPHCFELFTSGFEFIKACKTDSE 179
+ + D H L+T F A +++E
Sbjct: 68 NINKRADSKNKHLVALYTRDEHFAIAADSEAE 99
Score = 40.6 bits (94), Expect = 1e-04
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 9 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEY 40
K G+L K KS +R+F+L
Sbjct: 12 KVGYLRKP----KSMHKRFFVLRAASEAGGPA 39
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21,
myristate, transport, nucleotide-binding, rhogap
protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dhj_A
Length = 168
Score = 64.0 bits (155), Expect = 3e-13
Identities = 27/128 (21%), Positives = 41/128 (32%), Gaps = 35/128 (27%)
Query: 98 NPDKEGWLW----------KQGGRYKSWKRRWFILNDKCLYYF----EYTTDKEPRGIIP 143
+ KEGWL + GG + WK+ + +L LY + E TT E I
Sbjct: 2 DAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPIS 61
Query: 144 LENIQVREVHDRHK-PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDE 202
+ + + K + F L TS E A ++
Sbjct: 62 VNACLIDISYSETKRKNVFRLTTSDCE--------------------CLFQAEDRDDMLA 101
Query: 203 WIKCLSLH 210
WIK +
Sbjct: 102 WIKTIQES 109
Score = 41.7 bits (97), Expect = 3e-05
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 10/43 (23%)
Query: 6 NPDKEGWLW----------KQGGRYKSWKRRWFILNDKCLYYF 38
+ KEGWL + GG + WK+ + +L LY +
Sbjct: 2 DAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLY 44
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 112
Score = 60.8 bits (147), Expect = 1e-12
Identities = 18/113 (15%), Positives = 36/113 (31%), Gaps = 27/113 (23%)
Query: 103 GWLWKQGGRYKSWKRRWFILNDK---CLYYFEYTTDKEPRGIIPLENIQVREVHDR---H 156
G L ++W W + L+ + D IPL + ++
Sbjct: 12 GPLRLSESG-ETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPEERLD 70
Query: 157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL 209
H ++L + +SA++AE + +W++ LS
Sbjct: 71 SGHVWKLQW--------------------AKQSWYLSASSAELQQQWLETLST 103
Score = 34.9 bits (80), Expect = 0.004
Identities = 6/39 (15%), Positives = 11/39 (28%), Gaps = 4/39 (10%)
Query: 11 GWLWKQGGRYKSWKRRWFILNDK---CLYYFEYTTDKSA 46
G L ++W W + L+ + D
Sbjct: 12 GPLRLSESG-ETWSEVWAAIPMSDPQVLHLQGGSQDGRL 49
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 125
Score = 61.2 bits (148), Expect = 2e-12
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENI-------QVREVH 153
+EGW+ + KR ++ L+ KC+ F+ T IPL I V
Sbjct: 10 REGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTNRYYKEIPLSEILTVESAQNFSLVP 69
Query: 154 DRHKPHCFELFTSGFEF 170
PHCFE+ T+ +
Sbjct: 70 PGTNPHCFEIVTANATY 86
Score = 39.2 bits (91), Expect = 1e-04
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 9 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK 44
+EGW+ + KR ++ L+ KC+ F+ T
Sbjct: 10 REGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTN 45
Score = 30.7 bits (69), Expect = 0.15
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 57 KSWKRRWFILNDKCLYYF-EYTTDKPFK-IP 85
KR ++ L+ KC+ F TT++ +K IP
Sbjct: 22 TLRKRHYWRLDCKCITLFQNNTTNRYYKEIP 52
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 137
Score = 61.2 bits (148), Expect = 2e-12
Identities = 14/118 (11%), Positives = 38/118 (32%), Gaps = 22/118 (18%)
Query: 99 PDKEGWLW---KQGGRYKSWKRRWFILNDKCLYYFEYTTD--KEPRGIIPLENIQVR-EV 152
P+ + L + K +++ W + + L Y++ + +P + L+ +V +V
Sbjct: 9 PELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKGCEVVPDV 68
Query: 153 HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH 210
+ + C +L + + ++ W+ L
Sbjct: 69 NVSGQKFCIKLLV----------------PSPEGMSEIYLRCQDEQQYARWMAGCRLA 110
Score = 41.9 bits (98), Expect = 2e-05
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 7 PDKEGWLW---KQGGRYKSWKRRWFILNDKCLYYF 38
P+ + L + K +++ W + + L Y+
Sbjct: 9 PELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYY 43
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain,
BAR-PH domain, protein transpo; 2.05A {Homo sapiens}
PDB: 2z0o_A 2elb_A
Length = 385
Score = 61.9 bits (149), Expect = 1e-11
Identities = 20/179 (11%), Positives = 47/179 (26%), Gaps = 27/179 (15%)
Query: 32 DKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFILNDKCLYYFEYTTDKPFKIPEDDGND 91
+ E ++N S + + + N
Sbjct: 216 ENLNEQLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLEVASDPLYVPDPDPTKFPVNR 275
Query: 92 LMHTFFNPDKEGWLWKQ---GGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQ 148
+ G+L + G +W R+++ L D + ++N
Sbjct: 276 NLTRKA-----GYLNARNKTGLVSSTWDRQFYFTQGGNLMSQ-ARGDVAGGLAMDIDNCS 329
Query: 149 VREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
V V + +CF++ + + A + ++ +EWI +
Sbjct: 330 VMAVDCEDRRYCFQITSF------------------DGKKSSILQAESKKDHEEWICTI 370
Score = 33.1 bits (74), Expect = 0.053
Identities = 7/52 (13%), Positives = 14/52 (26%), Gaps = 3/52 (5%)
Query: 1 MHTFFNPDKEGWLWKQ---GGRYKSWKRRWFILNDKCLYYFEYTTDKSACLI 49
K G+L + G +W R+++ L +
Sbjct: 272 PVNRNLTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARGDVAGGLAM 323
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1;
guanine nucleotide exchange factor, guanine-nucleotide
releasing factor, lipoprotein; 4.50A {Mus musculus}
Length = 279
Score = 58.8 bits (141), Expect = 8e-11
Identities = 20/129 (15%), Positives = 34/129 (26%), Gaps = 38/129 (29%)
Query: 101 KEGWLWKQGG------------RYKSWKRRWFILNDKCLYYFEYTTDKEP------RGII 142
K G L + + WK W L L+++E + +
Sbjct: 13 KAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAV 72
Query: 143 PLENIQVREVHDRH-KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKD 201
+EN V+ V + K F L S + + E +
Sbjct: 73 WVENSIVQAVPEHPKKDFVFCLSNSL-------------------GDAFLFQTTSQTELE 113
Query: 202 EWIKCLSLH 210
WI +
Sbjct: 114 NWITAIHSA 122
Score = 39.9 bits (92), Expect = 3e-04
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 12/43 (27%)
Query: 9 KEGWLWKQGG------------RYKSWKRRWFILNDKCLYYFE 39
K G L + + WK W L L+++E
Sbjct: 13 KAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYE 55
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 117
Score = 56.2 bits (135), Expect = 1e-10
Identities = 17/111 (15%), Positives = 42/111 (37%), Gaps = 5/111 (4%)
Query: 101 KEGWLW---KQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHK 157
EGWL + + W +++ I++ K + +++ DKE P + + ++
Sbjct: 3 LEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKEQ--SNPYMVLDIDKLFHVRP 60
Query: 158 PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
+++ + + I + A + EE+ +W+ L
Sbjct: 61 VTQTDVYRADAKEIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLV 111
Score = 41.2 bits (96), Expect = 3e-05
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 9 KEGWLW---KQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA 46
EGWL + + W +++ I++ K + +++ DK
Sbjct: 3 LEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKEQ 43
Score = 32.7 bits (74), Expect = 0.026
Identities = 8/50 (16%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 55 RYKSWKRRWFILNDKCLYYFEYTTDK----PFKIPEDDGNDLMHTFFNPD 100
+ W +++ I++ K + +++ DK P+ + + D + D
Sbjct: 16 KKFGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRPVTQTD 65
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 55.7 bits (134), Expect = 2e-10
Identities = 18/127 (14%), Positives = 31/127 (24%), Gaps = 37/127 (29%)
Query: 100 DKEGWLWK----QGGRY--KSWKRRWFILNDKCLYYF-----------EYTTDKEPRGII 142
+K G L QGGR K+W W +L L ++ P +
Sbjct: 13 EKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSV 72
Query: 143 PLENIQVREVHDRHK-PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKD 201
L + + + T + + + E
Sbjct: 73 DLRGAALAHGRHLSSRRNVLHIRTI-------------------PGHEFLLQSDHETELR 113
Query: 202 EWIKCLS 208
W + L
Sbjct: 114 AWHRALR 120
Score = 39.5 bits (92), Expect = 1e-04
Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 12/107 (11%)
Query: 8 DKEGWLWK----QGGRY--KSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKR 61
+K G L QGGR K+W W +L L ++ + + G S
Sbjct: 13 EKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYR---EPPPTAPSSGWGPAGSRPE 69
Query: 62 RWFILNDKCLYYFEYTTDKP--FKIPEDDGND-LMHTFFNPDKEGWL 105
L L + + + + I G++ L+ + + W
Sbjct: 70 SSVDLRGAALAHGRHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWH 116
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin
homology domain, structural genomics; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 132
Score = 54.2 bits (130), Expect = 6e-10
Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 24/125 (19%)
Query: 88 DGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEP---RGIIPL 144
+G+D+ T N + Q G + + R+F+L L + +G IP+
Sbjct: 18 EGDDI-KTLGNVIFMSQVVMQHGACEEKEERYFLLFSSVLIMLSASPRMSGFMYQGKIPI 76
Query: 145 ENIQVREVHD-RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEW 203
+ V + + FE+ S E + ++ EW
Sbjct: 77 AGMVVNRLDEIEGSDCMFEITGSTVE-------------------RIVVHCNNNQDFQEW 117
Query: 204 IKCLS 208
++ L+
Sbjct: 118 MEQLN 122
Score = 26.8 bits (59), Expect = 3.4
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 10 EGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKS 45
+ Q G + + R+F+L L + S
Sbjct: 31 MSQVVMQHGACEEKEERYFLLFSSVLIMLSASPRMS 66
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine
nucleotide exchange factor, alternative splicing, cell
projection, coiled coil; 2.10A {Mus musculus} PDB:
3a8q_A
Length = 263
Score = 56.1 bits (134), Expect = 9e-10
Identities = 23/130 (17%), Positives = 39/130 (30%), Gaps = 38/130 (29%)
Query: 100 DKEGWLWK------------QGGRYKSWKRRWFILNDKCLYYFEYTTDKEP------RGI 141
K GWL+ + + WK+ W L L ++E R
Sbjct: 12 RKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCA 71
Query: 142 IPLENIQVREVHDR-HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEK 200
+ E+ V+ V + K H F L S + VY A + +
Sbjct: 72 LFAEDSIVQSVPEHPKKEHVFCLSNSCGD-------------------VYLFQATSQTDL 112
Query: 201 DEWIKCLSLH 210
+ W+ +
Sbjct: 113 ENWVTAIHSA 122
Score = 38.8 bits (89), Expect = 6e-04
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 12/44 (27%)
Query: 8 DKEGWLWK------------QGGRYKSWKRRWFILNDKCLYYFE 39
K GWL+ + + WK+ W L L ++E
Sbjct: 12 RKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYE 55
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural
genomics, spectrin beta chain, brain 2, KIAA0302; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 123
Score = 53.0 bits (127), Expect = 1e-09
Identities = 19/123 (15%), Positives = 33/123 (26%), Gaps = 34/123 (27%)
Query: 101 KEGWLWK-----QGGRY---KSWKRRWFILNDKCLYYF------EYTTDKEPRGIIPLEN 146
EG L + G+ +SW+ + +L L ++ + L
Sbjct: 10 MEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLAR 69
Query: 147 IQVREVHDRHK-PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIK 205
Q D K H F+L Y A E W++
Sbjct: 70 AQGSVAFDYRKRKHVFKLGLQDG-------------------KEYLFQAKDEAEMSSWLR 110
Query: 206 CLS 208
++
Sbjct: 111 VVN 113
Score = 34.9 bits (80), Expect = 0.004
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 8/38 (21%)
Query: 9 KEGWLWK-----QGGRY---KSWKRRWFILNDKCLYYF 38
EG L + G+ +SW+ + +L L ++
Sbjct: 10 MEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFY 47
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator,
pleckstrin homology domain, STR genomics consortium,
SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Length = 124
Score = 52.2 bits (125), Expect = 4e-09
Identities = 17/129 (13%), Positives = 33/129 (25%), Gaps = 40/129 (31%)
Query: 101 KEGWLWK----QGGRY---KSWKRRWFILNDKCLYYF------------EYTTDKEPRGI 141
K G L + G+ K W W +L L +F + + P
Sbjct: 10 KAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYT 69
Query: 142 IPLENIQVREV--HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEE 199
+ L + + + EL + + Y + +
Sbjct: 70 VELRGATLSWAPKDKSSRKNVLELRSR-------------------DGSEYLIQHDSEAI 110
Query: 200 KDEWIKCLS 208
W K ++
Sbjct: 111 ISTWHKAIA 119
Score = 35.6 bits (82), Expect = 0.002
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 9/57 (15%)
Query: 9 KEGWLWK----QGGRY---KSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKS 58
K G L + G+ K W W +L L + + K++ S
Sbjct: 10 KAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTF--FKDSKTSAAGGLRQPSKFS 64
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 127
Score = 50.9 bits (121), Expect = 1e-08
Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 30/124 (24%)
Query: 98 NPDKEGWLWKQGGRY--KSWKRRWFILNDKCLYYF----------EYTTDKEPRGIIPLE 145
K+G+L+ Q + K W+R L + + R +I L
Sbjct: 11 GAVKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLS 70
Query: 146 N-IQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWI 204
+ ++V E D+ +E K +Y + AA A E+ +W+
Sbjct: 71 DCLRVAEAGGEASS----------------PRDTSAFFLETKERLY-LLAAPAAERGDWV 113
Query: 205 KCLS 208
+ +
Sbjct: 114 QAIC 117
Score = 35.9 bits (82), Expect = 0.002
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 6 NPDKEGWLWKQGGRY--KSWKRRWFILNDKCLYYFE 39
K+G+L+ Q + K W+R L
Sbjct: 11 GAVKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALA 46
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin
activation, cytoplas membrane, cell adhesion; HET: SRT;
1.90A {Homo sapiens} PDB: 2lko_A*
Length = 173
Score = 51.3 bits (122), Expect = 2e-08
Identities = 16/131 (12%), Positives = 40/131 (30%), Gaps = 25/131 (19%)
Query: 85 PEDDGNDLMHTFFNPDKEGWLWKQGGR---YKSWKRRWFILNDKCLYYFEYTTD--KEPR 139
D+ P+ ++ + K +K+ W D + ++ + P
Sbjct: 36 TSTILGDITSI---PELADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKEESSGTPA 92
Query: 140 GIIPLENIQVR-EVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAE 198
+ L +V +V+ + +L V EG + ++ + +
Sbjct: 93 HQMNLRGCEVTPDVNISGQKFNIKLLIP---------------VAEGMNEIW-LRCDNEK 136
Query: 199 EKDEWIKCLSL 209
+ W+ L
Sbjct: 137 QYAHWMAACRL 147
Score = 38.6 bits (89), Expect = 4e-04
Identities = 5/35 (14%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 7 PDKEGWLWKQGGR---YKSWKRRWFILNDKCLYYF 38
P+ ++ + K +K+ W D + +
Sbjct: 47 PELADYIKVFKPKKLTLKGYKQYWCTFKDTSISCY 81
Score = 34.3 bits (78), Expect = 0.011
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 56 YKSWKRRWFILNDKCLYYF 74
K +K+ W D + +
Sbjct: 63 LKGYKQYWCTFKDTSISCY 81
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 50.6 bits (121), Expect = 8e-08
Identities = 19/124 (15%), Positives = 41/124 (33%), Gaps = 15/124 (12%)
Query: 88 DGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEP----RGIIP 143
+G+D++ G + Y ++R F L D + + + +G I
Sbjct: 246 EGDDILDRSSELIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRID 305
Query: 144 LENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEW 203
++ +V ++ D + F+ + V+ A EEK W
Sbjct: 306 MDKYEVIDIEDGRDDDFNVSMKNAFKLHN-----------KETEEVHLFFAKKLEEKIRW 354
Query: 204 IKCL 207
++
Sbjct: 355 LRAF 358
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 50.0 bits (119), Expect = 1e-07
Identities = 16/111 (14%), Positives = 34/111 (30%), Gaps = 15/111 (13%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEP----RGIIPLENIQVREVHDRH 156
G L + ++R F L D L Y + + +G + ++ ++V ++ D
Sbjct: 336 YSGELTRVTQPQAKSQQRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGK 395
Query: 157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
+ F + + E+K W+K
Sbjct: 396 DRDLHVSIKNAFRLH-----------RGATGDSHLLCTRKPEQKQRWLKAF 435
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP:
b.55.1.1
Length = 122
Score = 47.6 bits (113), Expect = 1e-07
Identities = 10/127 (7%), Positives = 33/127 (25%), Gaps = 36/127 (28%)
Query: 101 KEGWLWK-----QGGR---YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREV 152
EG++ + + +SW + + + +++ + + ++
Sbjct: 10 HEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDL 69
Query: 153 HD---------RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEW 203
+ K H + + ++ + A E +W
Sbjct: 70 QNAAIEIASDYTKKKHVLRVKLAN-------------------GALFLLQAHDDTEMSQW 110
Query: 204 IKCLSLH 210
+ L
Sbjct: 111 VTSLKAQ 117
Score = 32.2 bits (73), Expect = 0.038
Identities = 4/39 (10%), Positives = 15/39 (38%), Gaps = 8/39 (20%)
Query: 9 KEGWLWK-----QGGR---YKSWKRRWFILNDKCLYYFE 39
EG++ + + +SW + + + +++
Sbjct: 10 HEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYK 48
Score = 27.6 bits (61), Expect = 1.7
Identities = 2/19 (10%), Positives = 9/19 (47%)
Query: 57 KSWKRRWFILNDKCLYYFE 75
+SW + + + +++
Sbjct: 30 RSWDKVYMAAKAGRISFYK 48
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition,
allosteric inhibitor, kinase inhibitor hydrophobic
collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB:
3o96_A*
Length = 446
Score = 47.8 bits (114), Expect = 8e-07
Identities = 38/185 (20%), Positives = 59/185 (31%), Gaps = 25/185 (13%)
Query: 9 KEGWLWKQGGRYKSWKRRWFILND--KCLYYFEYTTDKSACLIENSSGRYKSWKRRWFIL 66
KEGWL K+G K+W+ R+F+L + + Y E D ++ F +
Sbjct: 8 KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNN----------FSV 57
Query: 67 NDKCLYYFEYTTDKPFKIP-EDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDK 125
L E F I + TF E + W + D
Sbjct: 58 AQCQLMKTERPRPNTFIIRCLQWTTVIERTFHVETPE--------EREEWTTAIQTVADG 109
Query: 126 CLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKV--V 183
D P +N E+ + + FE++K + GKV V
Sbjct: 110 LKKQAAAEMDFRSGS--PSDNSGAEEMEVSLAKPKHRVTMNEFEYLKLLGKGTFGKVILV 167
Query: 184 EGKHT 188
+ K T
Sbjct: 168 KEKAT 172
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2;
hydrolase, phospholipase C, phosphoinositides, RHO
gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens}
PDB: 2w2w_A* 2w2x_C* 2k2j_A
Length = 124
Score = 45.2 bits (106), Expect = 1e-06
Identities = 18/120 (15%), Positives = 32/120 (26%), Gaps = 28/120 (23%)
Query: 99 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEP---------RGIIPLENIQV 149
++G L+ + W R + + D L + + RGI+ L V
Sbjct: 12 HKQQGELYMWDSIDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNV 71
Query: 150 REVHD--RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
+ K F L + + EE EW + +
Sbjct: 72 VKAPQGKNQKSFVFILEPK-----------------QQGDPPVEFATDKVEELFEWFQSI 114
Score = 33.2 bits (75), Expect = 0.017
Identities = 6/40 (15%), Positives = 14/40 (35%)
Query: 7 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA 46
++G L+ + W R + + D L + +
Sbjct: 12 HKQQGELYMWDSIDQKWTRHFCAIADAKLSFSDDIEQTME 51
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus
musculus} SCOP: b.55.1.1 PDB: 1mph_A
Length = 106
Score = 44.6 bits (105), Expect = 1e-06
Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 34/122 (27%)
Query: 102 EGWLWK-----QGGRY---KSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQ----- 148
EG+L + + +SW + ++N++ + +++ E
Sbjct: 2 EGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEA 61
Query: 149 --VREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKC 206
+ + K H F+L S Y A EE + WI+
Sbjct: 62 ICEVALDYKKKKHVFKLRLSDG-------------------NEYLFQAKDDEEMNTWIQA 102
Query: 207 LS 208
+S
Sbjct: 103 IS 104
Score = 30.3 bits (68), Expect = 0.16
Identities = 6/44 (13%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 10 EGWLWK-----QGGRY---KSWKRRWFILNDKCLYYFEYTTDKS 45
EG+L + + +SW + ++N++ + +++ +
Sbjct: 2 EGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAA 45
Score = 26.8 bits (59), Expect = 2.8
Identities = 3/19 (15%), Positives = 13/19 (68%)
Query: 57 KSWKRRWFILNDKCLYYFE 75
+SW + ++N++ + +++
Sbjct: 21 RSWHNVYCVINNQEMGFYK 39
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO,
GTPase, guanine-nucleotide releas factor,
phosphorylation, signaling protein; 1.70A {Homo sapiens}
SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Length = 311
Score = 43.2 bits (102), Expect = 2e-05
Identities = 19/126 (15%), Positives = 36/126 (28%), Gaps = 28/126 (22%)
Query: 89 GNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEP------RGII 142
G ++ F +W + + R L + L + + D + +
Sbjct: 201 GELILQESFQ------VWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKL 254
Query: 143 PLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDE 202
+ V E H P F L+ + A++ E K +
Sbjct: 255 FTSELGVTE-HVEGDPCKFALWVGR---------------TPTSDNKIVLKASSIENKQD 298
Query: 203 WIKCLS 208
WIK +
Sbjct: 299 WIKHIR 304
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo
sapiens}
Length = 185
Score = 41.2 bits (96), Expect = 6e-05
Identities = 20/111 (18%), Positives = 44/111 (39%), Gaps = 24/111 (21%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILND------KCLYYFEYTTDKEPRGIIPLENIQVREVHD 154
++G ++ + + + + +L D + + + + + +I L+ + VREV
Sbjct: 73 RDGSVFLKNAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAH 132
Query: 155 RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIK 205
K G I TD E + + A++ EE++ WI+
Sbjct: 133 EEK---------GLFLISMGMTDPE---------MVEVHASSKEERNSWIQ 165
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 40.8 bits (95), Expect = 2e-04
Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 20/112 (17%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEP----RGIIPLENIQVREVHDRH 156
+G L +S R+ L DK L + + + L + QVR+
Sbjct: 408 IDGELKITSVERRSKMDRYAFLLDKAL---LICKRRGDSYDLKDFVNLHSFQVRDDSSGD 464
Query: 157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
+ + ++ F I+ + Y + T E K +W++
Sbjct: 465 R--DNKKWSHMFLLIE-----------DQGAQGYELFFKTRELKKKWMEQFE 503
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 40.4 bits (94), Expect = 2e-04
Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 13/114 (11%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILND------KCLYYFEYTTDKEPRGIIPLENIQVREVHD 154
EG L + + K+ + +L+D + + P +R V
Sbjct: 414 HEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLR 473
Query: 155 RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
E+ T F D E ++ E + A T E+ W ++
Sbjct: 474 LTSAMTREVATDHKAFYVLFTWDQEAQIYE-------LVAQTVSERKNWCALIT 520
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 40.2 bits (94), Expect = 2e-04
Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 30/117 (25%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEP----RGIIPLENIQVREVHDRH 156
+G L +S R+ L DK L + + + L + QVR+
Sbjct: 236 IDGELKITSVERRSKTDRYAFLLDKAL---LICKRRGDSYDLKASVNLHSFQVRDDSSGE 292
Query: 157 K-----PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
+ H F L + + Y + T E K +W++
Sbjct: 293 RDNKKWSHMFLL------------------IEDQGAQGYELFFKTRELKKKWMEQFE 331
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange
factor (GEF), small G-protein, signaling protein; 2.40A
{Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A
1kzg_A 1rj2_A
Length = 353
Score = 39.9 bits (93), Expect = 3e-04
Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 32/136 (23%)
Query: 86 EDDGNDLMHTFFN---PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEP---- 138
D G LM F+ K+G + +R L++K + + + +
Sbjct: 205 GDLGKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEK 264
Query: 139 ------RGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRM 192
+ + + + + E + + FE++ + VY +
Sbjct: 265 APSYSYKQSLNMTAVGITE-NVKGDTKKFEIW------------------YNAREEVYII 305
Query: 193 SAATAEEKDEWIKCLS 208
A T E K W+ +
Sbjct: 306 QAPTPEIKAAWVNAIR 321
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase,
PKB, pleckstrin homology domain, inositol phosphate,
signal transduction; HET: 4PT; 1.45A {Homo sapiens}
SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Length = 151
Score = 38.7 bits (89), Expect = 4e-04
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 8/92 (8%)
Query: 79 DKPFKIPEDDGNDLMHTFFNPD---KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD 135
+K + + G + H F + K G + K+ G +RR +L + Y+ +
Sbjct: 29 EKRLLLEKQAGGNPWHQFVENNLILKMGPVDKRKGL--FARRRQLLLTEGPHLYYVDPVN 86
Query: 136 KEPRGIIPLENIQVREVHDRHKPHCFELFTSG 167
K +G IP E + F + T
Sbjct: 87 KVLKGEIPWSQELRPEAKN---FKTFFVHTPN 115
Score = 28.3 bits (62), Expect = 1.2
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 9 KEGWLWKQGGRYKSWKRRWFILNDKC-LYYFEYTTDKSACLIENSSGRYKSWK--RRWFI 65
K G + K+ G +RR +L + LYY + I S K + +F+
Sbjct: 54 KMGPVDKRKGL--FARRRQLLLTEGPHLYYVDPVNKVLKGEIPWSQELRPEAKNFKTFFV 111
Query: 66 LNDKCLYYFE 75
YY
Sbjct: 112 HTPNRTYYLM 121
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small
molecular weight G-protein, complex, protein-protein
complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Length = 354
Score = 39.5 bits (92), Expect = 4e-04
Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 25/102 (24%)
Query: 116 KRRWFILNDKCLYYFEYTTDKEP---------RGIIPLENIQVREVHDRHKPHCFELFTS 166
+ R L ++ + + E + I + + + P F L +
Sbjct: 229 RERRVFLFEQIIIFSEALGGGVRGGTQPGYVYKNSIKVSCLGLEGNLQG-DPCRFALTSR 287
Query: 167 GFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
G E G Y + AA WIK ++
Sbjct: 288 GPE---------------GGIQRYVLQAADPAISQAWIKHVA 314
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY
crystallography, regulation of RHOA GTPase, protein
complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 3kz1_A*
Length = 368
Score = 38.3 bits (89), Expect = 9e-04
Identities = 22/151 (14%), Positives = 43/151 (28%), Gaps = 41/151 (27%)
Query: 82 FKIPEDDGNDLMHTFFNPD-------KEGWLWKQGGRYKSWKRRWFILNDKCLY------ 128
E N L F + D EG L + + K+ +L D +
Sbjct: 229 ATALERASNPLAAEFKSLDLTTRKMIHEGPLTWRISKDKTLDLHVLLLEDLLVLLQKQDE 288
Query: 129 -----------YFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTD 177
+ + ++ L + +R V F + +
Sbjct: 289 KLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVAT--DKRAFFIICTS---------- 336
Query: 178 SEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
G +Y + A T+ +K+ W++ L
Sbjct: 337 -----KLGPPQIYELVALTSSDKNTWMELLE 362
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 38.1 bits (88), Expect = 0.001
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 22/109 (20%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK-EPRGIIPLENIQVREVHDRHKPH 159
KEG L K G+ R F++ND LY + K + + + N++V P+
Sbjct: 246 KEGTLMKVTGK-NRRPRHLFLMNDVLLYTYPQKDGKYRLKNTLAVANMKVSRPVMEKVPY 304
Query: 160 CFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
++ E + +SA++ E+DEW CLS
Sbjct: 305 ALKI--------------------ETSESCLMLSASSCAERDEWYGCLS 333
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene
regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 1pms_A 1awe_A
Length = 354
Score = 38.0 bits (88), Expect = 0.001
Identities = 23/137 (16%), Positives = 39/137 (28%), Gaps = 35/137 (25%)
Query: 83 KIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEP---- 138
I +G D+ EG L + G + R L D + + +
Sbjct: 231 NIDGWEGKDIGQCCNEFIMEGTLTRVGAK----HERHIFLFDGLMICCKSNHGQPRLPGA 286
Query: 139 -------RGIIPLENIQVREVHD-RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVY 190
+ + +Q+ + D H FE+
Sbjct: 287 SNAEYRLKEKFFMRKVQINDKDDTNEYKHAFEIILKD-------------------ENSV 327
Query: 191 RMSAATAEEKDEWIKCL 207
SA +AEEK+ W+ L
Sbjct: 328 IFSAKSAEEKNNWMAAL 344
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 38.0 bits (88), Expect = 0.002
Identities = 22/151 (14%), Positives = 43/151 (28%), Gaps = 41/151 (27%)
Query: 82 FKIPEDDGNDLMHTFFNPD-------KEGWLWKQGGRYKSWKRRWFILNDKCLY------ 128
E N L F + D EG L + + K+ +L D +
Sbjct: 271 ATALERASNPLAAEFKSLDLTTRKMIHEGPLTWRISKDKTLDLHVLLLEDLLVLLQKQDE 330
Query: 129 -----------YFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTD 177
+ + ++ L + +R V F + +
Sbjct: 331 KLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSV--ATDKRAFFIICTSKL-------- 380
Query: 178 SEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
G +Y + A T+ +K+ W++ L
Sbjct: 381 -------GPPQIYELVALTSSDKNTWMELLE 404
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase,
GTP-binding protein,, signaling protein; HET: GNP; 2.00A
{Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Length = 113
Score = 35.6 bits (82), Expect = 0.003
Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 26/114 (22%)
Query: 101 KEGWLWK-QGGRYKSWKRRWFILNDKCLYYFEYTTDKEPR----GIIPLENIQVREVHD- 154
G L + + +R L + CL + + + PL+ + V V D
Sbjct: 10 YNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVKDN 69
Query: 155 RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
F+L I A A+ K EW++ L
Sbjct: 70 PPMKDMFKLLMFPESRI--------------------FQAENAKIKREWLEVLE 103
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology
domain, pleckstrin homology domain, GTPase, guanine
nucleotide exchange factor; 2.80A {Mus musculus} SCOP:
a.87.1.1 b.55.1.1
Length = 377
Score = 36.9 bits (85), Expect = 0.003
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 139 RGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAE 198
R +IP E +QVR + + + I K++SEG+ V+ + ++ E
Sbjct: 303 RHMIPTEALQVRALPSA------DAEANAVCEIVHVKSESEGR----PERVFHLCCSSPE 352
Query: 199 EKDEWIKCL 207
+ +++K +
Sbjct: 353 SRKDFLKSV 361
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 36.3 bits (84), Expect = 0.004
Identities = 12/105 (11%), Positives = 31/105 (29%), Gaps = 12/105 (11%)
Query: 113 KSWKRRWFILNDKCL---------YYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFEL 163
+ L + L Y ++P IP++++ + ++ D L
Sbjct: 241 NRGVKLHVFLFQEVLVITRAVTHNEQLCYQLYRQP---IPVKDLTLEDLQDGEVRLGGSL 297
Query: 164 FTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
+ + + + + A K +W+ C+
Sbjct: 298 RGAFSNNERVKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIR 342
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH),
beta sandwich (PH), signaling protein; 2.13A {Homo
sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Length = 385
Score = 35.6 bits (82), Expect = 0.008
Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 7/111 (6%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHC 160
EG L + R K+ +L D ++ R ++ + + D
Sbjct: 259 HEGPLVWKVNRDKTIDLYTLLLED----ILVLLQKQDDRLVLRCHSKILASTADSKHTFS 314
Query: 161 FELFTSGFEFIKACKTDSEGKVV---EGKHTVYRMSAATAEEKDEWIKCLS 208
+ S + + V+ + +Y + A T EK W +
Sbjct: 315 PVIKLSTVLVRQVATDNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLIC 365
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 35.6 bits (82), Expect = 0.008
Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 13/114 (11%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILND------KCLYYFEYTTDKEPRGIIPLENIQVREVHD 154
EG L + + K+ + +L+D + + P +R V
Sbjct: 261 HEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLR 320
Query: 155 RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
E+ T F D E ++ E + A T E+ W ++
Sbjct: 321 LTSAMTREVATDHKAFYVLFTWDQEAQIYE-------LVAQTVSERKNWCALIT 367
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 34.6 bits (79), Expect = 0.020
Identities = 18/126 (14%), Positives = 33/126 (26%), Gaps = 42/126 (33%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCL----------------YYFEYTTDKEP---RGI 141
G L+K KS K L + L F ++ + +
Sbjct: 255 HSGKLYKT----KSNKELHGFLFNDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTP 310
Query: 142 IPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKD 201
I L + V+ D +F + VY + E+
Sbjct: 311 IFLNEVLVKLPTD--PSSDEPVFH-----------------ISHIDRVYTLRTDNINERT 351
Query: 202 EWIKCL 207
W++ +
Sbjct: 352 AWVQKI 357
>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA
packaging podoviridae, virus assembly, tail tube, trunk
domain; 7.50A {Enterobacteria phage P22}
Length = 725
Score = 29.7 bits (65), Expect = 0.72
Identities = 16/168 (9%), Positives = 32/168 (19%), Gaps = 28/168 (16%)
Query: 7 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFIL 66
DK N + +Y D S W W
Sbjct: 165 MDKSDARH-------CTVIHSMSQNGWEDFAEKYDLDADD---IPSFQNPNDWVFPWL-- 212
Query: 67 NDKCLYYFEYTTDKP-------------FKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYK 113
+ E+ + D+ + G++ + K
Sbjct: 213 TQDTIQIAEFYEVVEKKETAFIYQDPVTGEPVSYFKRDIKDVIDDLADSGFIKIAERQIK 272
Query: 114 SWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCF 161
+ I+ + + IP+ + K
Sbjct: 273 RRRVYKSIITCTAVLKDK---QLIAGEHIPIVPVFGEWGFVEDKEVYE 317
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP;
transcription, beta-propeller; HET: PGE PG4 MES 2PE;
2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Length = 795
Score = 29.6 bits (67), Expect = 0.87
Identities = 12/117 (10%), Positives = 22/117 (18%), Gaps = 34/117 (29%)
Query: 3 TFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK-------------SACLI 49
L I + L F+ K A +
Sbjct: 134 NGIEEISPEQLL--------------ISTPEGLIMFDIKESKFIDDSFSTAMHKTIASTL 179
Query: 50 ENSSGRYKSWKRRWFILNDKCLYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLW 106
+ + + LY + T K+ G + +W
Sbjct: 180 YRQGDQI------YIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAIL-QQSPTRIW 229
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 28.1 bits (63), Expect = 1.9
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 9/44 (20%)
Query: 176 TDSEGKVVEGKHTVYRMS-----AAT----AEEKDEWIKCLSLH 210
TD+ + YRMS + KD+ + ++
Sbjct: 158 TDNTSGSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFC 201
>3klk_A Glucansucrase; native form, open conformation, multidomain protein,
glycosyltransferase, transferase; 1.65A {Lactobacillus
reuteri} PDB: 3kll_A* 3hz3_A*
Length = 1039
Score = 28.2 bits (62), Expect = 2.6
Identities = 14/120 (11%), Positives = 31/120 (25%), Gaps = 5/120 (4%)
Query: 12 WLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFILNDKCL 71
+L Y + + + + + SA N + ND
Sbjct: 820 FLDTLQKEYPQLFSQVYPVTQTTIDPSVKIKEWSAK-YFNGTNILHRGAGYVLRSNDGKY 878
Query: 72 YYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLW-KQGGRYKSWKRRWFILNDKCLYYF 130
Y +T + F + D F + + + + + + + YY
Sbjct: 879 YNLGTSTQQ-FLPSQLSVQDNEGYGFVKEGNNYHYYDENKQMVKDA--FIQDSVGNWYYL 935
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP:
b.55.1.1
Length = 150
Score = 27.3 bits (60), Expect = 2.7
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 57 KSWKRRWFILNDKCLYYFEYTTDKPFKIPEDD-----GNDLMHTFFNPDKEG 103
W +F+L +YY E T+ E++ G+ +H+ +G
Sbjct: 15 HEWYPHYFVLTSSKIYYSEETSSDQGNEDEEEPKEASGSTELHSSLEVLFQG 66
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural
genomics, structural genomics consortium, SGC; 2.39A
{Homo sapiens}
Length = 140
Score = 26.6 bits (58), Expect = 4.1
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 19/97 (19%)
Query: 117 RRWFILNDKCLYYFEYTTDKE-----PRGIIPLENIQVREVHDRHKPHCFELFTSGFEFI 171
R F+ ND + + K R L +QV +++ P+ L +S
Sbjct: 36 REIFLFNDLLVVTKIFQKKKNSVTYSFRQSFSLYGMQVLLFENQYYPNGIRLTSSV---- 91
Query: 172 KACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
++ KV + +A +++ ++ L
Sbjct: 92 ----PGADIKV------LINFNAPNPQDRKKFTDDLR 118
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid
(ONE-component...; beta-propeller, beta-sandwich; 3.30A
{Bacteroides thetaiotaomicron}
Length = 781
Score = 26.5 bits (59), Expect = 8.2
Identities = 13/101 (12%), Positives = 22/101 (21%), Gaps = 27/101 (26%)
Query: 27 WFILNDKCLYYFEYTTDK----------------SACLIENSSGRYKSWKRRWFILNDKC 70
W + + Y + T K + E G+ + +
Sbjct: 131 WVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAEDGKL------YIGHVEGG 184
Query: 71 LYYFEYTTDK--PFKIPEDDGNDLMHTFFN---PDKEGWLW 106
L F + N L D G +W
Sbjct: 185 LSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIW 225
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.487
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,489,822
Number of extensions: 196461
Number of successful extensions: 837
Number of sequences better than 10.0: 1
Number of HSP's gapped: 627
Number of HSP's successfully gapped: 232
Length of query: 210
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 121
Effective length of database: 4,216,824
Effective search space: 510235704
Effective search space used: 510235704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.5 bits)