BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17821
(194 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U27|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,3,4,5)p4
pdb|1U29|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,4,5)p3
Length = 129
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%), Gaps = 2/77 (2%)
Query: 10 EPRGIIPLENIQVREVHDRHKPHCFELFTSGF--EFIKACKTDSEGKVVEGKHTVYRMSA 67
EPRGIIPLEN+ +REV D KP+CFEL+ + IKACKT+++G+VVEG H VYR+SA
Sbjct: 50 EPRGIIPLENLSIREVDDPRKPNCFELYIPNNKGQLIKACKTEADGRVVEGNHMVYRISA 109
Query: 68 ATAEEKDEWIKYSEGKV 84
T EEKDEWIK + V
Sbjct: 110 PTQEEKDEWIKSIQAAV 126
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R0D|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 62/90 (68%), Gaps = 4/90 (4%)
Query: 10 EPRGIIPLENIQVREVHDRHKPHCFELFTSGF--EFIKACKTDSEGKVVEGKHTVYRMSA 67
EPRGIIPLEN+ +REV D KP+CFEL+ + IKACKT+++G+VVEG H VYR+SA
Sbjct: 251 EPRGIIPLENLSIREVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISA 310
Query: 68 ATAEEKDEWIKYSEGKVVEGKHTVYRMSAA 97
+ EEK+EW+K + + + Y M A
Sbjct: 311 PSPEEKEEWMKSIKASI--SRDPFYDMLAT 338
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/40 (75%), Positives = 33/40 (82%)
Query: 152 NNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKV 191
N+LL+ + VAQFLYKGEGLNKT IGDYLGER DFN KV
Sbjct: 39 NDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIKV 78
>pdb|1FHW|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
pdb|1FHW|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
Length = 129
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 62/90 (68%), Gaps = 4/90 (4%)
Query: 10 EPRGIIPLENIQVREVHDRHKPHCFELFTSGF--EFIKACKTDSEGKVVEGKHTVYRMSA 67
EPRGIIPLEN+ +REV D KP+CFEL+ + IKACKT+++G+VVEG H VYR+SA
Sbjct: 41 EPRGIIPLENLSIREVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISA 100
Query: 68 ATAEEKDEWIKYSEGKVVEGKHTVYRMSAA 97
+ EEK+EW+K + + + Y M A
Sbjct: 101 PSPEEKEEWMKSIKASI--SRDPFYDMLAT 128
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R09|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 55/71 (77%), Gaps = 2/71 (2%)
Query: 10 EPRGIIPLENIQVREVHDRHKPHCFELFTSGF--EFIKACKTDSEGKVVEGKHTVYRMSA 67
EPRGIIPLEN+ +REV D KP+CFEL+ + IKACKT+++G+VVEG H VYR+SA
Sbjct: 251 EPRGIIPLENLSIREVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISA 310
Query: 68 ATAEEKDEWIK 78
+ EEK+EW K
Sbjct: 311 PSPEEKEEWXK 321
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/40 (75%), Positives = 33/40 (82%)
Query: 152 NNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKV 191
N+LL+ + VAQFLYKGEGLNKT IGDYLGER DFN KV
Sbjct: 39 NDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIKV 78
>pdb|1U2B|A Chain A, Triglycine Variant Of The Grp1 Pleckstrin Homology Domain
Unliganded
Length = 138
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 56/71 (78%), Gaps = 2/71 (2%)
Query: 10 EPRGIIPLENIQVREVHDRHKPHCFELFTSGF--EFIKACKTDSEGKVVEGKHTVYRMSA 67
EPRGIIPLEN+ +REV D KP+CFEL+ + IKACKT+++G+VVEG H VYR+SA
Sbjct: 54 EPRGIIPLENLSIREVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISA 113
Query: 68 ATAEEKDEWIK 78
+ EEK+EW+K
Sbjct: 114 PSPEEKEEWMK 124
>pdb|1FHX|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
pdb|1FHX|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 129
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 55/71 (77%), Gaps = 2/71 (2%)
Query: 10 EPRGIIPLENIQVREVHDRHKPHCFELFTSGF--EFIKACKTDSEGKVVEGKHTVYRMSA 67
EPRGIIPLEN+ +REV D KP+CFEL+ + IKACKT+++G+VVEG H VYR+SA
Sbjct: 41 EPRGIIPLENLSIREVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISA 100
Query: 68 ATAEEKDEWIK 78
+ EEK+EW K
Sbjct: 101 PSPEEKEEWXK 111
>pdb|1FGY|A Chain A, Grp1 Ph Domain With Ins(1,3,4,5)p4
pdb|1FGZ|A Chain A, Grp1 Ph Domain (Unliganded)
Length = 127
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 55/71 (77%), Gaps = 2/71 (2%)
Query: 10 EPRGIIPLENIQVREVHDRHKPHCFELFTSGF--EFIKACKTDSEGKVVEGKHTVYRMSA 67
EPRGIIPLEN+ +REV D KP+CFEL+ + IKACKT+++G+VVEG H VYR+SA
Sbjct: 43 EPRGIIPLENLSIREVLDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISA 102
Query: 68 ATAEEKDEWIK 78
+ EEK+EW K
Sbjct: 103 PSPEEKEEWXK 113
>pdb|1BC9|A Chain A, Cytohesin-1B2-1 Sec7 Domain, Nmr, Minimized Average
Structure
Length = 200
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 34/40 (85%)
Query: 152 NNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKV 191
N+LL+ T +AQFLYKGEGLNKTAIGDYLGER +FN +V
Sbjct: 31 NDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFNIQV 70
>pdb|4A4P|A Chain A, Crystal Structure Of The Sec7 Domain From Human Cytohesin1
pdb|4A4P|B Chain B, Crystal Structure Of The Sec7 Domain From Human Cytohesin1
Length = 192
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 34/40 (85%)
Query: 152 NNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKV 191
N+LL+ T +AQFLYKGEGLNKTAIGDYLGER +FN +V
Sbjct: 31 NDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFNIQV 70
>pdb|1PBV|A Chain A, Sec7 Domain Of The Exchange Factor Arno
Length = 195
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 31/40 (77%)
Query: 152 NNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKV 191
N LL+ T +A+FLYKGEGLNKTAIGDYLGER + N V
Sbjct: 35 NELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAV 74
>pdb|1R8M|E Chain E, Sec7 Domain Of The Arf Exchange Factor Arno With Brefeldin
A- Sensitizing Mutations
pdb|1S9D|E Chain E, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
Length = 203
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 31/40 (77%)
Query: 152 NNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKV 191
N LL+ T +A+FLYKGEGLNKTAIGDYLGER + N V
Sbjct: 37 NELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAV 76
>pdb|1R8Q|E Chain E, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|F Chain F, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
Length = 203
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 31/40 (77%)
Query: 152 NNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKV 191
N LL+ T +A+FLYKGEGLNKTAIGDYLGER + N V
Sbjct: 37 NELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAV 76
>pdb|1R8S|E Chain E, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
Length = 203
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 31/40 (77%)
Query: 152 NNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKV 191
N LL+ T +A+FLYKGEGLNKTAIGDYLGER + N V
Sbjct: 37 NELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAV 76
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 27/41 (65%)
Query: 111 VHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
VHVVFG V+SG V+ IENL D SRP DVRV+ C L
Sbjct: 149 VHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVL 189
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG V+SGQ VV IEN D S+P +VR++ C EL
Sbjct: 140 HVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG V+SGQ VV IEN D S+P +VR++ C EL
Sbjct: 140 HVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG V+SGQ VV IEN D S+P +VR++ C EL
Sbjct: 157 HVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 196
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 29/41 (70%)
Query: 111 VHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
+HVVFG VVSGQ VV+ IE L + +RPL DV ++ C EL
Sbjct: 136 IHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG V+ G VV +E D +PL+DV + C ++
Sbjct: 135 HVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKI 174
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG V+ G VV +E D +PL+DV + C ++
Sbjct: 135 HVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKI 174
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG V+ G VV +E+ D +PL+DV + C ++
Sbjct: 138 HVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 177
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG V+ G VV +E+ D +PL+DV + C ++
Sbjct: 128 HVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 167
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG V+ G +VV IE + RP++ V++V EL
Sbjct: 133 HVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG V+ G +VV IE + RP++ V++V EL
Sbjct: 133 HVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG ++ G V+ IEN+P ++P V + +C E+
Sbjct: 138 HVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELNN 153
H VFG V G +V IE + DK +PL+D++++ ++NN
Sbjct: 120 HTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNI-KINN 160
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELN 152
HVVFG V+ G VV IE D RPL D +V +++
Sbjct: 130 HVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKID 170
>pdb|3L8N|A Chain A, Crystal Structure Of A Domain Of Brefeldin A-Inhibited
Guanine Nucleotide-Exchange Protein 2
(Brefeldina-Inhibited Gep 2) From Homo Sapiens (Human).
Northeast Structural Genomics Consortium Target Id
Hr5562a
pdb|3SWV|A Chain A, Crystal Structure Of A Domain Of Brefeldin A-Inhibited
Guanine Nucleotide-Exchange Protein 2 (Brefeldin
A-Inhibited Gep 2) From Homo Sapiens (Human), Northeast
Structural Genomics Consortium Target Id Hr5562a
Length = 202
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 162 VAQFLYKGEGLNKTAIGDYLGERHDFNEKV 191
+AQFL++ E L+ T +GD+LG+ FN++V
Sbjct: 44 IAQFLHQEERLDSTQVGDFLGDSARFNKEV 73
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELN 152
HVVFG V+ G VV IE D RPL + ++ +++
Sbjct: 138 HVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKID 178
>pdb|3LTL|A Chain A, Crystal Structure Of Human Big1 Sec7 Domain
pdb|3LTL|B Chain B, Crystal Structure Of Human Big1 Sec7 Domain
Length = 211
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 144 RVVKCNELNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKV 191
R ++ + +L T +AQFL++ E L+ T +G++LG+ FN++V
Sbjct: 35 RGIQYLQEQGMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDKFNKEV 82
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 102 KDEWIKCLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELN 152
K +W+ HVVFGHV+ G +VV IE+ K R + + + C +L+
Sbjct: 118 KTDWLD--GKHVVFGHVIEGMDVVKKIESFG-SKSGRTSKKIVITDCGQLS 165
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 102 KDEWIKCLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELN 152
K +W+ HVVFGHV+ G +VV IE+ K R + + + C +L+
Sbjct: 117 KTDWLD--GKHVVFGHVIEGMDVVKKIESFG-SKSGRTSKKIVITDCGQLS 164
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 102 KDEWIKCLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELN 152
K +W+ HVVFGHV+ G +VV IE+ K R + + + C +L+
Sbjct: 118 KTDWLD--GKHVVFGHVIEGMDVVKKIESFG-SKSGRTSKKIVITDCGQLS 165
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 102 KDEWIKCLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELN 152
K +W+ HVVFGHV+ G +VV IE+ K R + + + C +L+
Sbjct: 119 KTDWLD--GKHVVFGHVIEGMDVVKKIESFG-SKSGRTSKKIVITDCGQLS 166
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 102 KDEWIKCLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
K EW+ HVVFG VV G +VV +E+ + +P++D + C +L
Sbjct: 125 KTEWLD--GKHVVFGRVVEGLDVVKAVES-NGSQSGKPVKDCMIADCGQL 171
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 33.1 bits (74), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG VV GQNVV +E++ K + + V + +C EL
Sbjct: 133 HVVFGRVVDGQNVVKKMESVG-SKSGKVKEPVIISRCGEL 171
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVD-KMSRPLQDVRVVKCNELNNLLEPTEMGVAQ 164
H +FG VV G +V++ +EN+ D K RP +++R+ + E + +AQ
Sbjct: 134 HTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVFVDPYEEADAQIAQ 187
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG VV G +VV +EN +P + V++ C L
Sbjct: 127 HVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG V+ G V +EN+ V K +P + + +C EL
Sbjct: 146 HVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGEL 184
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVD-KMSRPLQDVRV 145
+ VFG V+ G + +E LPV+ K RPL DV +
Sbjct: 115 YTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHI 149
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVD-KMSRPLQDVRV 145
+ VFG V+ G + +E LPV+ K RPL DV +
Sbjct: 121 YTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHI 155
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRV 145
+V+FG ++ G ++ +EN P DK +P+ ++ +
Sbjct: 135 YVIFGKLIDGFETLNTLENCPSDKSHKPIDEIII 168
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVD-KMSRPLQDVRVV 146
H VFG V G VV I N+ V+ K +P +DV ++
Sbjct: 136 HTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSII 171
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 112 HVVFGHVVSGQNVVSHIEN---LPVDKMSRPLQDVRVVKCNEL 151
HVVFG ++ G +VV IE LP D RP QDV + +
Sbjct: 129 HVVFGKILEGMDVVRKIEQTEKLPGD---RPKQDVIIAASGHI 168
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKC 148
H +FG V G +V+ + + + RP+ DV+++K
Sbjct: 126 HTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA 162
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKC 148
H +FG V G +V+ + + + RP+ DV+++K
Sbjct: 126 HTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA 162
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKC 148
H +FG V G +V+ + + + RP+ DV+++K
Sbjct: 126 HTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA 162
>pdb|1JC9|A Chain A, Tachylectin 5a From Tachypleus Tridentatus (Japanese
Horseshoe Crab)
Length = 269
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 26 HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVY 63
HD H+ HC + + G+ + + +++ G + G+H Y
Sbjct: 199 HDTHETHCAQTYKGGWWYDRCHESNLNGLYLNGEHNSY 236
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKC 148
HVVFG V+ G NVV IE +P + + KC
Sbjct: 124 HVVFGEVIDGMNVVKAIE-AEGSGSGKPRSRIEIAKC 159
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 101 EKDEWIKCLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNE 150
+K +W+ HVVFG V G +V+ IE K +P Q V + C E
Sbjct: 126 DKTDWLD--GKHVVFGEVTEGLDVLRQIE-AQGSKDGKPKQKVIIADCGE 172
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 101 EKDEWIKCLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNE 150
+K +W+ HVVFG V G +V+ IE K +P Q V + C E
Sbjct: 125 DKTDWLD--GKHVVFGEVTEGLDVLRQIE-AQGSKDGKPKQKVIIADCGE 171
>pdb|3N00|A Chain A, Crystal Structure Of A Deletion Mutant Of Human Reverba
Ligand Binding Domain Bound With An Ncor Id1 Peptide
Determined To 2.60a
Length = 245
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 142 DVRVVKCNELNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKV 191
+V +V+ L N+ + T M +++ Y + L +GD L DF+EK+
Sbjct: 109 EVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKL 158
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 101 EKDEWIKCLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNE 150
+K +W+ HVVFG V G +V+ IE K +P Q V + C E
Sbjct: 117 DKTDWLD--GKHVVFGEVTEGLDVLRQIE-AQGSKDGKPKQKVIIADCGE 163
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 102 KDEWIKCLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
K EW+ HVVFG V G N+V +E + + + + + C +L
Sbjct: 118 KTEWLD--GXHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 164
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 102 KDEWIKCLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
K EW+ HVVFG V G N+V +E + + + + + C +L
Sbjct: 137 KTEWLD--GKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 183
>pdb|3PU5|A Chain A, The Crystal Structure Of A Putative Extracellular
Solute-Binding Protein From Bordetella Parapertussis
Length = 333
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 27 DRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYSEGKVVE 86
+R KPH F+ FT+ F T EG + G ++ + + +W+ +EG V
Sbjct: 182 ERXKPHIFKFFTA-FNDPVVLLTSGEGAIGPGWDGRTFIAEDSTKGXVKWVDPTEGAVSS 240
Query: 87 G 87
G
Sbjct: 241 G 241
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 102 KDEWIKCLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
K EW+ HVVFG V G N+V +E + + + + + C +L
Sbjct: 118 KTEWLD--GKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 164
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 102 KDEWIKCLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
K EW+ HVVFG V G N+V +E + + + + + C +L
Sbjct: 117 KTEWLD--GKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 163
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 102 KDEWIKCLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
K EW+ HVVFG V G N+V +E + + + + + C +L
Sbjct: 118 KTEWLD--GKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 164
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 102 KDEWIKCLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
K EW+ HVVFG V G N+V +E + + + + + C +L
Sbjct: 118 KTEWLD--GKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 164
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 102 KDEWIKCLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
K EW+ HVVFG V G N+V +E + + + + + C +L
Sbjct: 118 KTEWLD--GKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 164
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 102 KDEWIKCLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
K EW+ HVVFG V G N+V +E + + + + + C +L
Sbjct: 118 KTEWLD--GKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 164
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 102 KDEWIKCLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
K EW+ HVVFG V G N+V +E + + + + + C +L
Sbjct: 118 KTEWLD--GKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 164
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 102 KDEWIKCLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
K EW+ HVVFG V G N+V +E + + + + + C +L
Sbjct: 126 KTEWLD--GKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 172
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 102 KDEWIKCLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
K EW+ HVVFG V G N+V +E + + + + + C +L
Sbjct: 118 KTEWLD--GKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 164
>pdb|3S2W|A Chain A, The Crystal Structure Of A Marr Transcriptional Regulator
From Methanosarcina Mazei Go1
pdb|3S2W|B Chain B, The Crystal Structure Of A Marr Transcriptional Regulator
From Methanosarcina Mazei Go1
pdb|3S2W|C Chain C, The Crystal Structure Of A Marr Transcriptional Regulator
From Methanosarcina Mazei Go1
pdb|3S2W|D Chain D, The Crystal Structure Of A Marr Transcriptional Regulator
From Methanosarcina Mazei Go1
pdb|3S2W|E Chain E, The Crystal Structure Of A Marr Transcriptional Regulator
From Methanosarcina Mazei Go1
pdb|3S2W|F Chain F, The Crystal Structure Of A Marr Transcriptional Regulator
From Methanosarcina Mazei Go1
pdb|3S2W|G Chain G, The Crystal Structure Of A Marr Transcriptional Regulator
From Methanosarcina Mazei Go1
pdb|3S2W|H Chain H, The Crystal Structure Of A Marr Transcriptional Regulator
From Methanosarcina Mazei Go1
Length = 159
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 5/32 (15%)
Query: 155 LEPTEMGVAQF-----LYKGEGLNKTAIGDYL 181
+EP +G QF LY+ +G+N+ ++ DYL
Sbjct: 43 IEPYGIGSGQFPFLXRLYREDGINQESLSDYL 74
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 102 KDEWIKCLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
K +W+ HVVFG V G N+V +E + + + + + C +L
Sbjct: 118 KTKWLD--GXHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 164
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 112 HVVFGHVVSGQNVVSHIENL 131
HVVFG VV G ++V +E+L
Sbjct: 124 HVVFGEVVDGYDIVKKVESL 143
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 102 KDEWIKCLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
K EW+ HVVFG V G N+V E + + + + + C +L
Sbjct: 117 KTEWLD--GKHVVFGKVKEGXNIVEAXERFG-SRNGKTSKKITIADCGQL 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,143,922
Number of Sequences: 62578
Number of extensions: 246981
Number of successful extensions: 749
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 674
Number of HSP's gapped (non-prelim): 95
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)