Query psy17821
Match_columns 194
No_of_seqs 174 out of 1434
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 23:53:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17821.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17821hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546|consensus 100.0 3.9E-42 8.5E-47 297.0 9.6 137 17-153 10-180 (372)
2 KOG0880|consensus 100.0 4.3E-39 9.3E-44 258.2 9.3 135 20-164 44-212 (217)
3 KOG0879|consensus 100.0 7.6E-36 1.6E-40 227.2 7.7 129 20-151 15-177 (177)
4 cd01921 cyclophilin_RRM cyclop 100.0 5.8E-34 1.3E-38 227.1 10.6 123 25-161 2-166 (166)
5 cd01923 cyclophilin_RING cyclo 100.0 9.2E-34 2E-38 224.6 11.0 123 24-160 3-159 (159)
6 PTZ00221 cyclophilin; Provisio 100.0 2.1E-33 4.6E-38 235.9 12.3 129 25-153 62-221 (249)
7 KOG0881|consensus 100.0 2E-34 4.4E-39 217.1 4.7 116 24-150 13-162 (164)
8 cd01927 cyclophilin_WD40 cyclo 100.0 1.1E-32 2.4E-37 216.1 9.7 112 25-147 2-147 (148)
9 KOG0883|consensus 100.0 5.8E-33 1.3E-37 241.4 7.8 123 25-161 282-438 (518)
10 cd01928 Cyclophilin_PPIL3_like 100.0 3.1E-32 6.8E-37 214.6 10.4 115 24-149 4-152 (153)
11 PLN03149 peptidyl-prolyl isome 100.0 2.4E-32 5.1E-37 221.6 9.7 124 25-151 28-186 (186)
12 cd01922 cyclophilin_SpCYP2_lik 100.0 6.4E-32 1.4E-36 211.3 8.6 110 25-146 2-145 (146)
13 PTZ00060 cyclophilin; Provisio 100.0 2.3E-31 4.9E-36 215.4 11.4 129 21-152 21-183 (183)
14 COG0652 PpiB Peptidyl-prolyl c 100.0 1.4E-31 3.1E-36 211.1 9.6 117 24-151 3-157 (158)
15 cd01926 cyclophilin_ABH_like c 100.0 1.6E-31 3.5E-36 212.6 9.3 126 20-149 5-164 (164)
16 KOG0882|consensus 100.0 1.5E-31 3.3E-36 236.2 9.1 125 13-150 399-557 (558)
17 KOG0111|consensus 100.0 1.2E-31 2.5E-36 219.1 7.5 126 18-152 139-298 (298)
18 cd01925 cyclophilin_CeCYP16-li 100.0 7.3E-31 1.6E-35 210.3 11.1 127 24-164 9-170 (171)
19 PRK10791 peptidyl-prolyl cis-t 100.0 2.6E-30 5.7E-35 205.8 10.8 117 24-151 3-163 (164)
20 PRK10903 peptidyl-prolyl cis-t 100.0 6.2E-30 1.3E-34 208.1 10.7 117 24-151 32-189 (190)
21 KOG0884|consensus 100.0 9E-30 2E-34 191.0 9.4 118 25-153 5-157 (161)
22 cd01920 cyclophilin_EcCYP_like 100.0 6.3E-29 1.4E-33 196.1 9.3 112 25-147 2-154 (155)
23 KOG0415|consensus 100.0 3.1E-29 6.7E-34 216.1 7.8 122 23-155 3-166 (479)
24 cd00317 cyclophilin cyclophili 99.9 5.3E-27 1.1E-31 182.3 9.2 111 25-146 2-145 (146)
25 PF00160 Pro_isomerase: Cyclop 99.9 8.3E-26 1.8E-30 177.1 9.0 113 25-150 4-155 (155)
26 KOG0865|consensus 99.9 6.5E-25 1.4E-29 174.5 6.5 121 22-151 10-167 (167)
27 cd01924 cyclophilin_TLP40_like 99.9 9.2E-25 2E-29 175.8 7.3 95 26-131 3-165 (176)
28 KOG0885|consensus 99.9 2.3E-24 4.9E-29 187.0 6.8 132 24-169 16-182 (439)
29 KOG0930|consensus 99.4 1.1E-13 2.4E-18 117.3 0.6 91 6-98 295-387 (395)
30 KOG0930|consensus 99.1 9.8E-12 2.1E-16 105.6 -1.6 71 123-193 42-127 (395)
31 cd01256 PH_dynamin Dynamin ple 97.6 7E-05 1.5E-09 54.9 3.5 37 4-40 35-73 (110)
32 cd01245 PH_RasGAP_CG5898 RAS G 97.4 7.5E-05 1.6E-09 54.7 2.1 58 4-80 36-95 (98)
33 cd01252 PH_cytohesin Cytohesin 97.4 0.00011 2.4E-09 55.6 2.2 80 5-84 33-113 (125)
34 KOG0929|consensus 97.0 0.00012 2.6E-09 74.4 -0.8 54 136-192 526-579 (1514)
35 PLN03076 ARF guanine nucleotid 96.0 0.0014 3E-08 68.5 -0.7 41 153-193 642-682 (1780)
36 smart00222 Sec7 Sec7 domain. D 95.4 0.0027 5.8E-08 51.5 -1.0 36 157-192 33-68 (187)
37 cd00171 Sec7 Sec7 domain; Doma 95.1 0.0036 7.9E-08 50.7 -1.2 37 156-192 31-67 (185)
38 PF01369 Sec7: Sec7 domain; I 94.6 0.0042 9.1E-08 50.4 -2.2 37 156-192 35-71 (190)
39 cd01233 Unc104 Unc-104 pleckst 94.0 0.031 6.7E-07 40.5 1.6 60 5-84 35-98 (100)
40 KOG0882|consensus 93.8 0.16 3.6E-06 46.5 6.1 117 26-153 104-264 (558)
41 cd01220 PH_CDEP Chondrocyte-de 93.0 0.035 7.6E-07 40.5 0.6 56 9-84 41-97 (99)
42 cd01265 PH_PARIS-1 PARIS-1 ple 92.4 0.073 1.6E-06 38.3 1.6 56 4-80 35-90 (95)
43 cd01260 PH_CNK Connector enhan 89.9 0.59 1.3E-05 33.1 4.2 36 4-39 36-71 (96)
44 cd01264 PH_melted Melted pleck 89.3 0.19 4.1E-06 37.0 1.2 54 8-81 39-98 (101)
45 cd01235 PH_SETbf Set binding f 87.1 0.4 8.6E-06 34.1 1.7 20 5-24 34-53 (101)
46 cd01257 PH_IRS Insulin recepto 84.3 0.62 1.3E-05 34.1 1.6 32 9-40 46-78 (101)
47 COG5307 SEC7 domain proteins [ 81.5 0.35 7.6E-06 48.6 -0.8 55 136-192 279-334 (1024)
48 KOG0931|consensus 80.8 0.43 9.4E-06 43.9 -0.4 53 137-192 210-263 (627)
49 cd01238 PH_Tec Tec pleckstrin 78.3 1.3 2.9E-05 32.3 1.6 52 9-80 44-103 (106)
50 cd01247 PH_GPBP Goodpasture an 74.0 2.5 5.3E-05 30.1 2.0 51 9-80 38-88 (91)
51 cd01266 PH_Gab Gab (Grb2-assoc 70.8 2.9 6.3E-05 30.4 1.8 21 4-24 42-62 (108)
52 cd01251 PH_centaurin_alpha Cen 70.4 2.2 4.8E-05 31.0 1.1 58 4-81 32-97 (103)
53 TIGR03268 methan_mark_3 putati 65.5 3.5 7.7E-05 38.3 1.5 44 87-130 254-303 (503)
54 PRK00969 hypothetical protein; 63.1 4.2 9E-05 37.9 1.5 44 87-130 257-306 (508)
55 cd01244 PH_RasGAP_CG9209 RAS_G 58.7 6.7 0.00015 28.4 1.7 29 9-37 41-72 (98)
56 cd01236 PH_outspread Outspread 56.9 7.4 0.00016 28.6 1.7 31 7-37 45-77 (104)
57 KOG0928|consensus 52.6 3.6 7.7E-05 42.5 -0.8 34 157-192 546-579 (1386)
58 cd01263 PH_anillin Anillin Ple 42.5 25 0.00053 26.6 2.6 32 6-37 40-76 (122)
59 PF00169 PH: PH domain; Inter 39.6 44 0.00096 22.3 3.4 35 6-40 38-78 (104)
60 PF11314 DUF3117: Protein of u 36.3 22 0.00047 22.7 1.2 13 29-41 28-40 (51)
61 cd01250 PH_centaurin Centaurin 34.5 70 0.0015 21.5 3.8 31 9-39 39-70 (94)
62 PF10411 DsbC_N: Disulfide bon 31.8 33 0.00072 22.1 1.6 20 101-120 33-52 (57)
63 cd01246 PH_oxysterol_bp Oxyste 27.2 94 0.002 20.7 3.4 27 10-38 39-65 (91)
64 cd01219 PH_FGD FGD (faciogenit 22.7 47 0.001 23.7 1.2 52 9-80 44-95 (101)
65 COG4070 Predicted peptidyl-pro 22.1 31 0.00068 31.5 0.2 43 88-130 257-305 (512)
66 cd01237 Unc112 Unc-112 pleckst 20.4 1.1E+02 0.0024 22.6 2.7 32 6-37 38-72 (106)
No 1
>KOG0546|consensus
Probab=100.00 E-value=3.9e-42 Score=297.04 Aligned_cols=137 Identities=27% Similarity=0.349 Sum_probs=126.9
Q ss_pred cCCceeEeccccCccEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCccccCceeeec---------Cc
Q psy17821 17 LENIQVREVHDRHKPHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYS---------EG 82 (194)
Q Consensus 17 l~~~~v~~~~~~~g~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~---------g~ 82 (194)
+--+++-+-.++.|||+||||.+.| ||++||+|+..+....|+.|+|+++.||||+++|||||| |.
T Consensus 10 r~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtGGe 89 (372)
T KOG0546|consen 10 RVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTGGE 89 (372)
T ss_pred eEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCCcc
Confidence 3445566677889999999999988 999999999655678899999999999999999999995 78
Q ss_pred cccc-----------CCCceeecccccCC---Cccccee------eccceEEEeEEEccHHHHHHhhcCCcCCCCCCCcc
Q psy17821 83 KVVE-----------GKHTVYRMSAATAE---EKDEWIK------CLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQD 142 (194)
Q Consensus 83 si~g-----------~~~~g~l~man~g~---~sqf~i~------l~g~~vvFG~V~~G~dvv~~I~~~~~~~~~~P~~~ 142 (194)
|||| |++|++|||||+|| ||||||| |||+||||||||+|++||+.||++.+|..++|..+
T Consensus 90 SIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~~d 169 (372)
T KOG0546|consen 90 SIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPLAD 169 (372)
T ss_pred cccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCccc
Confidence 9998 99999999999999 9999999 79999999999999999999999999999999999
Q ss_pred eEEEEEeeecC
Q psy17821 143 VRVVKCNELNN 153 (194)
Q Consensus 143 i~I~~~g~~~~ 153 (194)
|+|.+||++..
T Consensus 170 V~I~dCGel~~ 180 (372)
T KOG0546|consen 170 VVISDCGELVK 180 (372)
T ss_pred eEecccccccc
Confidence 99999999986
No 2
>KOG0880|consensus
Probab=100.00 E-value=4.3e-39 Score=258.18 Aligned_cols=135 Identities=22% Similarity=0.239 Sum_probs=118.6
Q ss_pred ceeEeccccCccEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCccccCceeeec---------Ccccc
Q psy17821 20 IQVREVHDRHKPHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYS---------EGKVV 85 (194)
Q Consensus 20 ~~v~~~~~~~g~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~---------g~si~ 85 (194)
.+++.-+++.|||+|.||...+ ||++||++.. +...|.++.||||+|+|||||+ +.|||
T Consensus 44 fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~-------~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtGg~SIy 116 (217)
T KOG0880|consen 44 FDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGE-------KGYGYKGSKFHRVIPNFMIQGGDFTKGDGTGGKSIY 116 (217)
T ss_pred EEEEECCEeccEEEEEeccccchHHHHHHHHHHccCC-------CCcccCCceeeeeecCceeecCccccCCCCCCeEee
Confidence 3444567888999999999987 9999999431 3458999999999999999995 67899
Q ss_pred c-----------CCCceeecccccCC---Cccccee------eccceEEEeEEEccHHHHHHhhcCCcCCCCCCCcceEE
Q psy17821 86 E-----------GKHTVYRMSAATAE---EKDEWIK------CLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRV 145 (194)
Q Consensus 86 g-----------~~~~g~l~man~g~---~sqf~i~------l~g~~vvFG~V~~G~dvv~~I~~~~~~~~~~P~~~i~I 145 (194)
| |++||+|||||+|| ||||||| |||+|||||||++|||+|.+|++++||+.++|+++++|
T Consensus 117 G~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e~v~I 196 (217)
T KOG0880|consen 117 GEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLEDVVI 196 (217)
T ss_pred cCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccccEEE
Confidence 8 99999999999998 9999999 79999999999999999999999999999999999999
Q ss_pred EEEeeecCcCCCCchhhhh
Q psy17821 146 VKCNELNNLLEPTEMGVAQ 164 (194)
Q Consensus 146 ~~~g~~~~~l~p~~e~va~ 164 (194)
.+||.+.. ..++.++.
T Consensus 197 ~~~g~l~~---~~~~~~~~ 212 (217)
T KOG0880|consen 197 ANCGELPV---EYLESVED 212 (217)
T ss_pred eecCcccc---cchhhhhh
Confidence 99999885 33444443
No 3
>KOG0879|consensus
Probab=100.00 E-value=7.6e-36 Score=227.19 Aligned_cols=129 Identities=23% Similarity=0.265 Sum_probs=117.2
Q ss_pred ceeEeccccCccEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCccccCceeeec---------Ccccc
Q psy17821 20 IQVREVHDRHKPHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYS---------EGKVV 85 (194)
Q Consensus 20 ~~v~~~~~~~g~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~---------g~si~ 85 (194)
+.|.+-..+.|||.||||.+.+ ||++.|+++ ....|....|+++.|||++++|||||+ -.|||
T Consensus 15 ~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE---~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~sIy 91 (177)
T KOG0879|consen 15 FDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGE---YRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVASIY 91 (177)
T ss_pred EEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccc---cccCCccccccccchHHHhhhheeccCceecCCCceEEEEc
Confidence 4555566778999999999887 999999998 357788899999999999999999996 25788
Q ss_pred c-----------CCCceeecccccCC---Cccccee------eccceEEEeEEEccHHHHHHhhcCCcCCCCCCCcceEE
Q psy17821 86 E-----------GKHTVYRMSAATAE---EKDEWIK------CLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRV 145 (194)
Q Consensus 86 g-----------~~~~g~l~man~g~---~sqf~i~------l~g~~vvFG~V~~G~dvv~~I~~~~~~~~~~P~~~i~I 145 (194)
+ |+.||+|||||+|+ |+||||| |||||||||+|++|+.++++||++++..++||.-+|.|
T Consensus 92 ~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPKl~v~i 171 (177)
T KOG0879|consen 92 GSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPKLPVVI 171 (177)
T ss_pred CCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCCCcEEE
Confidence 7 99999999999998 8899999 69999999999999999999999999999999999999
Q ss_pred EEEeee
Q psy17821 146 VKCNEL 151 (194)
Q Consensus 146 ~~~g~~ 151 (194)
+.||+.
T Consensus 172 ~qCGem 177 (177)
T KOG0879|consen 172 VQCGEM 177 (177)
T ss_pred eecccC
Confidence 999863
No 4
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=5.8e-34 Score=227.11 Aligned_cols=123 Identities=24% Similarity=0.340 Sum_probs=110.2
Q ss_pred ccccCccEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCccccCceeeec--------Cccccc-----
Q psy17821 25 VHDRHKPHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYS--------EGKVVE----- 86 (194)
Q Consensus 25 ~~~~~g~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~--------g~si~g----- 86 (194)
++|+.|+|+||||.+.+ ||++||+.+ +|+++.|||+++++||||+ +.++|+
T Consensus 2 l~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~-----------~Y~g~~fhrvi~~f~iQgGd~~~~g~~~~~~~~~~~~~ 70 (166)
T cd01921 2 LETTLGDLVIDLFTDECPLACLNFLKLCKLK-----------YYNFCLFYNVQKDFIAQTGDPTGTGAGGESIYSQLYGR 70 (166)
T ss_pred cEeccCCEEEEEcCCCCCHHHHHHHHHHhcC-----------CcCCCEEEEEeCCceEEECCcCCCCCCCcccccccccc
Confidence 56889999999999987 999999998 9999999999999999996 223321
Q ss_pred --------------CCCceeecccccCC---Cccccee-------eccceEEEeEEEccHHHHHHhhcCCcCCCCCCCcc
Q psy17821 87 --------------GKHTVYRMSAATAE---EKDEWIK-------CLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQD 142 (194)
Q Consensus 87 --------------~~~~g~l~man~g~---~sqf~i~-------l~g~~vvFG~V~~G~dvv~~I~~~~~~~~~~P~~~ 142 (194)
|+.+|.++||+.++ +|||||+ ||++|+|||||++|||||++|++++++++++|.++
T Consensus 71 ~~~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~ 150 (166)
T cd01921 71 QARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKD 150 (166)
T ss_pred cCcccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCC
Confidence 66899999999887 8999998 46799999999999999999999999999999999
Q ss_pred eEEEEEeeecCcCCCCchh
Q psy17821 143 VRVVKCNELNNLLEPTEMG 161 (194)
Q Consensus 143 i~I~~~g~~~~~l~p~~e~ 161 (194)
|+|.+|+++.+ ||+++
T Consensus 151 i~I~~~~i~~~---pf~~~ 166 (166)
T cd01921 151 IRIKHTHILDD---PFPDP 166 (166)
T ss_pred eEEEEEEEECC---CCCCC
Confidence 99999999998 77653
No 5
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=9.2e-34 Score=224.57 Aligned_cols=123 Identities=21% Similarity=0.289 Sum_probs=111.9
Q ss_pred eccccCccEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCccccCceeeec--------Cccccc----
Q psy17821 24 EVHDRHKPHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYS--------EGKVVE---- 86 (194)
Q Consensus 24 ~~~~~~g~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~--------g~si~g---- 86 (194)
.++|+.|+|+||||.+.+ ||++||+.+ +|+++.|||++|++++|++ +.++|+
T Consensus 3 ~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~rv~~~~~iq~Gd~~~~g~~~~~~~g~~~~ 71 (159)
T cd01923 3 RLHTNKGDLNLELHCDKAPKACENFIKLCKKG-----------YYDGTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFK 71 (159)
T ss_pred EEEEccccEEEEEeCCCChHHHHHHHHHHhcC-----------ccCCcEEEEEeCCcEEEecccCCCCCCCccccCCccC
Confidence 477899999999999887 999999988 9999999999999999986 345554
Q ss_pred --------CCCceeecccccCC---Cccccee------eccceEEEeEEEccHHHHHHhhcCCcCCCCCCCcceEEEEEe
Q psy17821 87 --------GKHTVYRMSAATAE---EKDEWIK------CLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCN 149 (194)
Q Consensus 87 --------~~~~g~l~man~g~---~sqf~i~------l~g~~vvFG~V~~G~dvv~~I~~~~~~~~~~P~~~i~I~~~g 149 (194)
|+++|+++||+.++ +|||||+ ||++|+|||||++||++|++|++++++++++|.++|+|.+|.
T Consensus 72 ~E~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~ 151 (159)
T cd01923 72 DEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTS 151 (159)
T ss_pred cccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeE
Confidence 67899999999887 8899999 588999999999999999999999998899999999999999
Q ss_pred eecCcCCCCch
Q psy17821 150 ELNNLLEPTEM 160 (194)
Q Consensus 150 ~~~~~l~p~~e 160 (194)
++.+ ||++
T Consensus 152 i~~d---pf~~ 159 (159)
T cd01923 152 VFVD---PFEE 159 (159)
T ss_pred EEeC---CCCC
Confidence 9998 6654
No 6
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=2.1e-33 Score=235.94 Aligned_cols=129 Identities=19% Similarity=0.201 Sum_probs=112.5
Q ss_pred ccccCccEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCccccC-ceeeec-----Cccccc-------
Q psy17821 25 VHDRHKPHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKD-EWIKYS-----EGKVVE------- 86 (194)
Q Consensus 25 ~~~~~g~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~-~~iqg~-----g~si~g------- 86 (194)
-..+.|+|+||||.+.+ ||++||+++.......|..++|+++.|||++++ +|||+| +.++||
T Consensus 62 g~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~~g~s~~G~~f~dE~ 141 (249)
T PTZ00221 62 GDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDSFNVSSTGTPIADEG 141 (249)
T ss_pred CCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCCCCccCCCCcccCcc
Confidence 34568999999999987 999999987432233455667999999999986 899986 445554
Q ss_pred ----CCCceeecccccCC---Cccccee------eccceEEEeEEEccHHHHHHhhcCCcCCCCCCCcceEEEEEeeecC
Q psy17821 87 ----GKHTVYRMSAATAE---EKDEWIK------CLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELNN 153 (194)
Q Consensus 87 ----~~~~g~l~man~g~---~sqf~i~------l~g~~vvFG~V~~G~dvv~~I~~~~~~~~~~P~~~i~I~~~g~~~~ 153 (194)
|+++|+|+|||.|+ +|||||+ ||++|||||+|++||+||++|++++++..++|.++|+|.+||++..
T Consensus 142 ~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP~~~V~I~~Cgvl~~ 221 (249)
T PTZ00221 142 YRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCGALTG 221 (249)
T ss_pred ccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCCCCCeEEEECeEecC
Confidence 88999999999998 8999999 5899999999999999999999999988899999999999999998
No 7
>KOG0881|consensus
Probab=100.00 E-value=2e-34 Score=217.08 Aligned_cols=116 Identities=18% Similarity=0.235 Sum_probs=108.8
Q ss_pred eccccCccEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCccccCceeeec--------Cccccc----
Q psy17821 24 EVHDRHKPHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYS--------EGKVVE---- 86 (194)
Q Consensus 24 ~~~~~~g~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~--------g~si~g---- 86 (194)
..++++|.|++|||-+.+ ||..|++.+ ||+++.|||++++|||||+ |.||||
T Consensus 13 ~LeTsmG~i~~ElY~kHaP~TC~NF~eLarrg-----------YYn~v~FHRii~DFmiQGGDPTGTGRGGaSIYG~kF~ 81 (164)
T KOG0881|consen 13 TLETSMGKITLELYWKHAPRTCQNFAELARRG-----------YYNGVIFHRIIKDFMIQGGDPTGTGRGGASIYGDKFE 81 (164)
T ss_pred EEeecccceehhhhhhcCcHHHHHHHHHHhcc-----------cccceeeeehhhhheeecCCCCCCCCCccccccchhh
Confidence 478899999999997766 999999999 9999999999999999995 789998
Q ss_pred --------CCCceeecccccCC---Cccccee------eccceEEEeEEEccHHHHHHhhcCCcCCCCCCCcceEEEEEe
Q psy17821 87 --------GKHTVYRMSAATAE---EKDEWIK------CLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCN 149 (194)
Q Consensus 87 --------~~~~g~l~man~g~---~sqf~i~------l~g~~vvFG~V~~G~dvv~~I~~~~~~~~~~P~~~i~I~~~g 149 (194)
|..+|.|||||+|| ||||||| |||||++||+|..||+|++++-.+.||+++||+.+++|.++.
T Consensus 82 DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika~ 161 (164)
T KOG0881|consen 82 DEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKAY 161 (164)
T ss_pred hhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEeee
Confidence 88999999999999 8999999 599999999999999999999999999999999999999875
Q ss_pred e
Q psy17821 150 E 150 (194)
Q Consensus 150 ~ 150 (194)
.
T Consensus 162 ~ 162 (164)
T KOG0881|consen 162 P 162 (164)
T ss_pred c
Confidence 4
No 8
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=99.98 E-value=1.1e-32 Score=216.08 Aligned_cols=112 Identities=23% Similarity=0.330 Sum_probs=102.1
Q ss_pred ccccCccEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCccccCceeeec--------Cccccc-----
Q psy17821 25 VHDRHKPHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYS--------EGKVVE----- 86 (194)
Q Consensus 25 ~~~~~g~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~--------g~si~g----- 86 (194)
++|+.|+|+||||.+.+ ||++||+.+ +|+++.|||++|+|++|++ +.++|+
T Consensus 2 i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~Rvi~~f~iq~Gd~~~~g~g~~~~~~~~~~~ 70 (148)
T cd01927 2 IHTTKGDIHIRLFPEEAPKTVENFTTHARNG-----------YYNNTIFHRVIKGFMIQTGDPTGDGTGGESIWGKEFED 70 (148)
T ss_pred eEeccccEEEEEeCCCCcHHHHHHHHHhhcC-----------CcCCcEEEEEcCCcEEEecccCCCCCCCCcccCCcccc
Confidence 56789999999999877 999999998 9999999999999999996 335554
Q ss_pred -------CCCceeecccccCC---Cccccee------eccceEEEeEEEccHHHHHHhhcCCcCCCCCCCcceEEEE
Q psy17821 87 -------GKHTVYRMSAATAE---EKDEWIK------CLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVK 147 (194)
Q Consensus 87 -------~~~~g~l~man~g~---~sqf~i~------l~g~~vvFG~V~~G~dvv~~I~~~~~~~~~~P~~~i~I~~ 147 (194)
|+++|.++||+.++ +|||||+ ||++|+|||||++|||||++|++++++++++|.++|+|.+
T Consensus 71 e~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 71 EFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred ccccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 77789999999887 8899998 5889999999999999999999999998999999999985
No 9
>KOG0883|consensus
Probab=99.98 E-value=5.8e-33 Score=241.40 Aligned_cols=123 Identities=20% Similarity=0.302 Sum_probs=114.9
Q ss_pred ccccCccEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCccccCceeeec--------Cccccc-----
Q psy17821 25 VHDRHKPHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYS--------EGKVVE----- 86 (194)
Q Consensus 25 ~~~~~g~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~--------g~si~g----- 86 (194)
+.+..|++-+||+++.+ |||+||+.+ ||+++.|||.+++|||||+ |+||||
T Consensus 282 l~Tn~G~lNlELhcd~~P~aceNFI~lc~~g-----------YYnnt~FHRsIrnFmiQGGDPTGTG~GGeSiWgKpFkD 350 (518)
T KOG0883|consen 282 LVTNHGPLNLELHCDYAPRACENFITLCKNG-----------YYNNTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKD 350 (518)
T ss_pred EeccCCceeeEeecCcchHHHHHHHHHHhcc-----------cccchHHHHHHHHHeeeCCCCCCCCCCCccccCCcccc
Confidence 45678999999999987 999999999 9999999999999999995 789998
Q ss_pred -------CCCceeecccccCC---Cccccee------eccceEEEeEEEccHHHHHHhhcCCcCCCCCCCcceEEEEEee
Q psy17821 87 -------GKHTVYRMSAATAE---EKDEWIK------CLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNE 150 (194)
Q Consensus 87 -------~~~~g~l~man~g~---~sqf~i~------l~g~~vvFG~V~~G~dvv~~I~~~~~~~~~~P~~~i~I~~~g~ 150 (194)
|+.+|+|||||+|+ ||||||+ ||++||+||+|+-|+|+|.+||++++++.++|..+|+|.++-+
T Consensus 351 Ef~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~V 430 (518)
T KOG0883|consen 351 EFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIV 430 (518)
T ss_pred ccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEE
Confidence 99999999999998 9999999 7999999999999999999999999999999999999999999
Q ss_pred ecCcCCCCchh
Q psy17821 151 LNNLLEPTEMG 161 (194)
Q Consensus 151 ~~~~l~p~~e~ 161 (194)
+.+ ||.+.
T Consensus 431 FVd---PfeEa 438 (518)
T KOG0883|consen 431 FVD---PFEEA 438 (518)
T ss_pred eeC---cHHHH
Confidence 988 55443
No 10
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=99.97 E-value=3.1e-32 Score=214.60 Aligned_cols=115 Identities=22% Similarity=0.316 Sum_probs=104.4
Q ss_pred eccccCccEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCccccCceeeec--------Cccccc----
Q psy17821 24 EVHDRHKPHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYS--------EGKVVE---- 86 (194)
Q Consensus 24 ~~~~~~g~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~--------g~si~g---- 86 (194)
.++|+.|+|+||||.+.+ ||++||+++ +|+++.|||++++||+|++ +.++|+
T Consensus 4 ~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~rv~~~f~iq~Gd~~~~g~g~~~~~~~~~~ 72 (153)
T cd01928 4 TLHTNLGDIKIELFCDDCPKACENFLALCASG-----------YYNGCIFHRNIKGFMVQTGDPTGTGKGGESIWGKKFE 72 (153)
T ss_pred EEEEccccEEEEEcCCCCcHHHHHHHHHHhcC-----------ccCCcEEEEeCCCCEEEccccCCCCCCCCccCCCccc
Confidence 467899999999999887 999999998 9999999999999999986 234443
Q ss_pred --------CCCceeecccccCC---Cccccee------eccceEEEeEEEccHHHHHHhhcCCcCCCCCCCcceEEEEEe
Q psy17821 87 --------GKHTVYRMSAATAE---EKDEWIK------CLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCN 149 (194)
Q Consensus 87 --------~~~~g~l~man~g~---~sqf~i~------l~g~~vvFG~V~~G~dvv~~I~~~~~~~~~~P~~~i~I~~~g 149 (194)
|+.+|+++||+.++ +|||||+ ||++|+|||||++|||||++|++++++++++|..+|+|.+|.
T Consensus 73 ~e~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~ 152 (153)
T cd01928 73 DEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVT 152 (153)
T ss_pred cccccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence 67899999999887 8999999 588999999999999999999999999899999999999874
No 11
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=99.97 E-value=2.4e-32 Score=221.62 Aligned_cols=124 Identities=23% Similarity=0.196 Sum_probs=106.4
Q ss_pred ccccCccEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCccccCceeeec---------Cccccc----
Q psy17821 25 VHDRHKPHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYS---------EGKVVE---- 86 (194)
Q Consensus 25 ~~~~~g~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~---------g~si~g---- 86 (194)
-.++.|+|+||||.+.+ ||++||+++. ...|....|+++.||||+++||||++ +.++|+
T Consensus 28 ~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~---~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~~~g~~f~ 104 (186)
T PLN03149 28 GGIPAGRIKMELFADIAPKTAENFRQFCTGEF---RKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVSIYGSKFE 104 (186)
T ss_pred CCcccccEEEEEcCCCCcHHHHHHHHHHhhhc---cccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCcccccCCccC
Confidence 34567999999999987 9999998762 11223346999999999999999986 235554
Q ss_pred -------CCCceeecccccCC---Cccccee------eccceEEEeEEE-ccHHHHHHhhcCCcCCCCCCCcceEEEEEe
Q psy17821 87 -------GKHTVYRMSAATAE---EKDEWIK------CLRVHVVFGHVV-SGQNVVSHIENLPVDKMSRPLQDVRVVKCN 149 (194)
Q Consensus 87 -------~~~~g~l~man~g~---~sqf~i~------l~g~~vvFG~V~-~G~dvv~~I~~~~~~~~~~P~~~i~I~~~g 149 (194)
|+++|+++|||.++ +|||||+ ||++|+|||||+ +||+||++|++++++.+++|..+|+|.+||
T Consensus 105 ~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i~I~~cG 184 (186)
T PLN03149 105 DENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECG 184 (186)
T ss_pred CcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCeEEEeCE
Confidence 78899999999987 8899999 588999999999 799999999999999899999999999999
Q ss_pred ee
Q psy17821 150 EL 151 (194)
Q Consensus 150 ~~ 151 (194)
++
T Consensus 185 ~~ 186 (186)
T PLN03149 185 EM 186 (186)
T ss_pred eC
Confidence 74
No 12
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=99.97 E-value=6.4e-32 Score=211.30 Aligned_cols=110 Identities=17% Similarity=0.238 Sum_probs=99.8
Q ss_pred ccccCccEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCccccCceeeec--------Cccccc-----
Q psy17821 25 VHDRHKPHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYS--------EGKVVE----- 86 (194)
Q Consensus 25 ~~~~~g~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~--------g~si~g----- 86 (194)
+.|+.|+|+||||.+.+ ||++||+.+ +|+++.|||++|+|++|++ +.|+|+
T Consensus 2 i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~Rvi~~f~iq~Gd~~~~g~~~~~~~~~~~~~ 70 (146)
T cd01922 2 LETTMGEITLELYWNHAPKTCKNFYELAKRG-----------YYNGTIFHRLIKDFMIQGGDPTGTGRGGASIYGKKFED 70 (146)
T ss_pred eEeccccEEEEEcCCCCcHHHHHHHHHHhcC-----------CcCCcEEEEEcCCcEEEecccCCCCCCcccccCCCccc
Confidence 46789999999999887 999999988 9999999999999999986 335554
Q ss_pred -------CCCceeecccccCC---Cccccee------eccceEEEeEEEccHHHHHHhhcCCcCCCCCCCcceEEE
Q psy17821 87 -------GKHTVYRMSAATAE---EKDEWIK------CLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVV 146 (194)
Q Consensus 87 -------~~~~g~l~man~g~---~sqf~i~------l~g~~vvFG~V~~G~dvv~~I~~~~~~~~~~P~~~i~I~ 146 (194)
|+++|+++||+.++ +|||||+ ||++|+|||||++|||||++|++++++ +++|.++|+|.
T Consensus 71 e~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~ 145 (146)
T cd01922 71 EIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKIL 145 (146)
T ss_pred ccccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEe
Confidence 67799999999887 8899999 588999999999999999999999998 88999999986
No 13
>PTZ00060 cyclophilin; Provisional
Probab=99.97 E-value=2.3e-31 Score=215.38 Aligned_cols=129 Identities=23% Similarity=0.266 Sum_probs=109.4
Q ss_pred eeEeccccCccEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCccccCceeeec---------Cccccc
Q psy17821 21 QVREVHDRHKPHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYS---------EGKVVE 86 (194)
Q Consensus 21 ~v~~~~~~~g~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~---------g~si~g 86 (194)
.+.+..++.|+|+||||.+.+ ||++||++...+. .|+..+|+++.|||++|++|||++ +.++|+
T Consensus 21 di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~--~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~g~~~~g 98 (183)
T PTZ00060 21 DISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGS--SGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGGESIYG 98 (183)
T ss_pred EEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccc--cCcccccCCeEEEEEcCCCeEEeCCccCCCCCCCCcccc
Confidence 444455678999999999987 9999999763321 345569999999999999999986 234554
Q ss_pred -----------CCCceeecccccCC---Cccccee------eccceEEEeEEEccHHHHHHhhcCCcCCCCCCCcceEEE
Q psy17821 87 -----------GKHTVYRMSAATAE---EKDEWIK------CLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVV 146 (194)
Q Consensus 87 -----------~~~~g~l~man~g~---~sqf~i~------l~g~~vvFG~V~~G~dvv~~I~~~~~~~~~~P~~~i~I~ 146 (194)
|+++|+++||+.++ +|||||+ ||++|+|||||++|||||++|+++++ .+++|.++|+|.
T Consensus 99 ~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~-~~~~P~~~v~I~ 177 (183)
T PTZ00060 99 RKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGT-QSGYPKKPVVVT 177 (183)
T ss_pred cccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCC-CCCCCcCCeEEE
Confidence 77899999999887 8999999 58899999999999999999999998 468999999999
Q ss_pred EEeeec
Q psy17821 147 KCNELN 152 (194)
Q Consensus 147 ~~g~~~ 152 (194)
+||++.
T Consensus 178 ~cg~~~ 183 (183)
T PTZ00060 178 DCGELQ 183 (183)
T ss_pred EeEEcC
Confidence 999863
No 14
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-31 Score=211.08 Aligned_cols=117 Identities=20% Similarity=0.231 Sum_probs=99.0
Q ss_pred eccccCccEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCccccCceeeecC---c--------ccc--
Q psy17821 24 EVHDRHKPHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYSE---G--------KVV-- 85 (194)
Q Consensus 24 ~~~~~~g~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~g---~--------si~-- 85 (194)
.+.+..|+|+||||++.| ||++||+.+ +|+++.||||+++|||||+. . ++-
T Consensus 3 ~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g-----------~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~~~~f~~E 71 (158)
T COG0652 3 ILETNKGDITIELYPDKAPKTVANFLQLVKEG-----------FYDGTIFHRVIPGFMIQGGDPTGGDGTGGPGPPFKDE 71 (158)
T ss_pred eeeccCCCEEEEECCCcCcHHHHHHHHHHHcC-----------CCCCceEEEeecCceeecCCCCCCCCCCCCCCCCccc
Confidence 467889999999999988 999999988 99999999999999999961 1 111
Q ss_pred ----cCCC--ceeecccccC-C---Cccccee------eccceEEEeEEEccHHHHHHhhcCCcCCC----CCCCcceEE
Q psy17821 86 ----EGKH--TVYRMSAATA-E---EKDEWIK------CLRVHVVFGHVVSGQNVVSHIENLPVDKM----SRPLQDVRV 145 (194)
Q Consensus 86 ----g~~~--~g~l~man~g-~---~sqf~i~------l~g~~vvFG~V~~G~dvv~~I~~~~~~~~----~~P~~~i~I 145 (194)
.|++ +|+|||||++ | +|||||+ ||++|+|||+|++|||+|++|++..+... +.|..+++|
T Consensus 72 ~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i 151 (158)
T COG0652 72 NFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKI 151 (158)
T ss_pred ccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEE
Confidence 1555 9999999999 6 8999999 68999999999999999999999988753 456677888
Q ss_pred EEEeee
Q psy17821 146 VKCNEL 151 (194)
Q Consensus 146 ~~~g~~ 151 (194)
....++
T Consensus 152 ~~~~~~ 157 (158)
T COG0652 152 LSVKIV 157 (158)
T ss_pred eeeeee
Confidence 776543
No 15
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=99.97 E-value=1.6e-31 Score=212.62 Aligned_cols=126 Identities=24% Similarity=0.275 Sum_probs=106.4
Q ss_pred ceeEeccccCccEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCccccCceeeec---------Ccccc
Q psy17821 20 IQVREVHDRHKPHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYS---------EGKVV 85 (194)
Q Consensus 20 ~~v~~~~~~~g~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~---------g~si~ 85 (194)
+.+.+-.++.|+|+||||.+.+ ||++||++... .. .+..+|+++.|||++|+||||++ +.++|
T Consensus 5 ~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g-~~--~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~~ 81 (164)
T cd01926 5 FDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKG-KG--GKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSIY 81 (164)
T ss_pred EEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCC-Cc--ccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCccc
Confidence 3444556678999999999877 99999986411 10 02348999999999999999986 23555
Q ss_pred c-----------CCCceeecccccCC---Cccccee------eccceEEEeEEEccHHHHHHhhcCCcCCCCCCCcceEE
Q psy17821 86 E-----------GKHTVYRMSAATAE---EKDEWIK------CLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRV 145 (194)
Q Consensus 86 g-----------~~~~g~l~man~g~---~sqf~i~------l~g~~vvFG~V~~G~dvv~~I~~~~~~~~~~P~~~i~I 145 (194)
+ |+.+|+++||+.++ +|||||+ ||++|+|||||++|||||++|++++++ +++|..+|+|
T Consensus 82 g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~~i~I 160 (164)
T cd01926 82 GEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKKVVI 160 (164)
T ss_pred CCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcCCeEE
Confidence 4 77899999999887 8999999 588999999999999999999999998 8999999999
Q ss_pred EEEe
Q psy17821 146 VKCN 149 (194)
Q Consensus 146 ~~~g 149 (194)
.+||
T Consensus 161 ~~cG 164 (164)
T cd01926 161 ADCG 164 (164)
T ss_pred EECC
Confidence 9997
No 16
>KOG0882|consensus
Probab=99.97 E-value=1.5e-31 Score=236.20 Aligned_cols=125 Identities=21% Similarity=0.294 Sum_probs=116.4
Q ss_pred eeeecCCceeEeccccCccEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCccccCceeeec-------
Q psy17821 13 GIIPLENIQVREVHDRHKPHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYS------- 80 (194)
Q Consensus 13 G~i~l~~~~v~~~~~~~g~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~------- 80 (194)
|.+-|....+ ++++.|+|.+.||+++| ||...|+.+ ||++..||||+++||||++
T Consensus 399 g~~~l~~~ai--ihtt~gdi~~kl~p~ecpktvenf~th~rng-----------yy~~~~fhriik~fmiqtgdp~g~gt 465 (558)
T KOG0882|consen 399 GNKLLGKAAI--IHTTQGDIHIKLYPEECPKTVENFTTHSRNG-----------YYDNHTFHRIIKGFMIQTGDPLGDGT 465 (558)
T ss_pred CceecccceE--EEecccceEEEecccccchhhhhhhccccCc-----------cccCcchHHhhhhheeecCCCCCCCC
Confidence 6667766554 89999999999999998 999999998 9999999999999999995
Q ss_pred -Cccccc------------CCCceeecccccCC---Cccccee------eccceEEEeEEEccHHHHHHhhcCCcCCCCC
Q psy17821 81 -EGKVVE------------GKHTVYRMSAATAE---EKDEWIK------CLRVHVVFGHVVSGQNVVSHIENLPVDKMSR 138 (194)
Q Consensus 81 -g~si~g------------~~~~g~l~man~g~---~sqf~i~------l~g~~vvFG~V~~G~dvv~~I~~~~~~~~~~ 138 (194)
|+|||| |++|..+||||+|+ ||||||| |||||||||+|+.|||||++|+++.|++.+|
T Consensus 466 ggesiwg~dfedefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~dr 545 (558)
T KOG0882|consen 466 GGESIWGKDFEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDR 545 (558)
T ss_pred CCcccccccchhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCC
Confidence 789998 99999999999998 9999999 7999999999999999999999999999999
Q ss_pred CCcceEEEEEee
Q psy17821 139 PLQDVRVVKCNE 150 (194)
Q Consensus 139 P~~~i~I~~~g~ 150 (194)
|.+++.|.++.+
T Consensus 546 p~e~v~iinisv 557 (558)
T KOG0882|consen 546 PYEDVKIINISV 557 (558)
T ss_pred CCCceeEEEEec
Confidence 999999998653
No 17
>KOG0111|consensus
Probab=99.97 E-value=1.2e-31 Score=219.06 Aligned_cols=126 Identities=24% Similarity=0.242 Sum_probs=114.8
Q ss_pred CCceeEeccccCccEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCccccCceeeec---------Ccc
Q psy17821 18 ENIQVREVHDRHKPHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYS---------EGK 83 (194)
Q Consensus 18 ~~~~v~~~~~~~g~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~---------g~s 83 (194)
....+.+-.+..|||++.|-++.+ ||+.||+++ +...|++|.||||+|.||+||+ |.|
T Consensus 139 v~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge--------~gfgykgssfhriip~fmcqggdftn~ngtggks 210 (298)
T KOG0111|consen 139 VYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGE--------AGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKS 210 (298)
T ss_pred hhhheeecccccceEEEeecccCChhhhhhhhhhcccc--------CccCccccchhhhhhhhhccCCccccCCCCCCcc
Confidence 345566677889999999998876 999999998 5668999999999999999995 789
Q ss_pred ccc-----------CCCceeecccccCC---Cccccee------eccceEEEeEEEccHHHHHHhhcCCcCCCCCCCcce
Q psy17821 84 VVE-----------GKHTVYRMSAATAE---EKDEWIK------CLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDV 143 (194)
Q Consensus 84 i~g-----------~~~~g~l~man~g~---~sqf~i~------l~g~~vvFG~V~~G~dvv~~I~~~~~~~~~~P~~~i 143 (194)
||| |..||.|||||.|+ ||||||+ |||+|||||.|++||+||+++++.++ +.++|.+.|
T Consensus 211 iygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgs-ksgkp~qkv 289 (298)
T KOG0111|consen 211 IYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGS-KSGKPQQKV 289 (298)
T ss_pred cccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccC-CCCCcceEE
Confidence 998 89999999999998 9999999 68999999999999999999999997 689999999
Q ss_pred EEEEEeeec
Q psy17821 144 RVVKCNELN 152 (194)
Q Consensus 144 ~I~~~g~~~ 152 (194)
+|.+||.+.
T Consensus 290 ~i~~cge~~ 298 (298)
T KOG0111|consen 290 KIVECGEIE 298 (298)
T ss_pred EEEeccccC
Confidence 999999863
No 18
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=99.97 E-value=7.3e-31 Score=210.28 Aligned_cols=127 Identities=16% Similarity=0.167 Sum_probs=113.2
Q ss_pred eccccCccEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCccccCceeeec--------Cccccc----
Q psy17821 24 EVHDRHKPHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYS--------EGKVVE---- 86 (194)
Q Consensus 24 ~~~~~~g~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~--------g~si~g---- 86 (194)
.+.|+.|+|+||||.+.+ ||++||+.+ +|+++.|||++++||||++ +.|+|+
T Consensus 9 ~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~-----------~Y~~~~f~Rvi~~f~iQgGd~~~~g~g~~s~~g~~~~ 77 (171)
T cd01925 9 ILKTTAGDIDIELWSKEAPKACRNFIQLCLEG-----------YYDNTIFHRVVPGFIIQGGDPTGTGTGGESIYGEPFK 77 (171)
T ss_pred EEEEccccEEEEEeCCCChHHHHHHHHHHhcC-----------CCCCCEEEEEcCCcEEEccccCCCCccCcccCCCccC
Confidence 467889999999999877 999999988 9999999999999999986 346665
Q ss_pred --------CCCceeecccccCC---Cccccee------eccceEEEeEEEc-cHHHHHHhhcCCcCCCCCCCcceEEEEE
Q psy17821 87 --------GKHTVYRMSAATAE---EKDEWIK------CLRVHVVFGHVVS-GQNVVSHIENLPVDKMSRPLQDVRVVKC 148 (194)
Q Consensus 87 --------~~~~g~l~man~g~---~sqf~i~------l~g~~vvFG~V~~-G~dvv~~I~~~~~~~~~~P~~~i~I~~~ 148 (194)
|+++|+++||+.++ +|||||+ ||++|+|||+|+. +++++++|++++++++++|..+|+|.+|
T Consensus 78 ~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~ 157 (171)
T cd01925 78 DEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSV 157 (171)
T ss_pred cccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEE
Confidence 67899999999887 8999998 5889999999993 5788999999999989999999999999
Q ss_pred eeecCcCCCCchhhhh
Q psy17821 149 NELNNLLEPTEMGVAQ 164 (194)
Q Consensus 149 g~~~~~l~p~~e~va~ 164 (194)
+++.+ |+++-+|.
T Consensus 158 ~i~~~---pf~~~~~~ 170 (171)
T cd01925 158 EVLEN---PFDDIVPR 170 (171)
T ss_pred EEEcC---Cchhhccc
Confidence 99997 77777653
No 19
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=99.97 E-value=2.6e-30 Score=205.84 Aligned_cols=117 Identities=18% Similarity=0.212 Sum_probs=100.6
Q ss_pred eccccCccEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCccccCceeeecC------c-----cccc-
Q psy17821 24 EVHDRHKPHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYSE------G-----KVVE- 86 (194)
Q Consensus 24 ~~~~~~g~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~g------~-----si~g- 86 (194)
.+.|+.|+|+|+||.+.+ ||++||+.+ +|+++.|||++|+|||||+. . +++.
T Consensus 3 ~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Yd~~~fhRvi~~f~iQgGd~~~~~~~~~~~~~~~~e 71 (164)
T PRK10791 3 TFHTNHGDIVIKTFDDKAPETVKNFLDYCREG-----------FYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNE 71 (164)
T ss_pred EEEEccccEEEEEeCCCCcHHHHHHHHHHhcC-----------CcCCcEEEEEecCcEEEeCCcCCCCCcCCCCCCcCCc
Confidence 367899999999999987 999999998 99999999999999999972 1 1111
Q ss_pred -----CCCceeecccccC-C---Ccccceee------c--------cceEEEeEEEccHHHHHHhhcCCcCCC----CCC
Q psy17821 87 -----GKHTVYRMSAATA-E---EKDEWIKC------L--------RVHVVFGHVVSGQNVVSHIENLPVDKM----SRP 139 (194)
Q Consensus 87 -----~~~~g~l~man~g-~---~sqf~i~l------~--------g~~vvFG~V~~G~dvv~~I~~~~~~~~----~~P 139 (194)
++.+|++||||.+ + +|||||++ | ++|||||+|++|||||++|+++++++. ++|
T Consensus 72 ~~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P 151 (164)
T PRK10791 72 ANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVP 151 (164)
T ss_pred ccccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCc
Confidence 5679999999875 4 89999985 2 279999999999999999999999763 699
Q ss_pred CcceEEEEEeee
Q psy17821 140 LQDVRVVKCNEL 151 (194)
Q Consensus 140 ~~~i~I~~~g~~ 151 (194)
..+|+|.+|.+.
T Consensus 152 ~~~v~I~~~~i~ 163 (164)
T PRK10791 152 KEDVIIESVTVS 163 (164)
T ss_pred CCCeEEEEEEEe
Confidence 999999998654
No 20
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=99.96 E-value=6.2e-30 Score=208.10 Aligned_cols=117 Identities=19% Similarity=0.170 Sum_probs=102.0
Q ss_pred eccccCccEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCccccCceeeecC------ccccc------
Q psy17821 24 EVHDRHKPHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYSE------GKVVE------ 86 (194)
Q Consensus 24 ~~~~~~g~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~g------~si~g------ 86 (194)
.++|+.|+|+||||.+.+ ||++||+.+ +|+++.|||++|+|||||+. .+.++
T Consensus 32 ~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Ydg~~FhRvi~~f~iQgG~~~~~~~~~~~~~~~~~e 100 (190)
T PRK10903 32 LLTTSAGNIELELNSQKAPVSVKNFVDYVNSG-----------FYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNE 100 (190)
T ss_pred EEEeccccEEEEEeCCCCcHHHHHHHHHHhcC-----------CcCCcEEEEEeCCceEEeCCcCCCCCCCCCCCcccCc
Confidence 467899999999999987 999999988 99999999999999999862 11121
Q ss_pred -----CCCceeecccccC-C---Ccccceee------c-----cceEEEeEEEccHHHHHHhhcCCcCC----CCCCCcc
Q psy17821 87 -----GKHTVYRMSAATA-E---EKDEWIKC------L-----RVHVVFGHVVSGQNVVSHIENLPVDK----MSRPLQD 142 (194)
Q Consensus 87 -----~~~~g~l~man~g-~---~sqf~i~l------~-----g~~vvFG~V~~G~dvv~~I~~~~~~~----~~~P~~~ 142 (194)
|+.+|.|+|||.+ + +|||||++ | ++|||||+|++|||||++|+++++++ .++|..+
T Consensus 101 ~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~ 180 (190)
T PRK10903 101 ADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKP 180 (190)
T ss_pred ccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCC
Confidence 6789999999865 4 89999984 4 38999999999999999999999976 5799999
Q ss_pred eEEEEEeee
Q psy17821 143 VRVVKCNEL 151 (194)
Q Consensus 143 i~I~~~g~~ 151 (194)
|+|.+|.++
T Consensus 181 v~I~~~~v~ 189 (190)
T PRK10903 181 VVILSAKVL 189 (190)
T ss_pred eEEEEEEEe
Confidence 999999875
No 21
>KOG0884|consensus
Probab=99.96 E-value=9e-30 Score=190.98 Aligned_cols=118 Identities=21% Similarity=0.280 Sum_probs=110.2
Q ss_pred ccccCccEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCccccCceeeec--------Cccccc-----
Q psy17821 25 VHDRHKPHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYS--------EGKVVE----- 86 (194)
Q Consensus 25 ~~~~~g~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~--------g~si~g----- 86 (194)
..+..|+|.||+|.+.+ ||+.||... ||+++.|||-+|+|++|++ |.||||
T Consensus 5 lht~~gdikiev~~e~tpktce~~l~~~~~~-----------~~n~~~~~~~~~~f~v~~~~~~~tgrgg~siwg~~fed 73 (161)
T KOG0884|consen 5 LHTDVGDIKIEVFCERTPKTCENFLALCASD-----------YYNGCIFHRNIKGFMVQTGDPTHTGRGGNSIWGKKFED 73 (161)
T ss_pred EeeccCcEEEEEEecCChhHHHHHHHHhhhh-----------hccceeecCCCCCcEEEeCCCCCCCCCCccccCCcchH
Confidence 46678999999998876 999999998 9999999999999999995 789998
Q ss_pred -------CCCceeecccccCC---Cccccee------eccceEEEeEEEccHHHHHHhhcCCcCCC-CCCCcceEEEEEe
Q psy17821 87 -------GKHTVYRMSAATAE---EKDEWIK------CLRVHVVFGHVVSGQNVVSHIENLPVDKM-SRPLQDVRVVKCN 149 (194)
Q Consensus 87 -------~~~~g~l~man~g~---~sqf~i~------l~g~~vvFG~V~~G~dvv~~I~~~~~~~~-~~P~~~i~I~~~g 149 (194)
|+.+|++||||+|| +|||||+ ||.+|+|||+|++|+|.|+.|+++++++. .||+.++.|.+..
T Consensus 74 e~~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~it 153 (161)
T KOG0884|consen 74 EYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDIT 153 (161)
T ss_pred HHHHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeE
Confidence 89999999999999 8999999 78899999999999999999999999875 8999999999998
Q ss_pred eecC
Q psy17821 150 ELNN 153 (194)
Q Consensus 150 ~~~~ 153 (194)
+..+
T Consensus 154 ihan 157 (161)
T KOG0884|consen 154 IHAN 157 (161)
T ss_pred EecC
Confidence 8877
No 22
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=99.96 E-value=6.3e-29 Score=196.14 Aligned_cols=112 Identities=19% Similarity=0.159 Sum_probs=96.0
Q ss_pred ccccCccEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCccccCceeeecC------ccccc-------
Q psy17821 25 VHDRHKPHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYSE------GKVVE------- 86 (194)
Q Consensus 25 ~~~~~g~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~g------~si~g------- 86 (194)
++|+.|+|+||||.+.+ ||++||+.+ +|+++.|||++|+||+|++. ...++
T Consensus 2 l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~~~~~~~~~~e~ 70 (155)
T cd01920 2 FQTSLGDIVVELYDDKAPITVENFLAYVRKG-----------FYDNTIFHRVISGFVIQGGGFTPDLAQKETLKPIKNEA 70 (155)
T ss_pred cEecceeEEEEEeCCCCcHHHHHHHHHHhcC-----------CCCCCEEEEEeCCcEEEeCCCCCCCCccccCCcccCcc
Confidence 45789999999999887 999999988 99999999999999999962 11111
Q ss_pred ----CCCceeecccccC-C---Ccccceee------c-----cceEEEeEEEccHHHHHHhhcCCcCCC----CCCCcce
Q psy17821 87 ----GKHTVYRMSAATA-E---EKDEWIKC------L-----RVHVVFGHVVSGQNVVSHIENLPVDKM----SRPLQDV 143 (194)
Q Consensus 87 ----~~~~g~l~man~g-~---~sqf~i~l------~-----g~~vvFG~V~~G~dvv~~I~~~~~~~~----~~P~~~i 143 (194)
|+.+|+++||+.+ + +|||||++ + ++|||||+|++|||||++|++++++.. ++|..+|
T Consensus 71 ~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v 150 (155)
T cd01920 71 GNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDV 150 (155)
T ss_pred cccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCe
Confidence 6789999999865 4 89999984 4 379999999999999999999999764 6999999
Q ss_pred EEEE
Q psy17821 144 RVVK 147 (194)
Q Consensus 144 ~I~~ 147 (194)
+|.+
T Consensus 151 ~i~~ 154 (155)
T cd01920 151 IIES 154 (155)
T ss_pred EEEE
Confidence 8875
No 23
>KOG0415|consensus
Probab=99.96 E-value=3.1e-29 Score=216.14 Aligned_cols=122 Identities=20% Similarity=0.283 Sum_probs=114.0
Q ss_pred EeccccCccEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCccccCceeeec--------Cccccc---
Q psy17821 23 REVHDRHKPHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYS--------EGKVVE--- 86 (194)
Q Consensus 23 ~~~~~~~g~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~--------g~si~g--- 86 (194)
++++|+.|+++|.||.+.+ ||+|||+.. ||++|.||-|.++|.+|.| |.|||+
T Consensus 3 VlieTtlGDlvIDLf~~erP~~clNFLKLCk~K-----------YYN~clfh~vq~~f~aQTGDPtGtG~GG~si~~~ly 71 (479)
T KOG0415|consen 3 VLIETTLGDLVIDLFVKERPRTCLNFLKLCKIK-----------YYNFCLFHTVQRDFTAQTGDPTGTGDGGESIYGVLY 71 (479)
T ss_pred EEEEeecccEEeeeecccCcHHHHHHHHHHhHh-----------hcccceeeeccccceeecCCCCCCCCCcceeeeecc
Confidence 4678999999999998776 999999999 9999999999999999985 678886
Q ss_pred ----------------CCCceeecccccCC---Cccccee-------eccceEEEeEEEccHHHHHHhhcCCcCCCCCCC
Q psy17821 87 ----------------GKHTVYRMSAATAE---EKDEWIK-------CLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPL 140 (194)
Q Consensus 87 ----------------~~~~g~l~man~g~---~sqf~i~-------l~g~~vvFG~V~~G~dvv~~I~~~~~~~~~~P~ 140 (194)
|+..|++||+++|. ||||||| |||+|+|||||++|+|+|.+|+..-+|++++|.
T Consensus 72 G~q~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPy 151 (479)
T KOG0415|consen 72 GEQARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPY 151 (479)
T ss_pred cccchhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcc
Confidence 89999999999997 9999999 589999999999999999999999999999999
Q ss_pred cceEEEEEeeecCcC
Q psy17821 141 QDVRVVKCNELNNLL 155 (194)
Q Consensus 141 ~~i~I~~~g~~~~~l 155 (194)
++|+|.+.-++.+++
T Consensus 152 kdIRI~HTiiLdDPF 166 (479)
T KOG0415|consen 152 KDIRIKHTIILDDPF 166 (479)
T ss_pred cceeeeeeEEecCCC
Confidence 999999999998844
No 24
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=99.94 E-value=5.3e-27 Score=182.31 Aligned_cols=111 Identities=21% Similarity=0.248 Sum_probs=98.7
Q ss_pred ccccCccEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCccccCceeeecC-----c--cccc------
Q psy17821 25 VHDRHKPHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYSE-----G--KVVE------ 86 (194)
Q Consensus 25 ~~~~~g~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~g-----~--si~g------ 86 (194)
+.++.|+|+||||.+.+ ||++||+.+ +|+++.|||+++++++|++. . +.++
T Consensus 2 ~~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~-----------~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~E 70 (146)
T cd00317 2 LDTTKGRIVIELYGDEAPKTVENFLSLARGG-----------FYDGTTFHRVIPGFMIQGGDPTGTGGGGSGPGYKFPDE 70 (146)
T ss_pred eEeccCcEEEEEcCCCChHHHHHHHHHHhcC-----------CcCCCEEEEEeCCCeEEECCCCCCCCCCCcCCCccCCc
Confidence 45678999999999877 999999999 99999999999999999971 1 1222
Q ss_pred ------CCCceeecccccCC---Ccccceee------ccceEEEeEEEccHHHHHHhhcCCcCCCCCCCcceEEE
Q psy17821 87 ------GKHTVYRMSAATAE---EKDEWIKC------LRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVV 146 (194)
Q Consensus 87 ------~~~~g~l~man~g~---~sqf~i~l------~g~~vvFG~V~~G~dvv~~I~~~~~~~~~~P~~~i~I~ 146 (194)
|+.+|+++|++.++ +|||||+| |++|+|||+|++||++|++|++.+++++++|.++|+|.
T Consensus 71 ~~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~ 145 (146)
T cd00317 71 NFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTIS 145 (146)
T ss_pred cccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEe
Confidence 67889999999886 78999994 78999999999999999999999999899999999986
No 25
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=99.93 E-value=8.3e-26 Score=177.06 Aligned_cols=113 Identities=22% Similarity=0.313 Sum_probs=98.4
Q ss_pred cccc-CccEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCccccCceeeecC---c------------c
Q psy17821 25 VHDR-HKPHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYSE---G------------K 83 (194)
Q Consensus 25 ~~~~-~g~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~g---~------------s 83 (194)
+.++ .|+|+||||.+.+ ||++||+.+ +|+++.|||++|+++||++. . +
T Consensus 4 i~t~~~G~i~ieL~~~~aP~~~~nF~~l~~~~-----------~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~ 72 (155)
T PF00160_consen 4 IETSGLGRIVIELFGDEAPKTVENFLRLCTSG-----------FYDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEP 72 (155)
T ss_dssp EEETTEEEEEEEEETTTSHHHHHHHHHHHHTT-----------SSTTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSC
T ss_pred EEeCCccCEEEEEeCCCCcHHHHhhehhhccc-----------ccCCceeecccccceeeeeeccCCCCcccccccCccc
Confidence 4454 8999999999987 999999988 99999999999999999862 1 1
Q ss_pred cc-------cCCCceeecccccC--C---Ccccceee------ccceEEEeEEEccHHHHHHhhcCCcCCCCCCCcceEE
Q psy17821 84 VV-------EGKHTVYRMSAATA--E---EKDEWIKC------LRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRV 145 (194)
Q Consensus 84 i~-------g~~~~g~l~man~g--~---~sqf~i~l------~g~~vvFG~V~~G~dvv~~I~~~~~~~~~~P~~~i~I 145 (194)
+- -++.+|+++|++.+ + +|||||+| |++|+|||+|++||++|++|++++++. +|.++|+|
T Consensus 73 ~~~E~~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~~~v~I 150 (155)
T PF00160_consen 73 IPDEFNPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPKQDVTI 150 (155)
T ss_dssp BSSSGBTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBSSTEEE
T ss_pred cccccccccccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccCCCeEE
Confidence 10 13589999999876 2 89999995 789999999999999999999999875 99999999
Q ss_pred EEEee
Q psy17821 146 VKCNE 150 (194)
Q Consensus 146 ~~~g~ 150 (194)
.+||+
T Consensus 151 ~~cgv 155 (155)
T PF00160_consen 151 SSCGV 155 (155)
T ss_dssp EEEEE
T ss_pred EEeEC
Confidence 99986
No 26
>KOG0865|consensus
Probab=99.91 E-value=6.5e-25 Score=174.54 Aligned_cols=121 Identities=18% Similarity=0.220 Sum_probs=106.4
Q ss_pred eEeccccCccEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCc---cccCceeeec---------Cccc
Q psy17821 22 VREVHDRHKPHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATA---EEKDEWIKYS---------EGKV 84 (194)
Q Consensus 22 v~~~~~~~g~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~r---v~~~~~iqg~---------g~si 84 (194)
+....++.|++.|+||.+.. ||.+||+++ +...|++++||| .+++||+||+ +.||
T Consensus 10 ~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tge--------kg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSi 81 (167)
T KOG0865|consen 10 IAIDGEPLGRIVFELFADKIPKTAENFRALCTGE--------KGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSI 81 (167)
T ss_pred eeecCccccccceecccccCcchHhhhhhcccCC--------CccccccchhhhccccccceeeccCcccccCCccceEe
Confidence 34457889999999998876 999999976 444699999999 4457999974 7899
Q ss_pred cc-----------CCCceeecccccCC---Cccccee------eccceEEEeEEEccHHHHHHhhcCCcCCCCCCCcceE
Q psy17821 85 VE-----------GKHTVYRMSAATAE---EKDEWIK------CLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVR 144 (194)
Q Consensus 85 ~g-----------~~~~g~l~man~g~---~sqf~i~------l~g~~vvFG~V~~G~dvv~~I~~~~~~~~~~P~~~i~ 144 (194)
|+ |..||+|||||+|| +|||||+ |||+|||||+|.+||+++++|+.... .+++|..+|.
T Consensus 82 y~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs-~~gk~~~~i~ 160 (167)
T KOG0865|consen 82 YGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGS-RNGKTSKKIT 160 (167)
T ss_pred cccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCC-cCCcccccEE
Confidence 97 88999999999998 8999998 68999999999999999999999886 5899999999
Q ss_pred EEEEeee
Q psy17821 145 VVKCNEL 151 (194)
Q Consensus 145 I~~~g~~ 151 (194)
|.+||.+
T Consensus 161 i~dcg~l 167 (167)
T KOG0865|consen 161 IADCGQL 167 (167)
T ss_pred EecCCcC
Confidence 9999864
No 27
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=99.91 E-value=9.2e-25 Score=175.80 Aligned_cols=95 Identities=13% Similarity=0.020 Sum_probs=81.8
Q ss_pred cccCccEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCccccCceeeecC-------------------
Q psy17821 26 HDRHKPHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYSE------------------- 81 (194)
Q Consensus 26 ~~~~g~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~g------------------- 81 (194)
.|+.|+|+||||.+.+ ||++||+.+ +|+++.|||++++||||++.
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~ 71 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERG-----------FYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTI 71 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhC-----------CcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccc
Confidence 3578999999999887 999999988 99999999999999999961
Q ss_pred ----------ccccc----------------CCCceeecccccC--C---Ccccceee-------------ccceEEEeE
Q psy17821 82 ----------GKVVE----------------GKHTVYRMSAATA--E---EKDEWIKC-------------LRVHVVFGH 117 (194)
Q Consensus 82 ----------~si~g----------------~~~~g~l~man~g--~---~sqf~i~l-------------~g~~vvFG~ 117 (194)
.++|+ |+.+|+++||+.+ + +|||||++ |++|+|||+
T Consensus 72 p~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~ 151 (176)
T cd01924 72 PLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGY 151 (176)
T ss_pred cceecccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEE
Confidence 02331 6788999999877 3 89999975 469999999
Q ss_pred EEccHHHHHHhhcC
Q psy17821 118 VVSGQNVVSHIENL 131 (194)
Q Consensus 118 V~~G~dvv~~I~~~ 131 (194)
|++|||||++|+..
T Consensus 152 VveG~dvl~~I~~g 165 (176)
T cd01924 152 VTDGLDILRELKVG 165 (176)
T ss_pred EecCHHHHHhhcCC
Confidence 99999999999653
No 28
>KOG0885|consensus
Probab=99.90 E-value=2.3e-24 Score=186.97 Aligned_cols=132 Identities=15% Similarity=0.149 Sum_probs=118.3
Q ss_pred eccccCccEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCccccCceeeec--------Cccccc----
Q psy17821 24 EVHDRHKPHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYS--------EGKVVE---- 86 (194)
Q Consensus 24 ~~~~~~g~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~--------g~si~g---- 86 (194)
++.|..|+|-||||+..| ||++||-.+ ||+++.|||++|+|.+||+ |.||||
T Consensus 16 il~TT~G~I~iELW~kE~P~acrnFiqKOGeg-----------yy~nt~fhrlvp~f~~Qggdp~~~gtGgesiyg~~fa 84 (439)
T KOG0885|consen 16 ILKTTKGDIDIELWAKECPKACRNFIQLCLEG-----------YYDNTEFHRLVPGFLVQGGDPTGTGTGGESIYGRPFA 84 (439)
T ss_pred EEEeccCceeeeehhhhhhHHHHHHHHHHHhc-----------cccCceeeeeccchhcccCCCCCCCCCccccccccch
Confidence 356778999999999887 999999999 9999999999999999995 789998
Q ss_pred --------CCCceeecccccCC---Ccccceee------ccceEEEeEEEc-cHHHHHHhhcCCcCCCCCCCcceEEEEE
Q psy17821 87 --------GKHTVYRMSAATAE---EKDEWIKC------LRVHVVFGHVVS-GQNVVSHIENLPVDKMSRPLQDVRVVKC 148 (194)
Q Consensus 87 --------~~~~g~l~man~g~---~sqf~i~l------~g~~vvFG~V~~-G~dvv~~I~~~~~~~~~~P~~~i~I~~~ 148 (194)
..+.|+++|||++. |||||+|| +++|++||+|+- -.-.+.+|..+.++.++||+.+-+|.+|
T Consensus 85 dE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~ 164 (439)
T KOG0885|consen 85 DEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSV 164 (439)
T ss_pred hhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCccceeee
Confidence 57799999999986 89999995 789999999995 5778999999999999999999999999
Q ss_pred eeecCcCCCCchhhhhhcccc
Q psy17821 149 NELNNLLEPTEMGVAQFLYKG 169 (194)
Q Consensus 149 g~~~~~l~p~~e~va~~L~~~ 169 (194)
.++.+ ||.+-+|.-+.+.
T Consensus 165 EV~~n---pFdDI~pr~~r~~ 182 (439)
T KOG0885|consen 165 EVLIN---PFDDIKPRELRKE 182 (439)
T ss_pred EeecC---chhhcchhhhhcc
Confidence 99998 8888888766443
No 29
>KOG0930|consensus
Probab=99.36 E-value=1.1e-13 Score=117.32 Aligned_cols=91 Identities=55% Similarity=0.976 Sum_probs=81.6
Q ss_pred CCCCCCeeeeecCCceeEeccccCccEEEEEcCCcc--chhhhcccCCCCeeecCcceeeecCccCccccCceeeecCcc
Q psy17821 6 DRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGF--EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYSEGK 83 (194)
Q Consensus 6 ~~~~~p~G~i~l~~~~v~~~~~~~g~i~feL~~~~~--NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~g~s 83 (194)
++|++|+|||||+|++++.+++|++++|||||.--. .-||.||.+..|.+|+|+|..|+.|+-+...++.||.++..+
T Consensus 295 tTDKEPrGIIpLeNlsir~VedP~kP~cfEly~ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~ 374 (395)
T KOG0930|consen 295 TTDKEPRGIIPLENLSIREVEDPKKPNCFELYIPSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAA 374 (395)
T ss_pred ccCCCCCcceeccccceeeccCCCCCCeEEEecCCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999996554 899999999999999999999999999999999999998877
Q ss_pred cccCCCceeeccccc
Q psy17821 84 VVEGKHTVYRMSAAT 98 (194)
Q Consensus 84 i~g~~~~g~l~man~ 98 (194)
| ...|.+-.+|..
T Consensus 375 i--s~~Pfy~mla~r 387 (395)
T KOG0930|consen 375 I--SRDPFYEMLAAR 387 (395)
T ss_pred h--ccCcHHHHHhcc
Confidence 7 556666555543
No 30
>KOG0930|consensus
Probab=99.08 E-value=9.8e-12 Score=105.63 Aligned_cols=71 Identities=48% Similarity=0.697 Sum_probs=54.1
Q ss_pred HHHHHhhcCCcCCCCCCCcceEEEEEe---------------eecCcCCCCchhhhhhcccccCCcccccccccCccccc
Q psy17821 123 NVVSHIENLPVDKMSRPLQDVRVVKCN---------------ELNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDF 187 (194)
Q Consensus 123 dvv~~I~~~~~~~~~~P~~~i~I~~~g---------------~~~~~l~p~~e~va~~L~~~e~l~k~~igd~~~e~~~~ 187 (194)
+|...|..+...+..+..+.-+++..| +.++++++.|+++|.|||+||||+|++|||||||++||
T Consensus 42 ev~~eid~~~~~e~skt~q~~k~~~~GRKKFNmDP~Kgiq~l~e~~ll~~dpq~iA~flykGEGLnKtaIG~yLGer~~~ 121 (395)
T KOG0930|consen 42 EVMEEIDNLESTEESKTKQRNKQVAMGRKKFNMDPKKGIQFLIENDLLQNDPEDIARFLYKGEGLNKTAIGDYLGERDEF 121 (395)
T ss_pred HHHHHhhhhccccchhhHHHhHHHhhchhhcCCChHHHhHHHHHcccccCCHHHHHHHHHhcCCcchhhHhhhhccCchh
Confidence 355555555544434444444444433 45788999999999999999999999999999999999
Q ss_pred cccccC
Q psy17821 188 NEKVRG 193 (194)
Q Consensus 188 ~~~~~~ 193 (194)
||+||.
T Consensus 122 nl~vL~ 127 (395)
T KOG0930|consen 122 NLQVLH 127 (395)
T ss_pred HHHHHH
Confidence 999985
No 31
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.59 E-value=7e-05 Score=54.85 Aligned_cols=37 Identities=27% Similarity=0.606 Sum_probs=33.3
Q ss_pred CCCCCCCCeeeeecCCceeEeccc--cCccEEEEEcCCc
Q psy17821 4 GDDRQVEPRGIIPLENIQVREVHD--RHKPHCFELFTSG 40 (194)
Q Consensus 4 ~~~~~~~p~G~i~l~~~~v~~~~~--~~g~i~feL~~~~ 40 (194)
+|+++++|+|+|||+|+.++.+++ ++++.+|+||...
T Consensus 35 kd~eeKE~kyilpLdnLk~Rdve~gf~sk~~~FeLfnpd 73 (110)
T cd01256 35 KDDEEKEKKYMLPLDGLKLRDIEGGFMSRNHKFALFYPD 73 (110)
T ss_pred cccccccccceeeccccEEEeecccccCCCcEEEEEcCc
Confidence 578899999999999999999998 7899999999543
No 32
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.44 E-value=7.5e-05 Score=54.72 Aligned_cols=58 Identities=31% Similarity=0.660 Sum_probs=46.7
Q ss_pred CCCCCCCCeeeeecCCceeEecccc--CccEEEEEcCCccchhhhcccCCCCeeecCcceeeecCccCccccCceeeec
Q psy17821 4 GDDRQVEPRGIIPLENIQVREVHDR--HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYS 80 (194)
Q Consensus 4 ~~~~~~~p~G~i~l~~~~v~~~~~~--~g~i~feL~~~~~NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~ 80 (194)
+++.+.+|+|+|+|+++.|+.++++ .++.+|||+... .|..|..|+-. .+++.||+.+
T Consensus 36 ~~~~~~~p~gli~l~~~~V~~v~ds~~~r~~cFel~~~~------------------~~~~y~~~a~~-~er~~Wi~~l 95 (98)
T cd01245 36 SSPKKTKPIGLIDLSDAYLYPVHDSLFGRPNCFQIVERA------------------LPTVYYSCRSS-EERDKWIESL 95 (98)
T ss_pred cCCCCCCccceeeccccEEEEccccccCCCeEEEEecCC------------------CCeEEEEeCCH-HHHHHHHHHH
Confidence 3567889999999999999999887 678999998554 12368777777 8888898754
No 33
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.36 E-value=0.00011 Score=55.58 Aligned_cols=80 Identities=59% Similarity=0.998 Sum_probs=66.5
Q ss_pred CCCCCCCeeeeecCCceeEeccccCccEEEEEcCCcc-chhhhcccCCCCeeecCcceeeecCccCccccCceeeecCcc
Q psy17821 5 DDRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGF-EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYSEGK 83 (194)
Q Consensus 5 ~~~~~~p~G~i~l~~~~v~~~~~~~g~i~feL~~~~~-NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~g~s 83 (194)
++.+.+|+|.|||.++.|.....+.++.+|+|+...- +.++.|+..+.|.++.+.+..|..++-+......|++++...
T Consensus 33 ~~~~~~~~g~I~L~~~~v~~~~~~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~ 112 (125)
T cd01252 33 YTTDKEPRGIIPLENVSIREVEDPSKPFCFELFSPSDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKAS 112 (125)
T ss_pred CCCCCCceEEEECCCcEEEEcccCCCCeeEEEECCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHH
Confidence 4567899999999999988887777889999996543 788889887788888888888888888888889999988655
Q ss_pred c
Q psy17821 84 V 84 (194)
Q Consensus 84 i 84 (194)
+
T Consensus 113 ~ 113 (125)
T cd01252 113 I 113 (125)
T ss_pred H
Confidence 5
No 34
>KOG0929|consensus
Probab=97.02 E-value=0.00012 Score=74.37 Aligned_cols=54 Identities=35% Similarity=0.653 Sum_probs=46.9
Q ss_pred CCCCCcceEEEEEeeecCcCCCCchhhhhhcccccCCcccccccccCcccccccccc
Q psy17821 136 MSRPLQDVRVVKCNELNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKVR 192 (194)
Q Consensus 136 ~~~P~~~i~I~~~g~~~~~l~p~~e~va~~L~~~e~l~k~~igd~~~e~~~~~~~~~ 192 (194)
+++|.+.|........ ++++|.++++||...++|.|+++||||||++|+|++||
T Consensus 526 N~kpkkgi~~l~s~~~---v~~sp~eiaeFL~~t~~l~kt~igdyLGe~d~~~~~VM 579 (1514)
T KOG0929|consen 526 NGKPKKGISFLDSKGT---VGTSPLEIAEFLIGTEGLSKTILGDYLGEDDDFNKAVM 579 (1514)
T ss_pred ccCCccCchhhhhcCC---CCCCHHHHHHHHHhccCCCHHHHHHHhcCCcchhHHHH
Confidence 5788888877665444 44799999999999999999999999999999999997
No 35
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=96.01 E-value=0.0014 Score=68.50 Aligned_cols=41 Identities=49% Similarity=0.695 Sum_probs=37.4
Q ss_pred CcCCCCchhhhhhcccccCCcccccccccCccccccccccC
Q psy17821 153 NLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKVRG 193 (194)
Q Consensus 153 ~~l~p~~e~va~~L~~~e~l~k~~igd~~~e~~~~~~~~~~ 193 (194)
.++...|+++|+||...++|+|++||||||+++++|++||.
T Consensus 642 ~~i~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~ 682 (1780)
T PLN03076 642 NKVGESPEEIAAFLKDASGLNKTLIGDYLGEREDLSLKVMH 682 (1780)
T ss_pred CCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHH
Confidence 45567899999999999999999999999999999999873
No 36
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=95.44 E-value=0.0027 Score=51.52 Aligned_cols=36 Identities=58% Similarity=0.854 Sum_probs=34.0
Q ss_pred CCchhhhhhcccccCCcccccccccCcccccccccc
Q psy17821 157 PTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKVR 192 (194)
Q Consensus 157 p~~e~va~~L~~~e~l~k~~igd~~~e~~~~~~~~~ 192 (194)
+.|.++|+||.+.++++|.++|+|||..+++|.+||
T Consensus 33 ~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~vL 68 (187)
T smart00222 33 DDPQDVADFLSKNEGLNKKAIGDYLGEHDEFNRLVL 68 (187)
T ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHH
Confidence 679999999999999999999999999889999887
No 37
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=95.12 E-value=0.0036 Score=50.72 Aligned_cols=37 Identities=51% Similarity=0.900 Sum_probs=34.5
Q ss_pred CCCchhhhhhcccccCCcccccccccCcccccccccc
Q psy17821 156 EPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKVR 192 (194)
Q Consensus 156 ~p~~e~va~~L~~~e~l~k~~igd~~~e~~~~~~~~~ 192 (194)
.+.+.++|+||...++|+|.++|+|||..+++|.+||
T Consensus 31 ~~~~~~iA~fl~~~~~l~k~~ig~~L~~~~~~~~~vL 67 (185)
T cd00171 31 DDSPKEIAKFLYETEGLNKKAIGEYLGENNEFNSLVL 67 (185)
T ss_pred CCCHHHHHHHHHhCCCCCHHHHHHHHcCCchHHHHHH
Confidence 4679999999999999999999999999999998887
No 38
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=94.56 E-value=0.0042 Score=50.44 Aligned_cols=37 Identities=41% Similarity=0.776 Sum_probs=33.1
Q ss_pred CCCchhhhhhcccccCCcccccccccCcccccccccc
Q psy17821 156 EPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKVR 192 (194)
Q Consensus 156 ~p~~e~va~~L~~~e~l~k~~igd~~~e~~~~~~~~~ 192 (194)
.+.|..+|+||...++|+|.++|+|||..+++|.+||
T Consensus 35 ~~~~~~iA~fL~~~~~l~k~~ige~Lg~~~~~n~~vL 71 (190)
T PF01369_consen 35 EDDPKSIAKFLFQTPGLDKKKIGEYLGKDNPFNRDVL 71 (190)
T ss_dssp -SSHHHHHHHHHHTTTS-HHHHHHHHTSSSHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCCCHHHHHHHHhccchHHHHHH
Confidence 5789999999999999999999999999999999887
No 39
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=93.98 E-value=0.031 Score=40.55 Aligned_cols=60 Identities=23% Similarity=0.387 Sum_probs=42.8
Q ss_pred CCCCCCCeeeeecCCceeEecccc----CccEEEEEcCCccchhhhcccCCCCeeecCcceeeecCccCccccCceeeec
Q psy17821 5 DDRQVEPRGIIPLENIQVREVHDR----HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYS 80 (194)
Q Consensus 5 ~~~~~~p~G~i~l~~~~v~~~~~~----~g~i~feL~~~~~NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~ 80 (194)
++.+.+|.|.|+|.++.|...++. .++.+|++.+.. . .|-.++-...+...||+++
T Consensus 35 ~~~~~~~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~~---------r-----------t~~~~A~s~~e~~~Wi~ai 94 (100)
T cd01233 35 SDKDPVERGVINLSTARVEHSEDQAAMVKGPNTFAVCTKH---------R-----------GYLFQALSDKEMIDWLYAL 94 (100)
T ss_pred cCCCccEeeEEEecccEEEEccchhhhcCCCcEEEEECCC---------C-----------EEEEEcCCHHHHHHHHHHh
Confidence 456789999999999888766543 245788885332 0 5666677777888888887
Q ss_pred Cccc
Q psy17821 81 EGKV 84 (194)
Q Consensus 81 g~si 84 (194)
..|+
T Consensus 95 ~~~~ 98 (100)
T cd01233 95 NPLY 98 (100)
T ss_pred hhhh
Confidence 6554
No 40
>KOG0882|consensus
Probab=93.79 E-value=0.16 Score=46.48 Aligned_cols=117 Identities=13% Similarity=0.105 Sum_probs=83.3
Q ss_pred cccCc----cEEEEEcCCcc-----chhhhcccCCCCeeecCcceeeecCccCccccCceeeecCc--cc--------cc
Q psy17821 26 HDRHK----PHCFELFTSGF-----EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYSEG--KV--------VE 86 (194)
Q Consensus 26 ~~~~g----~i~feL~~~~~-----NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~g~--si--------~g 86 (194)
.++.| .+.++++.+.. .|..+|... +++.-.|.||...+++|.+.. |+ |.
T Consensus 104 v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~-----------~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs 172 (558)
T KOG0882|consen 104 VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDG-----------YFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWS 172 (558)
T ss_pred ecCCCCeeeeEEeecccCCCcEEECCcCCcCccc-----------eecccccCceEEEEeeccccceeeccccceeEeec
Confidence 34555 68888887765 677788766 899999999999999998521 11 00
Q ss_pred ----------------CCCceeecccccC--C-------CcccceeeccceEEEeEEEccHHHHHHhhcCCcCCCCCCCc
Q psy17821 87 ----------------GKHTVYRMSAATA--E-------EKDEWIKCLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQ 141 (194)
Q Consensus 87 ----------------~~~~g~l~man~g--~-------~sqf~i~l~g~~vvFG~V~~G~dvv~~I~~~~~~~~~~P~~ 141 (194)
.+...+....... + .+.+|=|++.+..|||.+..+-++++.|+...++....|..
T Consensus 173 ~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks 252 (558)
T KOG0882|consen 173 AEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKS 252 (558)
T ss_pred CCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccc
Confidence 1112222222221 1 22334446779999999999999999999999999999999
Q ss_pred ceEEEEEeeecC
Q psy17821 142 DVRVVKCNELNN 153 (194)
Q Consensus 142 ~i~I~~~g~~~~ 153 (194)
++.|.+...-++
T Consensus 253 ~y~l~~VelgRR 264 (558)
T KOG0882|consen 253 PYGLMHVELGRR 264 (558)
T ss_pred ccccceeehhhh
Confidence 999988765554
No 41
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=93.03 E-value=0.035 Score=40.54 Aligned_cols=56 Identities=25% Similarity=0.525 Sum_probs=43.3
Q ss_pred CCCeeeeecCCceeEecccc-CccEEEEEcCCccchhhhcccCCCCeeecCcceeeecCccCccccCceeeecCccc
Q psy17821 9 VEPRGIIPLENIQVREVHDR-HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYSEGKV 84 (194)
Q Consensus 9 ~~p~G~i~l~~~~v~~~~~~-~g~i~feL~~~~~NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~g~si 84 (194)
-.++|+|||+++.|+..++. ..+.+|+|++... +|.-++-+..++..|++.+..+|
T Consensus 41 y~~~~~i~L~~~~V~~~~~~~~~~~~F~I~~~~k--------------------s~~l~A~s~~Ek~~Wi~~i~~aI 97 (99)
T cd01220 41 FRILGHLPLRGMLTEESEHEWGVPHCFTIFGGQC--------------------AITVAASTRAEKEKWLADLSKAI 97 (99)
T ss_pred EEEEEEEEcCceEEeeccCCcCCceeEEEEcCCe--------------------EEEEECCCHHHHHHHHHHHHHHh
Confidence 36899999999999988773 5568999996541 67777778888888888765544
No 42
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.44 E-value=0.073 Score=38.26 Aligned_cols=56 Identities=16% Similarity=0.326 Sum_probs=38.2
Q ss_pred CCCCCCCCeeeeecCCceeEeccccCccEEEEEcCCccchhhhcccCCCCeeecCcceeeecCccCccccCceeeec
Q psy17821 4 GDDRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYS 80 (194)
Q Consensus 4 ~~~~~~~p~G~i~l~~~~v~~~~~~~g~i~feL~~~~~NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~ 80 (194)
+++.+..|+|.|+|.++.+....+. .+..|+|.+.. ..|...+-+...+..||+++
T Consensus 35 k~~~d~~p~G~I~L~~~~~~~~~~~-~~~~F~i~t~~--------------------r~y~l~A~s~~e~~~Wi~al 90 (95)
T cd01265 35 KDSQDAKPLGRVDLSGAAFTYDPRE-EKGRFEIHSNN--------------------EVIALKASSDKQMNYWLQAL 90 (95)
T ss_pred CCCCcccccceEECCccEEEcCCCC-CCCEEEEEcCC--------------------cEEEEECCCHHHHHHHHHHH
Confidence 4567889999999999777554332 35677776432 05666777777777777654
No 43
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=89.88 E-value=0.59 Score=33.11 Aligned_cols=36 Identities=14% Similarity=0.312 Sum_probs=29.6
Q ss_pred CCCCCCCCeeeeecCCceeEeccccCccEEEEEcCC
Q psy17821 4 GDDRQVEPRGIIPLENIQVREVHDRHKPHCFELFTS 39 (194)
Q Consensus 4 ~~~~~~~p~G~i~l~~~~v~~~~~~~g~i~feL~~~ 39 (194)
+++.+.+|.|.|||.+..|....+..++.+|.|...
T Consensus 36 k~~~~~~~~~~I~L~~~~v~~~~~~~k~~~F~I~~~ 71 (96)
T cd01260 36 RSKQDEKAEGLIFLSGFTIESAKEVKKKYAFKVCHP 71 (96)
T ss_pred CCCCCCccceEEEccCCEEEEchhcCCceEEEECCC
Confidence 456778999999999998887767778899998743
No 44
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=89.27 E-value=0.19 Score=36.99 Aligned_cols=54 Identities=24% Similarity=0.527 Sum_probs=36.3
Q ss_pred CCCCe-eeeecCCceeEeccccCc-----cEEEEEcCCccchhhhcccCCCCeeecCcceeeecCccCccccCceeeecC
Q psy17821 8 QVEPR-GIIPLENIQVREVHDRHK-----PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYSE 81 (194)
Q Consensus 8 ~~~p~-G~i~l~~~~v~~~~~~~g-----~i~feL~~~~~NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~g 81 (194)
+.+|. |+|+|+++..+...+... +.+||+....- .|-..+-....++.|||+++
T Consensus 39 ~~~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~r--------------------t~~l~A~se~e~e~WI~~i~ 98 (101)
T cd01264 39 KDDPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADK--------------------TYILKAKDEKNAEEWLQCLN 98 (101)
T ss_pred ccCCCCceEEcccceEEeeccccccccccCcEEEEEcCCc--------------------eEEEEeCCHHHHHHHHHHHH
Confidence 33455 999999987766543222 48999874330 56666777777888888654
No 45
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=87.11 E-value=0.4 Score=34.06 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=15.9
Q ss_pred CCCCCCCeeeeecCCceeEe
Q psy17821 5 DDRQVEPRGIIPLENIQVRE 24 (194)
Q Consensus 5 ~~~~~~p~G~i~l~~~~v~~ 24 (194)
++.+++|+|.|+|.++....
T Consensus 34 ~~~~~~~~g~I~L~~~~~v~ 53 (101)
T cd01235 34 DFEDTAEKGCIDLAEVKSVN 53 (101)
T ss_pred CCCCCccceEEEcceeEEEe
Confidence 45678999999999976544
No 46
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=84.27 E-value=0.62 Score=34.11 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=23.8
Q ss_pred CCCeeeeecCCceeEe-ccccCccEEEEEcCCc
Q psy17821 9 VEPRGIIPLENIQVRE-VHDRHKPHCFELFTSG 40 (194)
Q Consensus 9 ~~p~G~i~l~~~~v~~-~~~~~g~i~feL~~~~ 40 (194)
..|+|+|+|.++.... ..+..++.+|+|+...
T Consensus 46 ~~p~~vI~L~~c~~v~~~~d~k~~~~f~i~t~d 78 (101)
T cd01257 46 SAPKRVIPLESCFNINKRADAKHRHLIALYTRD 78 (101)
T ss_pred CCceEEEEccceEEEeeccccccCeEEEEEeCC
Confidence 6899999999977644 3345566899998543
No 47
>COG5307 SEC7 domain proteins [General function prediction only]
Probab=81.49 E-value=0.35 Score=48.64 Aligned_cols=55 Identities=27% Similarity=0.422 Sum_probs=44.0
Q ss_pred CCCCCcceEEEEEeeecCcCCCCchhhhhhcccccC-CcccccccccCcccccccccc
Q psy17821 136 MSRPLQDVRVVKCNELNNLLEPTEMGVAQFLYKGEG-LNKTAIGDYLGERHDFNEKVR 192 (194)
Q Consensus 136 ~~~P~~~i~I~~~g~~~~~l~p~~e~va~~L~~~e~-l~k~~igd~~~e~~~~~~~~~ 192 (194)
+.+|.+.+.+..--...+ +.++.+++.||.+.++ +.|..+|+|||++++.|.+||
T Consensus 279 n~kp~~gi~~l~~~~~i~--~d~~~sia~~L~~~~~~l~k~~lg~~L~~~~~kn~~vL 334 (1024)
T COG5307 279 NEKPKKGIASLIDSEFID--SDSHKSIAEILEGTEGRLDKKKLGLYLGTDDDKNNAVL 334 (1024)
T ss_pred hhcCcccchhhcccccCC--cccchHHHHHHHhccCcccHHHHHHHhcCCchhHHHHH
Confidence 456777765554333333 6899999999999999 999999999999999998886
No 48
>KOG0931|consensus
Probab=80.82 E-value=0.43 Score=43.93 Aligned_cols=53 Identities=34% Similarity=0.664 Sum_probs=38.6
Q ss_pred CCCCcceEEEEEeeecCcCCCCchhhhhhcccccCCcccccccccCccc-ccccccc
Q psy17821 137 SRPLQDVRVVKCNELNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERH-DFNEKVR 192 (194)
Q Consensus 137 ~~P~~~i~I~~~g~~~~~l~p~~e~va~~L~~~e~l~k~~igd~~~e~~-~~~~~~~ 192 (194)
-+|.+.|... +-...+.++|..||-||....||.+.|||||||-.. .||--||
T Consensus 210 ~kPekGvQ~L---i~rGFv~dtPvgvAhfllqRkGLSrqMIGEflGn~~kqfnrdVL 263 (627)
T KOG0931|consen 210 KKPEKGVQYL---IERGFVPDTPVGVAHFLLQRKGLSRQMIGEFLGNRQKQFNRDVL 263 (627)
T ss_pred CCcchhhhhh---hhhcccCCCchHHHHHHHhhccchHHHHHHHhccccchhhhHHH
Confidence 4555555432 234566789999999999999999999999999763 4554443
No 49
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=78.25 E-value=1.3 Score=32.32 Aligned_cols=52 Identities=27% Similarity=0.339 Sum_probs=30.9
Q ss_pred CCCeeeeecCCceeEeccccC--------ccEEEEEcCCccchhhhcccCCCCeeecCcceeeecCccCccccCceeeec
Q psy17821 9 VEPRGIIPLENIQVREVHDRH--------KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYS 80 (194)
Q Consensus 9 ~~p~G~i~l~~~~v~~~~~~~--------g~i~feL~~~~~NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~ 80 (194)
..|+|.|||.++.+....... +..+|++.+. ...+|- .+-+..+++.||+++
T Consensus 44 ~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~-------------------~r~~yl-~A~s~~er~~WI~ai 103 (106)
T cd01238 44 GSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHD-------------------EGTLYV-FAPTEELRKRWIKAL 103 (106)
T ss_pred cCcceeEECCcceEEEEecCCcCcccccccCccEEEEeC-------------------CCeEEE-EcCCHHHHHHHHHHH
Confidence 489999999998664432221 2345554422 122443 466777788887754
No 50
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=73.96 E-value=2.5 Score=30.10 Aligned_cols=51 Identities=16% Similarity=0.275 Sum_probs=32.4
Q ss_pred CCCeeeeecCCceeEeccccCccEEEEEcCCccchhhhcccCCCCeeecCcceeeecCccCccccCceeeec
Q psy17821 9 VEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYS 80 (194)
Q Consensus 9 ~~p~G~i~l~~~~v~~~~~~~g~i~feL~~~~~NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~ 80 (194)
..|+|.|+|..+.+... +..+..|++.... . ..|...+-+..++..||+++
T Consensus 38 ~~~~G~I~L~~~~i~~~--~~~~~~F~i~~~~------------------~-r~~~L~A~s~~e~~~Wi~al 88 (91)
T cd01247 38 HGCRGSIFLKKAIIAAH--EFDENRFDISVNE------------------N-VVWYLRAENSQSRLLWMDSV 88 (91)
T ss_pred CCCcEEEECcccEEEcC--CCCCCEEEEEeCC------------------C-eEEEEEeCCHHHHHHHHHHH
Confidence 46899999999877543 3345678775221 0 15666666666667776643
No 51
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=70.83 E-value=2.9 Score=30.44 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=16.5
Q ss_pred CCCCCCCCeeeeecCCceeEe
Q psy17821 4 GDDRQVEPRGIIPLENIQVRE 24 (194)
Q Consensus 4 ~~~~~~~p~G~i~l~~~~v~~ 24 (194)
+++.+++|+|.|+|..+.+..
T Consensus 42 k~~~~~k~~g~I~L~~~~~v~ 62 (108)
T cd01266 42 KTSRKFKLEFVIDLESCSQVD 62 (108)
T ss_pred CCCCCCccceEEECCccEEEc
Confidence 356678999999999976643
No 52
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=70.44 E-value=2.2 Score=30.96 Aligned_cols=58 Identities=21% Similarity=0.263 Sum_probs=35.5
Q ss_pred CCCCCCCCeeeeecCCce----eEec-c---ccCccEEEEEcCCccchhhhcccCCCCeeecCcceeeecCccCccccCc
Q psy17821 4 GDDRQVEPRGIIPLENIQ----VREV-H---DRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDE 75 (194)
Q Consensus 4 ~~~~~~~p~G~i~l~~~~----v~~~-~---~~~g~i~feL~~~~~NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~ 75 (194)
+++.+..|+|.|+|+... |... . ......+|++.+.. ..|..++-+..++..
T Consensus 32 k~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~~--------------------Rty~l~a~s~~e~~~ 91 (103)
T cd01251 32 KDPLDAFAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTPE--------------------RKFLFACETEQDRRE 91 (103)
T ss_pred CCCCCcCcCcEEEeeccccceeEeccCCccccccccceEEEEeCC--------------------eEEEEECCCHHHHHH
Confidence 356678999999998643 3221 0 11111255554221 168888888888888
Q ss_pred eeeecC
Q psy17821 76 WIKYSE 81 (194)
Q Consensus 76 ~iqg~g 81 (194)
||+++.
T Consensus 92 Wi~ai~ 97 (103)
T cd01251 92 WIAAFQ 97 (103)
T ss_pred HHHHHH
Confidence 888654
No 53
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=65.50 E-value=3.5 Score=38.32 Aligned_cols=44 Identities=16% Similarity=0.167 Sum_probs=31.8
Q ss_pred CCCceeecccccCCCc-ccceeec-----cceEEEeEEEccHHHHHHhhc
Q psy17821 87 GKHTVYRMSAATAEEK-DEWIKCL-----RVHVVFGHVVSGQNVVSHIEN 130 (194)
Q Consensus 87 ~~~~g~l~man~g~~s-qf~i~l~-----g~~vvFG~V~~G~dvv~~I~~ 130 (194)
..+.|.+++-|.|.|+ .-||--. -.|+|+|+|+.||++++--+.
T Consensus 254 ~R~rGtVTVRn~G~G~G~VYIYredr~ss~sHtvVG~V~~GiELid~a~~ 303 (503)
T TIGR03268 254 KRRRGAVTVRNSGVGEGRVYIYREDRPSSLSHNVVGHVTRGIELIDIAQE 303 (503)
T ss_pred cccceeEEEEeeccCceeEEEEcCCCCCCcccceeEEEecceeeeecccC
Confidence 3567888888888743 4555522 289999999999998875443
No 54
>PRK00969 hypothetical protein; Provisional
Probab=63.14 E-value=4.2 Score=37.94 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=31.5
Q ss_pred CCCceeecccccCCCc-ccceeec-----cceEEEeEEEccHHHHHHhhc
Q psy17821 87 GKHTVYRMSAATAEEK-DEWIKCL-----RVHVVFGHVVSGQNVVSHIEN 130 (194)
Q Consensus 87 ~~~~g~l~man~g~~s-qf~i~l~-----g~~vvFG~V~~G~dvv~~I~~ 130 (194)
..+.|.+++-|.|.|+ .-||--. -.|+|.|+|+.||++++--+.
T Consensus 257 ~R~~GtVTVRt~G~g~G~vYIyredr~ss~sHtvVG~V~~GiELi~~a~~ 306 (508)
T PRK00969 257 PRRRGTVTVRTAGVGVGKVYIYREDRPSSLSHTVVGRVTHGIELIDFAKE 306 (508)
T ss_pred ccccceEEEEeeccCceeEEEECCCCCCCccceeEEEEecceeeeecccC
Confidence 3556778888887743 4556522 289999999999998875443
No 55
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=58.75 E-value=6.7 Score=28.45 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=19.5
Q ss_pred CCCeeeeecCCceeEecccc---CccEEEEEc
Q psy17821 9 VEPRGIIPLENIQVREVHDR---HKPHCFELF 37 (194)
Q Consensus 9 ~~p~G~i~l~~~~v~~~~~~---~g~i~feL~ 37 (194)
..|+|.|||..+..++.... ....+|++.
T Consensus 41 ~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqiv 72 (98)
T cd01244 41 CKKSALIKLAAIKGTEPLSDKSFVNVDIITIV 72 (98)
T ss_pred CceeeeEEccceEEEEEcCCcccCCCceEEEE
Confidence 59999999999877654322 122566664
No 56
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=56.93 E-value=7.4 Score=28.59 Aligned_cols=31 Identities=10% Similarity=0.142 Sum_probs=20.0
Q ss_pred CCCCCeeeeecCCceeEecccc-C-ccEEEEEc
Q psy17821 7 RQVEPRGIIPLENIQVREVHDR-H-KPHCFELF 37 (194)
Q Consensus 7 ~~~~p~G~i~l~~~~v~~~~~~-~-g~i~feL~ 37 (194)
.+..|+|.|.|+.+..+...+. . ...+|++-
T Consensus 45 ~~~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I~ 77 (104)
T cd01236 45 PTTLPQGTIDMNQCTDVVDAEARTGQKFSICIL 77 (104)
T ss_pred CCcccceEEEccceEEEeecccccCCccEEEEE
Confidence 5679999999988766443321 2 23566655
No 57
>KOG0928|consensus
Probab=52.63 E-value=3.6 Score=42.46 Aligned_cols=34 Identities=29% Similarity=0.442 Sum_probs=28.9
Q ss_pred CCchhhhhhcccccCCcccccccccCcccccccccc
Q psy17821 157 PTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKVR 192 (194)
Q Consensus 157 p~~e~va~~L~~~e~l~k~~igd~~~e~~~~~~~~~ 192 (194)
--+..+++||..+++|+|.+|||||++.+. .+||
T Consensus 546 ~d~~~~~~ffr~n~rLdKk~iGdfLc~~k~--~~vL 579 (1386)
T KOG0928|consen 546 LDPTSVAEFFRYNPRLDKKTIGDFLCDPKN--VSVL 579 (1386)
T ss_pred CChHHHHHHHHhCccccHHHHHHHhcCcch--HHHH
Confidence 457899999999999999999999999865 4444
No 58
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=42.53 E-value=25 Score=26.63 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=22.7
Q ss_pred CCCCCCeeeeecCCceeEecc-----ccCccEEEEEc
Q psy17821 6 DRQVEPRGIIPLENIQVREVH-----DRHKPHCFELF 37 (194)
Q Consensus 6 ~~~~~p~G~i~l~~~~v~~~~-----~~~g~i~feL~ 37 (194)
...+.|.|.|+|.++.+..+. .-.++..|.|-
T Consensus 40 ~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~ 76 (122)
T cd01263 40 EKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLD 76 (122)
T ss_pred cccCCceEEEEhhhCcccccccCChhhcCCCCeEEEE
Confidence 344789999999998887774 33455566654
No 59
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=39.65 E-value=44 Score=22.33 Aligned_cols=35 Identities=31% Similarity=0.664 Sum_probs=26.7
Q ss_pred CCCCCCeeeeecCCceeEecccc------CccEEEEEcCCc
Q psy17821 6 DRQVEPRGIIPLENIQVREVHDR------HKPHCFELFTSG 40 (194)
Q Consensus 6 ~~~~~p~G~i~l~~~~v~~~~~~------~g~i~feL~~~~ 40 (194)
..+..|.+.|+|.++.|...... ..+.+|+|....
T Consensus 38 ~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~ 78 (104)
T PF00169_consen 38 KSDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPN 78 (104)
T ss_dssp TTESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEETT
T ss_pred ccceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeCC
Confidence 34789999999999999887665 456777776443
No 60
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=36.29 E-value=22 Score=22.69 Aligned_cols=13 Identities=15% Similarity=-0.079 Sum_probs=11.5
Q ss_pred CccEEEEEcCCcc
Q psy17821 29 HKPHCFELFTSGF 41 (194)
Q Consensus 29 ~g~i~feL~~~~~ 41 (194)
.||+++||-.+.+
T Consensus 28 GGRLVvEl~~~Ea 40 (51)
T PF11314_consen 28 GGRLVVELNPDEA 40 (51)
T ss_pred CcEEEEEeCHHHH
Confidence 7999999998876
No 61
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=34.55 E-value=70 Score=21.53 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=24.0
Q ss_pred CCCeeeeecCCceeEeccccC-ccEEEEEcCC
Q psy17821 9 VEPRGIIPLENIQVREVHDRH-KPHCFELFTS 39 (194)
Q Consensus 9 ~~p~G~i~l~~~~v~~~~~~~-g~i~feL~~~ 39 (194)
..|.+.|+|..+.|....+.. ++.+|.+...
T Consensus 39 ~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~ 70 (94)
T cd01250 39 NAHVKEIDLRRCTVRHNGKQPDRRFCFEVISP 70 (94)
T ss_pred cccceEEeccceEEecCccccCCceEEEEEcC
Confidence 678899999988887776654 6788888743
No 62
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=31.81 E-value=33 Score=22.12 Aligned_cols=20 Identities=5% Similarity=-0.026 Sum_probs=16.1
Q ss_pred CcccceeeccceEEEeEEEc
Q psy17821 101 EKDEWIKCLRVHVVFGHVVS 120 (194)
Q Consensus 101 ~sqf~i~l~g~~vvFG~V~~ 120 (194)
+.-+|++-+|+|.++|++++
T Consensus 33 ~~i~Y~~~dg~yli~G~l~d 52 (57)
T PF10411_consen 33 GGILYVDEDGRYLIQGQLYD 52 (57)
T ss_dssp TEEEEEETTSSEEEES-EEE
T ss_pred CeEEEEcCCCCEEEEeEEEe
Confidence 34688888999999999985
No 63
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=27.19 E-value=94 Score=20.70 Aligned_cols=27 Identities=33% Similarity=0.571 Sum_probs=19.9
Q ss_pred CCeeeeecCCceeEeccccCccEEEEEcC
Q psy17821 10 EPRGIIPLENIQVREVHDRHKPHCFELFT 38 (194)
Q Consensus 10 ~p~G~i~l~~~~v~~~~~~~g~i~feL~~ 38 (194)
.|.|.|+|....+... +..+.+|.+..
T Consensus 39 ~~~~~i~l~~~~~~~~--~~~~~~F~i~~ 65 (91)
T cd01246 39 KPRGTILLSGAVISED--DSDDKCFTIDT 65 (91)
T ss_pred CceEEEEeceEEEEEC--CCCCcEEEEEc
Confidence 8999999999876543 33467888764
No 64
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=22.72 E-value=47 Score=23.74 Aligned_cols=52 Identities=25% Similarity=0.438 Sum_probs=34.3
Q ss_pred CCCeeeeecCCceeEeccccCccEEEEEcCCccchhhhcccCCCCeeecCcceeeecCccCccccCceeeec
Q psy17821 9 VEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYS 80 (194)
Q Consensus 9 ~~p~G~i~l~~~~v~~~~~~~g~i~feL~~~~~NFi~Lc~~~~~g~~v~g~~~~Y~~s~f~rv~~~~~iqg~ 80 (194)
-.+++.|+|..++|...++...+..|.|.+.. ..|.-++-++.+++.|+..+
T Consensus 44 y~~~~~i~l~~~~v~~~~~~~~~~~F~I~~~~--------------------rsf~l~A~s~eEk~~W~~ai 95 (101)
T cd01219 44 FKVRARIDVSGMQVCEGDNLERPHSFLVSGKQ--------------------RCLELQARTQKEKNDWVQAI 95 (101)
T ss_pred EEEEEEEecccEEEEeCCCCCcCceEEEecCC--------------------cEEEEEcCCHHHHHHHHHHH
Confidence 35678899999988766555556667765433 15555556667777777654
No 65
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=22.11 E-value=31 Score=31.53 Aligned_cols=43 Identities=16% Similarity=0.171 Sum_probs=29.8
Q ss_pred CCceeecccccCCCc-ccceee-----ccceEEEeEEEccHHHHHHhhc
Q psy17821 88 KHTVYRMSAATAEEK-DEWIKC-----LRVHVVFGHVVSGQNVVSHIEN 130 (194)
Q Consensus 88 ~~~g~l~man~g~~s-qf~i~l-----~g~~vvFG~V~~G~dvv~~I~~ 130 (194)
...|.++.-|.|-|+ .-||-- .-.|.|.|||++||++++--+.
T Consensus 257 RerG~iTvRn~GvgeGrvYIyRedR~ss~sHnvVGrV~eGiELid~a~e 305 (512)
T COG4070 257 RERGAITVRNVGVGEGRVYIYREDRPSSLSHNVVGRVIEGIELIDLAEE 305 (512)
T ss_pred hhcceEEEEeeecccceEEEEecCCCCccccceeeeeecceEEEEeccc
Confidence 456777777777632 344541 1289999999999998876544
No 66
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=20.37 E-value=1.1e+02 Score=22.63 Aligned_cols=32 Identities=13% Similarity=0.054 Sum_probs=19.9
Q ss_pred CCCCCCeeeeecCCceeEecccc---CccEEEEEc
Q psy17821 6 DRQVEPRGIIPLENIQVREVHDR---HKPHCFELF 37 (194)
Q Consensus 6 ~~~~~p~G~i~l~~~~v~~~~~~---~g~i~feL~ 37 (194)
+.+..+.|+|.|.....++..+. .+.+.|+|.
T Consensus 38 kee~~~~p~i~lnl~gcev~~dv~~~~~kf~I~l~ 72 (106)
T cd01237 38 KEDSNGAPIGQLNLKGCEVTPDVNVAQQKFHIKLL 72 (106)
T ss_pred chhcCCCCeEEEecCceEEcccccccccceEEEEe
Confidence 34455666666666555556553 567888876
Done!