RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17821
(194 letters)
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide,
pleckst homology domain, guanine-nucleotide releasing
factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus
musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Length = 347
Score = 90.9 bits (225), Expect = 4e-22
Identities = 43/75 (57%), Positives = 56/75 (74%), Gaps = 2/75 (2%)
Query: 6 DRQVEPRGIIPLENIQVREVHDRHKPHCFELFTS--GFEFIKACKTDSEGKVVEGKHTVY 63
EPRGIIPLEN+ +REV D KP+CFEL+ + IKACKT+++G+VVEG H VY
Sbjct: 247 TTDKEPRGIIPLENLSIREVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVY 306
Query: 64 RMSAATAEEKDEWIK 78
R+SA + EEK+EW+K
Sbjct: 307 RISAPSPEEKEEWMK 321
Score = 52.3 bits (125), Expect = 1e-08
Identities = 30/40 (75%), Positives = 33/40 (82%)
Query: 152 NNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKV 191
N+LL+ + VAQFLYKGEGLNKT IGDYLGER DFN KV
Sbjct: 39 NDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIKV 78
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus}
SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A*
1u29_A* 1u27_A*
Length = 127
Score = 79.7 bits (196), Expect = 1e-19
Identities = 43/76 (56%), Positives = 56/76 (73%), Gaps = 2/76 (2%)
Query: 5 DDRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSG--FEFIKACKTDSEGKVVEGKHTV 62
EPRGIIPLEN+ +REV D KP+CFEL+ + IKACKT+++G+VVEG H V
Sbjct: 38 YTTDKEPRGIIPLENLSIREVLDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVV 97
Query: 63 YRMSAATAEEKDEWIK 78
YR+SA + EEK+EW+K
Sbjct: 98 YRISAPSPEEKEEWMK 113
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport,
pleckstrin homology domain, phosphatidylinositol
binding, structural genomics; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 130
Score = 67.4 bits (164), Expect = 6e-15
Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 5 DDRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIK---ACKTDSEGKVVEGKHT 61
+ + G + L ++ E + CF+LF + I K ++ G + + +
Sbjct: 40 TQKNGQWVGTVLLNACEIIERPSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPS 99
Query: 62 VYRM-SAATAEEKDEWIK 78
Y + A + + W+
Sbjct: 100 SYLIIRATSESDGRCWMD 117
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Length = 125
Score = 63.5 bits (154), Expect = 1e-13
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 14/76 (18%)
Query: 5 DDRQVEPRGIIPLENIQVREVHD--RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTV 62
DD + E + ++ ++N+++R+V H F LF + E + V +
Sbjct: 47 DDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNT------------EQRNVYKDYRQ 94
Query: 63 YRMSAATAEEKDEWIK 78
++ T EE D W
Sbjct: 95 LELACETQEEVDSWKA 110
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 129
Score = 63.4 bits (154), Expect = 2e-13
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 10/74 (13%)
Query: 5 DDRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYR 64
+ P G L V + D P + G F KV+ T Y
Sbjct: 54 SKEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLF----------KVITKDDTHYY 103
Query: 65 MSAATAEEKDEWIK 78
+ A++ E+ EWI+
Sbjct: 104 IQASSKAERAEWIE 117
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP:
b.62.1.1 PDB: 1a33_A 1c5f_A*
Length = 177
Score = 61.0 bits (149), Expect = 3e-12
Identities = 23/40 (57%), Positives = 28/40 (70%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG VVSGQ VV+ IE L + +RPL DV ++ C EL
Sbjct: 137 HVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA
splicing, alternative splicing, nucleus, rotamase,
cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A*
2gw2_A
Length = 179
Score = 61.0 bits (149), Expect = 4e-12
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG V+SGQ VV IEN D S+P +VR++ C EL
Sbjct: 140 HVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane,
repeat, rotamase, peptidylprolyl isomerase, structural
genomics; 2.00A {Homo sapiens}
Length = 192
Score = 61.1 bits (149), Expect = 4e-12
Identities = 23/40 (57%), Positives = 26/40 (65%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG V+SG V+ IENL D SRP DVRV+ C L
Sbjct: 150 HVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVL 189
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Length = 134
Score = 59.7 bits (144), Expect = 5e-12
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 2 DTGDDRQVEPRGIIPLENIQVREVHDRHK-----PHCFELFTSGFEFIKACKTDSEGKVV 56
D+++ P G I L N R++ ++ + FEL T + +T
Sbjct: 40 YPDDEKRKNPIGRINLANCTSRQIEPANREFCARRNTFELITVRPQREDDRETLVSQCRD 99
Query: 57 EGKHTVYRMSAATAEEKDEWIK 78
T +SA T EE+D W++
Sbjct: 100 TLCVTKNWLSADTKEERDLWMQ 121
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain,
phosphatidylinositol binding, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 118
Score = 57.4 bits (139), Expect = 2e-11
Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 15/77 (19%)
Query: 5 DDRQVEPRGIIPLENIQVREVHD---RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHT 61
D+ +P+G + L ++E+ FE+ + ++ +
Sbjct: 41 DEEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRM------------GQD 88
Query: 62 VYRMSAATAEEKDEWIK 78
Y + A++ E +EW+K
Sbjct: 89 SYVLMASSQAEMEEWVK 105
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A
{Mimivirus}
Length = 234
Score = 59.4 bits (144), Expect = 3e-11
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
VV G V G +V+ I ++ R + KC
Sbjct: 167 QVVIGQVYGGLDVLDKINSMIKPYAGRKYPTFSIGKCGAY 206
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin,
peptidyl-prolyl-CIS/trans isomerase, spliceosome,
U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
SCOP: b.62.1.1 PDB: 1qoi_A
Length = 177
Score = 57.5 bits (140), Expect = 6e-11
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG ++ G V+ IEN+P ++P V + +C E+
Sbjct: 138 HVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel,
disorder-order transition, HOOK-like, mRNA processing,
mRNA splicing, rotamase; NMR {Homo sapiens}
Length = 203
Score = 57.7 bits (140), Expect = 8e-11
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
H +FG V G +V+ + + + RP+ DV+++K
Sbjct: 126 HTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPS 165
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain,
structura genomics, structural genomics consortium, SGC,
unknown FUNC; 1.80A {Plasmodium falciparum} SCOP:
b.62.1.1
Length = 160
Score = 56.1 bits (136), Expect = 1e-10
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCN 149
H VFG V G +V IE + DK +PL+D++++
Sbjct: 120 HTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIK 157
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 54.4 bits (131), Expect = 3e-10
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 22/77 (28%)
Query: 5 DDRQVEPRGIIPLENIQ---VREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHT 61
D V P + + Q R + +PH F++ S
Sbjct: 37 DRTDVIPLLSVNMGGEQCGGCRRANTTDRPHAFQVILSD-------------------RP 77
Query: 62 VYRMSAATAEEKDEWIK 78
+SA + E EW++
Sbjct: 78 CLELSAESEAEMAEWMQ 94
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1;
isomerase-immunosuppressant complex, immunosuppressant;
HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB:
1xwn_A
Length = 166
Score = 55.7 bits (135), Expect = 3e-10
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCN 149
H +FG V G +V+ + + + RP+ DV+++K
Sbjct: 126 HTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAY 163
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4;
pleckstrin homoloy domain, signal transduction,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 109
Score = 53.9 bits (130), Expect = 3e-10
Identities = 14/75 (18%), Positives = 17/75 (22%), Gaps = 20/75 (26%)
Query: 5 DDRQVEPRGIIPLENIQVREVHDRH-KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVY 63
V PL V V D + + F+L G Y
Sbjct: 41 ASEDVAALESQPLLGFTVTLVKDENSESKVFQLLHKG-------------------MVFY 81
Query: 64 RMSAATAEEKDEWIK 78
A A WI
Sbjct: 82 VFKADDAHSTQRWID 96
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH
domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 117
Score = 54.3 bits (131), Expect = 4e-10
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 22/77 (28%)
Query: 5 DDRQVEPRGIIPLENIQVREVH---DRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHT 61
D+++ G IPL + +V V + + H F+ +G
Sbjct: 45 DEKEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAG-------------------VR 85
Query: 62 VYRMSAATAEEKDEWIK 78
Y SA + EE++ WI+
Sbjct: 86 TYFFSAESPEEQEAWIQ 102
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid
binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2i5c_A* 1zm0_A
Length = 109
Score = 53.9 bits (130), Expect = 4e-10
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 13/69 (18%)
Query: 10 EPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAAT 69
+P G I L V V + + ++ +++ Y + AAT
Sbjct: 47 DPLGAIHLRGCVVTSVESNSNG-------------RKSEEENLFEIITADEVHYFLQAAT 93
Query: 70 AEEKDEWIK 78
+E+ EWIK
Sbjct: 94 PKERTEWIK 102
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Length = 129
Score = 54.4 bits (131), Expect = 4e-10
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 13/74 (17%)
Query: 5 DDRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYR 64
+P G I L V V + + ++ +++ Y
Sbjct: 53 PAGAEDPLGAIHLRGCVVTSVESNSNG-------------RKSEEENLFEIITADEVHYF 99
Query: 65 MSAATAEEKDEWIK 78
+ AAT +E+ EWIK
Sbjct: 100 LQAATPKERTEWIK 113
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK
repeat, cytoplasm, GTP-binding, GTPase activation,
metal-binding, nucleotide-binding; NMR {Homo sapiens}
Length = 128
Score = 54.5 bits (130), Expect = 5e-10
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 2 DTGDDRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFE--FIKACKTDSEGKVVEGK 59
D + L V+ V + P F +A + + E +V
Sbjct: 40 SINDYIHSTHGKEMDLLRTTVK-VPGKRPPRAISAFGPSASGSAGQAEEENFEFLIVSST 98
Query: 60 HTVYRMSAATAEEKDEWIK 78
+ AA+ EE+D W++
Sbjct: 99 GQTWHFEAASFEERDAWVQ 117
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;
isomerase-immunosuppressant complex, immunosuppressant,
cyclophilin, structural G structural genomics
consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Length = 201
Score = 55.4 bits (134), Expect = 6e-10
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 110 RVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELNN 153
H +FG VV G +V+ E L DK +PL+ +V + N
Sbjct: 131 NKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEEIIVFKN 174
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain,
PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 122
Score = 53.6 bits (129), Expect = 8e-10
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 22/77 (28%)
Query: 5 DDRQVEPRGIIPLENIQVREVH---DRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHT 61
D+++ G IPL + +V V + + H F+ +G
Sbjct: 56 DEKEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAG-------------------VR 96
Query: 62 VYRMSAATAEEKDEWIK 78
Y SA + EE++ WI+
Sbjct: 97 TYFFSAESPEEQEAWIQ 113
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa,
KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A*
3bt8_A
Length = 172
Score = 54.1 bits (131), Expect = 9e-10
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG V+ G +VV IE + RP++ V++V EL
Sbjct: 133 HVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides;
pleckstrin, inositol tetrakisphosphate signal
transduction protein, adaptor protein; HET: 4IP; 1.80A
{Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Length = 126
Score = 53.2 bits (128), Expect = 1e-09
Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 21/75 (28%)
Query: 5 DDRQVEPRGIIPLENIQ-VREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVY 63
D EP I+ L V+ + + + +CF L +
Sbjct: 51 DQMSPEPIRILDLTECSAVQFDYSQERVNCFCLVFP--------------------FRTF 90
Query: 64 RMSAATAEEKDEWIK 78
+ A T E DEWIK
Sbjct: 91 YLCAKTGVEADEWIK 105
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 113
Score = 52.7 bits (127), Expect = 1e-09
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 21/71 (29%)
Query: 10 EPRGIIPLENIQVREVHD--RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSA 67
P+G+IPL+ + + F++ T+ K + A
Sbjct: 43 SPKGMIPLKGSTLTSPCQDFGKRMFVFKITTT-------------------KQQDHFFQA 83
Query: 68 ATAEEKDEWIK 78
A EE+D W++
Sbjct: 84 AFLEERDAWVR 94
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH
domain, signaling protein; 1.70A {Homo sapiens} SCOP:
b.55.1.1
Length = 108
Score = 52.0 bits (125), Expect = 2e-09
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 23/78 (29%)
Query: 5 DDRQVEPRGIIPLENIQVREV----HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKH 60
+++ +P+G ++ VR D K CFEL +
Sbjct: 40 NEKSKQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQD-------------------R 80
Query: 61 TVYRMSAATAEEKDEWIK 78
Y +A + E +W+
Sbjct: 81 RTYEFTATSPAEARDWVD 98
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics
consortium, SGC, isomerase; 2.50A {Plasmodium yoelii}
SCOP: b.62.1.1
Length = 196
Score = 53.5 bits (129), Expect = 2e-09
Identities = 7/42 (16%), Positives = 21/42 (50%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELNN 153
H +F V + +I ++ ++P+ D+++++ + N
Sbjct: 153 HTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTSTAVN 194
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin,
endoplasmic reticulum, glycoprot isomerase, rotamase;
1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A*
2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Length = 188
Score = 53.0 bits (128), Expect = 3e-09
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG V+ G VV +E+ D +PL+DV + C ++
Sbjct: 138 HVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 177
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain,
zizimin1, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 150
Score = 52.3 bits (125), Expect = 4e-09
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 19/69 (27%)
Query: 10 EPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAAT 69
EP+G I L++ +++ + FEL + Y ++A +
Sbjct: 68 EPKGSIFLDSCMGVVQNNKVRRFAFELKMQD-------------------KSSYLLAADS 108
Query: 70 AEEKDEWIK 78
E +EWI
Sbjct: 109 EVEMEEWIT 117
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum
cyclophilin isomerase, structural genomics; 2.01A
{Cryptosporidium parvum iowa II} PDB: 2qer_A
Length = 185
Score = 52.7 bits (127), Expect = 5e-09
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELNN 153
+V+FG ++ G ++ +EN P DK +P+ ++ + +N
Sbjct: 135 YVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDIVIHSN 176
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang
complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1
PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Length = 203
Score = 52.4 bits (126), Expect = 7e-09
Identities = 27/40 (67%), Positives = 31/40 (77%)
Query: 152 NNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKV 191
N LL+ T +A+FLYKGEGLNKTAIGDYLGER + N V
Sbjct: 37 NELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAV 76
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans
isomerization, protein-folding, peptidylprolyl ISO
structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Length = 176
Score = 51.5 bits (124), Expect = 9e-09
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVD-KMSRPLQDVRVVKCN 149
H VFG V G VV I N+ V+ K +P +DV ++
Sbjct: 136 HTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINIT 174
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 52.0 bits (125), Expect = 2e-08
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELN 152
HVVFG V+ G V +EN+ V +P + + +C EL
Sbjct: 146 HVVFGQVIKGMGVAKILENVEVKG-EKPAKLCVIAECGELK 185
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain,
pleckstrin homology domain-containing protein family A
member 5; NMR {Homo sapiens}
Length = 128
Score = 49.8 bits (119), Expect = 2e-08
Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 22/77 (28%)
Query: 5 DDRQVEPRGIIPLENIQVREV---HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHT 61
D+++ G I L + Q+ + ++ + F+
Sbjct: 55 DEKEEGILGSILLPSFQIALLTSEDHINRKYAFKAAHPN-------------------MR 95
Query: 62 VYRMSAATAEEKDEWIK 78
Y T +E + W+K
Sbjct: 96 TYYFCTDTGKEMELWMK 112
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual
dimerization induced by V derived sequence, signaling
protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Length = 148
Score = 49.5 bits (118), Expect = 4e-08
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 23/78 (29%)
Query: 5 DDRQVEPRGIIPLENIQVREV----HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKH 60
D+ + +G ++ VR D K CFE+
Sbjct: 54 SDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPD-------------------K 94
Query: 61 TVYRMSAATAEEKDEWIK 78
+Y+ +AA+ ++ +EW++
Sbjct: 95 RIYQFTAASPKDAEEWVQ 112
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, cyclophilin-cyclosporin complex,
immunosuppressant, cyclophilin; HET: BMT; 2.1A
{Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Length = 170
Score = 49.4 bits (119), Expect = 4e-08
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG V+ G NVV +E + V + C EL
Sbjct: 132 HVVFGKVIEGMNVVREMEKEGAKS-GYVKRSVVITDCGEL 170
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 115
Score = 48.5 bits (116), Expect = 5e-08
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 22/76 (28%)
Query: 5 DDRQVEPRGIIPL-ENIQVREVHDRH-KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTV 62
+ + +G I L EN V + D+ K F +
Sbjct: 41 SEDLKDKKGDILLDENCCVESLPDKDGKKCLFLVKCF--------------------DKT 80
Query: 63 YRMSAATAEEKDEWIK 78
+ +SA+ ++K EWI+
Sbjct: 81 FEISASDKKKKQEWIQ 96
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid
degradation, phosphatidylinositol (3, 4)-bisphosphate,
signalling; HET: CIT; 1.40A {Homo sapiens} SCOP:
b.55.1.1
Length = 125
Score = 47.5 bits (113), Expect = 1e-07
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 24/78 (30%)
Query: 5 DDRQVEPRGIIPLENI-QVREVHD---RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKH 60
+ + EP +IPL+ + +V+E + + FE+ T+ +T
Sbjct: 47 SELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTS-------RT----------- 88
Query: 61 TVYRMSAATAEEKDEWIK 78
+ + A + EE WIK
Sbjct: 89 --FYVQADSPEEMHSWIK 104
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix,
disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1
PDB: 1xyh_A 2oju_A*
Length = 161
Score = 48.3 bits (116), Expect = 1e-07
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 110 RVHVVFGHVVSGQNVVSHIENLPVDKMS-RPLQDVRVVKCNELNN 153
+ VFG V+ G + +E LPV++ + RPL DV + N
Sbjct: 113 MKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHAN 157
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha,
guanine-nucleotide releasing factor, signaling PR; 2.20A
{Homo sapiens} PDB: 3l8n_A 3swv_A
Length = 211
Score = 49.0 bits (117), Expect = 1e-07
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 152 NNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKV 191
+L T +AQFL++ E L+ T +G++LG+ FN++V
Sbjct: 43 QGMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDKFNKEV 82
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A
{Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A
1e8k_A 1dyw_A 2igw_A 2hqj_A
Length = 173
Score = 48.3 bits (116), Expect = 1e-07
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG VV G +VV +E+ +P++D + C +L
Sbjct: 133 HVVFGRVVEGLDVVKAVESNGSQS-GKPVKDCMIADCGQL 171
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH
domain, signaling protein; 2.60A {Mus musculus} SCOP:
b.55.1.1 PDB: 2otx_A
Length = 211
Score = 48.6 bits (115), Expect = 1e-07
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 23/78 (29%)
Query: 5 DDRQVEPRGIIPLENIQVREV----HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKH 60
D+ + +G ++ VR D K CFE+
Sbjct: 143 SDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPD-------------------K 183
Query: 61 TVYRMSAATAEEKDEWIK 78
+Y+ +AA+ ++ +EW++
Sbjct: 184 RIYQFTAASPKDAEEWVQ 201
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans
isomerization, peptidylprolyl isomerase, protein-
folding, structural genomics consortium; 1.65A {Homo
sapiens} SCOP: b.62.1.1
Length = 197
Score = 48.1 bits (115), Expect = 2e-07
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 110 RVHVVFGHVVSGQNVVSHIENLPVD-KMSRPLQDVRVVKCNELNN 153
+ H +FG VV G +V++ +EN+ D K RP +++R+ +
Sbjct: 132 KKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVFVD 176
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction;
1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Length = 123
Score = 46.7 bits (111), Expect = 3e-07
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 22/77 (28%)
Query: 5 DDRQVEPRGIIPLENIQVREV---HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHT 61
D R+ G + L + +R R + F G
Sbjct: 45 DSREESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMR------------------- 85
Query: 62 VYRMSAATAEEKDEWIK 78
Y ++A T E+ W++
Sbjct: 86 TYVLAADTLEDLRGWLR 102
>1z81_A Cyclophilin; structural genomics, structural genomics consortium,
SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP:
b.62.1.1
Length = 229
Score = 47.4 bits (113), Expect = 5e-07
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 112 HVVFGHVVS--GQNVVSHIENLPVD-KMSRPLQDVRVVKCNEL 151
+VVFG ++ ++ IEN+ V + +P + VV+C EL
Sbjct: 187 NVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling
protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB:
3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Length = 120
Score = 45.8 bits (108), Expect = 5e-07
Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 4/77 (5%)
Query: 2 DTGDDRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHT 61
+ + P + L V E ++ S +F+ K + ++ H
Sbjct: 39 TADRKKDLVPVMSLALSECTVTEHSRKNSTSSPNSTGSDAKFVLHAKQN---GIIRRGHN 95
Query: 62 VYRMSAATAEEKDEWIK 78
+ A + E W
Sbjct: 96 -WVFKADSYESMMSWFD 111
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009,
rotamase, structural proteomics in europe, spine; 2.6A
{Mycobacterium tuberculosis} SCOP: b.62.1.1
Length = 191
Score = 46.6 bits (111), Expect = 6e-07
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 112 HVVFGHVVS--GQNVVSHIENLPVDKMSRPLQDVRVVK 147
H +FG V+ Q VV I D RP V +
Sbjct: 150 HTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIES 187
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Length = 228
Score = 46.9 bits (111), Expect = 7e-07
Identities = 7/74 (9%), Positives = 26/74 (35%), Gaps = 21/74 (28%)
Query: 5 DDRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYR 64
+D + + +G + + + + + K + ++ + +T +
Sbjct: 96 NDSEEKLKGTVEVRSAKEIIDNTN-KENGIDIIMAD-------RT-------------FH 134
Query: 65 MSAATAEEKDEWIK 78
+ A + E+ +W
Sbjct: 135 LIAESPEDASQWFS 148
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin, isomerase, S
genomics, structural genomics consortium; HET: BMT;
1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Length = 186
Score = 46.4 bits (111), Expect = 7e-07
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKC 148
HVVFG V+ G VV IE +P + V +
Sbjct: 149 HVVFGKVLEGMEVVKSIEKCGSQN-GKPTKSVCITAS 184
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 45.1 bits (107), Expect = 9e-07
Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 21/74 (28%)
Query: 5 DDRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYR 64
+ P I L + V + + FE+ T V
Sbjct: 45 TAQDANPLDSIDLSSA-VFDCKADAEEGIFEIKTPS--------------------RVIT 83
Query: 65 MSAATAEEKDEWIK 78
+ AAT + W++
Sbjct: 84 LKAATKQAMLYWLQ 97
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH
domains (ARAP) 2, PH domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 115
Score = 44.7 bits (106), Expect = 1e-06
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 23/74 (31%)
Query: 5 DDRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYR 64
+++++ +GIIPL I V + FE+ T+ +
Sbjct: 42 NEKEMYSKGIIPLSAISTVRVQ---GDNKFEVVTT--------------------QRTFV 78
Query: 65 MSAATAEEKDEWIK 78
EE+++WI
Sbjct: 79 FRVEKEEERNDWIS 92
>2hq6_A Serologically defined colon cancer antigen 10; protein folding,
peptidyl-prolyl CIS-trans isomerase, struct genomics;
1.75A {Homo sapiens}
Length = 185
Score = 45.7 bits (109), Expect = 1e-06
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 110 RVHVVFGHVVS-GQNVVSHIENLPVDKMSRPLQDVRVVKCNELNN 153
H +FG V + + + +D RP ++ C L N
Sbjct: 137 NKHTIFGKVTGDTVYNMLRLSEVDIDDDERPHNPHKIKSCEVLFN 181
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide
exchange factor, signaling protein; 1.41A {Legionella
pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
Length = 356
Score = 46.6 bits (110), Expect = 1e-06
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 154 LLEPTEMGVAQFLYKG-EGLNKTAIGDYLGERHDFNEKV 191
+A+F ++ + L+ A+GDYL N++V
Sbjct: 36 YKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQV 74
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein
binding, structural genomics, NPPSFA; 1.70A {Mus
musculus}
Length = 126
Score = 44.6 bits (105), Expect = 1e-06
Identities = 11/74 (14%), Positives = 18/74 (24%), Gaps = 18/74 (24%)
Query: 5 DDRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYR 64
+ P + + V+ D P F+L K VY+
Sbjct: 50 KHYKSTPGKKVSIVGWMVQLPDDPEHPDIFQLNNP------------------DKGNVYK 91
Query: 65 MSAATAEEKDEWIK 78
+ W K
Sbjct: 92 FQTGSRFHAILWHK 105
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural
genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Length = 232
Score = 45.9 bits (109), Expect = 2e-06
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 112 HVVFGHVVS-GQNVVSHIENLPVDKMSRPLQDVRVVKCNELNN 153
+ +FG V + +L V K RP+ + + L N
Sbjct: 152 YTLFGKVTGHTLYNLMKFNDLEVGKEDRPMTPPFIKSVDVLWN 194
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase,
isomerase-immunosuppressant compl; HET: BMT; 1.47A
{Moniliophthora perniciosa} PDB: 3o7t_A
Length = 164
Score = 44.8 bits (107), Expect = 2e-06
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG V+ G ++V +E + +++ C +
Sbjct: 125 HVVFGEVIEGLDIVRKVEGKGSAS-GKTNATIKITDCGTV 163
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW,
decode, cytoplasm, rotamase, structural genomics; HET:
PG5; 1.95A {Encephalitozoon cuniculi}
Length = 193
Score = 45.3 bits (108), Expect = 2e-06
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDK-MSRPLQDVRVVKCNEL 151
HVVFG VV G +VV I + + + + C L
Sbjct: 150 HVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGVL 190
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization,
structural genomics consortium, SGC, alternative
splicing, mRNA processing; 1.61A {Homo sapiens} SCOP:
b.62.1.1 PDB: 3uch_A 1zmf_A
Length = 173
Score = 44.8 bits (107), Expect = 2e-06
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG V G +V+ IE +P Q V + C E
Sbjct: 134 HVVFGEVTEGLDVLRQIEAQGSKD-GKPKQKVIIADCGEY 172
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase,
RNA-binding, cyclosporin, cyclophilin, beta-barrel;
1.50A {Schistosoma mansoni} PDB: 2ck1_A
Length = 172
Score = 44.8 bits (107), Expect = 3e-06
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG VV GQNVV +E++ + + V + +C EL
Sbjct: 133 HVVFGRVVDGQNVVKKMESVGSKS-GKVKEPVIISRCGEL 171
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin D; HET: BMT MLE
CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A*
3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A*
3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A*
2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Length = 165
Score = 44.4 bits (106), Expect = 3e-06
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFGHV+ G +VV IE+ R + + + C +L
Sbjct: 126 HVVFGHVIEGMDVVKKIESFGSKS-GRTSKKIVITDCGQL 164
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 107
Score = 43.3 bits (102), Expect = 3e-06
Identities = 10/77 (12%), Positives = 22/77 (28%), Gaps = 21/77 (27%)
Query: 2 DTGDDRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHT 61
D + + + L +V + F + G E
Sbjct: 39 DRNRSK--VAQQPLSLVGCEVVPDPSPDHLYSFRILHKGEE------------------- 77
Query: 62 VYRMSAATAEEKDEWIK 78
+ ++ A ++EE W+
Sbjct: 78 LAKLEAKSSEEMGHWLG 94
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, transferase; NMR {Homo sapiens}
Length = 164
Score = 43.6 bits (102), Expect = 6e-06
Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 13/74 (17%)
Query: 5 DDRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYR 64
+ +G I + I+ E+ + + C+ +VV +T+Y
Sbjct: 54 RAEKKYRKGFIDVSKIKCVEIVK------------NDDGVIPCQNKYPFQVVHDANTLY- 100
Query: 65 MSAATAEEKDEWIK 78
+ A + + +D W+K
Sbjct: 101 IFAPSPQSRDLWVK 114
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic,
inhibito isomerase-isomerase inhibitor complex; HET:
EA4; 2.14A {Homo sapiens}
Length = 184
Score = 43.4 bits (103), Expect = 7e-06
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG V G N+V +E + + + + C +L
Sbjct: 145 HVVFGKVKEGMNIVEAMERFGSRN-GKTSKKITIADCGQL 183
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 41.8 bits (98), Expect = 1e-05
Identities = 6/76 (7%), Positives = 20/76 (26%), Gaps = 12/76 (15%)
Query: 5 DDRQVEPRGIIPL--ENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTV 62
D + + + + I +R + + + ++V
Sbjct: 39 DQTRQNIEDKVHMPMDCINIRTGQECRDTQPPDGKSKDCML----------QIVCRDGKT 88
Query: 63 YRMSAATAEEKDEWIK 78
+ A + ++ W
Sbjct: 89 ISLCAESTDDCLAWKF 104
Score = 36.4 bits (84), Expect = 0.001
Identities = 4/28 (14%), Positives = 11/28 (39%)
Query: 83 KVVEGKHTVYRMSAATAEEKDEWIKCLR 110
++V + A + ++ W L+
Sbjct: 80 QIVCRDGKTISLCAESTDDCLAWKFTLQ 107
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology
domain, PKB, AKT, phosphoinositide,
serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo
sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A*
2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Length = 125
Score = 41.8 bits (98), Expect = 2e-05
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 22/79 (27%)
Query: 5 DDRQVEPRGIIPLENIQVREV----HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKH 60
+ Q + PL N V + +R +P+ F + ++
Sbjct: 42 ERPQDVDQREAPLNNFSVAQCQLMKTERPRPNTFIIRC-----------------LQWTT 84
Query: 61 TVYRM-SAATAEEKDEWIK 78
+ R T EE++EW
Sbjct: 85 VIERTFHVETPEEREEWTT 103
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 117
Score = 41.3 bits (97), Expect = 2e-05
Identities = 15/101 (14%), Positives = 24/101 (23%), Gaps = 41/101 (40%)
Query: 10 EPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAAT 69
E +G+I L ++ I A KT E + K T
Sbjct: 48 ECKGVIDLAEVEAVAPGT--------------PTIGAPKTVDEKAFFDVKTT-------- 85
Query: 70 AEEKDEWIKYSEGKVVEGKHTVYRMSAATAEEKDEWIKCLR 110
VY A +W+ ++
Sbjct: 86 -------------------RRVYNFCAQDVPSAQQWVDRIQ 107
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp
F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus}
SCOP: b.62.1.1
Length = 172
Score = 41.8 bits (99), Expect = 2e-05
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 112 HVVFGHVV--SGQNVVSHIENLPVDK-MSRPLQDVRVVKCNEL 151
HVVFG V +VV IE L R ++V C EL
Sbjct: 130 HVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology,
lipid transport; NMR {Homo sapiens}
Length = 94
Score = 40.5 bits (95), Expect = 3e-05
Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 22/78 (28%)
Query: 1 MDTGDDRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKH 60
+ D+ + RG I L + F++ +
Sbjct: 32 YKSEDETEYGCRGSICLSKAVITP--HDFDECRFDISVN--------------------D 69
Query: 61 TVYRMSAATAEEKDEWIK 78
+V+ + A + + +WI
Sbjct: 70 SVWYLRAQDPDHRQQWID 87
Score = 33.1 bits (76), Expect = 0.010
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 84 VVEGKHTVYRMSAATAEEKDEWIKCLRVH 112
+ +V+ + A + + +WI + H
Sbjct: 64 DISVNDSVWYLRAQDPDHRQQWIDAIEQH 92
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc
binding, X-linked agammaglobulinemia, tyrosine-protein
kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A*
2z0p_A* 1bwn_A*
Length = 169
Score = 41.5 bits (96), Expect = 4e-05
Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 22/109 (20%)
Query: 2 DTGDDRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHT 61
D R+ +G I +E I E K E
Sbjct: 42 DFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQ---------------------IPR 80
Query: 62 VYRMSAATAEEKDEWIKYSEGKVVEGKHTVYRMSAATAEEKDEWIKCLR 110
S+ + +VV + +Y + + T E + WI L+
Sbjct: 81 RGEESSEMEQISIIERFPYPFQVVYDEGPLY-VFSPTEELRKRWIHQLK 128
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal
transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2
b.55.1.2 PDB: 1irs_A*
Length = 264
Score = 41.0 bits (95), Expect = 8e-05
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 10 EPRGIIPLENI-QVREVHDRHKPHCFELFTSGFEFIKACKTDSE 52
P+ IPLE+ + + D H L+T F A +++E
Sbjct: 56 APKRSIPLESCFNINKRADSKNKHLVALYTRDEHFAIAADSEAE 99
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 39.4 bits (92), Expect = 9e-05
Identities = 9/74 (12%), Positives = 17/74 (22%), Gaps = 22/74 (29%)
Query: 5 DDRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYR 64
+ L QV+ + F+L + + Y
Sbjct: 43 HATSNRQPAKLNLLTCQVKPNAED--KKSFDLIS--------------------HNRTYH 80
Query: 65 MSAATAEEKDEWIK 78
A ++ WI
Sbjct: 81 FQAEDEQDYVAWIS 94
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain,
BAR-PH domain, protein transpo; 2.05A {Homo sapiens}
PDB: 2z0o_A 2elb_A
Length = 385
Score = 41.1 bits (95), Expect = 1e-04
Identities = 10/71 (14%), Positives = 23/71 (32%), Gaps = 18/71 (25%)
Query: 8 QVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSA 67
V + ++N V V + +CF++ + + A
Sbjct: 316 DVAGGLAMDIDNCSVMAVDCEDRRYCFQITSF------------------DGKKSSILQA 357
Query: 68 ATAEEKDEWIK 78
+ ++ +EWI
Sbjct: 358 ESKKDHEEWIC 368
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH
domain, lipid-binding, membrane, membrane protein;
1.90A {Homo sapiens} PDB: 2kcj_A
Length = 103
Score = 37.5 bits (87), Expect = 4e-04
Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 21/78 (26%)
Query: 1 MDTGDDRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKH 60
D+ DD +G I + +++ EL G
Sbjct: 30 YDSQDDVCKGSKGSIKMAVCEIKV--HSADNTRMELIIPG-------------------E 68
Query: 61 TVYRMSAATAEEKDEWIK 78
+ M A A E+ W+
Sbjct: 69 QHFYMKAVNAAERQRWLV 86
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 39.6 bits (92), Expect = 4e-04
Identities = 8/67 (11%), Positives = 21/67 (31%), Gaps = 11/67 (16%)
Query: 12 RGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAE 71
+G + ++ ++V ++ D + F + + E
Sbjct: 378 KGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLH-----------RGATGDSHLLCTRKPE 426
Query: 72 EKDEWIK 78
+K W+K
Sbjct: 427 QKQRWLK 433
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the
pleckstrin homology domain, structural genomics; NMR
{Mus musculus} SCOP: b.55.1.1
Length = 126
Score = 37.6 bits (87), Expect = 5e-04
Identities = 10/83 (12%), Positives = 23/83 (27%), Gaps = 29/83 (34%)
Query: 5 DDRQVEPRGIIPLENIQVREVHD---------RHKPHCFELFTSGFEFIKACKTDSEGKV 55
D+ Q G + ++Q+ + P CF +
Sbjct: 51 DNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVINAL---------------- 94
Query: 56 VEGKHTVYRMSAATAEEKDEWIK 78
Y + A ++ +W++
Sbjct: 95 ----SQRYFLQANDQKDLKDWVE 113
Score = 30.3 bits (68), Expect = 0.18
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 84 VVEGKHTVYRMSAATAEEKDEWIKCLR 110
V+ Y + A ++ +W++ L
Sbjct: 90 VINALSQRYFLQANDQKDLKDWVEALN 116
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain,
PIP2 binding site, structural genomics; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 126
Score = 37.2 bits (86), Expect = 6e-04
Identities = 8/82 (9%), Positives = 23/82 (28%), Gaps = 24/82 (29%)
Query: 1 MDTGDDRQVEPRGIIPLENIQVREV----HDRHKPHCFELFTSGFEFIKACKTDSEGKVV 56
M + +++ EP+ ++ L+ V F G
Sbjct: 42 MCSYREKKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVKEG---------------- 85
Query: 57 EGKHTVYRMSAATAEEKDEWIK 78
++ +++ W++
Sbjct: 86 ----DTVIFASDDEQDRILWVQ 103
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small
molecular weight G-protein, complex, protein-protein
complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Length = 354
Score = 37.5 bits (87), Expect = 0.001
Identities = 13/67 (19%), Positives = 19/67 (28%), Gaps = 16/67 (23%)
Query: 12 RGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAE 71
+ I + + + P F L + G E G Y + AA
Sbjct: 261 KNSIKVSCLGLEGNLQG-DPCRFALTSRGPE---------------GGIQRYVLQAADPA 304
Query: 72 EKDEWIK 78
WIK
Sbjct: 305 ISQAWIK 311
Score = 29.8 bits (67), Expect = 0.53
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 86 EGKHTVYRMSAATAEEKDEWIKCLR 110
EG Y + AA WIK +
Sbjct: 290 EGGIQRYVLQAADPAISQAWIKHVA 314
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 129
Score = 36.2 bits (83), Expect = 0.002
Identities = 13/81 (16%), Positives = 22/81 (27%), Gaps = 12/81 (14%)
Query: 5 DDRQVEPRGIIPLENI-------QVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVE 57
++ + IPL I + PHCFE+ T +
Sbjct: 41 NESGSKYYKEIPLSEILRISSPRDFTNISQGSNPHCFEIITDTMVYFVGENNGD-----S 95
Query: 58 GKHTVYRMSAATAEEKDEWIK 78
+ V + + W K
Sbjct: 96 SHNPVLAATGVGLDVAQSWEK 116
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH
domain, phret1, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 130
Score = 35.7 bits (82), Expect = 0.002
Identities = 9/109 (8%), Positives = 20/109 (18%), Gaps = 39/109 (35%)
Query: 2 DTGDDRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHT 61
+ E R +I ++ + E +
Sbjct: 41 HDETAQDEEDRVVIHFNVRDIKVGQECQDVQPPEGRSRDGLL------------------ 82
Query: 62 VYRMSAATAEEKDEWIKYSEGKVVEGKHTVYRMSAATAEEKDEWIKCLR 110
V + + + A T ++ W L
Sbjct: 83 ---------------------TVNLREGSRLHLCAETRDDAIAWKTALM 110
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange
factor (GEF), small G-protein, signaling protein; 2.40A
{Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A
1kzg_A 1rj2_A
Length = 353
Score = 36.5 bits (84), Expect = 0.003
Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 19/67 (28%)
Query: 12 RGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAE 71
+ + + + + E + + FE++ + VY + A T E
Sbjct: 271 KQSLNMTAVGITE-NVKGDTKKFEIW------------------YNAREEVYIIQAPTPE 311
Query: 72 EKDEWIK 78
K W+
Sbjct: 312 IKAAWVN 318
Score = 30.7 bits (69), Expect = 0.31
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 86 EGKHTVYRMSAATAEEKDEWIKCLR 110
+ VY + A T E K W+ +R
Sbjct: 297 NAREEVYIIQAPTPEIKAAWVNAIR 321
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 112
Score = 34.9 bits (80), Expect = 0.003
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 23/73 (31%)
Query: 9 VEPRGIIPLENIQVREVHDR---HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRM 65
IPL + ++ H ++L + +
Sbjct: 47 GRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQW--------------------AKQSWYL 86
Query: 66 SAATAEEKDEWIK 78
SA++AE + +W++
Sbjct: 87 SASSAELQQQWLE 99
Score = 27.2 bits (60), Expect = 1.5
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 88 KHTVYRMSAATAEEKDEWIKCLR 110
+ +SA++AE + +W++ L
Sbjct: 80 AKQSWYLSASSAELQQQWLETLS 102
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 36.4 bits (84), Expect = 0.003
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 11/67 (16%)
Query: 12 RGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAE 71
+G I ++ +V ++ D + F+ + V+ A E
Sbjct: 301 KGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHN-----------KETEEVHLFFAKKLE 349
Query: 72 EKDEWIK 78
EK W++
Sbjct: 350 EKIRWLR 356
Score = 29.4 bits (66), Expect = 0.62
Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 6/84 (7%)
Query: 32 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDE-----WIKYSEGKVVE 86
F LF K + +G+ + + E+ + +K + +
Sbjct: 277 VFF-LFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNK 335
Query: 87 GKHTVYRMSAATAEEKDEWIKCLR 110
V+ A EEK W++ R
Sbjct: 336 ETEEVHLFFAKKLEEKIRWLRAFR 359
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex;
HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB:
1j2a_A* 1vai_A* 1clh_A
Length = 166
Score = 35.6 bits (83), Expect = 0.004
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMS----RPLQDVRVVK 147
+ VFG VV G +V I +P + P + V ++
Sbjct: 122 YAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILS 161
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics
center for infectious disease; 1.65A {Burkholderia
pseudomallei} PDB: 3t1u_A*
Length = 167
Score = 35.6 bits (83), Expect = 0.004
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDK----MSRPLQDVRVVK 147
+ VFG VV GQ++V I+ + P DV + K
Sbjct: 124 YAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVIEK 163
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO,
GTPase, guanine-nucleotide releas factor,
phosphorylation, signaling protein; 1.70A {Homo sapiens}
SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Length = 311
Score = 35.9 bits (83), Expect = 0.004
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 16/67 (23%)
Query: 12 RGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAE 71
+ + + V E H P F L+ + A++ E
Sbjct: 251 KSKLFTSELGVTE-HVEGDPCKFALWVGR---------------TPTSDNKIVLKASSIE 294
Query: 72 EKDEWIK 78
K +WIK
Sbjct: 295 NKQDWIK 301
Score = 29.0 bits (65), Expect = 0.91
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 86 EGKHTVYRMSAATAEEKDEWIKCLR 110
+ A++ E K +WIK +R
Sbjct: 280 PTSDNKIVLKASSIENKQDWIKHIR 304
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex;
HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB:
2nul_A 2rs4_A
Length = 164
Score = 35.2 bits (82), Expect = 0.005
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDK----MSRPLQDVRVVK 147
+ VF VV G + V I+ + + P +DV +
Sbjct: 120 YCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIES 159
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine
nucleotide exchange factor (GEF), ARF small GTP-binding
proteins; 1.93A {Saccharomyces cerevisiae} SCOP:
a.118.3.1 PDB: 1re0_B*
Length = 230
Score = 35.2 bits (81), Expect = 0.008
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 154 LLEPTEMGVAQFLYKGEG-LNKTAIGDYLGERHDFNEKV 191
+ ++ +A+FL+ +NK IG L +
Sbjct: 51 IASDSDKDIAEFLFNNNNRMNKKTIGLLLCHP--DKVSL 87
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology
domain, pleckstrin homology domain, GTPase, guanine
nucleotide exchange factor; 2.80A {Mus musculus} SCOP:
a.87.1.1 b.55.1.1
Length = 377
Score = 35.0 bits (80), Expect = 0.010
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 12 RGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAE 71
R +IP E +QVR + + + I K++SEG+ V+ + ++ E
Sbjct: 303 RHMIPTEALQVRALPSA------DAEANAVCEIVHVKSESEGR----PERVFHLCCSSPE 352
Query: 72 EKDEWIK 78
+ +++K
Sbjct: 353 SRKDFLK 359
Score = 31.1 bits (70), Expect = 0.22
Identities = 3/29 (10%), Positives = 13/29 (44%)
Query: 82 GKVVEGKHTVYRMSAATAEEKDEWIKCLR 110
+ V+ + ++ E + +++K +
Sbjct: 334 SESEGRPERVFHLCCSSPESRKDFLKSVH 362
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 34.6 bits (79), Expect = 0.015
Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 13/67 (19%)
Query: 12 RGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAE 71
+ + L + QVR+ + + ++ F I+ + Y + T E
Sbjct: 447 KDFVNLHSFQVRDDSSGDR--DNKKWSHMFLLIE-----------DQGAQGYELFFKTRE 493
Query: 72 EKDEWIK 78
K +W++
Sbjct: 494 LKKKWME 500
Score = 28.5 bits (63), Expect = 1.6
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 86 EGKHTVYRMSAATAEEKDEWIKCLR 110
+ Y + T E K +W++
Sbjct: 479 DQGAQGYELFFKTRELKKKWMEQFE 503
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural
genomics, spectrin beta chain, brain 2, KIAA0302; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 123
Score = 32.6 bits (74), Expect = 0.028
Identities = 11/76 (14%), Positives = 15/76 (19%), Gaps = 20/76 (26%)
Query: 4 GDDRQVEPRGIIPLENIQVREVHDRHK-PHCFELFTSGFEFIKACKTDSEGKVVEGKHTV 62
+ L Q D K H F+L
Sbjct: 54 SAGVPYHGEVPVSLARAQGSVAFDYRKRKHVFKLGLQDG-------------------KE 94
Query: 63 YRMSAATAEEKDEWIK 78
Y A E W++
Sbjct: 95 YLFQAKDEAEMSSWLR 110
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 137
Score = 32.7 bits (74), Expect = 0.032
Identities = 8/75 (10%), Positives = 22/75 (29%), Gaps = 17/75 (22%)
Query: 5 DDRQVEPRGIIPLENIQVR-EVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVY 63
D+ +P + L+ +V +V+ + C +L +
Sbjct: 47 DEAPGDPIQQLNLKGCEVVPDVNVSGQKFCIKLLV----------------PSPEGMSEI 90
Query: 64 RMSAATAEEKDEWIK 78
+ ++ W+
Sbjct: 91 YLRCQDEQQYARWMA 105
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator,
pleckstrin homology domain, STR genomics consortium,
SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Length = 124
Score = 32.5 bits (74), Expect = 0.032
Identities = 7/73 (9%), Positives = 15/73 (20%), Gaps = 21/73 (28%)
Query: 8 QVEPRGIIPLENIQVREV--HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRM 65
P + L + + + EL + + Y +
Sbjct: 63 FSTPEYTVELRGATLSWAPKDKSSRKNVLELRSR-------------------DGSEYLI 103
Query: 66 SAATAEEKDEWIK 78
+ W K
Sbjct: 104 QHDSEAIISTWHK 116
Score = 25.6 bits (56), Expect = 6.3
Identities = 3/28 (10%), Positives = 9/28 (32%)
Query: 83 KVVEGKHTVYRMSAATAEEKDEWIKCLR 110
++ + Y + + W K +
Sbjct: 92 ELRSRDGSEYLIQHDSEAIISTWHKAIA 119
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 33.3 bits (76), Expect = 0.045
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 23/72 (31%)
Query: 12 RGIIPLENIQVREVHDRHK-----PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMS 66
+ + L + QVR+ + H F L + + Y +
Sbjct: 275 KASVNLHSFQVRDDSSGERDNKKWSHMFLL------------------IEDQGAQGYELF 316
Query: 67 AATAEEKDEWIK 78
T E K +W++
Sbjct: 317 FKTRELKKKWME 328
Score = 28.3 bits (63), Expect = 1.6
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 86 EGKHTVYRMSAATAEEKDEWIKCLR 110
+ Y + T E K +W++
Sbjct: 307 DQGAQGYELFFKTRELKKKWMEQFE 331
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 33.0 bits (75), Expect = 0.049
Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 6/108 (5%)
Query: 3 TGDDRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTV 62
G ++P E ++ +P L + +GK
Sbjct: 232 RGQGDLLQPGREFLKEGTLMKVTGKNRRPRHLFLMNDVLLY---TYPQKDGKYR--LKNT 286
Query: 63 YRMSAATAEEKDEWIKYSEGKVVEGKHTVYRMSAATAEEKDEWIKCLR 110
++ K +E + +SA++ E+DEW CL
Sbjct: 287 LAVANMKVSRPVME-KVPYALKIETSESCLMLSASSCAERDEWYGCLS 333
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21,
myristate, transport, nucleotide-binding, rhogap
protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dhj_A
Length = 168
Score = 32.1 bits (72), Expect = 0.056
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 6 DRQVEPRGIIPLENIQVREVHDRHK-PHCFELFTSGFEFIKACKTDSE 52
E I + + + K + F L TS E + + +
Sbjct: 51 TTPSEEEQPISVNACLIDISYSETKRKNVFRLTTSDCECLFQAEDRDD 98
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY
crystallography, regulation of RHOA GTPase, protein
complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 3kz1_A*
Length = 368
Score = 32.9 bits (75), Expect = 0.059
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 17/73 (23%)
Query: 6 DRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRM 65
D + ++ L + +R V F + + G +Y +
Sbjct: 304 DSKQTFSPVLKLNAVLIRSVAT--DKRAFFIICTS---------------KLGPPQIYEL 346
Query: 66 SAATAEEKDEWIK 78
A T+ +K+ W++
Sbjct: 347 VALTSSDKNTWME 359
Score = 30.2 bits (68), Expect = 0.37
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 87 GKHTVYRMSAATAEEKDEWIKCLR 110
G +Y + A T+ +K+ W++ L
Sbjct: 339 GPPQIYELVALTSSDKNTWMELLE 362
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 31.8 bits (72), Expect = 0.11
Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 17/74 (22%)
Query: 5 DDRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYR 64
D + ++ L + +R V F + + G +Y
Sbjct: 345 SDSKQTFSPVLKLNAVLIRSV--ATDKRAFFIICTSKL---------------GPPQIYE 387
Query: 65 MSAATAEEKDEWIK 78
+ A T+ +K+ W++
Sbjct: 388 LVALTSSDKNTWME 401
Score = 30.3 bits (68), Expect = 0.43
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 87 GKHTVYRMSAATAEEKDEWIKCLR 110
G +Y + A T+ +K+ W++ L
Sbjct: 381 GPPQIYELVALTSSDKNTWMELLE 404
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH),
beta sandwich (PH), signaling protein; 2.13A {Homo
sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Length = 385
Score = 31.8 bits (72), Expect = 0.11
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 18/73 (24%)
Query: 6 DRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRM 65
D + +I L + VR+V +K + + + +Y +
Sbjct: 308 DSKHTFSPVIKLSTVLVRQVATDNKA--LFVISMS----------------DNGAQIYEL 349
Query: 66 SAATAEEKDEWIK 78
A T EK W
Sbjct: 350 VAQTVSEKTVWQD 362
Score = 28.7 bits (64), Expect = 1.2
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 86 EGKHTVYRMSAATAEEKDEWIKCLR 110
+ +Y + A T EK W +
Sbjct: 341 DNGAQIYELVAQTVSEKTVWQDLIC 365
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin,
peptidyl prolyl isomerase, ppiase, TLP,; 2.39A
{Arabidopsis thaliana}
Length = 369
Score = 31.9 bits (72), Expect = 0.11
Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELNNLLEPT 158
+ VFG+V ++ ++ ++ D + + ++VV + L NL P+
Sbjct: 326 YAVFGYVTDNEDFLADLK--VGDVI----ESIQVV--SGLENLANPS 364
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 32.0 bits (72), Expect = 0.13
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 18/78 (23%)
Query: 1 MDTGDDRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKH 60
+ D + R ++ L + REV HK F + + +
Sbjct: 458 LTPTPDGKTMLRPVLRLTSAMTREVATDHK---------AFYVLFT---------WDQEA 499
Query: 61 TVYRMSAATAEEKDEWIK 78
+Y + A T E+ W
Sbjct: 500 QIYELVAQTVSERKNWCA 517
Score = 30.0 bits (67), Expect = 0.43
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 86 EGKHTVYRMSAATAEEKDEWIKCLR 110
+ + +Y + A T E+ W +
Sbjct: 496 DQEAQIYELVAQTVSERKNWCALIT 520
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1;
guanine nucleotide exchange factor, guanine-nucleotide
releasing factor, lipoprotein; 4.50A {Mus musculus}
Length = 279
Score = 31.5 bits (70), Expect = 0.15
Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 20/74 (27%)
Query: 6 DRQVEPRGIIPLENIQVREVHDRH-KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYR 64
D P+ + +EN V+ V + K F L S +
Sbjct: 63 DHNSVPKHAVWVENSIVQAVPEHPKKDFVFCLSNSL-------------------GDAFL 103
Query: 65 MSAATAEEKDEWIK 78
+ E + WI
Sbjct: 104 FQTTSQTELENWIT 117
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin
homology domain, structural genomics; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 132
Score = 30.3 bits (68), Expect = 0.20
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 7/88 (7%)
Query: 23 REVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYSEG 82
E +R+ F LF+S + A S G + +GK + M + +
Sbjct: 42 EEKEERY----FLLFSSVLIMLSASPRMS-GFMYQGKIPIAGMVVNRLD--EIEGSDCMF 94
Query: 83 KVVEGKHTVYRMSAATAEEKDEWIKCLR 110
++ + ++ EW++ L
Sbjct: 95 EITGSTVERIVVHCNNNQDFQEWMEQLN 122
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 30.1 bits (67), Expect = 0.40
Identities = 11/83 (13%), Positives = 21/83 (25%), Gaps = 29/83 (34%)
Query: 5 DDRQVEPRGIIPLEN---------IQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKV 55
D RG + + + H PH + T +F+
Sbjct: 303 DPLDAFARGEVFIGSKESGYTVLHGFPPSTQGHHWPHGITIVTPDRKFL----------- 351
Query: 56 VEGKHTVYRMSAATAEEKDEWIK 78
+ T ++ EW+
Sbjct: 352 ---------FACETESDQREWVA 365
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 30.2 bits (68), Expect = 0.43
Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 18/73 (24%)
Query: 6 DRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRM 65
D + R ++ L + REV F + + + + +Y +
Sbjct: 310 DGKTMLRPVLRLTSAMTREVAT--DHKAFYVLFTW----------------DQEAQIYEL 351
Query: 66 SAATAEEKDEWIK 78
A T E+ W
Sbjct: 352 VAQTVSERKNWCA 364
Score = 29.1 bits (65), Expect = 1.0
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 86 EGKHTVYRMSAATAEEKDEWIKCLR 110
+ + +Y + A T E+ W +
Sbjct: 343 DQEAQIYELVAQTVSERKNWCALIT 367
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 30.1 bits (68), Expect = 0.45
Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 12 RGIIPLENIQVREVHD---RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAA 68
R IP++++ + ++ D R F++ + + H++ A
Sbjct: 273 RQPIPVKDLTLEDLQDGEVRLGGSLRGAFSNNERVKNFFRVSFKNGSQSQTHSLQ---AN 329
Query: 69 TAEEKDEWIK 78
K +W+
Sbjct: 330 DTFNKQQWLN 339
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 125
Score = 28.8 bits (64), Expect = 0.52
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 5 DDRQVEPRGIIPLENI-------QVREVHDRHKPHCFELFTSGFEF 43
++ IPL I V PHCFE+ T+ +
Sbjct: 41 NNTTNRYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEIVTANATY 86
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo
sapiens}
Length = 185
Score = 29.3 bits (65), Expect = 0.58
Identities = 15/102 (14%), Positives = 38/102 (37%), Gaps = 1/102 (0%)
Query: 10 EPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAAT 69
+ + ++ ++ ++ R K L T F++ ++ K TV +
Sbjct: 67 KRKKLVRDGSVFLKNAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLI 126
Query: 70 AEEKDEWIK-YSEGKVVEGKHTVYRMSAATAEEKDEWIKCLR 110
E K + + + A++ EE++ WI+ ++
Sbjct: 127 VREVAHEEKGLFLISMGMTDPEMVEVHASSKEERNSWIQIIQ 168
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase,
GTP-binding protein,, signaling protein; HET: GNP; 2.00A
{Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Length = 113
Score = 27.9 bits (62), Expect = 0.91
Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 21/68 (30%)
Query: 12 RGIIPLENIQVREVHD-RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATA 70
+ PL+ + V V D F+L I A A
Sbjct: 53 NALYPLDRLAVVNVKDNPPMKDMFKLLMFPESRI--------------------FQAENA 92
Query: 71 EEKDEWIK 78
+ K EW++
Sbjct: 93 KIKREWLE 100
Score = 27.5 bits (61), Expect = 1.6
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 95 SAATAEEKDEWIKCLR 110
A A+ K EW++ L
Sbjct: 88 QAENAKIKREWLEVLE 103
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 28.8 bits (64), Expect = 1.1
Identities = 9/67 (13%), Positives = 18/67 (26%), Gaps = 19/67 (28%)
Query: 12 RGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAE 71
+ I L + V+ D +F + VY +
Sbjct: 308 KTPIFLNEVLVKLPTD--PSSDEPVFH-----------------ISHIDRVYTLRTDNIN 348
Query: 72 EKDEWIK 78
E+ W++
Sbjct: 349 ERTAWVQ 355
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP:
b.55.1.1
Length = 122
Score = 28.0 bits (62), Expect = 1.1
Identities = 8/72 (11%), Positives = 17/72 (23%), Gaps = 20/72 (27%)
Query: 8 QVEPRGIIPLENIQVREVHDRHK-PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMS 66
L+N + D K H + + ++ +
Sbjct: 60 TFRGEPSYDLQNAAIEIASDYTKKKHVLRVKLAN-------------------GALFLLQ 100
Query: 67 AATAEEKDEWIK 78
A E +W+
Sbjct: 101 AHDDTEMSQWVT 112
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 1.5
Identities = 16/115 (13%), Positives = 37/115 (32%), Gaps = 29/115 (25%)
Query: 89 HTVYRMSAATAEEKDEWIKCLRVHVV-FGH-VVSGQNVVSH--IENLPVDKMSRPLQDVR 144
+ + + + D+ L + + F + + G ++ H L + + ++
Sbjct: 67 YVSSLVEPSKVGQFDQ---VLNLCLTEFENCYLEGNDI--HALAAKLLQENDTTLVKTKE 121
Query: 145 VVKC----NELNN----------LLEPTEMGVAQF--LYKGEGLNKTAIGDYLGE 183
++K + L G AQ ++ G+G DY E
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG----NTDDYFEE 172
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene
regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 1pms_A 1awe_A
Length = 354
Score = 28.4 bits (63), Expect = 1.6
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 22 VREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYR----MSAATAEEKDEWI 77
+ V +H+ H F LF K+ + M +KD+
Sbjct: 253 LTRVGAKHERHIF-LFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTN 311
Query: 78 KYSEG-KVVEGKHTVYRMSAATAEEKDEWIKCLR 110
+Y +++ SA +AEEK+ W+ L
Sbjct: 312 EYKHAFEIILKDENSVIFSAKSAEEKNNWMAALI 345
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus
musculus} SCOP: b.55.1.1 PDB: 1mph_A
Length = 106
Score = 27.2 bits (60), Expect = 1.6
Identities = 11/49 (22%), Positives = 14/49 (28%), Gaps = 19/49 (38%)
Query: 30 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIK 78
K H F+L S Y A EE + WI+
Sbjct: 72 KKHVFKLRLSDG-------------------NEYLFQAKDDEEMNTWIQ 101
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 2.6
Identities = 25/169 (14%), Positives = 56/169 (33%), Gaps = 47/169 (27%)
Query: 11 PRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAA-T 69
++ L N+Q + + C L T+ F+ + TD ++ S T
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV----TDFLSAATTTHISLDHHSMTLT 299
Query: 70 AEEKDEWIKYSEGKVVEGKHTVYRMSAATAEEKDEWIKCLRVHVVFGH--VVSG-----Q 122
+E + K ++ + + L V+ + +S +
Sbjct: 300 PDEVKSLL----LKYLDCR-----------------PQDLPREVLTTNPRRLSIIAESIR 338
Query: 123 NVVSHIENLP---VDKMSRPLQDVRVVKCNELNNLLEPTEMGVAQFLYK 168
+ ++ +N DK++ ++ LN LEP E + ++
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIE-----SS--LNV-LEPAEY---RKMFD 376
Score = 26.0 bits (56), Expect = 10.0
Identities = 23/183 (12%), Positives = 51/183 (27%), Gaps = 56/183 (30%)
Query: 24 EVHDRHKPHCFELFTSGFEFIKACKTDSEG----KVVE--GKHTVYRMSAATAEEKDEWI 77
+ + EL K ++E +V+ + D++
Sbjct: 427 SIPSIY----LEL---------KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 78 KYSEGKVVEGKHTVYRMSAATAEEKDE----------WI--KCLRVHVVFGHVVSGQNVV 125
YS H + + E+ ++ K + S N +
Sbjct: 474 -YS--------HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 126 -------SHI-ENLPVDKMSRPLQDVR--VVKCNELNNLLEPTEMGVAQ--FLYKGEGLN 173
+I +N P R + + + K E NL+ + + + + E +
Sbjct: 525 QQLKFYKPYICDNDPKY--ERLVNAILDFLPKIEE--NLICSKYTDLLRIALMAEDEAIF 580
Query: 174 KTA 176
+ A
Sbjct: 581 EEA 583
>3bos_A Putative DNA replication factor; P-loop containing nucleoside
triphosphate hydrolases, struct genomics; HET: MSE CDP;
1.75A {Shewanella amazonensis} PDB: 3sc3_A
Length = 242
Score = 26.4 bits (59), Expect = 5.8
Identities = 4/27 (14%), Positives = 7/27 (25%), Gaps = 4/27 (14%)
Query: 165 FLYKGEGLNKT----AIGDYLGERHDF 187
+L+ +T A E
Sbjct: 56 YLWGPVKSGRTHLIHAACARANELERR 82
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 117
Score = 25.8 bits (56), Expect = 5.9
Identities = 5/34 (14%), Positives = 11/34 (32%)
Query: 77 IKYSEGKVVEGKHTVYRMSAATAEEKDEWIKCLR 110
+ + A + EE+ +W+ L
Sbjct: 78 FQILYANEGISSAKNLLLLANSTEEQQKWVSRLV 111
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics,
PSI-2, protein ST initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.76A {Vibrio
fischeri}
Length = 185
Score = 26.1 bits (56), Expect = 5.9
Identities = 12/80 (15%), Positives = 19/80 (23%), Gaps = 2/80 (2%)
Query: 4 GDDRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSE--GKVVEGKHT 61
G +V + V EV HC + + TD
Sbjct: 8 GVQYEVLSTSLENDGMAPVTEVFALSCGHCRNMENFLPVISQEAGTDIGKMHITFNQSAH 67
Query: 62 VYRMSAATAEEKDEWIKYSE 81
+ M AE + +
Sbjct: 68 IASMFYYAAEMQVDGAPDHA 87
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain
III (ATPase domain), ATP-binding, cytoplasm, DNA
replication; HET: ADP; 3.00A {Thermotoga maritima} PDB:
2z4r_A*
Length = 440
Score = 26.5 bits (59), Expect = 6.3
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 165 FLYKGEGLNKT----AIGDYLGERHDFNEKVR 192
F+Y G GL KT +IG+Y+ + + +V
Sbjct: 134 FIYGGVGLGKTHLLQSIGNYVVQNEP-DLRVM 164
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease
mutation, guanine-nucleotide releasing factor, signaling
protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Length = 1049
Score = 26.7 bits (58), Expect = 6.4
Identities = 24/167 (14%), Positives = 50/167 (29%), Gaps = 10/167 (5%)
Query: 22 VREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYSE 81
+ V +H+ H F LF K + ++ + YR+ K + +
Sbjct: 450 LTRVGAKHERHIF-LFDGLMICCK--SNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDD 506
Query: 82 G-------KVVEGKHTVYRMSAATAEEKDEWIKCLRVHVVFGHVVSGQNVVSHIENLPVD 134
+++ SA +AEEK+ W+ L + +V E
Sbjct: 507 TNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYRSTLERMLDVTMLQEEKEEQ 566
Query: 135 KMSRPLQDVRVVKCNELNNLLEPTEMGVAQFLYKGEGLNKTAIGDYL 181
R + + N++ M + + + + L
Sbjct: 567 MRLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERL 613
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2;
hydrolase, phospholipase C, phosphoinositides, RHO
gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens}
PDB: 2w2w_A* 2w2x_C* 2k2j_A
Length = 124
Score = 25.5 bits (55), Expect = 8.6
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 86 EGKHTVYRMSAATAEEKDEWIKCLR 110
+ + EE EW + +R
Sbjct: 91 QQGDPPVEFATDKVEELFEWFQSIR 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.402
Gapped
Lambda K H
0.267 0.0509 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,953,042
Number of extensions: 162996
Number of successful extensions: 573
Number of sequences better than 10.0: 1
Number of HSP's gapped: 489
Number of HSP's successfully gapped: 188
Length of query: 194
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 106
Effective length of database: 4,244,745
Effective search space: 449942970
Effective search space used: 449942970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.5 bits)