RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17821
(194 letters)
>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 127
Score = 60.7 bits (146), Expect = 7e-13
Identities = 43/76 (56%), Positives = 56/76 (73%), Gaps = 2/76 (2%)
Query: 5 DDRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSG--FEFIKACKTDSEGKVVEGKHTV 62
EPRGIIPLEN+ +REV D KP+CFEL+ + IKACKT+++G+VVEG H V
Sbjct: 38 YTTDKEPRGIIPLENLSIREVLDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVV 97
Query: 63 YRMSAATAEEKDEWIK 78
YR+SA + EEK+EW+K
Sbjct: 98 YRISAPSPEEKEEWMK 113
>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8
(ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 58.4 bits (140), Expect = 5e-12
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 5 DDRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFI---KACKTDSEGKVVEGKHT 61
+ + G + L ++ E + CF+LF + I K K ++ G + + +
Sbjct: 40 TQKNGQWVGTVLLNACEIIERPSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPS 99
Query: 62 VYR-MSAATAEEKDEWIK 78
Y + A + + W+
Sbjct: 100 SYLIIRATSESDGRCWMD 117
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo
sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20
[TaxId: 9606]}
Length = 173
Score = 49.9 bits (118), Expect = 2e-08
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG ++ G V+ IEN+P ++P V + +C E+
Sbjct: 134 HVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 173
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia
malayi) [TaxId: 6279]}
Length = 174
Score = 47.5 bits (112), Expect = 1e-07
Identities = 23/40 (57%), Positives = 28/40 (70%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG VVSGQ VV+ IE L + +RPL DV ++ C EL
Sbjct: 134 HVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 173
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus
musculus), variant C [TaxId: 10090]}
Length = 182
Score = 46.7 bits (110), Expect = 2e-07
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG V+ G VV IE D RPL D +V ++
Sbjct: 130 HVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKI 169
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi
[TaxId: 5693]}
Length = 166
Score = 46.4 bits (109), Expect = 2e-07
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG VV G +VV +EN +P + V++ C L
Sbjct: 127 HVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 5 [TaxId: 6239]}
Length = 182
Score = 45.6 bits (107), Expect = 6e-07
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG ++ G +VV IE RP QDV + +
Sbjct: 129 HVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHI 168
>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens)
[TaxId: 9606]}
Length = 187
Score = 45.6 bits (108), Expect = 6e-07
Identities = 27/41 (65%), Positives = 31/41 (75%)
Query: 152 NNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKVR 192
N LL+ T +A+FLYKGEGLNKTAIGDYLGER + N V
Sbjct: 25 NELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVL 65
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w
{Plasmodium falciparum [TaxId: 5833]}
Length = 155
Score = 44.2 bits (103), Expect = 1e-06
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 103 DEWIKCLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKC 148
H VFG V G +V IE + DK +PL+D++++
Sbjct: 107 VPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNI 152
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium
yoelii [TaxId: 5861]}
Length = 186
Score = 44.5 bits (104), Expect = 1e-06
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 112 HVVFGHVVSGQ--NVVSHIENLPVD-KMSRPLQDVRVVKCNEL 151
+VVFG ++ ++ IEN+ V + +P + VV+C EL
Sbjct: 144 NVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 186
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like
1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 166
Score = 44.3 bits (104), Expect = 1e-06
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 105 WIKCLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVK 147
H +FG V G +V+ + + + RP+ DV+++K
Sbjct: 119 TQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIK 161
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans
isomerase, cyclophilin F {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 43.7 bits (102), Expect = 2e-06
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 103 DEWIKCLRVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELN 152
+ HVVFGHV+ G +VV IE+ K R + + + C +L+
Sbjct: 116 IKTDWLDGKHVVFGHVIEGMDVVKKIESFG-SKSGRTSKKIVITDCGQLS 164
>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 116
Score = 43.0 bits (100), Expect = 2e-06
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 10/74 (13%)
Query: 5 DDRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYR 64
+ P G L V + D P + + KV+ T Y
Sbjct: 47 SKEENRPVGGFSLRGSLVSALEDNGVPTGVKG----------NVQGNLFKVITKDDTHYY 96
Query: 65 MSAATAEEKDEWIK 78
+ A++ E+ EWI+
Sbjct: 97 IQASSKAERAEWIE 110
Score = 35.6 bits (81), Expect = 8e-04
Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 5/86 (5%)
Query: 30 KPHCFELFTSGFEFIKACKTDSEGKV-----VEGKHTVYRMSAATAEEKDEWIKYSEGKV 84
K F L + E + + G ++ + KV
Sbjct: 28 KVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKV 87
Query: 85 VEGKHTVYRMSAATAEEKDEWIKCLR 110
+ T Y + A++ E+ EWI+ ++
Sbjct: 88 ITKDDTHYYIQASSKAERAEWIEAIK 113
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow
(Bos taurus) [TaxId: 9913]}
Length = 195
Score = 44.1 bits (103), Expect = 2e-06
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG V+ G V +EN+ V +P + + +C EL
Sbjct: 145 HVVFGQVIKGMGVAKILENVEVK-GEKPAKLCVIAECGEL 183
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 3 [TaxId: 6239]}
Length = 172
Score = 43.3 bits (101), Expect = 3e-06
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG VV G +VV +E+ + +P++D + C +L
Sbjct: 133 HVVFGRVVEGLDVVKAVESNG-SQSGKPVKDCMIADCGQL 171
>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella
pneumophila [TaxId: 446]}
Length = 197
Score = 41.8 bits (98), Expect = 1e-05
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 152 NNLLEPTEMGVAQFLYKG-EGLNKTAIGDYLGERHDFNEKVR 192
+A+F ++ + L+ A+GDYL N++V
Sbjct: 32 EQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQVL 73
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693
{Plasmodium yoelii [TaxId: 5861]}
Length = 169
Score = 41.4 bits (96), Expect = 1e-05
Identities = 6/37 (16%), Positives = 19/37 (51%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKC 148
H +F V + +I ++ ++P+ D+++++
Sbjct: 131 HTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRT 167
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium
falciparum [TaxId: 5833]}
Length = 170
Score = 41.0 bits (95), Expect = 2e-05
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 151
HVVFG V+ G NVV +E + V + C EL
Sbjct: 132 HVVFGKVIEGMNVVREMEKEGAKS-GYVKRSVVITDCGEL 170
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl
cis-trans isomerase, cyclophilin F {Human (Homo sapiens)
[TaxId: 9606]}
Length = 161
Score = 40.3 bits (93), Expect = 3e-05
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNE 150
HVVFG V G +V+ IE K +P Q V + C E
Sbjct: 124 HVVFGEVTEGLDVLRQIEAQG-SKDGKPKQKVIIADCGE 161
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 166
Score = 39.2 bits (90), Expect = 7e-05
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMS----RPLQDVRVVKCNEL 151
+ VFG VV G +V I +P + P + V ++ L
Sbjct: 122 YAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVL 165
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6
{Malassezia sympodialis [TaxId: 76777]}
Length = 162
Score = 38.9 bits (90), Expect = 1e-04
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKC 148
HVVFG V+ G NVV IE +P + + KC
Sbjct: 124 HVVFGEVIDGMNVVKAIEAEG-SGSGKPRSRIEIAKC 159
>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 37.6 bits (86), Expect = 1e-04
Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 15/77 (19%)
Query: 5 DDRQVEPRGIIPLENIQVREVHD---RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHT 61
D+ +P+G + L ++E+ FE+ + ++ +
Sbjct: 41 DEEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRM------------GQD 88
Query: 62 VYRMSAATAEEKDEWIK 78
Y + A++ E +EW+K
Sbjct: 89 SYVLMASSQAEMEEWVK 105
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans
isomerase-like 2, Cyclophilin-60, PPI domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 37.8 bits (87), Expect = 3e-04
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVDKMS-RPLQDVRVVKCNELNNLLEPTEMGVAQ 164
H +FG VV G +V++ +EN+ D + RP +++R+ + E + +AQ
Sbjct: 115 HTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVFVDPYEEADAQIAQ 168
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 159
Score = 37.1 bits (85), Expect = 4e-04
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVD-KMSRPLQDVRVVKCNELNN 153
+ VFG V+ G + +E LPV+ K RPL DV + N
Sbjct: 115 YTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHAN 157
>d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 211
Score = 37.2 bits (86), Expect = 4e-04
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 150 ELNNLLEPTEMGVAQFLYKGEG-LNKTAIGDYLGERHDFN 188
E + ++ +A+FL+ +NK IG L +
Sbjct: 35 EKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPDKVS 74
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 171
Score = 36.4 bits (83), Expect = 8e-04
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 112 HVVFGHVVS--GQNVVSHIENLPVDKMSRPLQDVRVVKC 148
H +FG V+ Q VV I D RP V +
Sbjct: 130 HTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESI 168
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD
repeat-containing protein 1, PPWD1, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 164
Score = 35.7 bits (81), Expect = 0.001
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 112 HVVFGHVVSGQNVVSHIENLPVD-KMSRPLQDVRVVKC 148
H VFG V G VV I N+ V+ K +P +DV ++
Sbjct: 124 HTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINI 161
>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 209
Score = 35.3 bits (80), Expect = 0.002
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 23/78 (29%)
Query: 5 DDRQVEPRGIIPLENIQVREV----HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKH 60
D+ + +G ++ VR D K CFE+
Sbjct: 141 SDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPD-------------------K 181
Query: 61 TVYRMSAATAEEKDEWIK 78
+Y+ +AA+ ++ +EW++
Sbjct: 182 RIYQFTAASPKDAEEWVQ 199
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 164
Score = 33.7 bits (76), Expect = 0.006
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 110 RVHVVFGHVVSGQNVVSHIENLPVDKMS----RPLQDVRVVKC 148
+ VF VV G + V I+ + + P +DV +
Sbjct: 118 WGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESV 160
>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange
factor 12 {Human (Homo sapiens), gamma isoform [TaxId:
9606]}
Length = 114
Score = 32.7 bits (74), Expect = 0.007
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 18/67 (26%)
Query: 12 RGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAE 71
+I L + VR+V + F + S +Y + A T
Sbjct: 58 SPVIKLSTVLVRQVATDN-KALFVISMSDNGA-----------------QIYELVAQTVS 99
Query: 72 EKDEWIK 78
EK W
Sbjct: 100 EKTVWQD 106
Score = 27.7 bits (61), Expect = 0.44
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 91 VYRMSAATAEEKDEWIKCLR 110
+Y + A T EK W +
Sbjct: 90 IYELVAQTVSEKTVWQDLIC 109
>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 32.7 bits (74), Expect = 0.010
Identities = 12/91 (13%), Positives = 22/91 (24%), Gaps = 5/91 (5%)
Query: 25 VHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSA-----ATAEEKDEWIKY 79
LF K+ + ++ D
Sbjct: 35 RVGAKHERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTNEYK 94
Query: 80 SEGKVVEGKHTVYRMSAATAEEKDEWIKCLR 110
+++ SA +AEEK+ W+ L
Sbjct: 95 HAFEIILKDENSVIFSAKSAEEKNNWMAALI 125
>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein
APS {Mouse (Mus musculus) [TaxId: 10090]}
Length = 136
Score = 32.5 bits (73), Expect = 0.012
Identities = 11/78 (14%), Positives = 18/78 (23%), Gaps = 23/78 (29%)
Query: 5 DDRQVEPRGIIPLENIQVREVHDRH----KPHCFELFTSGFEFIKACKTDSEGKVVEGKH 60
+ P+ IPL I K + F L
Sbjct: 65 PPKASRPKVSIPLSAIIEVRTTMPLEMPEKDNTFVLKVEN-------------------G 105
Query: 61 TVYRMSAATAEEKDEWIK 78
Y + + +K W+
Sbjct: 106 AEYILETIDSLQKHSWVA 123
Score = 29.0 bits (64), Expect = 0.22
Identities = 3/28 (10%), Positives = 10/28 (35%)
Query: 83 KVVEGKHTVYRMSAATAEEKDEWIKCLR 110
+ Y + + +K W+ ++
Sbjct: 99 VLKVENGAEYILETIDSLQKHSWVADIQ 126
>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange
factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId:
9606]}
Length = 140
Score = 31.6 bits (71), Expect = 0.029
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 17/73 (23%)
Query: 6 DRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRM 65
D + ++ L + +R V F + + G +Y +
Sbjct: 76 DSKQTFSPVLKLNAVLIRSV--ATDKRAFFIICTS---------------KLGPPQIYEL 118
Query: 66 SAATAEEKDEWIK 78
A T+ +K+ W++
Sbjct: 119 VALTSSDKNTWME 131
Score = 30.4 bits (68), Expect = 0.061
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 87 GKHTVYRMSAATAEEKDEWIKCLR 110
G +Y + A T+ +K+ W++ L
Sbjct: 111 GPPQIYELVALTSSDKNTWMELLE 134
>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}
Length = 111
Score = 31.1 bits (69), Expect = 0.033
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 76 WIKYSEGKVVEGKHTVYRMSAATAEEKDEWIKCLRVHVVF 115
+ +E + V + ++ T EE D W V+
Sbjct: 70 ALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVY 109
Score = 28.0 bits (61), Expect = 0.34
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 14/76 (18%)
Query: 5 DDRQVEPRGIIPLENIQVREVH--DRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTV 62
DD + E + ++ ++N+++R+V H F LF + + +
Sbjct: 38 DDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVY------------KDYRQ 85
Query: 63 YRMSAATAEEKDEWIK 78
++ T EE D W
Sbjct: 86 LELACETQEEVDSWKA 101
>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein
TRIO {Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 29.9 bits (67), Expect = 0.076
Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 5/82 (6%)
Query: 32 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYSEG---KVVEGK 88
H F LF F K DS G+ + S E E
Sbjct: 35 HLF-LFEMSLVFSKE-VKDSSGRSKYLYKSKLFTSELGVTEHVEGDPCKFALWVGRTPTS 92
Query: 89 HTVYRMSAATAEEKDEWIKCLR 110
+ A++ E K +WIK +R
Sbjct: 93 DNKIVLKASSIENKQDWIKHIR 114
>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor
9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 162
Score = 29.7 bits (66), Expect = 0.15
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 9/92 (9%)
Query: 24 EVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAE-----EKDEWIK 78
R F LF K + +G+ + + E + + +K
Sbjct: 42 RNQQRV----FFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMK 97
Query: 79 YSEGKVVEGKHTVYRMSAATAEEKDEWIKCLR 110
+ + V+ A EEK W++ R
Sbjct: 98 NAFKLHNKETEEVHLFFAKKLEEKIRWLRAFR 129
>d1xdpa3 d.136.1.4 (A:315-501) Polyphosphate kinase, PPK
{Escherichia coli [TaxId: 562]}
Length = 187
Score = 29.4 bits (66), Expect = 0.20
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 32 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMS 66
+ + F E ++ D V+ K +YR++
Sbjct: 31 YPYHTFEHVLELLRQASFDP--SVLAIKINIYRVA 63
>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 132
Score = 28.5 bits (63), Expect = 0.25
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 26 HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYSEGKVV 85
+ + F LF+S + A G + +GK + M +E + E
Sbjct: 41 CEEKEERYFLLFSSVLIMLSA-SPRMSGFMYQGKIPIAGMVVNRLDEIEGSDCMFEITGS 99
Query: 86 EGKHTVYRMSAATAEEKDEWIKCLR 110
+ + ++ EW++ L
Sbjct: 100 TVER--IVVHCNNNQDFQEWMEQLN 122
>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 109
Score = 28.5 bits (63), Expect = 0.26
Identities = 10/83 (12%), Positives = 23/83 (27%), Gaps = 4/83 (4%)
Query: 28 RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYSEGKVVEG 87
+ H F L + + + + +Y + + + +
Sbjct: 21 LQRVHGF-LMNDCLLV---ATWLPQRRGMYRYNALYPLDRLAVVNVKDNPPMKDMFKLLM 76
Query: 88 KHTVYRMSAATAEEKDEWIKCLR 110
A A+ K EW++ L
Sbjct: 77 FPESRIFQAENAKIKREWLEVLE 99
>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 147
Score = 28.9 bits (64), Expect = 0.26
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 32 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKYSEGK---VVEGK 88
H F L F K + + EG ++ + TA E +K K +
Sbjct: 44 HLF-LHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITENVKGDTKKFEIWYNAR 102
Query: 89 HTVYRMSAATAEEKDEWIKCLR 110
VY + A T E K W+ +R
Sbjct: 103 EEVYIIQAPTPEIKAAWVNAIR 124
>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing
protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 99
Score = 28.0 bits (61), Expect = 0.29
Identities = 7/61 (11%), Positives = 18/61 (29%), Gaps = 20/61 (32%)
Query: 18 ENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWI 77
+ H ++L + +SA++AE + +W+
Sbjct: 52 KLSVPDPEERLDSGHVWKLQW--------------------AKQSWYLSASSAELQQQWL 91
Query: 78 K 78
+
Sbjct: 92 E 92
>d2esha1 a.4.5.61 (A:4-117) Hypothetical protein TM0937 {Thermotoga
maritima [TaxId: 2336]}
Length = 114
Score = 28.0 bits (62), Expect = 0.32
Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 3/73 (4%)
Query: 39 SGFEFIKACKTDSEGKVVEGKH-TVYRMSAATAEEKDEWIKYSEGKVVEGKHTVYRMSAA 97
G+E + G +YR E+ ++ V +YR++
Sbjct: 25 HGYELAERLAEFGIEIPGIGHMGNIYR--VLADLEESGFLSTEWDTTVSPPRKIYRITPQ 82
Query: 98 TAEEKDEWIKCLR 110
E ++ L
Sbjct: 83 GKLYLREILRSLE 95
>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 142
Score = 25.9 bits (56), Expect = 2.3
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 91 VYRMSAATAEEKDEWIKCLR 110
VY + A + E+ W++ ++
Sbjct: 109 VYTLRAESINERTAWVQKIK 128
Score = 25.2 bits (54), Expect = 4.5
Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 19/76 (25%)
Query: 3 TGDDRQVEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTV 62
+ Q + I L + V+ D G E I V
Sbjct: 69 PKSNLQYMYKTPIFLNEVLVKLPTDPS----------GDEPIFHISHIDR---------V 109
Query: 63 YRMSAATAEEKDEWIK 78
Y + A + E+ W++
Sbjct: 110 YTLRAESINERTAWVQ 125
>d2o8ra3 d.136.1.4 (A:318-505) Polyphosphate kinase, PPK
{Porphyromonas gingivalis [TaxId: 837]}
Length = 188
Score = 26.3 bits (58), Expect = 2.3
Identities = 5/35 (14%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 32 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMS 66
+ + + V E + T YR++
Sbjct: 30 VPYYTYDYVVRLLMEAAISP--DVSEIRLTQYRVA 62
>d2iqha1 e.75.1.1 (A:21-489) Nucleocapsid protein {Influenza A
virus [TaxId: 11320]}
Length = 469
Score = 25.3 bits (55), Expect = 5.8
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 12/69 (17%)
Query: 40 GFEFIKACK----TDSEGKVVEGKHTVYRMSAATAEEKDEWIKYSEGKVVEGKH------ 89
G +I+ C +D EG++++ T+ RM + +E+ KY E GK
Sbjct: 17 GRFYIQMCTELKLSDYEGRLIQNSLTIERMVLSAFDERRN--KYLEEHPSAGKDPKKTGG 74
Query: 90 TVYRMSAAT 98
+YR
Sbjct: 75 PIYRRVDGK 83
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein
1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 25.5 bits (54), Expect = 6.6
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 127 HIENLPVDKMSRPLQDVRVVKCNELNNLLE 156
HI NL ++KM+ +D R + N+L L+
Sbjct: 4 HISNL-LEKMTSSDKDFRFMATNDLMTELQ 32
>d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 105
Score = 24.1 bits (52), Expect = 7.2
Identities = 6/27 (22%), Positives = 7/27 (25%), Gaps = 1/27 (3%)
Query: 24 EVHDRHKPHC-FELFTSGFEFIKACKT 49
E H C F G +I
Sbjct: 68 EQHALWLSQCRFVKLMKGQLYIDTVAA 94
>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo
sapiens) [TaxId: 9606]}
Length = 96
Score = 24.0 bits (52), Expect = 7.6
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 24 EVHDRHKPHC-FELFTSGFEFIK 45
E H + P C + L G E+I
Sbjct: 69 EQHAKWYPGCKYLLEQKGQEYIN 91
>d1foea2 b.55.1.1 (A:1240-1401) GEF of TIAM1 (T-Lymphoma invasion
and metastasis inducing protein 1) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 162
Score = 24.4 bits (53), Expect = 7.8
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
Query: 12 RGIIPLENIQVRE--VHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAAT 69
R +IP E +QVR D E+ K++SEG+ V+ + ++
Sbjct: 93 RHMIPTEALQVRALPSADAEANAVCEIVHV--------KSESEGR----PERVFHLCCSS 140
Query: 70 AEEKDEWIK 78
E + +++K
Sbjct: 141 PESRKDFLK 149
>d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli
[TaxId: 562]}
Length = 417
Score = 24.9 bits (53), Expect = 8.6
Identities = 5/11 (45%), Positives = 9/11 (81%)
Query: 136 MSRPLQDVRVV 146
+S PLQ ++V+
Sbjct: 1 LSTPLQGIKVL 11
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.402
Gapped
Lambda K H
0.267 0.0476 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 719,735
Number of extensions: 31436
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 60
Length of query: 194
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 113
Effective length of database: 1,295,466
Effective search space: 146387658
Effective search space used: 146387658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.7 bits)