Query psy17822
Match_columns 91
No_of_seqs 120 out of 602
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 23:55:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ltl_A Brefeldin A-inhibited g 99.8 3.3E-20 1.1E-24 133.5 4.4 76 1-82 31-106 (211)
2 1r8s_E ARNO; protein transport 99.8 8.4E-20 2.9E-24 130.7 4.3 76 1-82 25-100 (203)
3 2r09_A Cytohesin-3; autoinhibi 99.7 2.6E-18 8.9E-23 129.6 3.8 76 1-82 27-102 (347)
4 1ku1_A ARF guanine-nucleotide 99.7 5.3E-17 1.8E-21 118.0 5.2 74 1-82 36-111 (230)
5 1xsz_A Guanine nucleotide exch 99.5 2.1E-15 7.1E-20 115.4 1.7 76 1-82 20-98 (356)
6 3ltl_A Brefeldin A-inhibited g 98.2 3.5E-07 1.2E-11 65.6 2.0 40 50-89 41-80 (211)
7 1r8s_E ARNO; protein transport 98.2 6.1E-07 2.1E-11 64.0 2.0 38 52-89 37-74 (203)
8 2r09_A Cytohesin-3; autoinhibi 97.9 3.1E-06 1.1E-10 63.5 1.8 39 52-90 39-77 (347)
9 1xsz_A Guanine nucleotide exch 97.2 8.2E-05 2.8E-09 56.9 1.3 32 58-89 40-72 (356)
10 1ku1_A ARF guanine-nucleotide 97.0 0.00028 9.6E-09 51.0 2.3 34 53-86 49-84 (230)
11 1j1v_A Chromosomal replication 68.8 2.7 9.2E-05 25.7 2.0 32 20-51 33-65 (94)
12 3pvv_A Chromosomal replication 67.9 2.8 9.5E-05 26.1 1.9 32 19-51 36-68 (101)
13 4fp9_B Mterf domain-containing 61.4 13 0.00044 27.6 4.8 35 2-39 45-79 (335)
14 1j9i_A GPNU1 DBD;, terminase s 44.2 18 0.00061 20.0 2.5 48 19-70 4-54 (68)
15 3mva_O Transcription terminati 42.5 42 0.0015 24.2 5.0 29 19-48 50-78 (343)
16 2k7r_A Primosomal protein DNAI 42.3 17 0.00058 22.3 2.4 26 18-44 30-56 (106)
17 3tdu_C Cullin-1, CUL-1; E2:E3, 39.6 4.1 0.00014 24.3 -0.8 17 4-20 51-67 (77)
18 2g0c_A ATP-dependent RNA helic 38.7 18 0.00061 20.4 2.0 22 19-40 14-35 (76)
19 2kp6_A Uncharacterized protein 38.1 25 0.00086 21.3 2.6 31 4-35 8-38 (82)
20 3pbp_C Nucleoporin NUP159; bet 33.0 11 0.00037 19.6 0.3 11 35-45 22-32 (36)
21 3nrw_A Phage integrase/site-sp 31.4 51 0.0018 19.3 3.3 35 8-42 41-80 (117)
22 2do7_A Cullin-4B, CUL-4B; heli 27.7 18 0.0006 22.6 0.7 18 4-21 69-86 (101)
23 2hgc_A YJCQ protein; SR346, st 26.7 24 0.00084 22.0 1.2 15 4-18 67-81 (102)
24 3cxn_A Urease accessory protei 25.4 62 0.0021 23.3 3.3 25 4-29 71-95 (274)
25 1kw4_A Polyhomeotic; SAM domai 23.9 46 0.0016 19.8 2.1 15 19-33 18-32 (89)
26 3go5_A Multidomain protein wit 22.9 19 0.00065 26.1 0.2 40 6-45 229-273 (285)
27 3v68_A PF2050 protein, putativ 22.1 29 0.00099 25.0 1.0 34 53-86 20-53 (252)
No 1
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=99.79 E-value=3.3e-20 Score=133.54 Aligned_cols=76 Identities=32% Similarity=0.563 Sum_probs=64.8
Q ss_pred CChhhHHHHHHHCCCCCCChHHHHHHHhhCCCCChhhhhhhccccccchhhccccCCchhhHHHHhhhCcCCchhhhhhh
Q psy17822 1 MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIGDY 80 (91)
Q Consensus 1 ~~PkkGi~~l~~~g~l~~~p~~ia~Fl~~~~~L~k~~iGeyLg~~~~fn~~~~l~~~~~~~Ir~FL~~~~~ld~~~ig~y 80 (91)
+||++||+||+++|+|+++|.+||+||+++++|||++||+|||++++||.++ ..+.|..|.+++..||. |+|.|
T Consensus 31 ~~PkkGi~~L~~~g~i~~~p~~iA~FL~~~~~L~k~~igeyLg~~~~fn~~v-----L~~yv~~fdF~~~~ld~-ALR~f 104 (211)
T 3ltl_A 31 KKPKRGIQYLQEQGMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDKFNKEV-----MYAYVDQHDFSGKDFVS-ALRMF 104 (211)
T ss_dssp HCHHHHHHHHHHTTSSCSSHHHHHHHHHHCTTSCHHHHHHHHTCCSHHHHHH-----HHHHHHTSCCCSSCHHH-HHHHH
T ss_pred cCHHHHHHHHHHcCCCCCCHHHHHHHHHhCcCccHHHHHHHHhccchhHHHH-----HHHHHHhcCCCCCCHHH-HHHHH
Confidence 4899999999999999999999999999999999999999999999999886 45566666666666664 66666
Q ss_pred cc
Q psy17822 81 LG 82 (91)
Q Consensus 81 Lg 82 (91)
|.
T Consensus 105 L~ 106 (211)
T 3ltl_A 105 LE 106 (211)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 2
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=99.78 E-value=8.4e-20 Score=130.75 Aligned_cols=76 Identities=50% Similarity=0.771 Sum_probs=65.2
Q ss_pred CChhhHHHHHHHCCCCCCChHHHHHHHhhCCCCChhhhhhhccccccchhhccccCCchhhHHHHhhhCcCCchhhhhhh
Q psy17822 1 MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIGDY 80 (91)
Q Consensus 1 ~~PkkGi~~l~~~g~l~~~p~~ia~Fl~~~~~L~k~~iGeyLg~~~~fn~~~~l~~~~~~~Ir~FL~~~~~ld~~~ig~y 80 (91)
+||++||+||+++|+|+++|++||+||+.+++|+|++||+|||++++||.++ ..+.+..|.+++..||. |+|.|
T Consensus 25 ~~PkkGi~~L~~~~~l~~~p~~iA~fL~~~~~l~k~~igeyLg~~~~~n~~v-----l~~y~~~fdF~~~~ld~-ALR~f 98 (203)
T 1r8s_E 25 MDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAV-----LHAFVDLHEFTDLNLVQ-ALRQF 98 (203)
T ss_dssp HCHHHHHHHHHHTTSSCSSHHHHHHHHHHCTTCCHHHHHHHHTCCSHHHHHH-----HHHHHHTCCCTTCCHHH-HHHHH
T ss_pred hCHHHHHHHHHHCCCCCCCHHHHHHHHHHCcCcCHHHHHHHHhccchHHHHH-----HHHHHHhcCCCCCcHHH-HHHHH
Confidence 4899999999999999999999999999999999999999999999999886 45566666666666664 66666
Q ss_pred cc
Q psy17822 81 LG 82 (91)
Q Consensus 81 Lg 82 (91)
|.
T Consensus 99 L~ 100 (203)
T 1r8s_E 99 LW 100 (203)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 3
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=99.71 E-value=2.6e-18 Score=129.58 Aligned_cols=76 Identities=55% Similarity=0.834 Sum_probs=65.4
Q ss_pred CChhhHHHHHHHCCCCCCChHHHHHHHhhCCCCChhhhhhhccccccchhhccccCCchhhHHHHhhhCcCCchhhhhhh
Q psy17822 1 MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIGDY 80 (91)
Q Consensus 1 ~~PkkGi~~l~~~g~l~~~p~~ia~Fl~~~~~L~k~~iGeyLg~~~~fn~~~~l~~~~~~~Ir~FL~~~~~ld~~~ig~y 80 (91)
++|++||+||+++|+|+++|++||+||+.+++|+|++||+|||++++||.++ ..+.+..|.+++..||. |++.|
T Consensus 27 ~~p~~gi~~l~~~~~~~~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~v-----l~~~~~~~~f~~~~~~~-alR~~ 100 (347)
T 2r09_A 27 MDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIKV-----LQAFVELHEFADLNLVQ-ALRQF 100 (347)
T ss_dssp HCHHHHHHHHHHTTSSCCSHHHHHHHHHHCTTCCHHHHHHHHHCCSHHHHHH-----HHHHHHTSCCTTCCHHH-HHHHH
T ss_pred hCHHHHHHHHHHCCCCCCCHHHHHHHHHhCcCcCHHHHHHHhcCCCchHHHH-----HHHHHHhcCcCCCCHHH-HHHHH
Confidence 4899999999999999999999999999999999999999999999999886 45566666666666664 66666
Q ss_pred cc
Q psy17822 81 LG 82 (91)
Q Consensus 81 Lg 82 (91)
|.
T Consensus 101 l~ 102 (347)
T 2r09_A 101 LW 102 (347)
T ss_dssp TT
T ss_pred HH
Confidence 64
No 4
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=99.66 E-value=5.3e-17 Score=118.04 Aligned_cols=74 Identities=27% Similarity=0.430 Sum_probs=61.2
Q ss_pred CChhhHHHHHHHCCCCCC-ChHHHHHHHhhC-CCCChhhhhhhccccccchhhccccCCchhhHHHHhhhCcCCchhhhh
Q psy17822 1 MDPKKGIEWLIQNNLLEP-TEMGVAQFLYKG-EGLNKTAIGDYLGERHDFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIG 78 (91)
Q Consensus 1 ~~PkkGi~~l~~~g~l~~-~p~~ia~Fl~~~-~~L~k~~iGeyLg~~~~fn~~~~l~~~~~~~Ir~FL~~~~~ld~~~ig 78 (91)
++||+||+||+++|+|++ +|.+||+||+.+ ++|||++||+|||++. |.++ ..+++..|.+++..||. |+|
T Consensus 36 ~~PkkGI~~L~~~g~l~~~~~~~iA~fL~~~~~~L~k~~iGeyLg~~~--n~~v-----L~~yv~~fdF~g~~ld~-ALR 107 (230)
T 1ku1_A 36 EKPKKGIPMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPD--KVSL-----LNEYIRLFDFSGLRVDE-AIR 107 (230)
T ss_dssp HCHHHHHHHHHHTTSSSCSSHHHHHHHHHHTTTTSCHHHHHHHHTCGG--GHHH-----HHHHHHTSCCTTCCHHH-HHH
T ss_pred cCHHHHHHHHHHCCCcCCCCHHHHHHHHHHcCcccCHHHHHHHHcCcc--HHHH-----HHHHHhhccCCCCCHHH-HHH
Confidence 489999999999999986 899999999875 5799999999999866 4443 36677777777777775 777
Q ss_pred hhcc
Q psy17822 79 DYLG 82 (91)
Q Consensus 79 ~yLg 82 (91)
.||.
T Consensus 108 ~fL~ 111 (230)
T 1ku1_A 108 ILLT 111 (230)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 7775
No 5
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
Probab=99.52 E-value=2.1e-15 Score=115.44 Aligned_cols=76 Identities=21% Similarity=0.352 Sum_probs=62.5
Q ss_pred CChhhHHHHHHHCCC--CCCChHHHHHHHhh-CCCCChhhhhhhccccccchhhccccCCchhhHHHHhhhCcCCchhhh
Q psy17822 1 MDPKKGIEWLIQNNL--LEPTEMGVAQFLYK-GEGLNKTAIGDYLGERHDFNEKNNLLEPTEMGVAQFLYKGEGLNKTAI 77 (91)
Q Consensus 1 ~~PkkGi~~l~~~g~--l~~~p~~ia~Fl~~-~~~L~k~~iGeyLg~~~~fn~~~~l~~~~~~~Ir~FL~~~~~ld~~~i 77 (91)
+|||+||+||+++.. ..++|.+||+||+. +++|||++||+|||+++++|.++ ..+.+..|.+++..||. ++
T Consensus 20 ~~PkkGI~~L~~~~~~~~~~~p~~IA~FL~~~~~~LdK~~IGeyLg~~~~~n~~V-----L~~yv~~fdF~g~~ld~-AL 93 (356)
T 1xsz_A 20 AKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQV-----LKAFTSQMNFNGQSFVE-GL 93 (356)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTTTSCHHHHHHHHTCCSHHHHHH-----HHHHHHTSCCTTSCHHH-HH
T ss_pred cCHHHHHHHHHHhccccCCCCHHHHHHHHHhcCCCCCHHHHHHHHcCCchHHHHH-----HHHHHHhcCCCCCCHHH-HH
Confidence 489999999998632 23579999999987 79999999999999999999886 56677777777777774 77
Q ss_pred hhhcc
Q psy17822 78 GDYLG 82 (91)
Q Consensus 78 g~yLg 82 (91)
|.||.
T Consensus 94 R~fL~ 98 (356)
T 1xsz_A 94 RTFLK 98 (356)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77765
No 6
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=98.23 E-value=3.5e-07 Score=65.59 Aligned_cols=40 Identities=35% Similarity=0.693 Sum_probs=35.1
Q ss_pred hhccccCCchhhHHHHhhhCcCCchhhhhhhcccCccccc
Q psy17822 50 EKNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNE 89 (91)
Q Consensus 50 ~~~~l~~~~~~~Ir~FL~~~~~ld~~~ig~yLg~~~~~~~ 89 (91)
++..++..+|.+||+||+++.+|||++||+|||++++||.
T Consensus 41 ~~~g~i~~~p~~iA~FL~~~~~L~k~~igeyLg~~~~fn~ 80 (211)
T 3ltl_A 41 QEQGMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDKFNK 80 (211)
T ss_dssp HHTTSSCSSHHHHHHHHHHCTTSCHHHHHHHHTCCSHHHH
T ss_pred HHcCCCCCCHHHHHHHHHhCcCccHHHHHHHHhccchhHH
Confidence 3345667789999999999999999999999999999875
No 7
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=98.16 E-value=6.1e-07 Score=63.95 Aligned_cols=38 Identities=68% Similarity=1.073 Sum_probs=34.1
Q ss_pred ccccCCchhhHHHHhhhCcCCchhhhhhhcccCccccc
Q psy17822 52 NNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNE 89 (91)
Q Consensus 52 ~~l~~~~~~~Ir~FL~~~~~ld~~~ig~yLg~~~~~~~ 89 (91)
..++..+|.+||+||+.+.+|||++||+|||++++||.
T Consensus 37 ~~~l~~~p~~iA~fL~~~~~l~k~~igeyLg~~~~~n~ 74 (203)
T 1r8s_E 37 NELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNL 74 (203)
T ss_dssp TTSSCSSHHHHHHHHHHCTTCCHHHHHHHHTCCSHHHH
T ss_pred CCCCCCCHHHHHHHHHHCcCcCHHHHHHHHhccchHHH
Confidence 35556789999999999999999999999999999875
No 8
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=97.91 E-value=3.1e-06 Score=63.50 Aligned_cols=39 Identities=74% Similarity=1.148 Sum_probs=34.5
Q ss_pred ccccCCchhhHHHHhhhCcCCchhhhhhhcccCcccccc
Q psy17822 52 NNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 90 (91)
Q Consensus 52 ~~l~~~~~~~Ir~FL~~~~~ld~~~ig~yLg~~~~~~~~ 90 (91)
..++..+|.+||+||+.+.+||+++||+|||++++||++
T Consensus 39 ~~~~~~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~ 77 (347)
T 2r09_A 39 NDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIK 77 (347)
T ss_dssp TTSSCCSHHHHHHHHHHCTTCCHHHHHHHHHCCSHHHHH
T ss_pred CCCCCCCHHHHHHHHHhCcCcCHHHHHHHhcCCCchHHH
Confidence 355566899999999999999999999999999998853
No 9
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
Probab=97.22 E-value=8.2e-05 Score=56.92 Aligned_cols=32 Identities=28% Similarity=0.504 Sum_probs=29.1
Q ss_pred chhhHHHHhhh-CcCCchhhhhhhcccCccccc
Q psy17822 58 TEMGVAQFLYK-GEGLNKTAIGDYLGERHDFNE 89 (91)
Q Consensus 58 ~~~~Ir~FL~~-~~~ld~~~ig~yLg~~~~~~~ 89 (91)
+|.+|++||+. +.+||+++||+|||+++++|.
T Consensus 40 ~p~~IA~FL~~~~~~LdK~~IGeyLg~~~~~n~ 72 (356)
T 1xsz_A 40 PNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQ 72 (356)
T ss_dssp HHHHHHHHHHHTTTTSCHHHHHHHHTCCSHHHH
T ss_pred CHHHHHHHHHhcCCCCCHHHHHHHHcCCchHHH
Confidence 57899999987 689999999999999998875
No 10
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=97.01 E-value=0.00028 Score=50.97 Aligned_cols=34 Identities=24% Similarity=0.504 Sum_probs=27.4
Q ss_pred cccC-CchhhHHHHhhhC-cCCchhhhhhhcccCcc
Q psy17822 53 NLLE-PTEMGVAQFLYKG-EGLNKTAIGDYLGERHD 86 (91)
Q Consensus 53 ~l~~-~~~~~Ir~FL~~~-~~ld~~~ig~yLg~~~~ 86 (91)
.++. .+|.+||+||+++ .+|||++||+|||+++.
T Consensus 49 g~l~~~~~~~iA~fL~~~~~~L~k~~iGeyLg~~~n 84 (230)
T 1ku1_A 49 GFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPDK 84 (230)
T ss_dssp TSSSCSSHHHHHHHHHHTTTTSCHHHHHHHHTCGGG
T ss_pred CCcCCCCHHHHHHHHHHcCcccCHHHHHHHHcCccH
Confidence 4444 4789999999886 47999999999997653
No 11
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=68.80 E-value=2.7 Score=25.73 Aligned_cols=32 Identities=25% Similarity=0.207 Sum_probs=26.4
Q ss_pred hHHHHHHHhhC-CCCChhhhhhhccccccchhh
Q psy17822 20 EMGVAQFLYKG-EGLNKTAIGDYLGERHDFNEK 51 (91)
Q Consensus 20 p~~ia~Fl~~~-~~L~k~~iGeyLg~~~~fn~~ 51 (91)
|..||-||... -++|-..||+++|.+++--+.
T Consensus 33 aRqiamyL~r~~t~~Sl~~IG~~fggrdHsTV~ 65 (94)
T 1j1v_A 33 PRQMAMALAKELTNHSLPEIGDAFGGRDHTTVL 65 (94)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHTTSCCHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHH
Confidence 88999999863 699999999999888764443
No 12
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=67.85 E-value=2.8 Score=26.14 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=26.3
Q ss_pred ChHHHHHHHhhC-CCCChhhhhhhccccccchhh
Q psy17822 19 TEMGVAQFLYKG-EGLNKTAIGDYLGERHDFNEK 51 (91)
Q Consensus 19 ~p~~ia~Fl~~~-~~L~k~~iGeyLg~~~~fn~~ 51 (91)
.|..||-||... -+++-..||+++| +++--+.
T Consensus 36 ~aRqiAmYL~r~~t~~Sl~~IG~~fg-RDHsTV~ 68 (101)
T 3pvv_A 36 QSRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVM 68 (101)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHTT-CCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHC-CCHHHHH
Confidence 388999999974 6999999999999 7755444
No 13
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=61.38 E-value=13 Score=27.62 Aligned_cols=35 Identities=9% Similarity=0.167 Sum_probs=24.8
Q ss_pred ChhhHHHHHHHCCCCCCChHHHHHHHhhCCCCChhhhh
Q psy17822 2 DPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIG 39 (91)
Q Consensus 2 ~PkkGi~~l~~~g~l~~~p~~ia~Fl~~~~~L~k~~iG 39 (91)
+|.+-|+.|.+.|+ +|..|+..|...|++.+..+.
T Consensus 45 ~~e~~l~~L~d~Gf---s~~~i~~il~~~P~il~~~l~ 79 (335)
T 4fp9_B 45 ELERVMSSLLDMGF---SNAHINELLSVRRGASLQQLL 79 (335)
T ss_dssp HHHHHHHHHHHTTC---CHHHHHHHHHHCSSCCHHHHH
T ss_pred cHHHHHHHHHHCCC---CHHHHHHHHHhCcccchhHHH
Confidence 35666777888777 677788888877777665544
No 14
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=44.20 E-value=18 Score=20.01 Aligned_cols=48 Identities=8% Similarity=0.115 Sum_probs=31.0
Q ss_pred ChHHHHHHHhhCCCCChhhhhhhccccccchhhcc---ccCCchhhHHHHhhhCc
Q psy17822 19 TEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKNN---LLEPTEMGVAQFLYKGE 70 (91)
Q Consensus 19 ~p~~ia~Fl~~~~~L~k~~iGeyLg~~~~fn~~~~---l~~~~~~~Ir~FL~~~~ 70 (91)
++.++|.+| ++|+..|-.+.-.+.+.-.... ..-....+|..|+.+-.
T Consensus 4 t~~e~a~~L----gvS~~Tl~rw~~~G~P~~~~~g~~~~~~y~~~dv~~wl~~~~ 54 (68)
T 1j9i_A 4 NKKQLADIF----GASIRTIQNWQEQGMPVLRGGGKGNEVLYDSAAVIKWYAERD 54 (68)
T ss_dssp EHHHHHHHT----TCCHHHHHHHTTTTCCCSSCCCSSSCCEEEHHHHHHHHTTTG
T ss_pred CHHHHHHHH----CcCHHHHHHHHHCCCCeEeeCCCcceEEECHHHHHHHHHHCc
Confidence 456788877 7888888877766553332222 33345788898887654
No 15
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=42.49 E-value=42 Score=24.24 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=23.4
Q ss_pred ChHHHHHHHhhCCCCChhhhhhhccccccc
Q psy17822 19 TEMGVAQFLYKGEGLNKTAIGDYLGERHDF 48 (91)
Q Consensus 19 ~p~~ia~Fl~~~~~L~k~~iGeyLg~~~~f 48 (91)
+|++|..||..- |+++..|+..+...+.+
T Consensus 50 ~~~~vl~fL~~~-G~s~~~i~~iv~~~P~l 78 (343)
T 3mva_O 50 NEQDLKMFLLSK-GASKEVIASIISRYPRA 78 (343)
T ss_dssp CHHHHHHHHHHT-TCCHHHHHHHHHHCGGG
T ss_pred cHHHHHHHHHHc-CCCHHHHHHHHHhCcHH
Confidence 689999999865 99999999877776543
No 16
>2k7r_A Primosomal protein DNAI; DNAI N-terminal domain, helicase-loading protein, ATP- binding, DNA replication, nucleotide-binding, primosome; NMR {Bacillus subtilis}
Probab=42.34 E-value=17 Score=22.32 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=20.0
Q ss_pred CChHHHHHHHhhCC-CCChhhhhhhccc
Q psy17822 18 PTEMGVAQFLYKGE-GLNKTAIGDYLGE 44 (91)
Q Consensus 18 ~~p~~ia~Fl~~~~-~L~k~~iGeyLg~ 44 (91)
.||. |..||..++ .|+..+|=..+..
T Consensus 30 ~dP~-V~~Fl~~h~~~l~~~~I~~s~~k 56 (106)
T 2k7r_A 30 KDQD-VQAFLKENEEVIDQKMIEKSLNK 56 (106)
T ss_dssp TCHH-HHHHHHHSTTTCCHHHHHHTHHH
T ss_pred cCHH-HHHHHHHChhhCCHHHHHhhHHH
Confidence 4665 889999987 7999988765444
No 17
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=39.63 E-value=4.1 Score=24.28 Aligned_cols=17 Identities=41% Similarity=0.591 Sum_probs=14.5
Q ss_pred hhHHHHHHHCCCCCCCh
Q psy17822 4 KKGIEWLIQNNLLEPTE 20 (91)
Q Consensus 4 kkGi~~l~~~g~l~~~p 20 (91)
|+.|++||+++++..++
T Consensus 51 Kk~IE~LIereYl~R~~ 67 (77)
T 3tdu_C 51 KKCIDILIEKEYLERVD 67 (77)
T ss_dssp HHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHhhhHhhcCC
Confidence 78999999999998654
No 18
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=38.66 E-value=18 Score=20.37 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.5
Q ss_pred ChHHHHHHHhhCCCCChhhhhh
Q psy17822 19 TEMGVAQFLYKGEGLNKTAIGD 40 (91)
Q Consensus 19 ~p~~ia~Fl~~~~~L~k~~iGe 40 (91)
.|.+|.-+|.+..++++..||.
T Consensus 14 ~p~~ivg~i~~~~gi~~~~IG~ 35 (76)
T 2g0c_A 14 RAVDFVGTIAKIDGVSADDIGI 35 (76)
T ss_dssp -CHHHHHHHHTSTTCCGGGEEE
T ss_pred CHHHHHHHHHHccCCChhhccE
Confidence 6999999999999999999984
No 19
>2kp6_A Uncharacterized protein; unknown function, structural genomics, PSI-2, protein struct initiative; NMR {Chromobacterium violaceum}
Probab=38.13 E-value=25 Score=21.34 Aligned_cols=31 Identities=16% Similarity=0.111 Sum_probs=23.8
Q ss_pred hhHHHHHHHCCCCCCChHHHHHHHhhCCCCCh
Q psy17822 4 KKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNK 35 (91)
Q Consensus 4 kkGi~~l~~~g~l~~~p~~ia~Fl~~~~~L~k 35 (91)
..-+.-|.++=-++++|++|..|+.++ .|..
T Consensus 8 ~h~l~~LF~QLGL~s~~~~I~~FI~~H-~L~~ 38 (82)
T 2kp6_A 8 NHLLPGLFRQLGLEDEPAAIRAFIDSH-PLPP 38 (82)
T ss_dssp CTHHHHHHHHHTSCCCHHHHHHHHHHS-CCCT
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHhC-CCCC
Confidence 345666777767889999999999998 4654
No 20
>3pbp_C Nucleoporin NUP159; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_B
Probab=33.00 E-value=11 Score=19.62 Aligned_cols=11 Identities=36% Similarity=0.700 Sum_probs=8.8
Q ss_pred hhhhhhhcccc
Q psy17822 35 KTAIGDYLGER 45 (91)
Q Consensus 35 k~~iGeyLg~~ 45 (91)
|++||+|+-..
T Consensus 22 KkQlGeffK~~ 32 (36)
T 3pbp_C 22 KKQIGDFFKNL 32 (36)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 88999998654
No 21
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=31.37 E-value=51 Score=19.31 Aligned_cols=35 Identities=11% Similarity=0.355 Sum_probs=17.8
Q ss_pred HHHHHCCC--CCC-ChHHHHHHHhh--CCCCChhhhhhhc
Q psy17822 8 EWLIQNNL--LEP-TEMGVAQFLYK--GEGLNKTAIGDYL 42 (91)
Q Consensus 8 ~~l~~~g~--l~~-~p~~ia~Fl~~--~~~L~k~~iGeyL 42 (91)
.|+.+.|+ +.+ ++.+|..|+.. ..+++.+.|..++
T Consensus 41 ~~l~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l 80 (117)
T 3nrw_A 41 EWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEM 80 (117)
T ss_dssp HHHHHTTCCSGGGCCHHHHHHHHHHHHTSSCCHHHHHHHH
T ss_pred HHHHHcCCCChHHCCHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45555554 222 56666666653 2355555555443
No 22
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.67 E-value=18 Score=22.58 Aligned_cols=18 Identities=39% Similarity=0.479 Sum_probs=15.3
Q ss_pred hhHHHHHHHCCCCCCChH
Q psy17822 4 KKGIEWLIQNNLLEPTEM 21 (91)
Q Consensus 4 kkGi~~l~~~g~l~~~p~ 21 (91)
|+.|++||++.+|..++.
T Consensus 69 Kk~IE~LIereYleR~~~ 86 (101)
T 2do7_A 69 KKRIESLIDRDYMERDKE 86 (101)
T ss_dssp HHHHHHHHHTTSEEECSS
T ss_pred HHHHHHHhhhhHHhcCCC
Confidence 789999999999987653
No 23
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=26.68 E-value=24 Score=22.04 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=12.9
Q ss_pred hhHHHHHHHCCCCCC
Q psy17822 4 KKGIEWLIQNNLLEP 18 (91)
Q Consensus 4 kkGi~~l~~~g~l~~ 18 (91)
-+||+||.++.....
T Consensus 67 ~~GleYL~ENS~mkK 81 (102)
T 2hgc_A 67 EKGENYLKENGTWSK 81 (102)
T ss_dssp HHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHChHHHH
Confidence 379999999998876
No 24
>3cxn_A Urease accessory protein UREF; helical, nickel, chaperone; HET: MSE; 1.55A {Helicobacter pylori} PDB: 3o1q_A 2wgl_A 3sf5_A
Probab=25.40 E-value=62 Score=23.30 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.1
Q ss_pred hhHHHHHHHCCCCCCChHHHHHHHhh
Q psy17822 4 KKGIEWLIQNNLLEPTEMGVAQFLYK 29 (91)
Q Consensus 4 kkGi~~l~~~g~l~~~p~~ia~Fl~~ 29 (91)
..|++..+++|.|. |++++..||..
T Consensus 71 S~GLE~av~~G~V~-d~~sl~~wL~~ 95 (274)
T 3cxn_A 71 SFGLETYIQQKKVT-NKESALEYLKA 95 (274)
T ss_dssp HHHHHHHHHTTSCC-SHHHHHHHHHH
T ss_pred hhhHHHHHHcCCCC-CHHHHHHHHHH
Confidence 46999999999994 57788888876
No 25
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=23.91 E-value=46 Score=19.80 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=13.0
Q ss_pred ChHHHHHHHhhCCCC
Q psy17822 19 TEMGVAQFLYKGEGL 33 (91)
Q Consensus 19 ~p~~ia~Fl~~~~~L 33 (91)
++++|+.||...+++
T Consensus 18 s~edV~~wL~~l~gl 32 (89)
T 1kw4_A 18 SVDDVSNFIRELPGC 32 (89)
T ss_dssp CHHHHHHHHHTSTTC
T ss_pred CHHHHHHHHHHCcCh
Confidence 789999999987665
No 26
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=22.95 E-value=19 Score=26.09 Aligned_cols=40 Identities=15% Similarity=0.225 Sum_probs=27.2
Q ss_pred HHHHHHHC-CCCC----CChHHHHHHHhhCCCCChhhhhhhcccc
Q psy17822 6 GIEWLIQN-NLLE----PTEMGVAQFLYKGEGLNKTAIGDYLGER 45 (91)
Q Consensus 6 Gi~~l~~~-g~l~----~~p~~ia~Fl~~~~~L~k~~iGeyLg~~ 45 (91)
=++||.++ |+++ ++|++|-.-|.-...--|++||..+-++
T Consensus 229 il~~L~~~~G~l~~~DkS~pe~I~~~f~~SK~~FKrAiG~L~K~~ 273 (285)
T 3go5_A 229 ILTYLESNGGFMTLNDKSSPDDIKATFGISKGQFKKALGGLMKAG 273 (285)
T ss_dssp HHHHHHHTTTEESCCTTSCHHHHHHHHSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCeeccCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCC
Confidence 36788876 4554 2699998887555555677888766443
No 27
>3v68_A PF2050 protein, putative uncharacterized protein; DUF2666, double stranded DNA, DNA binding protein; 1.56A {Pyrococcus furiosus}
Probab=22.08 E-value=29 Score=25.02 Aligned_cols=34 Identities=32% Similarity=0.437 Sum_probs=24.9
Q ss_pred cccCCchhhHHHHhhhCcCCchhhhhhhcccCcc
Q psy17822 53 NLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHD 86 (91)
Q Consensus 53 ~l~~~~~~~Ir~FL~~~~~ld~~~ig~yLg~~~~ 86 (91)
.+.++.++-|+.||-+..--....|.+||++--+
T Consensus 20 ~l~~~~de~ia~Fla~vsNTV~~kip~Yl~e~id 53 (252)
T 3v68_A 20 NVEDFTNENIAMFLSRVSNTVSSKIPGYLGEKID 53 (252)
T ss_dssp ECSSCCHHHHHHHHHHHHHHHHHHGGGGCTTTBC
T ss_pred hHHhhhhHHHHHHHHHHhhhhhhhhhHHHHHHhh
Confidence 4557788999999987665334588999987543
Done!