RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy17822
         (91 letters)



>gnl|CDD|238100 cd00171, Sec7, Sec7 domain; Domain named after the S. cerevisiae
          SEC7 gene product. The Sec7 domain is the central
          domain of the guanine-nucleotide-exchange factors
          (GEFs) of the ADP-ribosylation factor family of small
          GTPases (ARFs) . It carries the exchange factor
          activity.
          Length = 185

 Score = 61.5 bits (150), Expect = 3e-13
 Identities = 27/50 (54%), Positives = 36/50 (72%), Gaps = 1/50 (2%)

Query: 1  MDPKKGIEWLIQNNLLEP-TEMGVAQFLYKGEGLNKTAIGDYLGERHDFN 49
            PKKGI +LI+   LE  +   +A+FLY+ EGLNK AIG+YLGE ++FN
Sbjct: 14 RKPKKGISFLIEKGFLEDDSPKEIAKFLYETEGLNKKAIGEYLGENNEFN 63



 Score = 51.1 bits (123), Expect = 2e-09
 Identities = 21/42 (50%), Positives = 29/42 (69%)

Query: 47 DFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFN 88
             EK  L + +   +A+FLY+ EGLNK AIG+YLGE ++FN
Sbjct: 22 FLIEKGFLEDDSPKEIAKFLYETEGLNKKAIGEYLGENNEFN 63


>gnl|CDD|215560 PLN03076, PLN03076, ARF guanine nucleotide exchange factor
           (ARF-GEF); Provisional.
          Length = 1780

 Score = 61.4 bits (149), Expect = 1e-12
 Identities = 27/49 (55%), Positives = 32/49 (65%)

Query: 3   PKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 51
           PKKGIE+LI  N +  +   +A FL    GLNKT IGDYLGER D + K
Sbjct: 631 PKKGIEFLINANKVGESPEEIAAFLKDASGLNKTLIGDYLGEREDLSLK 679


>gnl|CDD|216460 pfam01369, Sec7, Sec7 domain.  The Sec7 domain is a
          guanine-nucleotide-exchange-factor (GEF) for the
          pfam00025 family.
          Length = 188

 Score = 59.2 bits (144), Expect = 2e-12
 Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 1  MDPKKGIEWLIQNNLLEP-TEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 51
            PKKGIE+LI+N L++      +A+FL +  GL+K AIG+YLG+   FN K
Sbjct: 17 KKPKKGIEYLIENGLIDEDDPKEIAKFLRETPGLDKKAIGEYLGKNDPFNRK 68



 Score = 46.5 bits (111), Expect = 1e-07
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 50 EKNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 90
          E   + E     +A+FL +  GL+K AIG+YLG+   FN K
Sbjct: 28 ENGLIDEDDPKEIAKFLRETPGLDKKAIGEYLGKNDPFNRK 68


>gnl|CDD|214569 smart00222, Sec7, Sec7 domain.  Domain named after the S.
          cerevisiae SEC7 gene product, which is required for
          proper protein transport through the Golgi. The domain
          facilitates guanine nucleotide exchange on the small
          GTPases, ARFs (ADP ribosylation factors).
          Length = 189

 Score = 55.8 bits (135), Expect = 3e-11
 Identities = 27/50 (54%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 1  MDPKKGIEWLIQNNLL-EPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFN 49
            PKKGI+ L +   L       VA FL K EGLNK AIGDYLGE  +FN
Sbjct: 17 DKPKKGIQSLQEKGFLANEDPQDVADFLSKNEGLNKKAIGDYLGEHDEFN 66



 Score = 44.2 bits (105), Expect = 8e-07
 Identities = 23/39 (58%), Positives = 24/39 (61%)

Query: 50 EKNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFN 88
          EK  L       VA FL K EGLNK AIGDYLGE  +FN
Sbjct: 28 EKGFLANEDPQDVADFLSKNEGLNKKAIGDYLGEHDEFN 66


>gnl|CDD|227623 COG5307, COG5307, SEC7 domain proteins [General function prediction
           only].
          Length = 1024

 Score = 31.2 bits (71), Expect = 0.047
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 3   PKKGIEWLIQNNLLEP-TEMGVAQFLYKGEG-LNKTAIGDYLGERHDFNEK 51
           PKKGI  LI +  ++  +   +A+ L   EG L+K  +G YLG   D N  
Sbjct: 282 PKKGIASLIDSEFIDSDSHKSIAEILEGTEGRLDKKKLGLYLGTDDDKNNA 332



 Score = 26.2 bits (58), Expect = 2.8
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 60  MGVAQFLYKGEG-LNKTAIGDYLGERHDFNEK 90
             +A+ L   EG L+K  +G YLG   D N  
Sbjct: 301 KSIAEILEGTEGRLDKKKLGLYLGTDDDKNNA 332


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.313    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0740    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,619,707
Number of extensions: 372836
Number of successful extensions: 221
Number of sequences better than 10.0: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 14
Length of query: 91
Length of database: 10,937,602
Length adjustment: 58
Effective length of query: 33
Effective length of database: 8,365,070
Effective search space: 276047310
Effective search space used: 276047310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.2 bits)