RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17822
         (91 letters)



>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 187

 Score = 60.3 bits (146), Expect = 2e-13
 Identities = 34/51 (66%), Positives = 42/51 (82%)

Query: 1  MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 51
          MDPKKGI++L++N LL+ T   +A+FLYKGEGLNKTAIGDYLGER + N  
Sbjct: 13 MDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLA 63


>d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 211

 Score = 53.0 bits (127), Expect = 1e-10
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 1  MDPKKGIEWLIQNNLL-EPTEMGVAQFLYKGEG-LNKTAIGDYLGERHDFN 49
            PKKGI  LI+   +   ++  +A+FL+     +NK  IG  L      +
Sbjct: 24 EKPKKGIPMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPDKVS 74


>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella
          pneumophila [TaxId: 446]}
          Length = 197

 Score = 49.1 bits (117), Expect = 3e-09
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 1  MDPKKGIEWLIQ--NNLLEPTEMGVAQFLYKG-EGLNKTAIGDYLGERHDFNEK 51
            PK GI  + +            +A+F ++  + L+  A+GDYL      N++
Sbjct: 18 AKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQ 71



 Score = 37.2 bits (86), Expect = 6e-05
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 52 NNLLEPTEMGVAQFLYKG-EGLNKTAIGDYLGERHDFNEK 90
                    +A+F ++  + L+  A+GDYL      N++
Sbjct: 32 EQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQ 71


>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish
          (Danio rerio) [TaxId: 7955]}
          Length = 298

 Score = 23.9 bits (50), Expect = 4.0
 Identities = 7/33 (21%), Positives = 13/33 (39%)

Query: 4  KKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKT 36
          ++G+++L         E      +    GL KT
Sbjct: 61 REGVKFLWDCVTGRRIENSYGCIMADEMGLGKT 93


>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 84

 Score = 22.5 bits (48), Expect = 6.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 4  KKGIEWLIQNNLLEPTEMGVAQFLY 28
          KK IE LI  + +E  +    Q+ Y
Sbjct: 58 KKRIESLIDRDYMERDKDNPNQYHY 82


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 326,205
Number of extensions: 12305
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 10
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.1 bits)