BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17823
(92 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R8M|E Chain E, Sec7 Domain Of The Arf Exchange Factor Arno With Brefeldin
A- Sensitizing Mutations
pdb|1S9D|E Chain E, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
Length = 203
Score = 105 bits (262), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 48/59 (81%), Positives = 52/59 (88%)
Query: 23 SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
+VL AFVDLH+FTDL LVQALRQFLWSFRLPGEAQKIDRMME FAQRYC NP +F +T
Sbjct: 75 AVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLXNPGVFQST 133
>pdb|1R8Q|E Chain E, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|F Chain F, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
Length = 203
Score = 105 bits (261), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 48/59 (81%), Positives = 52/59 (88%)
Query: 23 SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
+VL AFVDLH+FTDL LVQALRQFLWSFRLPGEAQKIDRMME FAQRYC NP +F +T
Sbjct: 75 AVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQST 133
>pdb|1PBV|A Chain A, Sec7 Domain Of The Exchange Factor Arno
Length = 195
Score = 105 bits (261), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 48/59 (81%), Positives = 52/59 (88%)
Query: 23 SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
+VL AFVDLH+FTDL LVQALRQFLWSFRLPGEAQKIDRMME FAQRYC NP +F +T
Sbjct: 73 AVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQST 131
>pdb|1R8S|E Chain E, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
Length = 203
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 52/59 (88%)
Query: 23 SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
+VL AFVDLH+FTDL LVQALRQFLWSFRLPG+AQKIDRMME FAQRYC NP +F +T
Sbjct: 75 AVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQST 133
>pdb|1BC9|A Chain A, Cytohesin-1B2-1 Sec7 Domain, Nmr, Minimized Average
Structure
Length = 200
Score = 102 bits (255), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/78 (67%), Positives = 58/78 (74%), Gaps = 5/78 (6%)
Query: 4 AISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMM 63
AI L RD+ I VL AFV+LH+FTDL LVQALRQFLWSFRLPGEAQKIDRMM
Sbjct: 55 AIGDYLGERDEFNI-----QVLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMM 109
Query: 64 ECFAQRYCQLNPNIFTNT 81
E FAQRYCQ N +F +T
Sbjct: 110 EAFAQRYCQCNNGVFQST 127
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R0D|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 102 bits (255), Expect = 4e-23, Method: Composition-based stats.
Identities = 49/70 (70%), Positives = 54/70 (77%), Gaps = 5/70 (7%)
Query: 12 RDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYC 71
RDD I VL+AFV+LH+F DL LVQALRQFLWSFRLPGEAQKIDRMME FA RYC
Sbjct: 71 RDDFNI-----KVLQAFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYC 125
Query: 72 QLNPNIFTNT 81
NP +F +T
Sbjct: 126 LCNPGVFQST 135
>pdb|4A4P|A Chain A, Crystal Structure Of The Sec7 Domain From Human Cytohesin1
pdb|4A4P|B Chain B, Crystal Structure Of The Sec7 Domain From Human Cytohesin1
Length = 192
Score = 102 bits (254), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/78 (67%), Positives = 58/78 (74%), Gaps = 5/78 (6%)
Query: 4 AISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMM 63
AI L RD+ I VL AFV+LH+FTDL LVQALRQFLWSFRLPGEAQKIDRMM
Sbjct: 55 AIGDYLGERDEFNI-----QVLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMM 109
Query: 64 ECFAQRYCQLNPNIFTNT 81
E FAQRYCQ N +F +T
Sbjct: 110 EAFAQRYCQCNNGVFQST 127
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R09|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 97.4 bits (241), Expect = 2e-21, Method: Composition-based stats.
Identities = 47/70 (67%), Positives = 52/70 (74%), Gaps = 5/70 (7%)
Query: 12 RDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYC 71
RDD I VL+AFV+LH+F DL LVQALRQFLWSFRLPGEAQKIDR E FA RYC
Sbjct: 71 RDDFNI-----KVLQAFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRXXEAFASRYC 125
Query: 72 QLNPNIFTNT 81
NP +F +T
Sbjct: 126 LCNPGVFQST 135
>pdb|3LTL|A Chain A, Crystal Structure Of Human Big1 Sec7 Domain
pdb|3LTL|B Chain B, Crystal Structure Of Human Big1 Sec7 Domain
Length = 211
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 37/52 (71%)
Query: 23 SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLN 74
V+ A+VD HDF+ V ALR FL FRLPGEAQKIDR+ME FA RY + N
Sbjct: 81 EVMYAYVDQHDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECN 132
>pdb|1XT0|B Chain B, The Structure Of N-Terminal Sec7 Domain Of Ralf
Length = 203
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 24 VLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTAH 83
VL+AF +F V+ LR FL +F+LPGEAQKIDR+++ F+ Y Q NP++ +N
Sbjct: 74 VLKAFTSQXNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADA 133
Query: 84 THRL 87
+ L
Sbjct: 134 AYLL 137
>pdb|1XSZ|A Chain A, The Structure Of Ralf
pdb|1XSZ|B Chain B, The Structure Of Ralf
Length = 356
Score = 61.6 bits (148), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 39/57 (68%)
Query: 24 VLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTN 80
VL+AF +F V+ LR FL +F+LPGEAQKIDR+++ F+ Y Q NP++ +N
Sbjct: 74 VLKAFTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSN 130
>pdb|3L8N|A Chain A, Crystal Structure Of A Domain Of Brefeldin A-Inhibited
Guanine Nucleotide-Exchange Protein 2
(Brefeldina-Inhibited Gep 2) From Homo Sapiens (Human).
Northeast Structural Genomics Consortium Target Id
Hr5562a
pdb|3SWV|A Chain A, Crystal Structure Of A Domain Of Brefeldin A-Inhibited
Guanine Nucleotide-Exchange Protein 2 (Brefeldin
A-Inhibited Gep 2) From Homo Sapiens (Human), Northeast
Structural Genomics Consortium Target Id Hr5562a
Length = 202
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 34/52 (65%)
Query: 23 SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLN 74
V A+VD DF + V ALR FL FRLPGEAQKIDR+ E FA RY + N
Sbjct: 72 EVXYAYVDQLDFCEKEFVSALRTFLEGFRLPGEAQKIDRLXEKFAARYIECN 123
>pdb|1RE0|B Chain B, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
Length = 221
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 23 SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPN 76
S+L+ F+DL DF L + +A+R L FRLPGE+Q+I+R++E F+ +Y N
Sbjct: 71 SLLKEFIDLFDFKGLRVDEAIRILLTKFRLPGESQQIERIVEAFSSKYSADQSN 124
>pdb|1KU1|A Chain A, Crystal Structure Of The Sec7 Domain Of Yeast Gea2
pdb|1KU1|B Chain B, Crystal Structure Of The Sec7 Domain Of Yeast Gea2
Length = 230
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 23 SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQ 72
S+L ++ L DF+ L + +A+R L FRLPGE+Q+I+R++E F+ YC+
Sbjct: 86 SLLNEYIRLFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCE 135
>pdb|3SW5|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|B Chain B, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|C Chain C, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|D Chain D, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|E Chain E, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|F Chain F, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
Length = 180
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 12 RDDKTIAVTVPSVLRAFVDLHDFTDL--ILVQALRQFLWSFR--LPGEAQKID 60
+D+K IA+ P + + + ++HD+TDL I ++ + F ++ PG+ KI+
Sbjct: 106 KDEKIIAIPTPKLTQRYNNIHDYTDLPEITLKQIEHFFEHYKDLEPGKWAKIE 158
>pdb|3FQ3|A Chain A, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|B Chain B, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|C Chain C, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|D Chain D, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|E Chain E, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|F Chain F, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|G Chain G, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|H Chain H, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|I Chain I, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|J Chain J, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|K Chain K, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|L Chain L, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
Length = 197
Score = 32.3 bits (72), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 12 RDDKTIAVTVPSVLRAFVDLHDFTDL--ILVQALRQFLWSFR--LPGEAQKI-DRMMECF 66
+D+K IAV P + R + +HD+TD+ I ++ + F ++ PG+ KI D E +
Sbjct: 123 KDEKIIAVPSPHLTRRYEKIHDYTDMPEITLKQIAHFFEHYKDLEPGKWVKIGDWGDEDY 182
Query: 67 AQRY 70
A+++
Sbjct: 183 ARKF 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.331 0.140 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,542,112
Number of Sequences: 62578
Number of extensions: 78280
Number of successful extensions: 212
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 196
Number of HSP's gapped (non-prelim): 16
length of query: 92
length of database: 14,973,337
effective HSP length: 59
effective length of query: 33
effective length of database: 11,281,235
effective search space: 372280755
effective search space used: 372280755
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 45 (21.9 bits)