Query psy17823
Match_columns 92
No_of_seqs 104 out of 637
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 23:56:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17823.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17823hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00171 Sec7 Sec7 domain; Doma 100.0 1.2E-30 2.5E-35 187.1 5.2 84 2-90 49-133 (185)
2 PF01369 Sec7: Sec7 domain; I 100.0 9.9E-31 2.2E-35 187.5 3.9 83 3-90 54-138 (190)
3 smart00222 Sec7 Sec7 domain. D 100.0 7.3E-30 1.6E-34 183.0 5.5 83 3-90 51-135 (187)
4 KOG0929|consensus 100.0 3E-29 6.5E-34 218.6 6.1 84 2-90 561-645 (1514)
5 KOG0930|consensus 100.0 2.4E-28 5.1E-33 187.3 8.1 83 3-90 109-191 (395)
6 PLN03076 ARF guanine nucleotid 99.9 5.3E-28 1.1E-32 214.4 4.9 83 3-90 664-746 (1780)
7 COG5307 SEC7 domain proteins [ 99.9 4.4E-27 9.5E-32 201.1 7.1 82 4-90 318-400 (1024)
8 KOG0928|consensus 99.9 2.5E-26 5.4E-31 198.4 7.0 85 6-90 555-645 (1386)
9 KOG0931|consensus 99.9 1.7E-25 3.6E-30 179.4 4.9 82 4-89 246-330 (627)
10 KOG0932|consensus 99.8 2E-20 4.4E-25 153.0 5.3 80 4-88 324-403 (774)
11 KOG1597|consensus 63.0 12 0.00026 29.4 3.8 49 12-60 176-224 (308)
12 COG1438 ArgR Arginine represso 57.5 10 0.00022 26.8 2.4 37 52-91 100-136 (150)
13 PF14804 Jag_N: Jag N-terminus 48.2 9.7 0.00021 22.1 0.9 23 34-56 2-24 (52)
14 PF04056 Ssl1: Ssl1-like; Int 45.1 27 0.00058 25.5 3.0 25 52-76 14-38 (193)
15 PF03819 MazG: MazG nucleotide 44.8 28 0.0006 20.9 2.6 41 9-49 21-65 (74)
16 smart00463 SMR Small MutS-rela 37.5 22 0.00047 21.4 1.4 18 31-48 3-20 (80)
17 PF01713 Smr: Smr domain; Int 36.7 20 0.00042 21.8 1.0 19 32-50 1-19 (83)
18 smart00653 eIF2B_5 domain pres 36.3 52 0.0011 21.9 3.1 29 56-86 66-94 (110)
19 PF13113 DUF3970: Protein of u 34.6 27 0.0006 21.2 1.4 20 49-68 3-22 (60)
20 COG3109 ProQ Activator of osmo 34.3 50 0.0011 24.4 3.0 41 10-51 29-69 (208)
21 PRK12355 conjugal transfer mat 33.6 63 0.0014 27.4 3.8 35 29-63 521-555 (558)
22 COG0828 RpsU Ribosomal protein 32.6 33 0.00072 21.2 1.6 14 36-49 9-22 (67)
23 PF02037 SAP: SAP domain; Int 32.4 80 0.0017 16.4 3.4 26 41-66 7-35 (35)
24 PF09058 L27_1: L27_1; InterP 31.1 97 0.0021 19.0 3.5 32 42-73 14-48 (64)
25 PRK03988 translation initiatio 30.9 67 0.0015 22.2 3.1 27 49-75 79-107 (138)
26 COG5589 Uncharacterized conser 30.2 36 0.00078 24.3 1.6 32 37-68 95-126 (164)
27 PF13833 EF-hand_8: EF-hand do 30.1 97 0.0021 16.7 3.7 26 41-66 8-34 (54)
28 PRK14133 DNA polymerase IV; Pr 30.0 1.2E+02 0.0026 23.1 4.7 52 35-86 55-107 (347)
29 PF01873 eIF-5_eIF-2B: Domain 29.8 47 0.001 22.6 2.1 36 49-86 70-107 (125)
30 COG5465 Uncharacterized conser 29.7 73 0.0016 23.0 3.1 36 11-46 117-158 (166)
31 KOG4437|consensus 29.2 44 0.00094 27.3 2.1 37 32-68 233-275 (482)
32 PRK12606 GTP cyclohydrolase I; 29.0 1.4E+02 0.003 22.0 4.6 68 4-71 28-130 (201)
33 PF08338 DUF1731: Domain of un 28.7 41 0.00088 19.0 1.4 17 31-47 32-48 (48)
34 PF09518 RE_HindIII: HindIII r 28.3 37 0.0008 26.8 1.6 33 34-66 274-306 (311)
35 PF07867 DUF1654: Protein of u 27.8 42 0.00091 21.1 1.5 20 49-68 29-49 (73)
36 PRK01216 DNA polymerase IV; Va 27.5 1.4E+02 0.003 23.3 4.6 52 35-86 57-109 (351)
37 PRK12336 translation initiatio 27.1 1.7E+02 0.0038 21.1 4.8 20 56-75 84-103 (201)
38 PF03828 PAP_assoc: Cid1 famil 26.6 77 0.0017 17.7 2.4 22 16-37 1-22 (60)
39 PF09288 UBA_3: Fungal ubiquit 26.3 1E+02 0.0022 18.4 2.8 47 19-66 7-53 (55)
40 PF12960 DUF3849: Protein of u 26.2 1.1E+02 0.0023 21.2 3.4 29 38-68 32-60 (133)
41 PF13314 DUF4083: Domain of un 26.1 85 0.0018 18.9 2.5 25 42-66 26-55 (58)
42 TIGR01041 ATP_syn_B_arch ATP s 25.8 3.7E+02 0.008 22.1 6.9 68 3-72 380-452 (458)
43 PF04818 CTD_bind: RNA polymer 25.6 72 0.0016 18.3 2.2 30 38-69 30-60 (64)
44 PF07660 STN: Secretin and Ton 25.1 23 0.0005 19.5 -0.1 20 32-51 18-37 (52)
45 TIGR02009 PGMB-YQAB-SF beta-ph 24.9 2.1E+02 0.0046 18.9 5.1 38 34-71 42-79 (185)
46 PF07120 DUF1376: Protein of u 24.7 89 0.0019 19.5 2.6 28 1-28 3-33 (88)
47 COG1137 YhbG ABC-type (unclass 24.6 1.5E+02 0.0033 22.6 4.2 43 34-76 91-137 (243)
48 PRK02406 DNA polymerase IV; Va 24.5 1.6E+02 0.0036 22.3 4.5 52 35-86 47-99 (343)
49 PF14904 FAM86: Family of unkn 24.3 64 0.0014 21.4 1.9 24 52-75 2-25 (100)
50 PF03793 PASTA: PASTA domain; 24.3 72 0.0016 18.0 2.0 16 33-48 5-20 (63)
51 COG3077 RelB DNA-damage-induci 24.3 54 0.0012 21.3 1.5 15 36-50 27-41 (88)
52 TIGR01990 bPGM beta-phosphoglu 24.2 2.2E+02 0.0048 18.8 4.8 38 34-71 40-77 (185)
53 PRK04946 hypothetical protein; 24.2 1.6E+02 0.0035 21.2 4.1 48 31-81 97-158 (181)
54 PF10884 DUF2683: Protein of u 24.1 83 0.0018 20.2 2.3 29 45-73 18-46 (80)
55 PRK02794 DNA polymerase IV; Pr 23.6 1.9E+02 0.0041 22.8 4.8 52 35-86 87-139 (419)
56 PF12010 DUF3502: Domain of un 22.7 2E+02 0.0044 19.2 4.2 54 13-70 70-126 (134)
57 PF09383 NIL: NIL domain; Int 22.5 48 0.001 19.7 1.0 19 50-68 50-68 (76)
58 PRK01810 DNA polymerase IV; Va 22.0 2E+02 0.0043 22.5 4.6 52 35-86 59-111 (407)
59 PRK00270 rpsU 30S ribosomal pr 22.0 72 0.0016 19.2 1.7 15 36-50 9-23 (64)
60 PF12644 DUF3782: Protein of u 22.0 1.3E+02 0.0029 17.2 2.9 25 52-76 24-49 (64)
61 TIGR00030 S21p ribosomal prote 21.9 73 0.0016 18.8 1.7 15 36-50 8-22 (58)
62 cd01700 PolY_Pol_V_umuC umuC s 21.8 1.3E+02 0.0027 22.9 3.4 52 35-86 49-103 (344)
63 PLN02559 chalcone--flavonone i 21.4 1.2E+02 0.0026 23.0 3.1 53 38-90 108-164 (230)
64 PF14911 MMS22L_C: S-phase gen 21.3 1.8E+02 0.0038 23.5 4.2 62 13-75 159-221 (373)
65 COG0068 HypF Hydrogenase matur 20.5 74 0.0016 28.0 2.0 32 5-36 420-451 (750)
No 1
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=99.96 E-value=1.2e-30 Score=187.14 Aligned_cols=84 Identities=49% Similarity=0.716 Sum_probs=79.5
Q ss_pred chhhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCCCCC-C
Q psy17823 2 PFAISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFT-N 80 (92)
Q Consensus 2 ~~~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~~f~-s 80 (92)
+-+||+|||+.++++. +||++|++.|||+|+++|+|||.||++|+||||+|+|||||++||++|++|||+.+. |
T Consensus 49 k~~ig~~L~~~~~~~~-----~vL~~y~~~f~f~~~~i~~ALR~~l~~f~lpgE~Q~Idrile~Fs~~y~~~Np~~~~~~ 123 (185)
T cd00171 49 KKAIGEYLGENNEFNS-----LVLHEFVDLFDFSGLRLDEALRKFLQSFRLPGEAQKIDRLLEKFSERYCECNPGIFSSS 123 (185)
T ss_pred HHHHHHHHcCCchHHH-----HHHHHHHHhcCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHCCCCCCCC
Confidence 4589999999988776 699999999999999999999999999999999999999999999999999999887 9
Q ss_pred CCeEEEEeee
Q psy17823 81 TAHTHRLKGH 90 (92)
Q Consensus 81 ~D~vyiLay~ 90 (92)
+|+||+|||+
T Consensus 124 ~d~v~~l~~s 133 (185)
T cd00171 124 ADAAYTLAYS 133 (185)
T ss_pred hhHHHHHHHH
Confidence 9999999985
No 2
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=99.96 E-value=9.9e-31 Score=187.51 Aligned_cols=83 Identities=39% Similarity=0.606 Sum_probs=75.8
Q ss_pred hhhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCC--CCCC
Q psy17823 3 FAISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPN--IFTN 80 (92)
Q Consensus 3 ~~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~--~f~s 80 (92)
-+||+|||+.++++. +||++|++.|||+|+++++|||.||++|+||||+|+|||||++||++|++|||+ .|.|
T Consensus 54 ~~ige~Lg~~~~~n~-----~vL~~y~~~fdf~~~~i~~ALR~~l~~f~LpgE~q~idril~~Fs~~y~~~Np~~~~~~~ 128 (190)
T PF01369_consen 54 KKIGEYLGKDNPFNR-----DVLKEYISLFDFSGMSIDEALRKFLSSFRLPGESQQIDRILEAFSERYYECNPNSTPFKS 128 (190)
T ss_dssp HHHHHHHTSSSHHHH-----HHHHHHHHTSS-TTS-HHHHHHHHCTSS-BTSSHHHHHHHHHHHHHHHHHHTTTGCSSSS
T ss_pred HHHHHHHhccchHHH-----HHHHHHHHHcCCcCccHHHHHHHhcceeeeccchHHHHHHHHHHHHHHHHhCCccccccc
Confidence 478999999888876 699999999999999999999999999999999999999999999999999996 7999
Q ss_pred CCeEEEEeee
Q psy17823 81 TAHTHRLKGH 90 (92)
Q Consensus 81 ~D~vyiLay~ 90 (92)
+|+||+|+|+
T Consensus 129 ~d~v~~l~~s 138 (190)
T PF01369_consen 129 PDTVYILAYS 138 (190)
T ss_dssp HHHHHHHHHH
T ss_pred HhHHHHHHHH
Confidence 9999999985
No 3
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=99.96 E-value=7.3e-30 Score=182.96 Aligned_cols=83 Identities=52% Similarity=0.727 Sum_probs=78.7
Q ss_pred hhhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCCCCC--C
Q psy17823 3 FAISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFT--N 80 (92)
Q Consensus 3 ~~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~~f~--s 80 (92)
-+||+|||+.++++. +||++|++.|||+|+++|+|||.||.+|+||||+|+|||||++||++|++|||+.+. |
T Consensus 51 ~~ig~~l~~~~~~~~-----~vL~~y~~~f~f~~~~i~~ALR~~l~~f~lpgE~q~Idrile~Fs~~y~~~N~~~~~~~~ 125 (187)
T smart00222 51 KAIGDYLGEHDEFNR-----LVLHAFVDLFDFSAKDLDQALREFLESFRLPGEAQKIDRLLEAFSSRYCECNPSVFSKLN 125 (187)
T ss_pred HHHHHHHcCCChHHH-----HHHHHHHHhcCcCCCcHHHHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHCCCccCCCC
Confidence 479999999888876 699999999999999999999999999999999999999999999999999999877 9
Q ss_pred CCeEEEEeee
Q psy17823 81 TAHTHRLKGH 90 (92)
Q Consensus 81 ~D~vyiLay~ 90 (92)
+|+||+|||+
T Consensus 126 ~d~~y~l~~s 135 (187)
T smart00222 126 ADAAYTLAYS 135 (187)
T ss_pred hhHHHHHHHH
Confidence 9999999985
No 4
>KOG0929|consensus
Probab=99.95 E-value=3e-29 Score=218.57 Aligned_cols=84 Identities=48% Similarity=0.732 Sum_probs=81.0
Q ss_pred chhhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCC-CCCC
Q psy17823 2 PFAISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPN-IFTN 80 (92)
Q Consensus 2 ~~~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~-~f~s 80 (92)
+..+|.|||+.|++++. ||++|++.|||+++++++|||.||..|+||||+|+|||+|++||+|||+|||+ +|.|
T Consensus 561 kt~igdyLGe~d~~~~~-----VMhayVd~~dF~~~~~~~ALR~fL~~frLPgEaQkIDRiM~kFS~ry~~cNP~~lFss 635 (1514)
T KOG0929|consen 561 KTILGDYLGEDDDFNKA-----VMHAYVDLFDFKNMSLVEALRKFLEGFRLPGEAQKIDRLMEKFSERYCKCNPGTLFSS 635 (1514)
T ss_pred HHHHHHHhcCCcchhHH-----HHHHHHHhhCcCCCcHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhcCCCccCCC
Confidence 35789999999999984 99999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCeEEEEeee
Q psy17823 81 TAHTHRLKGH 90 (92)
Q Consensus 81 ~D~vyiLay~ 90 (92)
+|+||+||||
T Consensus 636 ADtaYVLAfS 645 (1514)
T KOG0929|consen 636 ADTAYVLAFS 645 (1514)
T ss_pred ccchHHHHHH
Confidence 9999999996
No 5
>KOG0930|consensus
Probab=99.95 E-value=2.4e-28 Score=187.32 Aligned_cols=83 Identities=65% Similarity=0.937 Sum_probs=80.9
Q ss_pred hhhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q psy17823 3 FAISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTA 82 (92)
Q Consensus 3 ~~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~~f~s~D 82 (92)
-|||+|||+++++++ +||++|+++..|.++++.+|||+||-+|+||||+|+|||+||+||++||-|||.+|.|.|
T Consensus 109 taIG~yLGer~~~nl-----~vL~aFv~~Hef~dlnlVqALRQfLwSFRLPGEaQKIdRmmEaFA~rYclcNPgvfqstD 183 (395)
T KOG0930|consen 109 TAIGDYLGERDEFNL-----QVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTD 183 (395)
T ss_pred hhHhhhhccCchhHH-----HHHHHHHHHHHhccchHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCcccccCc
Confidence 389999999999999 599999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeee
Q psy17823 83 HTHRLKGH 90 (92)
Q Consensus 83 ~vyiLay~ 90 (92)
+||+|+|+
T Consensus 184 tcyvlsfs 191 (395)
T KOG0930|consen 184 TCYVLSFA 191 (395)
T ss_pred eeeeeeeh
Confidence 99999996
No 6
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=99.94 E-value=5.3e-28 Score=214.43 Aligned_cols=83 Identities=45% Similarity=0.698 Sum_probs=79.8
Q ss_pred hhhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q psy17823 3 FAISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTA 82 (92)
Q Consensus 3 ~~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~~f~s~D 82 (92)
-+||+|||+++++++ +||++|++.|||+|+++|+|||.||.+|+||||+|+||||||+||+||++|||+.|.|+|
T Consensus 664 ~~iGeyLg~~~~~~~-----~vl~~yv~~fdF~g~~~d~ALR~fL~~FrLPGEaQ~IdRime~Fa~rY~~~Np~~f~~~D 738 (1780)
T PLN03076 664 TLIGDYLGEREDLSL-----KVMHAYVDSFDFQGMEFDEAIRAFLQGFRLPGEAQKIDRIMEKFAERYCKCNPKAFSSAD 738 (1780)
T ss_pred HHHHHHHcCCChHHH-----HHHHHHHHhCCcCCCCHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhCCCcCCCHH
Confidence 479999999998887 599999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeee
Q psy17823 83 HTHRLKGH 90 (92)
Q Consensus 83 ~vyiLay~ 90 (92)
++|+|||+
T Consensus 739 ~~yvLays 746 (1780)
T PLN03076 739 TAYVLAYS 746 (1780)
T ss_pred HHHHHHHH
Confidence 99999995
No 7
>COG5307 SEC7 domain proteins [General function prediction only]
Probab=99.94 E-value=4.4e-27 Score=201.06 Aligned_cols=82 Identities=43% Similarity=0.667 Sum_probs=78.4
Q ss_pred hhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCCCCCCC-C
Q psy17823 4 AISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT-A 82 (92)
Q Consensus 4 ~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~~f~s~-D 82 (92)
.+|.|||+.+.+|+ .||++|+++|||+|+++|+|||.||++|+||||+|+|||||++||.+|++|||+.+.++ |
T Consensus 318 ~lg~~L~~~~~kn~-----~vL~~Fi~~fdFk~~~i~eALR~lL~sfrLPgEaQqIDRile~FS~~Y~~~Np~~~~~~~D 392 (1024)
T COG5307 318 KLGLYLGTDDDKNN-----AVLREFISLFDFKGLDIDEALRKLLQSFRLPGEAQQIDRILEAFSDKYYSDNPKKFSSKPD 392 (1024)
T ss_pred HHHHHhcCCchhHH-----HHHHHHHHhcCcCCCcHHHHHHHHHHheecCchHHHHHHHHHHHHHHHHHhCcccccCccc
Confidence 58999999988887 59999999999999999999999999999999999999999999999999999988877 9
Q ss_pred eEEEEeee
Q psy17823 83 HTHRLKGH 90 (92)
Q Consensus 83 ~vyiLay~ 90 (92)
+|||||||
T Consensus 393 ~vyiLafS 400 (1024)
T COG5307 393 SVYILAFS 400 (1024)
T ss_pred eeehhHHH
Confidence 99999996
No 8
>KOG0928|consensus
Probab=99.93 E-value=2.5e-26 Score=198.36 Aligned_cols=85 Identities=41% Similarity=0.552 Sum_probs=77.2
Q ss_pred hhhhcCCCchhhhhhH-----HHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCC-CCCC
Q psy17823 6 SFSLRFRDDKTIAVTV-----PSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNP-NIFT 79 (92)
Q Consensus 6 g~~lg~~d~~~i~~~~-----~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np-~~f~ 79 (92)
-+|.+..||+.||+|+ .+||++|++.|||.||++|+|||.||.+||||||||+|+||||+||++|+++|+ ++|.
T Consensus 555 fr~n~rLdKk~iGdfLc~~k~~~vLn~Fi~tFdF~gmrlDeALRl~L~sFRLPGESQ~IeRVlEAFSery~~~n~~~~~~ 634 (1386)
T KOG0928|consen 555 FRYNPRLDKKTIGDFLCDPKNVSVLNEFIGTFDFQGMRLDEALRLFLESFRLPGESQKIERVLEAFSERYYSDNSPDIFA 634 (1386)
T ss_pred HHhCccccHHHHHHHhcCcchHHHHHHHHHhcCcCCCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3455566666666666 689999999999999999999999999999999999999999999999999887 8999
Q ss_pred CCCeEEEEeee
Q psy17823 80 NTAHTHRLKGH 90 (92)
Q Consensus 80 s~D~vyiLay~ 90 (92)
++|+|++|||+
T Consensus 635 ~kDavFvLsYS 645 (1386)
T KOG0928|consen 635 DKDAVFVLSYS 645 (1386)
T ss_pred ccchhhhhhhh
Confidence 99999999996
No 9
>KOG0931|consensus
Probab=99.91 E-value=1.7e-25 Score=179.42 Aligned_cols=82 Identities=39% Similarity=0.583 Sum_probs=76.6
Q ss_pred hhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCCC---CCC
Q psy17823 4 AISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNI---FTN 80 (92)
Q Consensus 4 ~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~~---f~s 80 (92)
-||||||...+- |+++||+++++.+||++|.+|+|||.|...+++|||+|+|||+||+||+|||.|||.+ |++
T Consensus 246 MIGEflGn~~kq----fnrdVLdcvvdemDfssmelDeALRKfqahirvqgEAqKveRlIeAFsqrYc~cNP~~v~qfrn 321 (627)
T KOG0931|consen 246 MIGEFLGNRQKQ----FNRDVLDCVVDEMDFSSMELDEALRKFQAHIRVQGEAQKVERLIEAFSQRYCKCNPKVVRQFRN 321 (627)
T ss_pred HHHHHhccccch----hhhHHHHHHHhhhccccchHHHHHHHHHHHeecccHHHHHHHHHHHHHHHHhccCHHHHhhccC
Confidence 389999998553 5589999999999999999999999999999999999999999999999999999974 999
Q ss_pred CCeEEEEee
Q psy17823 81 TAHTHRLKG 89 (92)
Q Consensus 81 ~D~vyiLay 89 (92)
+|+||||||
T Consensus 322 pDTIfiLaF 330 (627)
T KOG0931|consen 322 PDTIFILAF 330 (627)
T ss_pred CCeehHHHH
Confidence 999999997
No 10
>KOG0932|consensus
Probab=99.81 E-value=2e-20 Score=153.01 Aligned_cols=80 Identities=31% Similarity=0.547 Sum_probs=76.0
Q ss_pred hhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCCCCCCCCe
Q psy17823 4 AISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTAH 83 (92)
Q Consensus 4 ~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~~f~s~D~ 83 (92)
-++++||+.+++.- .|+.+|+++|+|+|++||.|||.||+.+.|-||+|.-+|||..||+||++|||+.|.|.|.
T Consensus 324 dVA~~LgknNeFS~-----lVa~eYL~fF~Fsg~tlD~ALR~Flka~~L~GETqeRERvL~hFS~Ry~~CNP~~~~S~Dg 398 (774)
T KOG0932|consen 324 DVARHLGKNNEFSR-----LVAEEYLSFFQFSGMTLDQALREFLKALELMGETQERERVLRHFSRRYFQCNPDIFDSEDG 398 (774)
T ss_pred HHHHHhcccchHHH-----HHHHHHHHHhhccCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHhhccCccccccccc
Confidence 37889999999874 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEe
Q psy17823 84 THRLK 88 (92)
Q Consensus 84 vyiLa 88 (92)
||+|+
T Consensus 399 vHtLT 403 (774)
T KOG0932|consen 399 VHTLT 403 (774)
T ss_pred hhHHH
Confidence 99874
No 11
>KOG1597|consensus
Probab=63.04 E-value=12 Score=29.40 Aligned_cols=49 Identities=20% Similarity=0.188 Sum_probs=39.5
Q ss_pred CCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHH
Q psy17823 12 RDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKID 60 (92)
Q Consensus 12 ~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~Id 60 (92)
-+++.||...+.++++.=..-|....+..+-++.||+.+.||.+.|+.-
T Consensus 176 v~kKEIgr~~K~i~~~l~~s~~~~s~~t~~~m~RFCs~L~L~~~~q~aA 224 (308)
T KOG1597|consen 176 VSKKEIGRCVKLIGEALETSVDLISISTGDFMPRFCSNLGLPKSAQEAA 224 (308)
T ss_pred CCHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHhcCCCHHHHHHH
Confidence 5677788877888888655667766678889999999999999988653
No 12
>COG1438 ArgR Arginine repressor [Transcription]
Probab=57.48 E-value=10 Score=26.80 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=26.2
Q ss_pred CCChHHHHHHHHHHHHHHHhhhCCCCCCCCCeEEEEeeec
Q psy17823 52 LPGEAQKIDRMMECFAQRYCQLNPNIFTNTAHTHRLKGHN 91 (92)
Q Consensus 52 LpgEsQ~IdRile~Fs~~y~~~Np~~f~s~D~vyiLay~~ 91 (92)
.||.+|.|.|+|...+....- ...+..|+++|+|=++
T Consensus 100 ~PG~A~~ia~~lD~~~~~eIl---GTIaGdDTilVi~r~~ 136 (150)
T COG1438 100 SPGAAQLIARLLDSLAKDEIL---GTIAGDDTILVICRSE 136 (150)
T ss_pred CCchHHHHHHHHHhcCchhhh---eeeeCCCeEEEEecCc
Confidence 599999999999877654211 1235679999988543
No 13
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=48.19 E-value=9.7 Score=22.13 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=18.0
Q ss_pred CCCChHHHHHHHHHhhCCCCChH
Q psy17823 34 FTDLILVQALRQFLWSFRLPGEA 56 (92)
Q Consensus 34 f~~~~ld~ALR~fl~~~~LpgEs 56 (92)
|.+.++++|+...+..+.+|-+.
T Consensus 2 ~~gkt~eeAi~~A~~~l~~~~~~ 24 (52)
T PF14804_consen 2 FEGKTVEEAIEKALKELGVPREE 24 (52)
T ss_dssp EEESSHHHHHHHHHHHTT--GGG
T ss_pred eeECCHHHHHHHHHHHhCCChHH
Confidence 56789999999999999998653
No 14
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=45.05 E-value=27 Score=25.49 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.0
Q ss_pred CCChHHHHHHHHHHHHHHHhhhCCC
Q psy17823 52 LPGEAQKIDRMMECFAQRYCQLNPN 76 (92)
Q Consensus 52 LpgEsQ~IdRile~Fs~~y~~~Np~ 76 (92)
.|.--+.+-+.++.|-+.|++|||-
T Consensus 14 ~PtRl~~~~~~l~~Fv~eff~qNPi 38 (193)
T PF04056_consen 14 KPTRLQCVLKALEEFVREFFDQNPI 38 (193)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCCh
Confidence 4666677788899999999999993
No 15
>PF03819 MazG: MazG nucleotide pyrophosphohydrolase domain; InterPro: IPR004518 This domain is found in a group of prokaryotic proteins which includes Escherichia coli MazG. The domain is about 100 amino acid residues in length and contains four conserved negatively charged residues that probably form an active site or metal binding site.; PDB: 1VMG_A 2YXH_B 2OIE_B 2OIG_C 2Q4P_A 2A3Q_B 2Q9L_C 2Q5Z_B 2Q73_A 3CRC_B ....
Probab=44.83 E-value=28 Score=20.88 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=30.7
Q ss_pred hcCCCchhhhhhHHHHHHHHHhcCCC----CCChHHHHHHHHHhh
Q psy17823 9 LRFRDDKTIAVTVPSVLRAFVDLHDF----TDLILVQALRQFLWS 49 (92)
Q Consensus 9 lg~~d~~~i~~~~~~VL~~y~~~fdf----~~~~ld~ALR~fl~~ 49 (92)
+...|..++++.+-||+-..+..-+. .|.++++++..-..+
T Consensus 21 i~~~~~~~l~eElgDvl~~l~~la~~~~~~~~idle~~~~~~~~K 65 (74)
T PF03819_consen 21 IRKEDRENLEEELGDVLFYLLQLARILEERLGIDLEEALERKMEK 65 (74)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHCHTTSHHHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHhHcCCCCHHHHHHHHHHH
Confidence 34467778888888999888888776 788888887765543
No 16
>smart00463 SMR Small MutS-related domain.
Probab=37.46 E-value=22 Score=21.39 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=14.3
Q ss_pred cCCCCCChHHHHHHHHHh
Q psy17823 31 LHDFTDLILVQALRQFLW 48 (92)
Q Consensus 31 ~fdf~~~~ld~ALR~fl~ 48 (92)
.+|++|+++++|+..+..
T Consensus 3 ~lDLHG~~~~eA~~~l~~ 20 (80)
T smart00463 3 SLDLHGLTVEEALTALDK 20 (80)
T ss_pred eEEcCCCCHHHHHHHHHH
Confidence 579999999999885443
No 17
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=36.65 E-value=20 Score=21.76 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=12.7
Q ss_pred CCCCCChHHHHHHHHHhhC
Q psy17823 32 HDFTDLILVQALRQFLWSF 50 (92)
Q Consensus 32 fdf~~~~ld~ALR~fl~~~ 50 (92)
+|++|++.++|++.+-..+
T Consensus 1 iDLHG~~~~eA~~~l~~~l 19 (83)
T PF01713_consen 1 IDLHGLTVEEALRALEEFL 19 (83)
T ss_dssp EE-TTS-HHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHH
Confidence 4889999999998655443
No 18
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=36.29 E-value=52 Score=21.86 Aligned_cols=29 Identities=7% Similarity=0.172 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCCCCeEEE
Q psy17823 56 AQKIDRMMECFAQRYCQLNPNIFTNTAHTHR 86 (92)
Q Consensus 56 sQ~IdRile~Fs~~y~~~Np~~f~s~D~vyi 86 (92)
+++|+.+|+.|-+.|.-|... .|+||..+
T Consensus 66 ~~~i~~~l~~yI~~yVlC~~C--~spdT~l~ 94 (110)
T smart00653 66 PKKLQDLLRRYIKEYVLCPEC--GSPDTELI 94 (110)
T ss_pred HHHHHHHHHHHHHhcEECCCC--CCCCcEEE
Confidence 479999999999999988642 34454443
No 19
>PF13113 DUF3970: Protein of unknown function (DUF3970)
Probab=34.57 E-value=27 Score=21.19 Aligned_cols=20 Identities=25% Similarity=0.657 Sum_probs=18.0
Q ss_pred hCCCCChHHHHHHHHHHHHH
Q psy17823 49 SFRLPGEAQKIDRMMECFAQ 68 (92)
Q Consensus 49 ~~~LpgEsQ~IdRile~Fs~ 68 (92)
+++|.|-.+.|+++|+.|++
T Consensus 3 qVRl~G~~eEi~~fi~~~~~ 22 (60)
T PF13113_consen 3 QVRLSGTKEEIEEFIKSFEK 22 (60)
T ss_pred eEEecCCHHHHHHHHHhhhh
Confidence 47888988999999999998
No 20
>COG3109 ProQ Activator of osmoprotectant transporter ProP [Signal transduction mechanisms]
Probab=34.29 E-value=50 Score=24.43 Aligned_cols=41 Identities=22% Similarity=0.204 Sum_probs=29.1
Q ss_pred cCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCC
Q psy17823 10 RFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFR 51 (92)
Q Consensus 10 g~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~ 51 (92)
|+.++-.|| ..+|.-+..=+.-+.+..-|-+|||.++++++
T Consensus 29 geAKPLKiG-ifQDl~e~lq~d~~vSktQLrqAlr~yts~wR 69 (208)
T COG3109 29 GEAKPLKIG-IFQDLAERLQDDENVSKTQLRQALRLYTSSWR 69 (208)
T ss_pred ccccchhhh-HHHHHHHHHhccccccHHHHHHHHHHHhcccc
Confidence 566666776 23455555555556777789999999999987
No 21
>PRK12355 conjugal transfer mating pair stabilization protein TraN; Reviewed
Probab=33.57 E-value=63 Score=27.37 Aligned_cols=35 Identities=14% Similarity=0.304 Sum_probs=30.8
Q ss_pred HhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHH
Q psy17823 29 VDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMM 63 (92)
Q Consensus 29 ~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRil 63 (92)
+..+||+.+++.|-.-.+.....||.+.+...||=
T Consensus 521 lq~idfs~id~se~~~~~~~~~~lP~~~~~~~~iq 555 (558)
T PRK12355 521 LQKIDFSRIDFSEFYEDLMNNQKLPDSGEITQRVQ 555 (558)
T ss_pred HhhCCcccccHHHHHHHHHhhccCCCHHHHHHHHh
Confidence 46689999999999999999999999987777764
No 22
>COG0828 RpsU Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]
Probab=32.62 E-value=33 Score=21.21 Aligned_cols=14 Identities=36% Similarity=0.368 Sum_probs=10.8
Q ss_pred CChHHHHHHHHHhh
Q psy17823 36 DLILVQALRQFLWS 49 (92)
Q Consensus 36 ~~~ld~ALR~fl~~ 49 (92)
|-+||.|||.|=..
T Consensus 9 ne~~d~ALrrFKr~ 22 (67)
T COG0828 9 NEPLDKALRRFKRK 22 (67)
T ss_pred CChHHHHHHHHHHH
Confidence 56799999987543
No 23
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=32.43 E-value=80 Score=16.43 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=18.8
Q ss_pred HHHHHHHhhCCCCChH---HHHHHHHHHH
Q psy17823 41 QALRQFLWSFRLPGEA---QKIDRMMECF 66 (92)
Q Consensus 41 ~ALR~fl~~~~LpgEs---Q~IdRile~F 66 (92)
.-||..|...-||.-+ +-|+|+.+.+
T Consensus 7 ~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 7 AELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 4589999999988544 6778887653
No 24
>PF09058 L27_1: L27_1; InterPro: IPR015143 The L27 domain is a protein interaction module that exists in a large family of scaffold proteins, functioning as an organisation centre of large protein assemblies required for the establishment and maintenance of cell polarity. L27 domains form specific heterotetrameric complexes, in which each domain contains three alpha-helices []. ; PDB: 3LRA_A 1RSO_A.
Probab=31.15 E-value=97 Score=19.00 Aligned_cols=32 Identities=22% Similarity=0.439 Sum_probs=22.3
Q ss_pred HHHHHHhhCCCCChH---HHHHHHHHHHHHHHhhh
Q psy17823 42 ALRQFLWSFRLPGEA---QKIDRMMECFAQRYCQL 73 (92)
Q Consensus 42 ALR~fl~~~~LpgEs---Q~IdRile~Fs~~y~~~ 73 (92)
.|-.+..++.-|++. ..|+|++..|-.+-+..
T Consensus 14 lLe~y~~~L~~~~D~~lr~~ierli~ifkS~LF~A 48 (64)
T PF09058_consen 14 LLEEYHNKLSRPEDEELRTAIERLINIFKSRLFQA 48 (64)
T ss_dssp HHHHHHHTTSSSS-CCHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666667766 48999999998887653
No 25
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=30.91 E-value=67 Score=22.19 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=20.8
Q ss_pred hCCCCC--hHHHHHHHHHHHHHHHhhhCC
Q psy17823 49 SFRLPG--EAQKIDRMMECFAQRYCQLNP 75 (92)
Q Consensus 49 ~~~Lpg--EsQ~IdRile~Fs~~y~~~Np 75 (92)
++.+-| .+++|+.+|..|-+.|..|..
T Consensus 79 ~lii~G~~~~~~i~~~L~~yI~~yVlC~~ 107 (138)
T PRK03988 79 RLILQGKFSPRVINEKIDRYVKEYVICPE 107 (138)
T ss_pred EEEEEEeeCHHHHHHHHHHHHHhcEECCC
Confidence 344445 347999999999999998864
No 26
>COG5589 Uncharacterized conserved protein [Function unknown]
Probab=30.21 E-value=36 Score=24.33 Aligned_cols=32 Identities=25% Similarity=0.316 Sum_probs=26.8
Q ss_pred ChHHHHHHHHHhhCCCCChHHHHHHHHHHHHH
Q psy17823 37 LILVQALRQFLWSFRLPGEAQKIDRMMECFAQ 68 (92)
Q Consensus 37 ~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~ 68 (92)
.--++|.|.-+..|.|.+|-|+....+++.+.
T Consensus 95 h~p~~afRea~Ka~ELq~Ek~vl~~~v~aLar 126 (164)
T COG5589 95 HLPDTAFREALKAFELQLEKQVLADLVHALAR 126 (164)
T ss_pred cccHHHHHHHHHHHHHHhHHHHHHHHHHHHcC
Confidence 45689999999999999998888888777653
No 27
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=30.13 E-value=97 Score=16.69 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=16.1
Q ss_pred HHHHHHHhhCCCC-ChHHHHHHHHHHH
Q psy17823 41 QALRQFLWSFRLP-GEAQKIDRMMECF 66 (92)
Q Consensus 41 ~ALR~fl~~~~Lp-gEsQ~IdRile~F 66 (92)
+.||.++..+.++ --.+++++++..|
T Consensus 8 ~~~~~~l~~~g~~~~s~~e~~~l~~~~ 34 (54)
T PF13833_consen 8 EEFRRALSKLGIKDLSEEEVDRLFREF 34 (54)
T ss_dssp HHHHHHHHHTTSSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhc
Confidence 4566667666555 4445688887443
No 28
>PRK14133 DNA polymerase IV; Provisional
Probab=30.04 E-value=1.2e+02 Score=23.12 Aligned_cols=52 Identities=8% Similarity=0.100 Sum_probs=36.8
Q ss_pred CCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCCC-CCCCCeEEE
Q psy17823 35 TDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNI-FTNTAHTHR 86 (92)
Q Consensus 35 ~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~~-f~s~D~vyi 86 (92)
+||++-+|++..-.-..+|...+.-.++.+.+.+...+.-|.+ -.+.|.+|+
T Consensus 55 ~Gm~~~~A~~lcP~l~~~~~d~~~y~~~s~~i~~~l~~~s~~ve~~siDe~~l 107 (347)
T PRK14133 55 SAMPVFMAKKRCPHGIFLPVRHERYKEVSKNIFKILYEVTPIVEPVSIDEAYL 107 (347)
T ss_pred CCChHHHHHHHCCCcEEECCCHHHHHHHHHHHHHHHHHhCCceEEccCCeEEE
Confidence 5899999998766666678777766666666666666666654 246677775
No 29
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=29.79 E-value=47 Score=22.56 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=25.6
Q ss_pred hCCCCC--hHHHHHHHHHHHHHHHhhhCCCCCCCCCeEEE
Q psy17823 49 SFRLPG--EAQKIDRMMECFAQRYCQLNPNIFTNTAHTHR 86 (92)
Q Consensus 49 ~~~Lpg--EsQ~IdRile~Fs~~y~~~Np~~f~s~D~vyi 86 (92)
++.+-| ++.+|+.+|..|-+.|..|... .|+|+.++
T Consensus 70 ~lii~G~~~~~~i~~~L~~fI~~yVlC~~C--~spdT~l~ 107 (125)
T PF01873_consen 70 RLIINGRFSSKQIQDLLDKFIKEYVLCPEC--GSPDTELI 107 (125)
T ss_dssp EEEEESSSSCCHHHHHHHHHHCHHSSCTST--SSSSEEEE
T ss_pred EEEEEEecCHHHHHHHHHHHHHHEEEcCCC--CCCccEEE
Confidence 333444 3469999999999999998753 36666554
No 30
>COG5465 Uncharacterized conserved protein [Function unknown]
Probab=29.66 E-value=73 Score=22.96 Aligned_cols=36 Identities=11% Similarity=0.109 Sum_probs=25.8
Q ss_pred CCCchhhhhhH---HHHHHHHHhcC---CCCCChHHHHHHHH
Q psy17823 11 FRDDKTIAVTV---PSVLRAFVDLH---DFTDLILVQALRQF 46 (92)
Q Consensus 11 ~~d~~~i~~~~---~~VL~~y~~~f---df~~~~ld~ALR~f 46 (92)
++....+..++ +++.+.|..-| -++||+.|+|++..
T Consensus 117 ep~~~q~~v~idta~eacdsff~Af~fv~~g~~~~dea~~~~ 158 (166)
T COG5465 117 EPTSQQVEVLIDTALEACDSFFQAFQFVVWGGMDADEALAAV 158 (166)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 34444555555 77788887765 56999999999975
No 31
>KOG4437|consensus
Probab=29.17 E-value=44 Score=27.31 Aligned_cols=37 Identities=16% Similarity=0.381 Sum_probs=27.0
Q ss_pred CCCCCChHHHHHHHHHhhCC-CCCh-----HHHHHHHHHHHHH
Q psy17823 32 HDFTDLILVQALRQFLWSFR-LPGE-----AQKIDRMMECFAQ 68 (92)
Q Consensus 32 fdf~~~~ld~ALR~fl~~~~-LpgE-----sQ~IdRile~Fs~ 68 (92)
.++--.+.++|||.+...-. .|.| -|++||.|+..|+
T Consensus 233 ~~Y~~~S~~~~i~i~~~~~K~~~~~K~~~siQ~~D~~L~rLSK 275 (482)
T KOG4437|consen 233 RDYEQGSVSETIRVFFEQSKSFPPAKSLLTIQEVDEFLLRLSK 275 (482)
T ss_pred HHHHhccchhhhhhhHhhccCCCCcccceeHHHHHHHHHHHhc
Confidence 34445688999999887433 5544 2999999999885
No 32
>PRK12606 GTP cyclohydrolase I; Reviewed
Probab=29.01 E-value=1.4e+02 Score=22.04 Aligned_cols=68 Identities=28% Similarity=0.256 Sum_probs=43.0
Q ss_pred hhhhhhcCC-CchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhh------------------------------CCC
Q psy17823 4 AISFSLRFR-DDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWS------------------------------FRL 52 (92)
Q Consensus 4 ~ig~~lg~~-d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~------------------------------~~L 52 (92)
.|.+.||+. +...+.+.=+.|.+.|.+.|.=-+.+..+.+...+.. -++
T Consensus 28 ~iL~alGeD~~regL~~TP~RVak~~~e~~~G~~~~~~~~~~~~f~~~~~~mViv~~I~f~S~CEHHLLPf~G~~hVaYi 107 (201)
T PRK12606 28 ELLEALGEDPDREGLLDTPQRVAKAMQYLCDGYEQDPAEALGALFDSDNDEMVIVRDIELYSLCEHHLLPFIGVAHVAYL 107 (201)
T ss_pred HHHHHhCCCCCCcchhhHHHHHHHHHHHHhhccCCCHHHHHhccccCCCCcEEEEeCceEEEeccccccceeeEEEEEEe
Confidence 467788883 3333333337889999877755556666666533321 124
Q ss_pred CChH----HHHHHHHHHHHHHHh
Q psy17823 53 PGEA----QKIDRMMECFAQRYC 71 (92)
Q Consensus 53 pgEs----Q~IdRile~Fs~~y~ 71 (92)
|+.. -+|-||++.||+|.-
T Consensus 108 P~~~VvGLSKl~RiV~~~arRlQ 130 (201)
T PRK12606 108 PGGKVLGLSKIARIVDMFARRLQ 130 (201)
T ss_pred CCCccccHHHHHHHHHHHhcCch
Confidence 7643 389999999998864
No 33
>PF08338 DUF1731: Domain of unknown function (DUF1731); InterPro: IPR013549 This domain of unknown function appears towards the C terminus of proteins of the NAD dependent epimerase/dehydratase family (IPR001509 from INTERPRO) in bacteria, eukaryotes and archaea. Many of the proteins in which it is found are involved in cell-division inhibition. ; PDB: 3OH8_A.
Probab=28.70 E-value=41 Score=19.04 Aligned_cols=17 Identities=35% Similarity=0.380 Sum_probs=10.0
Q ss_pred cCCCCCChHHHHHHHHH
Q psy17823 31 LHDFTDLILVQALRQFL 47 (92)
Q Consensus 31 ~fdf~~~~ld~ALR~fl 47 (92)
-|.|+--++++|||..+
T Consensus 32 GF~F~~p~l~~AL~~ll 48 (48)
T PF08338_consen 32 GFQFRYPTLEEALRDLL 48 (48)
T ss_dssp T---S-SSHHHHHHH--
T ss_pred CCcccCCCHHHHHhccC
Confidence 59999999999999764
No 34
>PF09518 RE_HindIII: HindIII restriction endonuclease; InterPro: IPR019043 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the HindIII restriction endonuclease which recognises and cleaves A^AGCTT. ; PDB: 3A4K_A 2E52_B.
Probab=28.34 E-value=37 Score=26.81 Aligned_cols=33 Identities=15% Similarity=0.412 Sum_probs=27.1
Q ss_pred CCCChHHHHHHHHHhhCCCCChHHHHHHHHHHH
Q psy17823 34 FTDLILVQALRQFLWSFRLPGEAQKIDRMMECF 66 (92)
Q Consensus 34 f~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~F 66 (92)
..+|+=++|+|.++....+.++.+.|+++++.-
T Consensus 274 I~~~treeAI~el~k~~ki~~ki~~I~sF~e~i 306 (311)
T PF09518_consen 274 IKRMTREEAIRELIKSYKISSKIETIQSFIEGI 306 (311)
T ss_dssp HHTS-HHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 457888999999999999999999999988753
No 35
>PF07867 DUF1654: Protein of unknown function (DUF1654); InterPro: IPR012449 This entry is represented by Bacteriophage F116 (Pseudomonas phage F116), Orf28. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of proteins from the Pseudomonadaceae.
Probab=27.80 E-value=42 Score=21.07 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=16.3
Q ss_pred hCCCCChH-HHHHHHHHHHHH
Q psy17823 49 SFRLPGEA-QKIDRMMECFAQ 68 (92)
Q Consensus 49 ~~~LpgEs-Q~IdRile~Fs~ 68 (92)
-.++|+|+ +.=++||+.+++
T Consensus 29 I~R~~~e~~~~W~~vl~~i~E 49 (73)
T PF07867_consen 29 IHRLDDESDEDWEQVLEEIAE 49 (73)
T ss_pred EEECCCCCHHHHHHHHHHHhc
Confidence 46799999 466999998876
No 36
>PRK01216 DNA polymerase IV; Validated
Probab=27.51 E-value=1.4e+02 Score=23.32 Aligned_cols=52 Identities=10% Similarity=0.109 Sum_probs=34.9
Q ss_pred CCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCCC-CCCCCeEEE
Q psy17823 35 TDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNI-FTNTAHTHR 86 (92)
Q Consensus 35 ~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~~-f~s~D~vyi 86 (92)
+||++-+|++..-.-..+|..-+.-.++.+...+...+--|.+ -.|.|.+|+
T Consensus 57 sgM~~~~A~~lcP~li~v~~d~~~y~~~s~~i~~~l~~~tp~ve~~siDE~~L 109 (351)
T PRK01216 57 AGMPIVEAKKILPNAVYLPMRKEVYQQVSNRIMKLLREYSEKIEIASIDEAYL 109 (351)
T ss_pred CCCcHHHHHHHCCCeEEECCCHHHHHHHHHHHHHHHHHhCCceEEccCCeEEE
Confidence 5899999988765656677766665566665555555556653 346677775
No 37
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=27.09 E-value=1.7e+02 Score=21.14 Aligned_cols=20 Identities=10% Similarity=0.381 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhhhCC
Q psy17823 56 AQKIDRMMECFAQRYCQLNP 75 (92)
Q Consensus 56 sQ~IdRile~Fs~~y~~~Np 75 (92)
+++|+.+|+.|-+.|.-|..
T Consensus 84 ~~~i~~~l~~yi~~yV~C~~ 103 (201)
T PRK12336 84 EEDIQAAIDAYVDEYVICSE 103 (201)
T ss_pred HHHHHHHHHHHHHheEECCC
Confidence 67999999999999998854
No 38
>PF03828 PAP_assoc: Cid1 family poly A polymerase; InterPro: IPR002058 These PAP/25A associated domains are found in uncharacterised eukaryotic proteins, a number of which are described as 'topoisomerase 1-related' though they appear to have little or no homology to topoisomerase 1. The signatures that define this group of sequences often occur towards the C terminus after the PAP/25A core domain IPR001201 from INTERPRO.; PDB: 2B4V_A 2B56_A 2B51_A 4EP7_B 2NOM_B 2Q0G_B 2Q0D_B 2Q0C_A 2Q0F_A 2Q0E_A ....
Probab=26.64 E-value=77 Score=17.72 Aligned_cols=22 Identities=5% Similarity=0.153 Sum_probs=16.2
Q ss_pred hhhhhHHHHHHHHHhcCCCCCC
Q psy17823 16 TIAVTVPSVLRAFVDLHDFTDL 37 (92)
Q Consensus 16 ~i~~~~~~VL~~y~~~fdf~~~ 37 (92)
++|+++.+-++.|-..|||...
T Consensus 1 slg~Ll~~Ff~~Y~~~Fd~~~~ 22 (60)
T PF03828_consen 1 SLGELLLGFFEYYGRKFDYENN 22 (60)
T ss_dssp -HHHHHHHHHHHHHHTS-TTTE
T ss_pred CHHHHHHHHHHHhCCcCCCCce
Confidence 4677778888889889999863
No 39
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=26.27 E-value=1e+02 Score=18.37 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHH
Q psy17823 19 VTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECF 66 (92)
Q Consensus 19 ~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~F 66 (92)
++.+++.+.|.++ -|.--.+.+|||.+=-+-.=|.+..-.++|||..
T Consensus 7 Gi~~~lVd~F~~m-GF~~dkVvevlrrlgik~~n~~dn~t~~~ilEEL 53 (55)
T PF09288_consen 7 GIDKDLVDQFENM-GFERDKVVEVLRRLGIKSMNGVDNETENKILEEL 53 (55)
T ss_dssp --SHHHHHHHHHH-T--HHHHHHHHHHS--SS--SS--HHHHHHHHHH
T ss_pred CCCHHHHHHHHHc-CCcHHHHHHHHHHhCCCCCCCccchhHHHHHHHH
Confidence 4456777888876 6666677788876432222233445677887754
No 40
>PF12960 DUF3849: Protein of unknown function (DUF3849); InterPro: IPR024383 This domain is found in a family of uncharacterised proteins found by clustering human gut metagenomic sequences [].
Probab=26.16 E-value=1.1e+02 Score=21.25 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=21.8
Q ss_pred hHHHHHHHHHhhCCCCChHHHHHHHHHHHHH
Q psy17823 38 ILVQALRQFLWSFRLPGEAQKIDRMMECFAQ 68 (92)
Q Consensus 38 ~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~ 68 (92)
.|++|+|.-+...+|+.+ .++-||+.|+.
T Consensus 32 aIE~aI~~~~~~~~L~~~--a~~~vie~fG~ 60 (133)
T PF12960_consen 32 AIEQAIREHFDGNRLDPD--AVKEVIEKFGY 60 (133)
T ss_pred HHHHHHHHHcCCCcCCHH--HHHHHHHHHHH
Confidence 388999999999999943 56666777763
No 41
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=26.15 E-value=85 Score=18.94 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=16.1
Q ss_pred HHHHHHhhCCCCChH-----HHHHHHHHHH
Q psy17823 42 ALRQFLWSFRLPGEA-----QKIDRMMECF 66 (92)
Q Consensus 42 ALR~fl~~~~LpgEs-----Q~IdRile~F 66 (92)
-+|..+.+-.....+ |+.|||+|-.
T Consensus 26 ~IRri~~~s~~kkq~~~~~eqKLDrIIeLL 55 (58)
T PF13314_consen 26 FIRRILINSNAKKQDVDSMEQKLDRIIELL 55 (58)
T ss_pred HHHHHHHhccccccchhHHHHHHHHHHHHH
Confidence 466666654444433 8999999753
No 42
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=25.79 E-value=3.7e+02 Score=22.13 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=40.5
Q ss_pred hhhhhhhcCC--CchhhhhhHH---HHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhh
Q psy17823 3 FAISFSLRFR--DDKTIAVTVP---SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQ 72 (92)
Q Consensus 3 ~~ig~~lg~~--d~~~i~~~~~---~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~ 72 (92)
..||+|.|.. ++..+ ..+. .+.+.|+++=-....++.+++..+-.-+.-..+. ++.++.+...++|+.
T Consensus 380 ~~i~~~~G~d~l~d~~~-~~~~~~~~i~~~fL~Q~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~ 452 (458)
T TIGR01041 380 RGLVAIVGEEALSERDR-KYLKFADLFERRFVRQGRNENRSIEETLDIGWELLSILPES-ELKRIDEEYIEKYHP 452 (458)
T ss_pred HHHHHhcCCCcCCHHHH-HHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhcc
Confidence 4688888642 22211 1222 4567888885567788888887764444433332 466666666666664
No 43
>PF04818 CTD_bind: RNA polymerase II-binding domain.; InterPro: IPR006903 This entry represents a conserved region found in a number of uncharacterised eukaryotic proteins.; PDB: 2L0I_A 2KM4_A 3D9I_B 3D9N_B 3D9O_A 3D9P_B 3D9K_A 3D9M_A 3D9J_A 3D9L_A ....
Probab=25.56 E-value=72 Score=18.34 Aligned_cols=30 Identities=20% Similarity=0.408 Sum_probs=18.9
Q ss_pred hHHHHHHHHHhhCCCCChH-HHHHHHHHHHHHH
Q psy17823 38 ILVQALRQFLWSFRLPGEA-QKIDRMMECFAQR 69 (92)
Q Consensus 38 ~ld~ALR~fl~~~~LpgEs-Q~IdRile~Fs~~ 69 (92)
.+.++++...... +.|. +++.|+++.+.+|
T Consensus 30 ~l~~~~~~~~~~~--~~~~~~kv~rll~iW~~r 60 (64)
T PF04818_consen 30 VLPDAFAHAYKNV--DPEVRKKVQRLLNIWEER 60 (64)
T ss_dssp CHHHHHHHHCCCS---HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHHHhhCC
Confidence 4566666554443 5555 5999999887654
No 44
>PF07660 STN: Secretin and TonB N terminus short domain; InterPro: IPR011662 This is a conserved region found at the N-terminal region of bacterial proteins involved in either protein secretion or the uptake of selective substrates, including: Bundle-forming pilus protein B, an outer-membrane protein absolutely required for pilus biogenesis, and for enteropathogenic Escherichia coli localized adherence and autoaggregation []. PilQ, which is required for type IV pilus biogenesis and competence and is thought to function both as a pore for exit of the pilus and as a channel for entry of haem and antimicrobial agents and uptake of transforming DNA []. PupB, a specific receptor for the siderophores ferric pseudobactin BN8 and ferric pseudobactin BN7, iron chelating molecules that allow the organism to extract iron from the environment, especially under iron-restricted conditions []. TonB, which couples the electrochemical potential of the cytoplasmic membrane to the active transport of iron-siderophores and vitamin B12 across the outer membrane []. ; GO: 0019867 outer membrane; PDB: 2D1U_A 1ZZV_A 2W75_B 2O5P_A 2W77_A 2W16_A 2W6U_B 2W6T_A 2W76_B 2W78_B ....
Probab=25.11 E-value=23 Score=19.45 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=14.0
Q ss_pred CCCCCChHHHHHHHHHhhCC
Q psy17823 32 HDFTDLILVQALRQFLWSFR 51 (92)
Q Consensus 32 fdf~~~~ld~ALR~fl~~~~ 51 (92)
.++.++++++||+..|..-.
T Consensus 18 l~~~~~~~~~~L~~ll~~t~ 37 (52)
T PF07660_consen 18 LDVKNMSLEEALDQLLKGTG 37 (52)
T ss_dssp EE-EEE-HHHHHHHHTTTST
T ss_pred EEcCCcCHHHHHHHHHccCC
Confidence 46788999999999887543
No 45
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=24.93 E-value=2.1e+02 Score=18.86 Aligned_cols=38 Identities=18% Similarity=0.090 Sum_probs=25.7
Q ss_pred CCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHh
Q psy17823 34 FTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYC 71 (92)
Q Consensus 34 f~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~ 71 (92)
+.|++..+.++.++.....+.+.++++++.+.+.+.|.
T Consensus 42 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (185)
T TIGR02009 42 LGGLSREDILRAILKLRKPGLSLETIHQLAERKNELYR 79 (185)
T ss_pred cCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 45788888899888876444455667777766655443
No 46
>PF07120 DUF1376: Protein of unknown function (DUF1376); InterPro: IPR010781 This entry is represented by Bacteriophage PBC5 (Sinorhizobium phage PBC5), Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown.
Probab=24.74 E-value=89 Score=19.45 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=16.9
Q ss_pred CchhhhhhhcCC---CchhhhhhHHHHHHHH
Q psy17823 1 MPFAISFSLRFR---DDKTIAVTVPSVLRAF 28 (92)
Q Consensus 1 ~~~~ig~~lg~~---d~~~i~~~~~~VL~~y 28 (92)
||+-||+|+..+ .....|.|..-++..|
T Consensus 3 ~~~~i~d~~~dt~~Ls~~E~gaY~~Ll~~~~ 33 (88)
T PF07120_consen 3 YPLYIGDYLRDTAHLSAEEHGAYMRLLDLYY 33 (88)
T ss_pred cccCHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 577788888765 4445555555444444
No 47
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=24.63 E-value=1.5e+02 Score=22.61 Aligned_cols=43 Identities=16% Similarity=0.123 Sum_probs=31.7
Q ss_pred CCCChHHHHHHHHHhhCC-CCC-hHHH--HHHHHHHHHHHHhhhCCC
Q psy17823 34 FTDLILVQALRQFLWSFR-LPG-EAQK--IDRMMECFAQRYCQLNPN 76 (92)
Q Consensus 34 f~~~~ld~ALR~fl~~~~-Lpg-EsQ~--IdRile~Fs~~y~~~Np~ 76 (92)
|+++++.+-++..+.... -+. +.|+ ++.+|+.|.-.-...+|.
T Consensus 91 Fr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a 137 (243)
T COG1137 91 FRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKA 137 (243)
T ss_pred hhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcc
Confidence 789999999999998777 333 2355 679999998665555443
No 48
>PRK02406 DNA polymerase IV; Validated
Probab=24.50 E-value=1.6e+02 Score=22.29 Aligned_cols=52 Identities=12% Similarity=0.036 Sum_probs=32.2
Q ss_pred CCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCCC-CCCCCeEEE
Q psy17823 35 TDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNI-FTNTAHTHR 86 (92)
Q Consensus 35 ~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~~-f~s~D~vyi 86 (92)
+||++-+|++..-.-..+|...+.-.+..+.+.+...+.-|.+ -.|.|.+|+
T Consensus 47 ~gm~~~~A~~lcP~l~~~~~d~~~y~~~s~~i~~~l~~~sp~ve~~siDe~~l 99 (343)
T PRK02406 47 SAMPTAQALKLCPDLIFVPGRFDVYKEVSRQIREIFRRYTDLIEPLSLDEAYL 99 (343)
T ss_pred CCCcHHHHHHHCCCeEEECCChHHHHHHHHHHHHHHHHhCCceEEccCCeEEE
Confidence 5899999998755555567666555555555554444444553 346677765
No 49
>PF14904 FAM86: Family of unknown function
Probab=24.30 E-value=64 Score=21.44 Aligned_cols=24 Identities=21% Similarity=0.599 Sum_probs=20.7
Q ss_pred CCChHHHHHHHHHHHHHHHhhhCC
Q psy17823 52 LPGEAQKIDRMMECFAQRYCQLNP 75 (92)
Q Consensus 52 LpgEsQ~IdRile~Fs~~y~~~Np 75 (92)
.|.|+-.-+++++.|.++|..+.|
T Consensus 2 ~~e~~~~~~~~l~~f~~~FlA~~~ 25 (100)
T PF14904_consen 2 APEENAETEDLLQEFQRRFLAMRP 25 (100)
T ss_pred CccccccHHHHHHHHHHHHhhccc
Confidence 366777788999999999999987
No 50
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=24.28 E-value=72 Score=17.95 Aligned_cols=16 Identities=13% Similarity=0.036 Sum_probs=12.8
Q ss_pred CCCCChHHHHHHHHHh
Q psy17823 33 DFTDLILVQALRQFLW 48 (92)
Q Consensus 33 df~~~~ld~ALR~fl~ 48 (92)
|+.|+++++|...+-.
T Consensus 5 d~~g~~~~~a~~~l~~ 20 (63)
T PF03793_consen 5 DLVGMTYDEAKSILEA 20 (63)
T ss_dssp TTTTSBHHHHHHHHHH
T ss_pred CcCCCcHHHHHHHHHH
Confidence 7889999999986443
No 51
>COG3077 RelB DNA-damage-inducible protein J [DNA replication, recombination, and repair]
Probab=24.26 E-value=54 Score=21.27 Aligned_cols=15 Identities=33% Similarity=0.508 Sum_probs=13.7
Q ss_pred CChHHHHHHHHHhhC
Q psy17823 36 DLILVQALRQFLWSF 50 (92)
Q Consensus 36 ~~~ld~ALR~fl~~~ 50 (92)
|+++.+|+|.||.+.
T Consensus 27 Glt~S~airm~L~~v 41 (88)
T COG3077 27 GLTISDAIRMFLTKV 41 (88)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999999864
No 52
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=24.19 E-value=2.2e+02 Score=18.78 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=22.5
Q ss_pred CCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHh
Q psy17823 34 FTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYC 71 (92)
Q Consensus 34 f~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~ 71 (92)
+.|++..+.++.++.....+-...+++++++.+.+.|.
T Consensus 40 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (185)
T TIGR01990 40 LKGVSREDSLERILDLGGKKYSEEEKEELAERKNDYYV 77 (185)
T ss_pred hcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 45777888888888765543222345556555544443
No 53
>PRK04946 hypothetical protein; Provisional
Probab=24.16 E-value=1.6e+02 Score=21.20 Aligned_cols=48 Identities=15% Similarity=0.297 Sum_probs=33.8
Q ss_pred cCCCCCChHHHHHHHHHhhCC------------CCChHHHHHHHHHHHHHHHhhhCCCC--CCCC
Q psy17823 31 LHDFTDLILVQALRQFLWSFR------------LPGEAQKIDRMMECFAQRYCQLNPNI--FTNT 81 (92)
Q Consensus 31 ~fdf~~~~ld~ALR~fl~~~~------------LpgEsQ~IdRile~Fs~~y~~~Np~~--f~s~ 81 (92)
..|.+|++.++|...+...+. +-|-+. -+|...-..|..+.|.+ |+++
T Consensus 97 ~LDLhG~~~eeA~~~L~~fl~~a~~~g~r~v~IIHGkG~---gvLk~~V~~wL~q~~~V~af~~A 158 (181)
T PRK04946 97 FLDLHGLTQLQAKQELGALIAACRKEHVFCACVMHGHGK---HILKQQTPLWLAQHPDVMAFHQA 158 (181)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCH---hHHHHHHHHHHcCCchhheeecc
Confidence 489999999999886554332 123222 57888888999999975 6553
No 54
>PF10884 DUF2683: Protein of unknown function (DUF2683); InterPro: IPR020271 This entry contains proteins with no known function.
Probab=24.14 E-value=83 Score=20.16 Aligned_cols=29 Identities=14% Similarity=0.321 Sum_probs=23.8
Q ss_pred HHHhhCCCCChHHHHHHHHHHHHHHHhhh
Q psy17823 45 QFLWSFRLPGEAQKIDRMMECFAQRYCQL 73 (92)
Q Consensus 45 ~fl~~~~LpgEsQ~IdRile~Fs~~y~~~ 73 (92)
.+=.+.-|+.+|+.||-+++.|++.-.+.
T Consensus 18 IiKaky~lkdks~aId~~ieeye~~~lEp 46 (80)
T PF10884_consen 18 IIKAKYNLKDKSAAIDKIIEEYEEKILEP 46 (80)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHhccc
Confidence 34456779999999999999999887743
No 55
>PRK02794 DNA polymerase IV; Provisional
Probab=23.58 E-value=1.9e+02 Score=22.82 Aligned_cols=52 Identities=12% Similarity=0.059 Sum_probs=35.8
Q ss_pred CCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCCC-CCCCCeEEE
Q psy17823 35 TDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNI-FTNTAHTHR 86 (92)
Q Consensus 35 ~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~~-f~s~D~vyi 86 (92)
+||++-+|++..-.-..+|..-+.-.++.+.+.+.+.+--|.+ -.+.|.+|+
T Consensus 87 ~GM~~~~A~~lcP~l~~v~~d~~~y~~~s~~i~~~l~~~sp~ve~~siDe~~l 139 (419)
T PRK02794 87 SAMPMFKALKLCPDAVVIKPDMEKYVRVGREVRAMMQALTPLVEPLSIDEAFL 139 (419)
T ss_pred cCCHHHHHHHHCCCcEEECCCHHHHHHHHHHHHHHHHHhCcceeeccCCeEEE
Confidence 5899999998755656677776666666666666666666653 346677765
No 56
>PF12010 DUF3502: Domain of unknown function (DUF3502); InterPro: IPR022627 This domain is about 140 amino acids in length and is functionally uncharacterised. It is found in bacteria C-terminal to PF01547 from PFAM.
Probab=22.68 E-value=2e+02 Score=19.20 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=40.3
Q ss_pred CchhhhhhH---HHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHH
Q psy17823 13 DDKTIAVTV---PSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRY 70 (92)
Q Consensus 13 d~~~i~~~~---~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y 70 (92)
|..++...+ ..|..+|...+..--...++++=.|...+.--| ||+|++...+.+
T Consensus 70 D~s~Vk~Eiaa~~~v~~~Y~~~L~~G~vd~e~~~~~~~~kLk~AG----idkV~~E~QkQl 126 (134)
T PF12010_consen 70 DPSPVKNEIAACSNVWSEYYPPLETGLVDPEEALPEFNEKLKAAG----IDKVIAELQKQL 126 (134)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHhC----hHHHHHHHHHHH
Confidence 444444444 788999998888877779999999999987777 777777666553
No 57
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=22.46 E-value=48 Score=19.68 Aligned_cols=19 Identities=21% Similarity=0.697 Sum_probs=13.8
Q ss_pred CCCCChHHHHHHHHHHHHH
Q psy17823 50 FRLPGEAQKIDRMMECFAQ 68 (92)
Q Consensus 50 ~~LpgEsQ~IdRile~Fs~ 68 (92)
+.+||+.+++++.++.+.+
T Consensus 50 l~l~g~~~~~~~a~~~L~~ 68 (76)
T PF09383_consen 50 LELPGDDEEIEKAIAYLRE 68 (76)
T ss_dssp EEEES-HHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHH
Confidence 3468999999999866654
No 58
>PRK01810 DNA polymerase IV; Validated
Probab=22.03 E-value=2e+02 Score=22.45 Aligned_cols=52 Identities=12% Similarity=-0.024 Sum_probs=32.8
Q ss_pred CCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCCC-CCCCCeEEE
Q psy17823 35 TDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNI-FTNTAHTHR 86 (92)
Q Consensus 35 ~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~~-f~s~D~vyi 86 (92)
+||++-+|++..-.-..+|..-+.-.++.+.+.+...+--|.+ -.|.|.+|+
T Consensus 59 ~Gm~~~~A~~lcP~l~~~~~d~~~y~~~s~~i~~~l~~~sp~ve~~siDe~~l 111 (407)
T PRK01810 59 TTMPLWEAKRLCPQLIVRRPNFDRYREASRQMFQILSEFTPLVQPVSIDEGYL 111 (407)
T ss_pred CCChHHHHHHHCCCeEEECCChHHHHHHHHHHHHHHHHhCCceEEecCCeEEE
Confidence 5899999999755555566655555555555555555555653 346677775
No 59
>PRK00270 rpsU 30S ribosomal protein S21; Reviewed
Probab=22.01 E-value=72 Score=19.22 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=11.5
Q ss_pred CChHHHHHHHHHhhC
Q psy17823 36 DLILVQALRQFLWSF 50 (92)
Q Consensus 36 ~~~ld~ALR~fl~~~ 50 (92)
|-++|.|||.|=..+
T Consensus 9 ~e~ie~Alrrfkr~~ 23 (64)
T PRK00270 9 NESIDKALRRFKRKV 23 (64)
T ss_pred CChHHHHHHHHHHHH
Confidence 557999999876554
No 60
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=21.96 E-value=1.3e+02 Score=17.21 Aligned_cols=25 Identities=12% Similarity=0.373 Sum_probs=20.4
Q ss_pred CCChH-HHHHHHHHHHHHHHhhhCCC
Q psy17823 52 LPGEA-QKIDRMMECFAQRYCQLNPN 76 (92)
Q Consensus 52 LpgEs-Q~IdRile~Fs~~y~~~Np~ 76 (92)
+|.|. +.|++.+.+.+.+|...+-.
T Consensus 24 lt~e~~~~l~~~~~al~~~~~~~~e~ 49 (64)
T PF12644_consen 24 LTKEDKKRLEEYIDALGARWGLESEE 49 (64)
T ss_pred cCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 77776 78899999999999876544
No 61
>TIGR00030 S21p ribosomal protein S21. This model describes bacterial ribosomal protein S21 and most mitochondrial and chloroplast equivalents.
Probab=21.93 E-value=73 Score=18.82 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=11.4
Q ss_pred CChHHHHHHHHHhhC
Q psy17823 36 DLILVQALRQFLWSF 50 (92)
Q Consensus 36 ~~~ld~ALR~fl~~~ 50 (92)
|-++|.|||.|=..+
T Consensus 8 ~e~ie~alrrfkr~~ 22 (58)
T TIGR00030 8 GESIDSALRRFKRKL 22 (58)
T ss_pred CCcHHHHHHHHHHHH
Confidence 567999999876544
No 62
>cd01700 PolY_Pol_V_umuC umuC subunit of DNA Polymerase V. umuC subunit of Pol V. Pol V is a bacterial translesion synthesis (TLS) polymerase that consists of the heterotrimer of one umuC and two umuD subunits. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Pol V, RecA, single stranded DNA-binding protein, beta sliding clamp, and gamma clamp loading complex are responsible for inducing the SOS response in bacteria to repair UV-induced DNA damage.
Probab=21.84 E-value=1.3e+02 Score=22.94 Aligned_cols=52 Identities=4% Similarity=-0.029 Sum_probs=28.7
Q ss_pred CCChHHHHHHHHHhh--CCCCChHHHHHHHHHHHHHHHhhhCCCC-CCCCCeEEE
Q psy17823 35 TDLILVQALRQFLWS--FRLPGEAQKIDRMMECFAQRYCQLNPNI-FTNTAHTHR 86 (92)
Q Consensus 35 ~~~~ld~ALR~fl~~--~~LpgEsQ~IdRile~Fs~~y~~~Np~~-f~s~D~vyi 86 (92)
+||++.+|++.--.- ..+|.+.+.-.+..+...+...+..|.+ -.+.|.+|+
T Consensus 49 ~gm~~~~A~~lcP~l~~~~v~~~~~~y~~~s~~i~~~l~~~~~~ve~~s~De~~l 103 (344)
T cd01700 49 MGSPYFKVPDLLERHGVAVFSSNYALYGDMSRRIMSILERFSPDVEVYSIDESFL 103 (344)
T ss_pred CCCcHHHhHhhccccCeEEEcCchHHHHHHHHHHHHHHHhcCCcceEeecchhhc
Confidence 589999998874443 3567665543334444444444445543 234555443
No 63
>PLN02559 chalcone--flavonone isomerase
Probab=21.40 E-value=1.2e+02 Score=23.02 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=38.0
Q ss_pred hHHHHHHHHHhhCCCCC--hHHHHHHHHHHHHHHHhhhCCCC-C-CCCCeEEEEeee
Q psy17823 38 ILVQALRQFLWSFRLPG--EAQKIDRMMECFAQRYCQLNPNI-F-TNTAHTHRLKGH 90 (92)
Q Consensus 38 ~ld~ALR~fl~~~~Lpg--EsQ~IdRile~Fs~~y~~~Np~~-f-~s~D~vyiLay~ 90 (92)
-+.++.|.+..+..... |...|+++.+.|..+++.....+ | .+++..-+++|+
T Consensus 108 kv~e~~~a~~ks~g~y~daE~~aLekF~~~Fk~~~fp~Gs~I~ft~sp~g~L~isfs 164 (230)
T PLN02559 108 KVTENCVAIWKSLGIYTDAEAKAVEKFKEAFKEETFPPGSSILFTHSPTGSLTVAFS 164 (230)
T ss_pred HHhHHHHHHHHhcCCcchhHHHHHHHHHHHhcCCCCCCCCEEEEEECCCCcEEEEEe
Confidence 45888888888887775 44789999999988877655542 2 246667777665
No 64
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=21.31 E-value=1.8e+02 Score=23.47 Aligned_cols=62 Identities=8% Similarity=0.099 Sum_probs=44.8
Q ss_pred CchhhhhhHHHHHHHHHhcCCCCCChHHHHHHH-HHhhCCCCChHHHHHHHHHHHHHHHhhhCC
Q psy17823 13 DDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQ-FLWSFRLPGEAQKIDRMMECFAQRYCQLNP 75 (92)
Q Consensus 13 d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~-fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np 75 (92)
.+..++..+++|..+|+..|-++.-+ .-+.|. .+..+.-|..+.-...|++.+++.|.+.+.
T Consensus 159 ~dayL~~~l~~ii~~y~~~Fl~~~~~-~~~~~l~~~~~~~~~~~~~l~~~il~~i~~~fl~~~~ 221 (373)
T PF14911_consen 159 QDAYLNQQLRNIIQQYLPRFLPASPS-KLVARLSTLLSAFTPRNEELRKFILQVIRSNFLEFKG 221 (373)
T ss_pred cChHHHHHHHHHHHHHHhHhccCCCc-cccccccccccchhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 34446666689999999999998644 555662 234444566667888999999999998764
No 65
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=20.54 E-value=74 Score=28.02 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=28.0
Q ss_pred hhhhhcCCCchhhhhhHHHHHHHHHhcCCCCC
Q psy17823 5 ISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTD 36 (92)
Q Consensus 5 ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~ 36 (92)
+++|+|++.....=++.++.++.|++.+||..
T Consensus 420 lSQ~iGdls~~~t~~~~~ea~~~~~~~~~~~p 451 (750)
T COG0068 420 LSQHIGDLSNLETLEFFREALRHFLKIYDFEP 451 (750)
T ss_pred eccccCcchhhhHHHHHHHHHHHHHHHhcCCC
Confidence 67899999888777788999999999999975
Done!