Query psy17823
Match_columns 92
No_of_seqs 104 out of 637
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 23:56:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17823.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17823hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r8s_E ARNO; protein transport 100.0 4.1E-34 1.4E-38 207.6 4.7 83 3-90 60-142 (203)
2 3ltl_A Brefeldin A-inhibited g 100.0 4.3E-33 1.5E-37 203.4 4.7 83 3-90 66-150 (211)
3 1xsz_A Guanine nucleotide exch 100.0 8.3E-32 2.8E-36 208.7 4.9 82 4-90 59-140 (356)
4 1ku1_A ARF guanine-nucleotide 100.0 3.3E-31 1.1E-35 195.4 4.7 79 12-90 70-168 (230)
5 2r09_A Cytohesin-3; autoinhibi 100.0 2.7E-31 9.2E-36 202.7 4.3 83 3-90 62-144 (347)
6 3kxy_A Exoenzyme S synthesis p 64.0 15 0.00051 24.6 5.0 34 56-91 4-37 (133)
7 2qkl_B SPAC19A8.12 protein, SP 50.5 21 0.0007 22.4 3.8 39 32-70 1-42 (95)
8 2g2k_A EIF-5, eukaryotic trans 36.0 51 0.0018 22.7 4.3 29 56-86 82-110 (170)
9 2c0s_A Conserved domain protei 35.1 34 0.0012 19.8 2.8 21 56-76 35-55 (64)
10 2e9h_A EIF-5, eukaryotic trans 33.6 44 0.0015 22.7 3.6 21 55-75 88-108 (157)
11 2d9i_A NEDD4-binding protein 2 33.1 16 0.00055 22.1 1.2 16 31-46 10-25 (96)
12 3fau_A NEDD4-binding protein 2 29.9 20 0.00069 21.0 1.2 15 31-45 2-16 (82)
13 2p5m_A Arginine repressor; alp 28.8 45 0.0015 19.8 2.7 32 52-89 33-67 (83)
14 2zc2_A DNAD-like replication p 28.3 87 0.003 17.8 5.7 44 22-67 23-66 (78)
15 1nee_A EIF-2-beta, probable tr 27.5 36 0.0012 22.6 2.2 20 56-75 88-107 (138)
16 3c1q_A General secretion pathw 27.4 55 0.0019 19.9 3.0 31 35-65 27-57 (123)
17 1bdg_A Hexokinase; phosphotran 26.4 50 0.0017 25.5 3.2 35 34-70 3-37 (451)
18 2d74_B Translation initiation 26.2 41 0.0014 22.6 2.3 26 49-74 81-108 (148)
19 3b1j_C CP12; alpha/beta fold, 25.9 31 0.001 16.7 1.2 10 68-77 8-17 (26)
20 2zfz_A Arginine repressor; DNA 25.7 67 0.0023 18.8 3.0 33 52-90 29-64 (79)
21 1b4b_A Arginine repressor; cor 25.2 70 0.0024 18.4 3.0 33 52-90 21-56 (71)
22 1zoq_C CREB-binding protein, i 24.8 93 0.0032 17.1 3.2 22 42-63 2-26 (47)
23 2whn_A PILC, pilus assembly pr 22.9 45 0.0015 19.9 1.9 35 35-72 61-105 (116)
24 3sdb_A Glutamine-dependent NAD 22.4 2.8E+02 0.0095 22.4 7.0 59 10-72 555-631 (680)
25 2zqe_A MUTS2 protein; alpha/be 21.8 34 0.0012 20.4 1.1 44 31-77 6-61 (83)
26 2vkc_A NEDD4-binding protein 2 21.5 34 0.0011 22.1 1.1 17 30-46 54-70 (135)
27 3dfd_A Protein YQBN; SR445 NES 20.4 84 0.0029 21.2 3.0 51 17-67 78-134 (157)
28 3u81_A Catechol O-methyltransf 20.2 1.6E+02 0.0056 19.2 4.5 30 23-52 7-38 (221)
No 1
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=100.00 E-value=4.1e-34 Score=207.63 Aligned_cols=83 Identities=63% Similarity=0.935 Sum_probs=79.8
Q ss_pred hhhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q psy17823 3 FAISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTA 82 (92)
Q Consensus 3 ~~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~~f~s~D 82 (92)
-+||+|||+.++++. +||++|+++|||+|+++|+|||.||++|+||||+|+|||||++||+|||+|||++|.|+|
T Consensus 60 ~~igeyLg~~~~~n~-----~vl~~y~~~fdF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~f~s~D 134 (203)
T 1r8s_E 60 TAIGDYLGEREELNL-----AVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQSTD 134 (203)
T ss_dssp HHHHHHHTCCSHHHH-----HHHHHHHHTCCCTTCCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHH
T ss_pred HHHHHHHhccchHHH-----HHHHHHHHhcCCCCCcHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHhCCcccCCcc
Confidence 479999999998887 599999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeee
Q psy17823 83 HTHRLKGH 90 (92)
Q Consensus 83 ~vyiLay~ 90 (92)
+||+|||+
T Consensus 135 ~~~vLayS 142 (203)
T 1r8s_E 135 TCYVLSYS 142 (203)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 99999996
No 2
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=99.97 E-value=4.3e-33 Score=203.37 Aligned_cols=83 Identities=43% Similarity=0.574 Sum_probs=78.9
Q ss_pred hhhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCC--CCCC
Q psy17823 3 FAISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPN--IFTN 80 (92)
Q Consensus 3 ~~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~--~f~s 80 (92)
-+||+|||+.++++. +||++|+++|||+|+++|+|||.||++|+||||+|+|||||++||+||++|||+ +|.|
T Consensus 66 ~~igeyLg~~~~fn~-----~vL~~yv~~fdF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~~~f~s 140 (211)
T 3ltl_A 66 TQVGEFLGDNDKFNK-----EVMYAYVDQHDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFAS 140 (211)
T ss_dssp HHHHHHHTCCSHHHH-----HHHHHHHHTSCCCSSCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHTCTTCCSCSS
T ss_pred HHHHHHHhccchhHH-----HHHHHHHHhcCCCCCCHHHHHHHHHHhCcCCCchhHHHHHHHHHHHHHHHhCCCCCCcCC
Confidence 368999999998876 699999999999999999999999999999999999999999999999999997 6999
Q ss_pred CCeEEEEeee
Q psy17823 81 TAHTHRLKGH 90 (92)
Q Consensus 81 ~D~vyiLay~ 90 (92)
+|+||+|||+
T Consensus 141 ~D~~~iLayS 150 (211)
T 3ltl_A 141 ADTAYVLAYS 150 (211)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 3
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
Probab=99.97 E-value=8.3e-32 Score=208.72 Aligned_cols=82 Identities=37% Similarity=0.579 Sum_probs=78.6
Q ss_pred hhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCCCCCCCCe
Q psy17823 4 AISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTAH 83 (92)
Q Consensus 4 ~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~~f~s~D~ 83 (92)
+||+|||+.++++. +||++|+++|||+|+++|+|||.||.+|+||||+|+|||||++||+|||+|||+.|.|+|+
T Consensus 59 ~IGeyLg~~~~~n~-----~VL~~yv~~fdF~g~~ld~ALR~fL~~frLPGEaQ~IDRile~FA~rY~~~Np~~f~s~D~ 133 (356)
T 1xsz_A 59 AVGDYLSSPEAENQ-----QVLKAFTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADA 133 (356)
T ss_dssp HHHHHHTCCSHHHH-----HHHHHHHHTSCCTTSCHHHHHHHHHHTSCBCSSHHHHHHHHHHHHHHHHHHCTTTSSSHHH
T ss_pred HHHHHHcCCchHHH-----HHHHHHHHhcCCCCCCHHHHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHhCCCccCChhH
Confidence 68899999888776 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeee
Q psy17823 84 THRLKGH 90 (92)
Q Consensus 84 vyiLay~ 90 (92)
||+|||+
T Consensus 134 ~yvLayS 140 (356)
T 1xsz_A 134 AYLLAFQ 140 (356)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999996
No 4
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=99.96 E-value=3.3e-31 Score=195.35 Aligned_cols=79 Identities=33% Similarity=0.599 Sum_probs=70.3
Q ss_pred CCchhhhhhH-----HHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCC----------
Q psy17823 12 RDDKTIAVTV-----PSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPN---------- 76 (92)
Q Consensus 12 ~d~~~i~~~~-----~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~---------- 76 (92)
.+++.||+|+ .+||++|+++|||+|+++|+|||.||.+|+||||+|+|||||++||+||++|||+
T Consensus 70 L~k~~iGeyLg~~~n~~vL~~yv~~fdF~g~~ld~ALR~fL~~f~LPGEaQ~IdRile~Fa~rY~~~N~~~p~~~~~~~~ 149 (230)
T 1ku1_A 70 MNKKTIGLLLCHPDKVSLLNEYIRLFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDPSKISDNAE 149 (230)
T ss_dssp SCHHHHHHHHTCGGGHHHHHHHHHTSCCTTCCHHHHHHHHTTTCCCCSSHHHHHHHHHHHHHHHHHTSCCCGGGCCSCCT
T ss_pred cCHHHHHHHHcCccHHHHHHHHHhhccCCCCCHHHHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHhCCCCccccccccc
Confidence 3444444444 5799999999999999999999999999999999999999999999999999973
Q ss_pred -----CCCCCCeEEEEeee
Q psy17823 77 -----IFTNTAHTHRLKGH 90 (92)
Q Consensus 77 -----~f~s~D~vyiLay~ 90 (92)
+|.|+|+||+|||+
T Consensus 150 ~~~~~~f~s~D~vyvLayS 168 (230)
T 1ku1_A 150 DDISTVQPDADSVFILSYS 168 (230)
T ss_dssp TCGGGCCCCHHHHHHHHHH
T ss_pred cccccccCCchHHHHHHHH
Confidence 57899999999996
No 5
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=99.96 E-value=2.7e-31 Score=202.68 Aligned_cols=83 Identities=63% Similarity=0.918 Sum_probs=79.9
Q ss_pred hhhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q psy17823 3 FAISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTA 82 (92)
Q Consensus 3 ~~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~~f~s~D 82 (92)
-+||+|||+.++++. +||++|++.|||+|+++|+|||.||++|+||||+|+|||||++||++|++|||++|.|+|
T Consensus 62 ~~ig~~l~~~~~~~~-----~vl~~~~~~~~f~~~~~~~alR~~l~~f~lpgE~q~idril~~Fa~~y~~~np~~~~~~d 136 (347)
T 2r09_A 62 TVIGDYLGERDDFNI-----KVLQAFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQSTD 136 (347)
T ss_dssp HHHHHHHHCCSHHHH-----HHHHHHHHTSCCTTCCHHHHHHHHTTSCCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHH
T ss_pred HHHHHHhcCCCchHH-----HHHHHHHHhcCcCCCCHHHHHHHHHHhCcCCCchHHHHHHHHHHHHHHHHhCCcccCChh
Confidence 479999999998887 599999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeee
Q psy17823 83 HTHRLKGH 90 (92)
Q Consensus 83 ~vyiLay~ 90 (92)
+||+|+|+
T Consensus 137 ~~~~l~~s 144 (347)
T 2r09_A 137 TCYVLSFA 144 (347)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999986
No 6
>3kxy_A Exoenzyme S synthesis protein C; type-three secretion system, TTSS, T3SS, chaperone-effector chaperone, effector, chaperone-transcription inhibitor COMP; 2.80A {Pseudomonas aeruginosa}
Probab=64.03 E-value=15 Score=24.64 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCCCCeEEEEeeec
Q psy17823 56 AQKIDRMMECFAQRYCQLNPNIFTNTAHTHRLKGHN 91 (92)
Q Consensus 56 sQ~IdRile~Fs~~y~~~Np~~f~s~D~vyiLay~~ 91 (92)
.|+|++|+..||.+|- =|.+-.+.+.+.-|||..
T Consensus 4 ~~~Vn~vL~qFa~qig--LP~l~L~~eg~~~lafDd 37 (133)
T 3kxy_A 4 TSKVNRLLAEFAGRIG--LPSLSLDEEGMASLLFDE 37 (133)
T ss_dssp HHHHHHHHHHHHHHHT--CSCCCCCTTSEEEEEETT
T ss_pred HHHHHHHHHHHHHHcC--CCceeEccccceeEEEcC
Confidence 4899999999999984 455556777777777763
No 7
>2qkl_B SPAC19A8.12 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} SCOP: a.242.1.1
Probab=50.51 E-value=21 Score=22.41 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=31.1
Q ss_pred CCCCCChHHHHHHHHHhhCCC--CChH-HHHHHHHHHHHHHH
Q psy17823 32 HDFTDLILVQALRQFLWSFRL--PGEA-QKIDRMMECFAQRY 70 (92)
Q Consensus 32 fdf~~~~ld~ALR~fl~~~~L--pgEs-Q~IdRile~Fs~~y 70 (92)
+.|++.+++++|=.++.+|-+ |.|- +.++||.=..-+.|
T Consensus 1 ~~~~~~~~~~iLdDL~~RFIiN~P~eel~s~eRl~FqiEeA~ 42 (95)
T 2qkl_B 1 MSFTNATFSQVLDDLSARFILNLPAEEQSSVERLCFQIEQAH 42 (95)
T ss_dssp -CCTTCCHHHHHHHHHHHHTTTCCGGGSSCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHHcCCHHHhhhHHHHHHHHHhhe
Confidence 368999999999999999985 7655 67999976666553
No 8
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=36.03 E-value=51 Score=22.70 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCCCCeEEE
Q psy17823 56 AQKIDRMMECFAQRYCQLNPNIFTNTAHTHR 86 (92)
Q Consensus 56 sQ~IdRile~Fs~~y~~~Np~~f~s~D~vyi 86 (92)
+.+|+.+|+.|-+.|..|... .|+||..+
T Consensus 82 ~~~i~~~L~~yI~~YVlC~~C--~sPdT~L~ 110 (170)
T 2g2k_A 82 ANKLQDMLDGFIKKFVLCPEC--ENPETDLH 110 (170)
T ss_dssp HHHHHHHHHHHHHHHHSCTTT--SSSCEEEE
T ss_pred HHHHHHHHHHHHHHeEECCCC--CCCccEEE
Confidence 469999999999999998653 34555444
No 9
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=35.08 E-value=34 Score=19.82 Aligned_cols=21 Identities=14% Similarity=0.290 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCC
Q psy17823 56 AQKIDRMMECFAQRYCQLNPN 76 (92)
Q Consensus 56 sQ~IdRile~Fs~~y~~~Np~ 76 (92)
||++|++|..+.+...+.++.
T Consensus 35 SQeLD~LIn~Y~k~~~~~~~~ 55 (64)
T 2c0s_A 35 SQELDRLLNLLIELKTKKKRY 55 (64)
T ss_dssp HHHHHHHHHHHHHHHHHCSSG
T ss_pred HHHHHHHHHHHHHHHHhhhHh
Confidence 799999999999888776653
No 10
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.60 E-value=44 Score=22.74 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHhhhCC
Q psy17823 55 EAQKIDRMMECFAQRYCQLNP 75 (92)
Q Consensus 55 EsQ~IdRile~Fs~~y~~~Np 75 (92)
++.+|+.+|+.|-+.|..|..
T Consensus 88 ~~~~i~~~L~~yI~~YVlC~~ 108 (157)
T 2e9h_A 88 EANKLQDMLDGFIKKFVLCPE 108 (157)
T ss_dssp CHHHHHHHHHHHHHHTTSCTT
T ss_pred CHHHHHHHHHHHHHHeEECCC
Confidence 356999999999999998864
No 11
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=33.05 E-value=16 Score=22.08 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=13.5
Q ss_pred cCCCCCChHHHHHHHH
Q psy17823 31 LHDFTDLILVQALRQF 46 (92)
Q Consensus 31 ~fdf~~~~ld~ALR~f 46 (92)
.+|++|++++||++.+
T Consensus 10 ~lDLHGl~v~eA~~~L 25 (96)
T 2d9i_A 10 VLDLHGLHVDEALEHL 25 (96)
T ss_dssp EEECTTSCHHHHHHHH
T ss_pred eEECCCCCHHHHHHHH
Confidence 4699999999999854
No 12
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=29.93 E-value=20 Score=20.99 Aligned_cols=15 Identities=27% Similarity=0.288 Sum_probs=12.8
Q ss_pred cCCCCCChHHHHHHH
Q psy17823 31 LHDFTDLILVQALRQ 45 (92)
Q Consensus 31 ~fdf~~~~ld~ALR~ 45 (92)
.+|++|+++++|++.
T Consensus 2 ~lDLHGl~v~eA~~~ 16 (82)
T 3fau_A 2 SLDLHGLHVDEALEH 16 (82)
T ss_dssp CEECTTSCHHHHHHH
T ss_pred eEECCCCcHHHHHHH
Confidence 368999999999985
No 13
>2p5m_A Arginine repressor; alpha-beta, L-arginine binding domain, DNA binding protein; HET: ARG; 1.95A {Bacillus subtilis} SCOP: d.74.2.1
Probab=28.83 E-value=45 Score=19.81 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=24.2
Q ss_pred CCChHHHHHHHHHHHHHHHhhhCCCCC---CCCCeEEEEee
Q psy17823 52 LPGEAQKIDRMMECFAQRYCQLNPNIF---TNTAHTHRLKG 89 (92)
Q Consensus 52 LpgEsQ~IdRile~Fs~~y~~~Np~~f---~s~D~vyiLay 89 (92)
.||-+|.|-+.|+. ...|+++ ...|+|++++=
T Consensus 33 ~PG~A~~vA~~iD~------~~~~eIlGTIAGDDTIlvi~r 67 (83)
T 2p5m_A 33 MPGNAQAIGALMDN------LDWDEMMGTICGDDTILIICR 67 (83)
T ss_dssp STTCHHHHHHHHHT------TTCTTCCEEEECSSEEEEECS
T ss_pred CCCcHHHHHHHHHh------CCCCCeEEEEecCCEEEEEEC
Confidence 59999999999864 3456664 45799999864
No 14
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=28.27 E-value=87 Score=17.80 Aligned_cols=44 Identities=14% Similarity=0.100 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHH
Q psy17823 22 PSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFA 67 (92)
Q Consensus 22 ~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs 67 (92)
.+.+..+++.+.|+.--+..|++.-+..-..+ -..|++|+..+.
T Consensus 23 ~~~i~~w~~~~~~~~elI~~A~~~a~~~~~~s--~~Yi~~Il~~W~ 66 (78)
T 2zc2_A 23 LEDLQKTVSDDKTDPDLVRSALREAVFNGKTN--WNYIQAILRNWR 66 (78)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHHTCCC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHH
Confidence 36888999998999888999999876543332 367888876544
No 15
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=27.52 E-value=36 Score=22.59 Aligned_cols=20 Identities=10% Similarity=0.223 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhhhCC
Q psy17823 56 AQKIDRMMECFAQRYCQLNP 75 (92)
Q Consensus 56 sQ~IdRile~Fs~~y~~~Np 75 (92)
+.+|+.+|..|-+.|..|..
T Consensus 88 ~~~i~~~L~~yI~~yVlC~~ 107 (138)
T 1nee_A 88 HFLINERIEDYVNKFVICHE 107 (138)
T ss_dssp SSHHHHHHHHHHTHHHHHTC
T ss_pred HHHHHHHHHHHHhhEEECCC
Confidence 46899999999999999864
No 16
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A*
Probab=27.42 E-value=55 Score=19.90 Aligned_cols=31 Identities=13% Similarity=0.037 Sum_probs=20.6
Q ss_pred CCChHHHHHHHHHhhCCCCChHHHHHHHHHH
Q psy17823 35 TDLILVQALRQFLWSFRLPGEAQKIDRMMEC 65 (92)
Q Consensus 35 ~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~ 65 (92)
+|+++.+||+.......=|.-.+.++++.+.
T Consensus 27 sGv~l~~aL~~~~~~~~~~~l~~~l~~i~~~ 57 (123)
T 3c1q_A 27 SGMPLEECLRAVAEQSEKPRIRTMLVAVRAK 57 (123)
T ss_dssp TTCCHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5999999999887766444434455555543
No 17
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3
Probab=26.45 E-value=50 Score=25.46 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=25.1
Q ss_pred CCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHH
Q psy17823 34 FTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRY 70 (92)
Q Consensus 34 f~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y 70 (92)
|+.+.+.+.++.++..|.++.|. +.+|.+.|.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~f~~~~~~--l~~i~~~~~~em 37 (451)
T 1bdg_A 3 FSDQQLFEKVVEILKPFDLSVVD--YEEICDRMGESM 37 (451)
T ss_dssp CCHHHHHHHHHHHHGGGCCCHHH--HHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhcCCCHHH--HHHHHHHHHHHH
Confidence 67778888999999999988875 444444444443
No 18
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=26.22 E-value=41 Score=22.63 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=20.4
Q ss_pred hCCCCC--hHHHHHHHHHHHHHHHhhhC
Q psy17823 49 SFRLPG--EAQKIDRMMECFAQRYCQLN 74 (92)
Q Consensus 49 ~~~Lpg--EsQ~IdRile~Fs~~y~~~N 74 (92)
++.+-| .+.+|+.+|..|-+.|..|.
T Consensus 81 rlii~G~~~~~~i~~~L~~yI~~yVlC~ 108 (148)
T 2d74_B 81 RVVLQGRFTPYLIANKLKKYIKEYVICP 108 (148)
T ss_dssp EEEESSCCCHHHHHHHHHHHHHHHSSCS
T ss_pred EEEEEeeeCHHHHHHHHHHHHHHEEECC
Confidence 344555 45799999999999999885
No 19
>3b1j_C CP12; alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_C*
Probab=25.89 E-value=31 Score=16.69 Aligned_cols=10 Identities=40% Similarity=0.939 Sum_probs=8.5
Q ss_pred HHHhhhCCCC
Q psy17823 68 QRYCQLNPNI 77 (92)
Q Consensus 68 ~~y~~~Np~~ 77 (92)
+.||+.||+.
T Consensus 8 E~yC~enPea 17 (26)
T 3b1j_C 8 GDYCSENPDA 17 (26)
T ss_dssp HHHHHHCTTS
T ss_pred HHHHHHCCCc
Confidence 6899999974
No 20
>2zfz_A Arginine repressor; DNA binding protein, core, oligomeriza domain, alpha/beta topology, structural genomics; HET: ARG; 1.85A {Mycobacterium tuberculosis} PDB: 3bue_A 3cag_A*
Probab=25.69 E-value=67 Score=18.83 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=24.9
Q ss_pred CCChHHHHHHHHHHHHHHHhhhCCCCC---CCCCeEEEEeee
Q psy17823 52 LPGEAQKIDRMMECFAQRYCQLNPNIF---TNTAHTHRLKGH 90 (92)
Q Consensus 52 LpgEsQ~IdRile~Fs~~y~~~Np~~f---~s~D~vyiLay~ 90 (92)
+||-+|.|-+.|+. ...|+++ ...|+|++++=+
T Consensus 29 ~PG~A~~vA~~iD~------~~~~eIlGTIAGDDTIlvi~r~ 64 (79)
T 2zfz_A 29 PPGAAHYLASAIDR------AALPQVVGTIAGDDTILVVARE 64 (79)
T ss_dssp STTCHHHHHHHHHH------HCCTTEEEEEECSSEEEEEECT
T ss_pred CCCcHHHHHHHHHh------CCCCCeEEEEecCCEEEEEECC
Confidence 59999999999875 3456654 457999998744
No 21
>1b4b_A Arginine repressor; core, oligomerization domain, helix TUR; HET: ARG; 2.20A {Geobacillus stearothermophilus} SCOP: d.74.2.1
Probab=25.23 E-value=70 Score=18.36 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=24.6
Q ss_pred CCChHHHHHHHHHHHHHHHhhhCCCCC---CCCCeEEEEeee
Q psy17823 52 LPGEAQKIDRMMECFAQRYCQLNPNIF---TNTAHTHRLKGH 90 (92)
Q Consensus 52 LpgEsQ~IdRile~Fs~~y~~~Np~~f---~s~D~vyiLay~ 90 (92)
.||-+|.|-+.|+. ...|+++ ...|+|++++=+
T Consensus 21 ~pG~A~~va~~iD~------~~~~eI~GTIAGDDTIlvi~r~ 56 (71)
T 1b4b_A 21 LPGNAHAIGVLLDN------LDWDEIVGTICGDDTCLIICRT 56 (71)
T ss_dssp STTCHHHHHHHHHH------HCCTTEEEEEECSSEEEEEESS
T ss_pred CCCcHHHHHHHHHh------CCCCCeEEEEeeCCEEEEEECC
Confidence 69999999999875 3456654 457999988743
No 22
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=24.77 E-value=93 Score=17.13 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=16.1
Q ss_pred HHHHHHhhCCCCChH---HHHHHHH
Q psy17823 42 ALRQFLWSFRLPGEA---QKIDRMM 63 (92)
Q Consensus 42 ALR~fl~~~~LpgEs---Q~IdRil 63 (92)
||+.++..++-|.-. |+|-+||
T Consensus 2 aLqqLl~tlksp~sp~qqqqvl~IL 26 (47)
T 1zoq_C 2 ALQDLLRTLKSPSSPQQQQQVLNIL 26 (47)
T ss_dssp HHHHHHHTCCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 789999999988743 4555554
No 23
>2whn_A PILC, pilus assembly protein PILC; transport, transmembrane, pilus biogenesis, protein transpor; 2.05A {Thermus thermophilus}
Probab=22.91 E-value=45 Score=19.94 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=19.2
Q ss_pred CCChHHHHHHHHHhhCCCC---------ChH-HHHHHHHHHHHHHHhh
Q psy17823 35 TDLILVQALRQFLWSFRLP---------GEA-QKIDRMMECFAQRYCQ 72 (92)
Q Consensus 35 ~~~~ld~ALR~fl~~~~Lp---------gEs-Q~IdRile~Fs~~y~~ 72 (92)
.|.++.+||+..- .+| ||. -.++.+++..|+.|-+
T Consensus 61 ~G~sls~al~~~~---~fp~~~~~~i~~GE~sG~L~~~L~~la~~~e~ 105 (116)
T 2whn_A 61 GGMAFSEALSKHK---IFSRLYVNLVRAGETSGGLDLILDRLASFLEK 105 (116)
T ss_dssp TTCCHHHHHHTST---TSCHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHCC---CCCHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4667777776521 122 333 4666666666666543
No 24
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=22.40 E-value=2.8e+02 Score=22.43 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=39.2
Q ss_pred cCCCchhhhhhH--HHHHHHHHhcCCCCCChHHHHHHHHHhhCC------CC----------ChHHHHHHHHHHHHHHHh
Q psy17823 10 RFRDDKTIAVTV--PSVLRAFVDLHDFTDLILVQALRQFLWSFR------LP----------GEAQKIDRMMECFAQRYC 71 (92)
Q Consensus 10 g~~d~~~i~~~~--~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~------Lp----------gEsQ~IdRile~Fs~~y~ 71 (92)
+..|+..+|.|- ..+|+.+++. +++..+.++.....|. .| -...+|.+-++.|-+||+
T Consensus 555 ~q~de~~lg~Y~~~D~~L~~~~~~----~~~~~~i~~~~~~a~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~f~~rf~ 630 (680)
T 3sdb_A 555 LQSSEAKVGPFALQDFSLFQVLRY----GFRPSKIAFLAWHAWNDAERGNWPPGFPKSERPSYSLAEIRHWLQIFVQRFY 630 (680)
T ss_dssp ---CHHHHCCHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHSCTTSSCCCSSCCGGGCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCchhhcCCHHHHHHHHHHHHHC----CCCHHHHHHHHHHHhccccccccccccchhhhcCCCHHHHHHHHHHHHHHHh
Confidence 556777776553 7788888874 5666666665555442 23 134699999999999999
Q ss_pred h
Q psy17823 72 Q 72 (92)
Q Consensus 72 ~ 72 (92)
.
T Consensus 631 ~ 631 (680)
T 3sdb_A 631 S 631 (680)
T ss_dssp T
T ss_pred h
Confidence 8
No 25
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=21.81 E-value=34 Score=20.36 Aligned_cols=44 Identities=11% Similarity=0.124 Sum_probs=28.9
Q ss_pred cCCCCCChHHHHHHHHHhhCC---C---------CChHHHHHHHHHHHHHHHhhhCCCC
Q psy17823 31 LHDFTDLILVQALRQFLWSFR---L---------PGEAQKIDRMMECFAQRYCQLNPNI 77 (92)
Q Consensus 31 ~fdf~~~~ld~ALR~fl~~~~---L---------pgEsQ~IdRile~Fs~~y~~~Np~~ 77 (92)
..|.+|++.++|.+.+-..+. . .|-+. -+|...-..|.+++|.+
T Consensus 6 ~lDLhG~~~~eA~~~l~~fl~~a~~~g~~~v~IIHGkG~---GvLr~~V~~~L~~~~~V 61 (83)
T 2zqe_A 6 EVDLRGLTVAEALLEVDQALEEARALGLSTLRLLHGKGT---GALRQAIREALRRDKRV 61 (83)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHHTTCSEEEEECCSTT---SHHHHHHHHHHHHCTTE
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCc---hHHHHHHHHHHhcCCce
Confidence 468999999999885544332 1 22221 26666777888888863
No 26
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=21.48 E-value=34 Score=22.12 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=14.4
Q ss_pred hcCCCCCChHHHHHHHH
Q psy17823 30 DLHDFTDLILVQALRQF 46 (92)
Q Consensus 30 ~~fdf~~~~ld~ALR~f 46 (92)
..+|+.|+++++|++.+
T Consensus 54 ~~LDLHGl~v~EA~~~L 70 (135)
T 2vkc_A 54 NVLDLHGLHVDEALEHL 70 (135)
T ss_dssp TEEECTTCCHHHHHHHH
T ss_pred ceEEeCCCcHHHHHHHH
Confidence 35899999999999854
No 27
>3dfd_A Protein YQBN; SR445 NESG X-RAY YQBN P45930, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.20A {Bacillus subtilis} PDB: 3klu_A
Probab=20.38 E-value=84 Score=21.25 Aligned_cols=51 Identities=10% Similarity=-0.099 Sum_probs=35.2
Q ss_pred hhhhHHHHHHHHHhcCCCCCChHHHHHH-----HHHhhCCC-CChHHHHHHHHHHHH
Q psy17823 17 IAVTVPSVLRAFVDLHDFTDLILVQALR-----QFLWSFRL-PGEAQKIDRMMECFA 67 (92)
Q Consensus 17 i~~~~~~VL~~y~~~fdf~~~~ld~ALR-----~fl~~~~L-pgEsQ~IdRile~Fs 67 (92)
...|...+.-+=+-..||++..|.++.. .++..+-+ |||-+.+...+...+
T Consensus 78 ~~~y~a~lI~~atv~Pdl~nkELq~sygv~~p~eLlkkmL~~~GE~~~l~~~V~els 134 (157)
T 3dfd_A 78 SQRFYARIAVETTVYPTFKAKELREAYKTEDPVEVAKRVLSVGGEYANWLNKAIEIN 134 (157)
T ss_dssp HHHHHHHHHHHHEEESCTTCHHHHHHHTCSCHHHHHHHHSCSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCCCCCHHHHHHcCCCCHHHHHHHHhCChHHHHHHHHHHHHHh
Confidence 3345555555556678999999988876 56666668 999887766655443
No 28
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=20.18 E-value=1.6e+02 Score=19.16 Aligned_cols=30 Identities=7% Similarity=0.057 Sum_probs=17.9
Q ss_pred HHHHHHHhcCCCCCC--hHHHHHHHHHhhCCC
Q psy17823 23 SVLRAFVDLHDFTDL--ILVQALRQFLWSFRL 52 (92)
Q Consensus 23 ~VL~~y~~~fdf~~~--~ld~ALR~fl~~~~L 52 (92)
+-+..|+.....++- .+..+++.|......
T Consensus 7 ~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~ 38 (221)
T 3u81_A 7 QRILRYVQQNAKPGDPQSVLEAIDTYCTQKEW 38 (221)
T ss_dssp HHHHHHHHHHSCTTCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCc
Confidence 445666666655543 366777777665443
Done!