RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17823
         (92 letters)



>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 187

 Score = 85.7 bits (212), Expect = 3e-23
 Identities = 48/64 (75%), Positives = 53/64 (82%)

Query: 24  VLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTAH 83
           VL AFVDLH+FTDL LVQALRQFLWSFRLPG+AQKIDRMME FAQRYC  NP +F +T  
Sbjct: 64  VLHAFVDLHEFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQSTDT 123

Query: 84  THRL 87
            + L
Sbjct: 124 CYVL 127


>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella
           pneumophila [TaxId: 446]}
          Length = 197

 Score = 81.5 bits (201), Expect = 1e-21
 Identities = 28/64 (43%), Positives = 41/64 (64%)

Query: 24  VLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTAH 83
           VL+AF    +F     V+ LR FL +F+LPGEAQKIDR+++ F+  Y Q NP++ +N   
Sbjct: 72  VLKAFTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADA 131

Query: 84  THRL 87
            + L
Sbjct: 132 AYLL 135


>d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 211

 Score = 76.5 bits (188), Expect = 2e-19
 Identities = 22/60 (36%), Positives = 38/60 (63%)

Query: 23  SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTA 82
           S+L  ++ L DF+ L + +A+R  L  FRLPGE+Q+I+R++E F+  YC+      +  +
Sbjct: 74  SLLNEYIRLFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDPSKIS 133


>d3ehbb1 b.6.1.2 (B:108-252) Cytochrome c oxidase {Paracoccus
          denitrificans [TaxId: 266]}
          Length = 145

 Score = 23.9 bits (51), Expect = 3.4
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 44 RQFLWSFRLPGEAQKIDRMM 63
           Q+ WS+  P +    D +M
Sbjct: 12 HQWYWSYEYPNDGVAFDALM 31


>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
           (MetRS) {Escherichia coli [TaxId: 562]}
          Length = 350

 Score = 22.9 bits (48), Expect = 7.3
 Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 28  FVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRY 70
           F+    + +     +LR +  + +L      ID  +E F QR 
Sbjct: 302 FIKASTWLNHFDADSLRYYYTA-KLSSRIDDIDLNLEDFVQRV 343


>d2hgsa4 d.142.1.6 (A:3-201,A:304-474) Eukaryotic glutathione
           synthetase ATP-binding domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 370

 Score = 22.8 bits (49), Expect = 8.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 52  LPGEAQKIDRMMECFAQRY 70
           LPG+ + + R+   FA  Y
Sbjct: 217 LPGQPEAVARLRATFAGLY 235


>d1a34a_ b.121.7.1 (A:) STMV coat protein {Satellite tobacco
          mosaic virus [TaxId: 12881]}
          Length = 147

 Score = 22.8 bits (48), Expect = 8.9
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 1  MPFAISFSLRFRDDKTIAVTVPSVLRAFVDL 31
          +P    FS  FR D   +VTV SV RA+  L
Sbjct: 43 VPVGSLFSANFRTDSFTSVTVMSV-RAWTQL 72


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.140    0.441 

Gapped
Lambda     K      H
   0.267   0.0516    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 347,013
Number of extensions: 13581
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 10
Length of query: 92
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 36
Effective length of database: 1,638,716
Effective search space: 58993776
Effective search space used: 58993776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 47 (22.4 bits)