BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17824
(272 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 221 bits (562), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 103/176 (58%), Positives = 124/176 (70%)
Query: 1 MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLN 60
+K+ RPRC+FD+ I++ P GR+VFEL+SD+CP TCENFR LC LHY +
Sbjct: 22 IKVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKS 81
Query: 61 IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGS 120
+FHRVVK FM+Q GDFS GNG GGESIYGG FEDE+F +KH+ FLLSMANRGKDTNGS
Sbjct: 82 CLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGS 141
Query: 121 QFFITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
QFFITT+P PHLD SGQ VV IEN D S+P +VR++ C EL+
Sbjct: 142 QFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGELI 197
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 221 bits (562), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 103/175 (58%), Positives = 124/175 (70%)
Query: 1 MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLN 60
+K+ RPRC+FD+ I++ P GR+VFEL+SD+CP TCENFR LC LHY +
Sbjct: 5 IKVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKS 64
Query: 61 IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGS 120
+FHRVVK FM+Q GDFS GNG GGESIYGG FEDE+F +KH++ FLLSMANRGKDTNGS
Sbjct: 65 XLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGS 124
Query: 121 QFFITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
QFFITT+P PHLD SGQ VV IEN D S+P +VR++ C EL
Sbjct: 125 QFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 221 bits (562), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 103/175 (58%), Positives = 124/175 (70%)
Query: 1 MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLN 60
+K+ RPRC+FD+ I++ P GR+VFEL+SD+CP TCENFR LC LHY +
Sbjct: 5 IKVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKS 64
Query: 61 IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGS 120
+FHRVVK FM+Q GDFS GNG GGESIYGG FEDE+F +KH++ FLLSMANRGKDTNGS
Sbjct: 65 CLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGS 124
Query: 121 QFFITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
QFFITT+P PHLD SGQ VV IEN D S+P +VR++ C EL
Sbjct: 125 QFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 207 bits (526), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 102/171 (59%), Positives = 115/171 (67%)
Query: 6 PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHR 65
P+C+FD+EI+ P+GRI+F+L+SDICP TC+NF LC L Y FHR
Sbjct: 20 PQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHR 79
Query: 66 VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
VVK FMIQ GDFS GNG GGESIYGG F+DENF LKHD FLLSMANRGK TNGSQFFIT
Sbjct: 80 VVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFIT 139
Query: 126 TQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
T+PAPHLD SG V+ IENL D SRP DVRV+ C L
Sbjct: 140 TKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLA 190
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 190 bits (483), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 94/172 (54%), Positives = 111/172 (64%)
Query: 5 RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFH 64
R R + DV I GRIV ELY+DI P TC NF LC LHY FH
Sbjct: 6 RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFH 65
Query: 65 RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFI 124
RV+K FMIQ GDF+ G+GTGGESIYGG F+DE F +KHDEPF++SMAN+G +TNGSQFFI
Sbjct: 66 RVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFI 125
Query: 125 TTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
TT PAPHL+ SGQ VV+ IE L + +RPL DV ++ C ELV
Sbjct: 126 TTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGELV 177
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 170 bits (431), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 88/170 (51%), Positives = 104/170 (61%), Gaps = 1/170 (0%)
Query: 6 PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHR 65
PR +FDV+I +GRIV EL++DI P T ENFRALC LH+ FHR
Sbjct: 16 PRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHR 75
Query: 66 VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
++K FMIQ GDFS NGTGGESIYG FEDENF KHD+ LLSMAN G +TNGSQFFIT
Sbjct: 76 IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFIT 135
Query: 126 TQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
T P PHLD G V +EN+ V K +P + + +C EL
Sbjct: 136 TVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGEL 184
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 160 bits (405), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 84/171 (49%), Positives = 102/171 (59%), Gaps = 3/171 (1%)
Query: 5 RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFH 64
R + +FD+ I + GRI+FEL+SDI P TCENFRALC NLHY N +FH
Sbjct: 3 RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGK--NLHYKNSIFH 60
Query: 65 RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFI 124
R++ FM Q GD + GNG+GGESIYG +F DENF +KHD+P LLSMAN G +TN SQFFI
Sbjct: 61 RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFI 120
Query: 125 TTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
T P P LD G NVV +E K + V + C EL
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYVKRSVVITDCGEL 170
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 157 bits (396), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 100/171 (58%), Gaps = 3/171 (1%)
Query: 5 RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFH 64
R + +FD+ I + GRI+FEL+SDI P TCENFRALC NLHY N +FH
Sbjct: 3 RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGK--NLHYKNSIFH 60
Query: 65 RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFI 124
R++ FM Q GD + GNG+GGESIYG +F DENF +KHD+P LLSMAN G +TN SQF I
Sbjct: 61 RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLI 120
Query: 125 TTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
T P P LD G NVV +E K + V + C E
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYVKRSVVITDCGEW 170
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/169 (49%), Positives = 100/169 (59%), Gaps = 9/169 (5%)
Query: 7 RCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRV 66
+ YFDVE P+GR+VF+LY+DI P T ENFRALC Y FHRV
Sbjct: 3 QVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEK--------GFGYAGSPFHRV 54
Query: 67 VKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITT 126
+ FM+Q GDF+ GNGTGG+SIYGG F DENF+ HD P LLSMAN G +TNGSQFFITT
Sbjct: 55 IPDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITT 114
Query: 127 QPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
P P LD G ++V +E+L + + V V K EL
Sbjct: 115 VPCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIV-VAKSGEL 162
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/149 (53%), Positives = 87/149 (58%), Gaps = 1/149 (0%)
Query: 6 PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHR 65
P YFD+ I P GRI EL++D PIT ENFRALC L Y FHR
Sbjct: 20 PVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKP-LCYTGSFFHR 78
Query: 66 VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
++ FMIQ GDF+ G+GTGGESIYG F DENF HD PFLLSMAN G +TNGSQFFIT
Sbjct: 79 IIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFIT 138
Query: 126 TQPAPHLDXXXXXXXXXXSGQNVVSHIEN 154
T P P LD G VV IE
Sbjct: 139 TVPCPWLDGKHVVFGKVLEGMEVVKSIEK 167
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 96/169 (56%), Gaps = 8/169 (4%)
Query: 7 RCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRV 66
+ YFD+ I D +GR++F L+ P T +NF AL Y N FHRV
Sbjct: 17 KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEK--------GFGYKNSKFHRV 68
Query: 67 VKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITT 126
+K FMIQ GDF+ G+GTGG+SIYG F DENF+LKH P +SMAN GKDTNGSQFFITT
Sbjct: 69 IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 128
Query: 127 QPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
LD G VV +E+ D +PL+DV + C ++
Sbjct: 129 VKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 177
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 96/169 (56%), Gaps = 8/169 (4%)
Query: 7 RCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRV 66
+ YFD+ I D +GR++F L+ P T +NF AL Y N FHRV
Sbjct: 7 KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEK--------GFGYKNSKFHRV 58
Query: 67 VKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITT 126
+K FMIQ GDF+ G+GTGG+SIYG F DENF+LKH P +SMAN GKDTNGSQFFITT
Sbjct: 59 IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 118
Query: 127 QPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
LD G VV +E+ D +PL+DV + C ++
Sbjct: 119 VKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 167
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 147 bits (370), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 94/169 (55%), Gaps = 8/169 (4%)
Query: 7 RCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRV 66
+ YFD+ I D +GR+V L+ P T +NF AL Y + FHRV
Sbjct: 14 KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEK--------GFGYKDSKFHRV 65
Query: 67 VKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITT 126
+K FMIQ GDF+ G+GTGG+SIYG F DENF+LKH P +SMAN GKDTNGSQFFITT
Sbjct: 66 IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 125
Query: 127 QPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
LD G VV +E D +PL+DV + C ++
Sbjct: 126 VKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKI 174
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 94/169 (55%), Gaps = 8/169 (4%)
Query: 7 RCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRV 66
+ YFD+ I D +GR+V L+ P T +NF AL Y + FHRV
Sbjct: 14 KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEK--------GFGYKDSKFHRV 65
Query: 67 VKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITT 126
+K FMIQ GDF+ G+GTGG+SIYG F DENF+LKH P +SMAN GKDTNGSQFFITT
Sbjct: 66 IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 125
Query: 127 QPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
LD G VV +E D +PL+DV + C ++
Sbjct: 126 VKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKI 174
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/171 (46%), Positives = 99/171 (57%), Gaps = 9/171 (5%)
Query: 6 PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHR 65
PR +FD+ I + GRIV EL SDI P T ENFRALC Y N FHR
Sbjct: 11 PRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGER--------GFGYHNCCFHR 62
Query: 66 VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
V+ FM Q GDF G+GTGG+SIYG F+DENF+L+H+ +LSMAN G +TNGSQFFI
Sbjct: 63 VIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFIC 122
Query: 126 TQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
T LD GQNVV +E++ K + + V + +C EL+
Sbjct: 123 TTKCDWLDGKHVVFGRVVDGQNVVKKMESVG-SKSGKVKEPVIISRCGELI 172
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 92/164 (56%), Gaps = 9/164 (5%)
Query: 9 YFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVK 68
+FD+ + PLG I F+L+ D+ P T NFRALC Y FHRV+
Sbjct: 5 FFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEK--------GFGYAGSHFHRVIP 56
Query: 69 GFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQP 128
FM+Q GDF+ GNGTGG+SIYG F DENF+LKH++P LLSMAN G +TNGSQFFITT
Sbjct: 57 DFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVV 116
Query: 129 APHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKC 172
LD G NVV IE +P + + KC
Sbjct: 117 TSWLDGKHVVFGEVIDGMNVVKAIE-AEGSGSGKPRSRIEIAKC 159
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 96/177 (54%), Gaps = 5/177 (2%)
Query: 3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIV 62
+ P+ +FD+ I + GRIV ELY+D P T ENFRALC LHY + V
Sbjct: 5 MTNPKVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKP-LHYKSSV 63
Query: 63 FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELK---HDEPFLLSMANRGKDTNG 119
FHRV+ FMIQ GDF+ GNGTGGESIYG TF DE+F K H LSMAN G +TNG
Sbjct: 64 FHRVIPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNG 123
Query: 120 SQFFITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
SQFFI T P LD G +VV +E L + + V C E+
Sbjct: 124 SQFFICTAATPWLDGKHVVFGRVIDGLDVVKKVERLG-SSSGKTRSRIVVSDCGEVA 179
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 97/173 (56%), Gaps = 2/173 (1%)
Query: 3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIV 62
+ R + +FD+ I GRIV ELY D+ P T NFRALC LH+
Sbjct: 1 MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKP-LHFKGSK 59
Query: 63 FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
FHR++ FMIQ GDF+ GNGTGGESIYG F DENF+ KH P +LSMAN G +TNGSQF
Sbjct: 60 FHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQF 119
Query: 123 FITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
F+ T LD G +VV +E+ + +P++D + C +L
Sbjct: 120 FLCTVKTEWLDGKHVVFGRVVEGLDVVKAVES-NGSQSGKPVKDCMIADCGQL 171
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 97/174 (55%), Gaps = 13/174 (7%)
Query: 4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVF 63
+ + YFDV I PLGRI L+ P+T ENFR LC Y + +F
Sbjct: 10 VTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEH--------GFGYKDSIF 61
Query: 64 HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFL--LSMANRGKDTNGSQ 121
HRV++ FMIQ GDF+ +GTGG+SIYG F DEN +KH F+ LSMAN G +TNGSQ
Sbjct: 62 HRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH---FVGALSMANAGPNTNGSQ 118
Query: 122 FFITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
FFITT P P LD G +VV IE + RP++ V++V EL
Sbjct: 119 FFITTAPTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 97/174 (55%), Gaps = 13/174 (7%)
Query: 4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVF 63
+ + YFDV I PLGRI L+ P+T ENFR LC Y + +F
Sbjct: 10 VTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEH--------GFGYKDSIF 61
Query: 64 HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFL--LSMANRGKDTNGSQ 121
HRV++ FMIQ GDF+ +GTGG+SIYG F DEN +KH F+ LSMAN G +TNGSQ
Sbjct: 62 HRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH---FVGALSMANAGPNTNGSQ 118
Query: 122 FFITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
FFITT P P LD G +VV IE + RP++ V++V EL
Sbjct: 119 FFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 94/173 (54%), Gaps = 9/173 (5%)
Query: 3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIV 62
++ P +FD+ + PLGR+ FEL++D P T ENFRAL Y
Sbjct: 20 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEK--------GFGYKGSC 71
Query: 63 FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
FHR++ GFM Q GDF+ NGTGG+SIYG FEDENF LKH P +LSMAN G +TNGSQF
Sbjct: 72 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 131
Query: 123 FITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
FI T LD G N+V +E + + + + + C +L
Sbjct: 132 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 183
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 94/173 (54%), Gaps = 9/173 (5%)
Query: 3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIV 62
++ P +FD+ + PLGR+ FEL++D P T ENFRAL Y
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRAL--------STGEKGFGYKGSC 52
Query: 63 FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
FHR++ GFM Q GDF+ NGTGG+SIYG FEDENF LKH P +LSMAN G +TNGSQF
Sbjct: 53 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 123 FITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
FI T LD G N+V +E + + + + + C +L
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 164
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 95/173 (54%), Gaps = 9/173 (5%)
Query: 3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIV 62
++ P +FD+ + PLGR+ FEL++D P T ENFRAL Y
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRAL--------STGEKGFGYKGSC 52
Query: 63 FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
FHR++ GFM Q GDF+ NGTGG+SIYG FEDENF LKH P +LSMAN G +TNGSQF
Sbjct: 53 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 123 FITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
FI T LD G N+V +E + + + + + C +L
Sbjct: 113 FICTAKTKWLDGXHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 164
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 94/173 (54%), Gaps = 9/173 (5%)
Query: 3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIV 62
++ P +FD+ + PLGR+ FEL++D P T ENFRAL Y
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRAL--------STGEKGFGYKGSC 52
Query: 63 FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
FHR++ GFM Q GDF+ NGTGG+SIYG FEDENF LKH P +LSMAN G +TNGSQF
Sbjct: 53 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 123 FITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
FI T LD G N+V +E + + + + + C +L
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 164
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 94/173 (54%), Gaps = 9/173 (5%)
Query: 3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIV 62
++ P +FD+ + PLGR+ FEL++D P T ENFRAL Y
Sbjct: 9 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEK--------GFGYKGSC 60
Query: 63 FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
FHR++ GFM Q GDF+ NGTGG+SIYG FEDENF LKH P +LSMAN G +TNGSQF
Sbjct: 61 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 120
Query: 123 FITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
FI T LD G N+V +E + + + + + C +L
Sbjct: 121 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 172
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 95/173 (54%), Gaps = 9/173 (5%)
Query: 3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIV 62
++ P +FD+ + PLGR+ FEL++D P T ENFRAL Y
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRAL--------STGEKGFGYKGSC 52
Query: 63 FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
FHR++ GFM Q GDF+ NGTGG+SIYG FEDENF LKH P +LSMAN G +TNGSQF
Sbjct: 53 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 123 FITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
FI T LD G N+V +E + + + + + C +L
Sbjct: 113 FICTAKTEWLDGXHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 164
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 93/172 (54%), Gaps = 9/172 (5%)
Query: 4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVF 63
+ P +FD+ + PLGR+ FEL++D P T ENFRAL Y F
Sbjct: 1 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRAL--------STGEKGFGYKGSCF 52
Query: 64 HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
HR++ GFM Q GDF+ NGTGG+SIYG FEDENF LKH P +LSMAN G +TNGSQFF
Sbjct: 53 HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 112
Query: 124 ITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
I T LD G N+V +E + + + + + C +L
Sbjct: 113 ICTAKTKWLDGKHVVFGAVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 163
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 137 bits (346), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 94/173 (54%), Gaps = 9/173 (5%)
Query: 3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIV 62
++ P +FD+ + PLGR+ FEL++D P T ENFRAL Y
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEK--------GFGYKGSC 52
Query: 63 FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
FHR++ GFM Q GDF+ NGTGG+SIYG FEDENF LKH P +L+MAN G +TNGSQF
Sbjct: 53 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQF 112
Query: 123 FITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
FI T LD G N+V +E + + + + + C +L
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 164
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 137 bits (346), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 93/172 (54%), Gaps = 9/172 (5%)
Query: 4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVF 63
+ P +FD+ + PLGR+ FEL++D P T ENFRAL Y F
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRAL--------STGEKGFGYKGSCF 53
Query: 64 HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
HR++ GFM Q GDF+ NGTGG+SIYG FEDENF LKH P +LSMAN G +TNGSQFF
Sbjct: 54 HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 124 ITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
I T LD G N+V +E + + + + + C +L
Sbjct: 114 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 164
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 137 bits (346), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 93/172 (54%), Gaps = 9/172 (5%)
Query: 4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVF 63
+ P +FD+ + PLGR+ FEL++D P T ENFRAL Y F
Sbjct: 1 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRAL--------STGEKGFGYKGSCF 52
Query: 64 HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
HR++ GFM Q GDF+ NGTGG+SIYG FEDENF LKH P +LSMAN G +TNGSQFF
Sbjct: 53 HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 112
Query: 124 ITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
I T LD G N+V +E + + + + + C +L
Sbjct: 113 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 163
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 137 bits (346), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 93/170 (54%), Gaps = 9/170 (5%)
Query: 6 PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHR 65
P Y DV+ + PLGR+V EL +D+ P T ENFRALC Y FHR
Sbjct: 5 PLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEK--------GFGYKGSTFHR 56
Query: 66 VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
V+ FM Q+GDF+ NGTGG+SIYG F DENF LKH P +LSMAN G +TNGSQFFI
Sbjct: 57 VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 116
Query: 126 TQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
T LD G +VV IE+ K R + + + C +L
Sbjct: 117 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFG-SKSGRTSKKIVITDCGQL 165
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 137 bits (345), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 94/173 (54%), Gaps = 9/173 (5%)
Query: 3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIV 62
++ P +FD+ + PLGR+ FEL++D P T ENFRAL Y
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRAL--------STGEKGFGYKGSC 52
Query: 63 FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
FH+++ GFM Q GDF+ NGTGG+SIYG FEDENF LKH P +LSMAN G +TNGSQF
Sbjct: 53 FHKIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 123 FITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
FI T LD G N+V +E + + + + + C +L
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 164
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 137 bits (345), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 93/170 (54%), Gaps = 9/170 (5%)
Query: 6 PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHR 65
P Y DV+ + PLGR+V EL +D+ P T ENFRALC Y FHR
Sbjct: 4 PLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEK--------GFGYKGSTFHR 55
Query: 66 VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
V+ FM Q+GDF+ NGTGG+SIYG F DENF LKH P +LSMAN G +TNGSQFFI
Sbjct: 56 VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 115
Query: 126 TQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
T LD G +VV IE+ K R + + + C +L
Sbjct: 116 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFG-SKSGRTSKKIVITDCGQL 164
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 137 bits (345), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 93/170 (54%), Gaps = 9/170 (5%)
Query: 6 PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHR 65
P Y DV+ + PLGR+V EL +D+ P T ENFRALC Y FHR
Sbjct: 4 PLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEK--------GFGYKGSTFHR 55
Query: 66 VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
V+ FM Q+GDF+ NGTGG+SIYG F DENF LKH P +LSMAN G +TNGSQFFI
Sbjct: 56 VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 115
Query: 126 TQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
T LD G +VV IE+ K R + + + C +L
Sbjct: 116 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFG-SKSGRTSKKIVITDCGQL 164
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 137 bits (345), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 93/170 (54%), Gaps = 9/170 (5%)
Query: 6 PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHR 65
P Y DV+ + PLGR+V EL +D+ P T ENFRALC Y FHR
Sbjct: 3 PLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEK--------GFGYKGSTFHR 54
Query: 66 VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
V+ FM Q+GDF+ NGTGG+SIYG F DENF LKH P +LSMAN G +TNGSQFFI
Sbjct: 55 VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 114
Query: 126 TQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
T LD G +VV IE+ K R + + + C +L
Sbjct: 115 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFG-SKSGRTSKKIVITDCGQL 163
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 137 bits (344), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 94/172 (54%), Gaps = 9/172 (5%)
Query: 4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVF 63
+ P +FD+ + PLGR+ FEL++D P T ENFRAL Y F
Sbjct: 6 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEK--------GFGYKGSCF 57
Query: 64 HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
HR++ GFM Q GDF+ NGTGG+SIYG FEDENF LKH P +LSMAN G +TNGSQFF
Sbjct: 58 HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 117
Query: 124 ITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
I T LD G N+V +E + + + + + C +L
Sbjct: 118 ICTAKTKWLDGXHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 168
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 94/173 (54%), Gaps = 9/173 (5%)
Query: 3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIV 62
++ P +FD+ + PLGR+ FEL++D P T ENFRAL Y
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRAL--------STGEKGFGYKGSC 52
Query: 63 FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
FHR++ GFM Q G+F+ NGTGG+SIYG FEDENF LKH P +LSMAN G +TNGSQF
Sbjct: 53 FHRIIPGFMCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 123 FITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
FI T LD G N+V +E + + + + + C +L
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 164
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 94/173 (54%), Gaps = 9/173 (5%)
Query: 3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIV 62
++ P +FD+ + PLGR+ FEL++D P T ENFRAL Y
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRAL--------STGEKGFGYKGSC 52
Query: 63 FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
FHR++ GFM Q G+F+ NGTGG+SIYG FEDENF LKH P +LSMAN G +TNGSQF
Sbjct: 53 FHRIIPGFMCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 123 FITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
FI T LD G N+V +E + + + + + C +L
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 164
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 93/172 (54%), Gaps = 9/172 (5%)
Query: 4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVF 63
+ P +FD+ + PLGR+ FEL++D P T ENFRAL Y F
Sbjct: 1 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRAL--------STGEKGFGYKGSCF 52
Query: 64 HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
HR++ GFM Q GDF+ NGTGG+SIYG FEDENF LKH P +LSMAN G +TNGSQFF
Sbjct: 53 HRIIPGFMCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 112
Query: 124 ITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
I T LD G N+V ++ + + + + + C +L
Sbjct: 113 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMKRFG-SRNGKTSKKITIADCGQL 163
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 86/170 (50%), Gaps = 8/170 (4%)
Query: 7 RCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRV 66
R YFD+EI P+GRIV L+ P T NF L Y FHRV
Sbjct: 8 RVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG--------YPGSKFHRV 59
Query: 67 VKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITT 126
+ FMIQ GDF+ G+GTGG SIYG F DENF+LKH LSMAN G DTNGSQFFITT
Sbjct: 60 IADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITT 119
Query: 127 QPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
P LD G +VV IE RP QDV + +
Sbjct: 120 VKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIA 169
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 91/172 (52%), Gaps = 8/172 (4%)
Query: 4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVF 63
+ + +FDV I D +GRIV L+ ++ P T ENF AL Y +F
Sbjct: 6 VTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEK--------GYGYKGSIF 57
Query: 64 HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
HRV+K FMIQ GDF+ +GTGG SIYG TF DENF+LKH +SMAN G DTNGSQFF
Sbjct: 58 HRVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFF 117
Query: 124 ITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
IT LD G VV IE D RPL D +V ++
Sbjct: 118 ITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKI 169
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 134 bits (336), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 88/146 (60%), Gaps = 8/146 (5%)
Query: 8 CYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVV 67
+F++ I+D P GRIVF+LY + P T +NFR L Y + +FHRV+
Sbjct: 5 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQH--------GFGYKDSIFHRVI 56
Query: 68 KGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQ 127
FM+Q GDF+ NGTGG+SIYG F DENF++KH +P LLSMAN G +TNGSQFFITT
Sbjct: 57 PQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTV 116
Query: 128 PAPHLDXXXXXXXXXXSGQNVVSHIE 153
P LD G ++V +E
Sbjct: 117 PTSWLDGKHVVFGEVIEGLDIVRKVE 142
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 134 bits (336), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 88/146 (60%), Gaps = 8/146 (5%)
Query: 8 CYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVV 67
+F++ I+D P GRIVF+LY + P T +NFR L Y + +FHRV+
Sbjct: 6 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQH--------GFGYKDSIFHRVI 57
Query: 68 KGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQ 127
FM+Q GDF+ NGTGG+SIYG F DENF++KH +P LLSMAN G +TNGSQFFITT
Sbjct: 58 PQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTV 117
Query: 128 PAPHLDXXXXXXXXXXSGQNVVSHIE 153
P LD G ++V +E
Sbjct: 118 PTSWLDGKHVVFGEVIEGLDIVRKVE 143
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 134 bits (336), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 92/172 (53%), Gaps = 3/172 (1%)
Query: 4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVF 63
+ P +FDV I +GR+ EL++D+ P T ENFR C + Y F
Sbjct: 9 VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVP---IGYKGSTF 65
Query: 64 HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
HRV+K FMIQ GDF G+GTG SIY G F DENF+L+H P LLSMAN G TNG QFF
Sbjct: 66 HRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFF 125
Query: 124 ITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
IT LD G V+ IEN+P ++P V + +C E+
Sbjct: 126 ITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 92/171 (53%), Gaps = 9/171 (5%)
Query: 6 PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHR 65
P+ Y D++I + P GRI L SD+ P+T ENFR LC + FHR
Sbjct: 12 PQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEK--------GFGFKGSSFHR 63
Query: 66 VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
++ FM Q GDF+ NGTGG+SIYG F+DENF LKH P LLSMAN G +TNGSQFF+T
Sbjct: 64 IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 123
Query: 126 TQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
LD G +V+ IE K +P Q V + C E V
Sbjct: 124 CDKTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKPKQKVIIADCGEYV 173
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 98/173 (56%), Gaps = 9/173 (5%)
Query: 3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIV 62
+ P +FDV PLGRI EL+S+I P T ENFRALC + N +
Sbjct: 4 MTNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEK--------GFGFKNSI 55
Query: 63 FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
FHRV+ F+ Q GD + +GTGG+SIYG FEDENF++KH P LLSMAN+G++TN SQF
Sbjct: 56 FHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQF 115
Query: 123 FITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
IT + A HLD G + V IE+ K S + + + +C ++
Sbjct: 116 VITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGS-VCRRITITECGQI 167
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 92/171 (53%), Gaps = 9/171 (5%)
Query: 6 PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHR 65
P+ Y D++I + P GRI L SD+ P+T ENFR LC + FHR
Sbjct: 4 PQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEK--------GFGFKGSSFHR 55
Query: 66 VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
++ FM Q GDF+ NGTGG+SIYG F+DENF LKH P LLSMAN G +TNGSQFF+T
Sbjct: 56 IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 115
Query: 126 TQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
LD G +V+ IE K +P Q V + C E V
Sbjct: 116 CDKTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKPKQKVIIADCGEYV 165
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 99/177 (55%), Gaps = 13/177 (7%)
Query: 1 MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLN 60
M ++ + YFD+ I D P+GR+V L+ + P T ENF+ L Y
Sbjct: 1 MPVVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGEN--------GFGYKG 52
Query: 61 IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFL--LSMANRGKDTN 118
+FHRV++ FMIQ GDF+ +GTGG+SIYG F+DEN ++KH F+ +SMAN G ++N
Sbjct: 53 SIFHRVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKH---FVGAVSMANAGPNSN 109
Query: 119 GSQFFITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
GSQFF+TT P P LD G +VV +EN +P + V++ C L
Sbjct: 110 GSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 90/172 (52%), Gaps = 9/172 (5%)
Query: 4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVF 63
+ P +FD+ + PLGR+ FEL++D P T ENFRAL Y F
Sbjct: 1 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRAL--------STGEKGFGYKGSCF 52
Query: 64 HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
HR++ GF Q GDF+ NGTGG+SIYG FEDENF LKH P +LS AN G +TNGSQFF
Sbjct: 53 HRIIPGFXCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFF 112
Query: 124 ITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
I T LD G N+V E + + + + + C +L
Sbjct: 113 ICTAKTEWLDGKHVVFGKVKEGXNIVEAXERFG-SRNGKTSKKITIADCGQL 163
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 89/172 (51%), Gaps = 8/172 (4%)
Query: 4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVF 63
+ + +FDV I D +GRIV L+ + P T ENF AL Y F
Sbjct: 14 VTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEK--------GYGYKGSKF 65
Query: 64 HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
HRV+K FMIQ GD + G+GTGG SIYG TF DENF+LKH +SMAN G DTNGSQFF
Sbjct: 66 HRVIKDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFF 125
Query: 124 ITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
IT LD G VV IE D RPL + ++ ++
Sbjct: 126 ITLTKPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKI 177
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 89/171 (52%), Gaps = 9/171 (5%)
Query: 6 PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHR 65
P+ Y D++I + P GRI L SD+ P T ENFR LC + FHR
Sbjct: 13 PQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEK--------GFGFKGSSFHR 64
Query: 66 VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
++ F Q GDF+ NGTGG+SIYG F+DENF LKH P LLS AN G +TNGSQFF+T
Sbjct: 65 IIPQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFFLT 124
Query: 126 TQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
LD G +V+ IE K +P Q V + C E V
Sbjct: 125 CDKTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKPKQKVIIADCGEYV 174
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 97/173 (56%), Gaps = 6/173 (3%)
Query: 6 PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHR 65
P + D+ + + LG+ FEL+ +I P T ENFR C + Y N +FHR
Sbjct: 60 PVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLP---VGYKNTIFHR 116
Query: 66 VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
V+K FMIQ GDF NG+G SIYG F+DENF++KHD+ LLSMAN G +TNG QFFIT
Sbjct: 117 VIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFIT 176
Query: 126 TQPAPHLDXXXXXXXXXXSGQN--VVSHIENLPVDK-MSRPLQDVRVVKCNEL 175
T+ LD + ++ IEN+ V + +P + VV+C EL
Sbjct: 177 TKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 124 bits (311), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 80/144 (55%), Gaps = 8/144 (5%)
Query: 9 YFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVK 68
YFDV ++ LGRIV +L DI P T +NFR LC Y FHR++
Sbjct: 31 YFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG--------YKGSTFHRIIP 82
Query: 69 GFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQP 128
GFM+Q GD++ NGTGG SIYG F DENFELKH + +LSMAN G TNGSQFFIT
Sbjct: 83 GFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGK 142
Query: 129 APHLDXXXXXXXXXXSGQNVVSHI 152
LD G +VV I
Sbjct: 143 TQWLDEKHVVFGEVVEGMDVVHKI 166
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 7 RCYFDVE-----ISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNI 61
+ +FDVE ++ +GRIVF L+ P T +NFR LC Y
Sbjct: 4 QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG--------YRES 55
Query: 62 VFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQ 121
FHR++ FMIQ GDF+ GNGTGG SIYG F DENF KHD+ +LSMAN G +TNGSQ
Sbjct: 56 TFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQ 115
Query: 122 FFITTQPAPHLDXXXX--XXXXXXSGQNVVSHIENLPVDKMS-RPLQDVRVVKCNEL 175
FFITT LD +VV IE L S R ++V C EL
Sbjct: 116 FFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 121 bits (303), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 90/153 (58%), Gaps = 13/153 (8%)
Query: 19 LGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFS 78
+G I L+ C T +NF N +Y N +FHRV+K FM+Q+GD S
Sbjct: 14 MGDIHISLFYKECKKTVQNFSV-----------HSINGYYNNCIFHRVIKHFMVQTGDPS 62
Query: 79 VGNGTGGESIYGGTFEDENFE-LKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDXXXX 137
G+GTGGESI+G FEDE F+ L H +PF++SMAN G +TNGSQFFITT P P LD
Sbjct: 63 -GDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHT 121
Query: 138 XXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVV 170
G +V IE + DK +PL+D++++
Sbjct: 122 VFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKIL 154
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 121 bits (303), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 91/167 (54%), Gaps = 14/167 (8%)
Query: 6 PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHR 65
P+ D I +G I +L+ CP T ENF C N +Y FHR
Sbjct: 17 PKRVSDSAIIHTSMGDIHTKLFPVECPKTVENF---CVHSR--------NGYYNGHTFHR 65
Query: 66 VVKGFMIQSGDFSVGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFI 124
++KGFMIQ+GD G G GGESI+GG FEDE + L+HD P+ LSMAN G +TNGSQFFI
Sbjct: 66 IIKGFMIQTGD-PTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFI 124
Query: 125 TTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVD-KMSRPLQDVRVV 170
T P P LD G VV I N+ V+ K +P +DV ++
Sbjct: 125 TVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSII 171
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 114 bits (285), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 85/153 (55%), Gaps = 14/153 (9%)
Query: 19 LGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFS 78
+G I E++ + P TCENF ALC +Y +FHR +KGFM+Q+GD
Sbjct: 9 VGDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGD-P 56
Query: 79 VGNGTGGESIYGGTFEDENFE-LKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDXXXX 137
G G GG SI+G FEDE E LKH+ ++SMAN G +TNGSQFFIT PHLD
Sbjct: 57 TGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYT 116
Query: 138 XXXXXXSGQNVVSHIENLPV-DKMSRPLQDVRV 169
G + +E LPV +K RPL DV +
Sbjct: 117 VFGKVIDGLETLDELEKLPVNEKTYRPLNDVHI 149
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 114 bits (284), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 85/153 (55%), Gaps = 14/153 (9%)
Query: 19 LGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFS 78
+G I E++ + P TCENF ALC +Y +FHR +KGFM+Q+GD
Sbjct: 15 VGDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGD-P 62
Query: 79 VGNGTGGESIYGGTFEDENFE-LKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDXXXX 137
G G GG SI+G FEDE E LKH+ ++SMAN G +TNGSQFFIT PHLD
Sbjct: 63 TGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYT 122
Query: 138 XXXXXXSGQNVVSHIENLPV-DKMSRPLQDVRV 169
G + +E LPV +K RPL DV +
Sbjct: 123 VFGKVIDGLETLDELEKLPVNEKTYRPLNDVHI 155
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 82/159 (51%), Gaps = 13/159 (8%)
Query: 19 LGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFS 78
LG ELY P TC NF LC Y N +FHRV+ F+IQ GD
Sbjct: 47 LGDFEVELYWYHSPKTCLNFYTLCEMGF-----------YDNTIFHRVIPNFVIQGGD-P 94
Query: 79 VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDXXXX 137
G G GG+SIYG FEDE N ELKH +LSM+N G +TN SQFFIT P PHLD
Sbjct: 95 TGTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHT 154
Query: 138 XXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
+ +I ++ ++P+ D+++++ + V
Sbjct: 155 IFARVSKNMTCIENIASVQTTATNKPIFDLKILRTSTAV 193
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 85/155 (54%), Gaps = 17/155 (10%)
Query: 20 GRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFSV 79
G + FEL+ CP C+NF AL +Y N +FH+ +KGF+IQ GD
Sbjct: 26 GDLKFELFCSQCPKACKNFLALSASG-----------YYKNTIFHKNIKGFIIQGGD-PT 73
Query: 80 GNGTGGESIYGGTFEDENF-ELKHDEPFLLSMANRGK----DTNGSQFFITTQPAPHLDX 134
G G GGESIYG F+DE + ELK+D +LSMA++G +TNGSQFFIT P L+
Sbjct: 74 GTGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNG 133
Query: 135 XXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRV 169
G ++ +EN P DK +P+ ++ +
Sbjct: 134 EYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIII 168
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 80/155 (51%), Gaps = 13/155 (8%)
Query: 19 LGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFS 78
+G IV ELY P TC+NF L +Y FHR++K FMIQ GD
Sbjct: 20 MGIIVLELYWKHAPKTCKNFAELARRG-----------YYNGTKFHRIIKDFMIQGGD-P 67
Query: 79 VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDXXXX 137
G G GG SIYG FEDE + +LK +L+MAN G DTNGSQFF+T P LD
Sbjct: 68 TGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHT 127
Query: 138 XXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKC 172
G +V+ + + + RP+ DV+++K
Sbjct: 128 IFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA 162
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 80/155 (51%), Gaps = 13/155 (8%)
Query: 19 LGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFS 78
+G IV ELY P TC+NF L +Y FHR++K FMIQ GD
Sbjct: 20 MGIIVLELYWKHAPKTCKNFAELARRG-----------YYNGTKFHRIIKDFMIQGGD-P 67
Query: 79 VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDXXXX 137
G G GG SIYG FEDE + +LK +L+MAN G DTNGSQFF+T P LD
Sbjct: 68 TGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHT 127
Query: 138 XXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKC 172
G +V+ + + + RP+ DV+++K
Sbjct: 128 IFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA 162
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 80/155 (51%), Gaps = 13/155 (8%)
Query: 19 LGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFS 78
+G IV ELY P TC+NF L +Y FHR++K FMIQ GD
Sbjct: 20 MGIIVLELYWKHAPKTCKNFAELARRG-----------YYNGTKFHRIIKDFMIQGGD-P 67
Query: 79 VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDXXXX 137
G G GG SIYG FEDE + +LK +L+MAN G DTNGSQFF+T P LD
Sbjct: 68 TGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHT 127
Query: 138 XXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKC 172
G +V+ + + + RP+ DV+++K
Sbjct: 128 IFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA 162
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 77/159 (48%), Gaps = 16/159 (10%)
Query: 20 GRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFSV 79
G I EL+S P C NF LC +Y N +FHRVV GF++Q GD
Sbjct: 34 GDIDIELWSKEAPKACRNFIQLCL-----------EAYYDNTIFHRVVPGFIVQGGD-PT 81
Query: 80 GNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDXXXXX 138
G G+GGESIYG F+DE + L+ + L++MAN G NGSQFF T A L+
Sbjct: 82 GTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELN-NKHT 140
Query: 139 XXXXXSGQNVVS--HIENLPVDKMSRPLQDVRVVKCNEL 175
+G V + + + +D RP ++ C L
Sbjct: 141 IFGKVTGDTVYNMLRLSEVDIDDDERPHNPHKIKSCEVL 179
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 14/152 (9%)
Query: 20 GRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFSV 79
G + EL+ D+ P TCENF LC +Y +FHR ++ F+IQ GD +
Sbjct: 29 GDLNLELHCDLTPKTCENFIRLCKKH-----------YYDGTIFHRSIRNFVIQGGDPTG 77
Query: 80 GNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDXXXXX 138
G ES +G F+DE L H +LSMAN G ++N SQFFIT + +LD
Sbjct: 78 TGTGG-ESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTI 136
Query: 139 XXXXXSGQNVVSHIENLPVD-KMSRPLQDVRV 169
G +V++ +EN+ D K RP +++R+
Sbjct: 137 FGRVVGGFDVLTAMENVESDPKTDRPKEEIRI 168
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 65/156 (41%), Gaps = 9/156 (5%)
Query: 20 GRIVFELYSDICPITCENFRALCXXXXXXXXXXXXN----LHYLNIVFHRVVKGFMIQSG 75
G I L+ + P T NF L Y VFHRV++GFMIQ G
Sbjct: 33 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 76 DFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDXX 135
D + G + F E L+ D+P+LL+MAN G TNGSQFFIT PHL+
Sbjct: 93 DPTGTGRGGPGYKFADEFHPE---LQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRR 149
Query: 136 XX--XXXXXXSGQNVVSHIENLPVDKMSRPLQDVRV 169
Q VV I D RP V +
Sbjct: 150 HTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 185
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 23/148 (15%)
Query: 20 GRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFSV 79
G + EL++D+ P C++F LC ++ + +FHR ++ FMIQ G +
Sbjct: 16 GSLNIELHADMAPRACDSFLRLCAVK-----------YFDDTIFHRCIRNFMIQGGRAEL 64
Query: 80 GNGTGGESIY-----------GGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQ 127
+ + + G FEDE + L H +LSMAN GK +N S+FFIT +
Sbjct: 65 RQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFK 124
Query: 128 PAPHLDXXXXXXXXXXSGQNVVSHIENL 155
HL+ G +V+ E L
Sbjct: 125 SCEHLNNKHTIFGRVVGGLDVLRQWEKL 152
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 63/135 (46%), Gaps = 35/135 (25%)
Query: 19 LGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFS 78
LG + EL++ CP+ C NF LC +Y+N +FHRVVK F++Q GD
Sbjct: 30 LGDLDVELWARECPLACRNFVQLCLEG-----------YYVNTIFHRVVKDFIVQGGD-P 77
Query: 79 VGNGTGGESIYGGTFEDENFE------LKHDEPFLLSMANRGKD--------------TN 118
G G GG TF+ + F+ LK L+ +AN G+ TN
Sbjct: 78 TGTGRGGADT---TFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTN 134
Query: 119 GSQFFITTQPAPHLD 133
G+QFFIT A L+
Sbjct: 135 GNQFFITLARADVLN 149
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 20 GRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFSV 79
G I +L++D P T NF + HY +FHRV+ GFMIQ G F
Sbjct: 9 GTITLKLFADKAPETAANFEQYVK-----------DGHYDGTIFHRVIDGFMIQGGGFEP 57
Query: 80 G 80
G
Sbjct: 58 G 58
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 20 GRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFSV 79
G IV + + D P T +NF C Y N +FHRV+ GFMIQ G F
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYCREGF-----------YNNTIFHRVINGFMIQGGGFEP 57
Query: 80 G 80
G
Sbjct: 58 G 58
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 43/112 (38%), Gaps = 28/112 (25%)
Query: 20 GRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFSV 79
G IV + + D P T +NF C Y N +FHRV+ GFMIQ
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYCREG-----------FYNNTIFHRVINGFMIQ------ 51
Query: 80 GNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPH 131
GG FE + EP N K+T G+ TQ APH
Sbjct: 52 ----------GGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQ-APH 92
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 11/61 (18%)
Query: 20 GRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFSV 79
G I EL P T ENF HY +FHRV+ GFMIQ G F
Sbjct: 13 GVIKLELDEAKAPKTVENFLNYVKKG-----------HYDGTIFHRVINGFMIQGGGFEP 61
Query: 80 G 80
G
Sbjct: 62 G 62
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Query: 6 PRCYFDVEISDIPLGRIVFELYSDICPITCENF---------RALCXXXXXXXXXXXXNL 56
PR Y D+ +++ +GR+ +L+ D P ENF R N
Sbjct: 15 PRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINR 74
Query: 57 HYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIY 89
Y FH V+ I SGD NG+ ++Y
Sbjct: 75 TYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVY 107
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 44/129 (34%), Gaps = 43/129 (33%)
Query: 20 GRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFSV 79
G I EL P++ +NF Y N FHRV+ GFMIQ G F+
Sbjct: 14 GNIELELDKQKAPVSVQNFVDYVNSG-----------FYNNTTFHRVIPGFMIQGGGFT- 61
Query: 80 GNGTGGESIYGGTFEDENFELKHDEPFLLSMANRG---------------KDTNGSQFFI 124
E + K P + + A+ G KD+ SQFFI
Sbjct: 62 ----------------EQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFI 105
Query: 125 TTQPAPHLD 133
LD
Sbjct: 106 NVADNAFLD 114
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 44/129 (34%), Gaps = 43/129 (33%)
Query: 20 GRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFSV 79
G I EL P++ +NF Y N FHRV+ GFMIQ G F+
Sbjct: 14 GNIELELDKQKAPVSVQNFVDYVNSG-----------FYNNTTFHRVIPGFMIQGGGFT- 61
Query: 80 GNGTGGESIYGGTFEDENFELKHDEPFLLSMANRG---------------KDTNGSQFFI 124
E + K P + + A+ G KD+ SQFFI
Sbjct: 62 ----------------EQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFI 105
Query: 125 TTQPAPHLD 133
LD
Sbjct: 106 NVADNAFLD 114
>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|B Chain B, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|C Chain C, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|D Chain D, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
Length = 380
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 2 KLIRPRCYFDVEISDIPLGRIVFELYS-DICPITCENFRA 40
K +P Y + EISDIP G I+ E+ S +C FR
Sbjct: 25 KFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRG 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,059,873
Number of Sequences: 62578
Number of extensions: 191779
Number of successful extensions: 414
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 78
length of query: 272
length of database: 14,973,337
effective HSP length: 97
effective length of query: 175
effective length of database: 8,903,271
effective search space: 1558072425
effective search space used: 1558072425
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)