Query psy17824
Match_columns 272
No_of_seqs 243 out of 1389
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 23:57:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17824.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17824hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546|consensus 100.0 9E-67 2E-71 476.1 18.4 177 4-180 7-183 (372)
2 KOG0880|consensus 100.0 6.3E-56 1.4E-60 374.8 16.8 170 4-181 38-208 (217)
3 KOG0879|consensus 100.0 1.6E-53 3.4E-58 340.8 12.9 170 3-175 8-177 (177)
4 PTZ00221 cyclophilin; Provisio 100.0 9.7E-51 2.1E-55 361.5 21.2 177 2-182 49-226 (249)
5 cd01926 cyclophilin_ABH_like c 100.0 5.7E-50 1.2E-54 338.6 19.8 164 6-173 1-164 (164)
6 PTZ00060 cyclophilin; Provisio 100.0 2.6E-49 5.6E-54 340.1 20.7 170 4-176 14-183 (183)
7 PLN03149 peptidyl-prolyl isome 100.0 2.3E-49 4.9E-54 341.1 19.5 170 3-175 16-186 (186)
8 KOG0111|consensus 100.0 1.4E-49 2.9E-54 341.5 10.5 165 3-176 134-298 (298)
9 KOG0881|consensus 100.0 5.2E-48 1.1E-52 305.8 9.2 154 4-174 8-162 (164)
10 cd01923 cyclophilin_RING cyclo 100.0 4.7E-46 1E-50 313.3 18.1 154 15-180 4-158 (159)
11 COG0652 PpiB Peptidyl-prolyl c 100.0 1.4E-45 3E-50 307.9 15.6 149 13-175 2-157 (158)
12 cd01921 cyclophilin_RRM cyclop 100.0 3.4E-45 7.3E-50 310.1 17.6 155 15-181 2-165 (166)
13 cd01927 cyclophilin_WD40 cyclo 100.0 2.8E-45 6.2E-50 305.1 16.4 145 15-171 2-147 (148)
14 cd01928 Cyclophilin_PPIL3_like 100.0 6.1E-45 1.3E-49 304.7 16.9 147 15-173 5-152 (153)
15 cd01922 cyclophilin_SpCYP2_lik 100.0 2.8E-44 6E-49 298.5 15.8 142 16-170 3-145 (146)
16 KOG0883|consensus 100.0 2.3E-44 4.9E-49 329.8 11.2 154 16-181 283-437 (518)
17 cd01925 cyclophilin_CeCYP16-li 100.0 7.2E-43 1.6E-47 297.2 18.2 155 16-182 11-167 (171)
18 KOG0882|consensus 100.0 1.1E-43 2.4E-48 330.7 11.5 157 6-174 400-557 (558)
19 PRK10903 peptidyl-prolyl cis-t 100.0 2.8E-41 6.1E-46 291.7 18.5 153 4-175 27-189 (190)
20 KOG0884|consensus 100.0 6.3E-42 1.4E-46 269.7 11.3 154 15-180 5-160 (161)
21 KOG0865|consensus 100.0 3.4E-42 7.3E-47 289.6 10.1 163 4-175 2-167 (167)
22 PRK10791 peptidyl-prolyl cis-t 100.0 4.4E-41 9.4E-46 284.3 16.6 148 14-175 3-163 (164)
23 cd01920 cyclophilin_EcCYP_like 100.0 3.4E-40 7.4E-45 276.5 16.2 142 16-171 3-154 (155)
24 KOG0885|consensus 100.0 3.6E-41 7.9E-46 307.5 10.6 163 14-188 16-180 (439)
25 PF00160 Pro_isomerase: Cyclop 100.0 3.9E-39 8.4E-44 268.9 15.7 150 9-174 1-155 (155)
26 cd00317 cyclophilin cyclophili 100.0 4.7E-39 1E-43 266.0 16.0 143 16-171 3-146 (146)
27 KOG0415|consensus 100.0 3.4E-39 7.4E-44 292.9 13.4 157 15-183 5-170 (479)
28 cd01924 cyclophilin_TLP40_like 100.0 5.3E-37 1.1E-41 262.1 15.3 129 16-155 3-165 (176)
29 KOG0882|consensus 97.8 3.2E-05 7E-10 73.9 5.0 144 21-176 113-263 (558)
30 TIGR03268 methan_mark_3 putati 96.4 0.012 2.6E-07 57.4 8.1 99 20-154 201-303 (503)
31 PRK00969 hypothetical protein; 96.4 0.012 2.6E-07 57.5 7.7 99 20-154 204-306 (508)
32 TIGR03268 methan_mark_3 putati 96.3 0.034 7.4E-07 54.3 10.6 130 3-155 351-496 (503)
33 COG4070 Predicted peptidyl-pro 96.3 0.014 2.9E-07 55.5 7.4 103 20-154 203-305 (512)
34 PRK00969 hypothetical protein; 96.0 0.058 1.3E-06 52.9 10.4 129 3-155 354-498 (508)
35 PF12903 DUF3830: Protein of u 95.0 0.11 2.4E-06 43.2 7.4 107 20-154 8-130 (147)
36 COG4070 Predicted peptidyl-pro 94.5 0.15 3.2E-06 48.7 7.6 112 21-155 377-499 (512)
37 KOG2572|consensus 88.2 0.54 1.2E-05 45.1 3.7 6 64-69 278-283 (498)
38 PF04126 Cyclophil_like: Cyclo 84.7 6.9 0.00015 31.2 8.0 46 104-154 61-113 (120)
39 PF06138 Chordopox_E11: Chordo 82.9 9.1 0.0002 31.0 7.8 48 7-69 5-61 (130)
40 KOG2270|consensus 80.6 1.7 3.6E-05 42.1 3.4 10 33-42 215-224 (520)
41 PHA03001 putative virion core 79.1 12 0.00026 30.4 7.3 48 7-69 5-60 (132)
42 KOG2573|consensus 73.2 1 2.2E-05 43.3 -0.3 24 133-157 389-412 (498)
43 COG0026 PurK Phosphoribosylami 48.2 46 0.00099 31.9 5.9 53 119-172 247-309 (375)
44 PF05913 DUF871: Bacterial pro 41.1 17 0.00037 34.6 1.9 51 103-154 298-349 (357)
45 KOG0526|consensus 41.0 12 0.00026 37.4 0.8 29 6-42 200-228 (615)
46 PF07946 DUF1682: Protein of u 34.6 75 0.0016 29.6 5.1 34 3-36 63-98 (321)
47 PF12396 DUF3659: Protein of u 31.7 58 0.0013 23.2 2.9 29 132-162 16-44 (64)
48 PF09428 DUF2011: Fungal prote 31.0 1.1E+02 0.0023 25.0 4.7 23 143-165 40-62 (131)
49 KOG0526|consensus 31.0 15 0.00032 36.8 -0.3 10 5-14 252-261 (615)
50 KOG4043|consensus 29.3 46 0.001 28.3 2.4 11 162-172 109-119 (214)
51 COG2164 Uncharacterized conser 27.4 38 0.00081 26.7 1.4 21 20-41 13-33 (126)
52 COG4391 Uncharacterized protei 24.5 66 0.0014 22.8 2.1 10 3-12 34-43 (62)
53 COG1765 Predicted redox protei 23.3 1.3E+02 0.0029 24.3 4.1 44 3-68 81-124 (137)
54 KOG3064|consensus 22.2 32 0.00068 31.4 0.2 6 138-143 174-179 (303)
55 PF07946 DUF1682: Protein of u 20.6 1.5E+02 0.0032 27.6 4.4 30 125-154 152-187 (321)
56 cd04898 ACT_ACR-like_4 ACT dom 20.5 36 0.00078 25.2 0.1 12 3-14 8-19 (77)
57 KOG2507|consensus 20.3 87 0.0019 30.7 2.7 12 119-130 79-90 (506)
No 1
>KOG0546|consensus
Probab=100.00 E-value=9e-67 Score=476.11 Aligned_cols=177 Identities=69% Similarity=1.128 Sum_probs=174.2
Q ss_pred CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCC
Q psy17824 4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGT 83 (272)
Q Consensus 4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~ 83 (272)
.||+|||||.|++.++|||||+||.|+||+||+||++||||+.|.+.++++.++|+|+.|||||++|||||||++.++|+
T Consensus 7 ~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGt 86 (372)
T KOG0546|consen 7 TNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGT 86 (372)
T ss_pred CCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCC
Confidence 48999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCC
Q psy17824 84 GGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRP 163 (272)
Q Consensus 84 gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P 163 (272)
||+||||..|+||+|.++|+++|||||||.||||||||||||+.++|||||.|||||+||.|++||+.|+++.||..++|
T Consensus 87 GGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP 166 (372)
T KOG0546|consen 87 GGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKP 166 (372)
T ss_pred CcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCeEEeEeeeeccccc
Q psy17824 164 LQDVRVVKCNELVLKSK 180 (272)
Q Consensus 164 ~~~i~I~~cg~l~~~~~ 180 (272)
+.+|+|.+||+|+....
T Consensus 167 ~~dV~I~dCGel~~~~~ 183 (372)
T KOG0546|consen 167 LADVVISDCGELVKKSK 183 (372)
T ss_pred ccceEeccccccccccc
Confidence 99999999999998876
No 2
>KOG0880|consensus
Probab=100.00 E-value=6.3e-56 Score=374.83 Aligned_cols=170 Identities=57% Similarity=0.958 Sum_probs=163.3
Q ss_pred CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhc-ccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCC
Q psy17824 4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCT-GEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNG 82 (272)
Q Consensus 4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~-g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g 82 (272)
...+|||||.+++...|||+|.||+.++|+||+||.+||+ +.+|.| |.|+.||||+|||||||||++.++|
T Consensus 38 vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~g--------Y~gS~FhRVi~nfmIQGGd~t~g~g 109 (217)
T KOG0880|consen 38 VTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYG--------YKGSKFHRVIPNFMIQGGDFTKGDG 109 (217)
T ss_pred ceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcc--------cCCceeeeeecCceeecCccccCCC
Confidence 3568999999999999999999999999999999999998 777777 9999999999999999999999999
Q ss_pred CCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCC
Q psy17824 83 TGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSR 162 (272)
Q Consensus 83 ~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~ 162 (272)
+|+.+|||..|+||||.|.|+++|.|||||.|||+||||||||+...|||||.|+|||+|++||+||.+|+.+.||++++
T Consensus 110 tGg~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dk 189 (217)
T KOG0880|consen 110 TGGKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDK 189 (217)
T ss_pred CCCeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCeEEeEeeeecccccc
Q psy17824 163 PLQDVRVVKCNELVLKSKL 181 (272)
Q Consensus 163 P~~~i~I~~cg~l~~~~~~ 181 (272)
|+++|+|.+||.|......
T Consensus 190 P~e~v~I~~~g~l~~~~~~ 208 (217)
T KOG0880|consen 190 PLEDVVIANCGELPVEYLE 208 (217)
T ss_pred ccccEEEeecCcccccchh
Confidence 9999999999999765443
No 3
>KOG0879|consensus
Probab=100.00 E-value=1.6e-53 Score=340.79 Aligned_cols=170 Identities=55% Similarity=0.898 Sum_probs=163.0
Q ss_pred CCCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCC
Q psy17824 3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNG 82 (272)
Q Consensus 3 ~~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g 82 (272)
..+|.|||||+|++.++|||.|+||.|++|.|++||.+.|||+.-. .+.+.-|++++|||||++|||||||+..++|
T Consensus 8 ~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~---~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDG 84 (177)
T KOG0879|consen 8 PNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRK---DGVPIGYKNSTFHRVIKDFMIQGGDFVNGDG 84 (177)
T ss_pred CCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhccccccc---CCccccccccchHHHhhhheeccCceecCCC
Confidence 5799999999999999999999999999999999999999997632 2367789999999999999999999999999
Q ss_pred CCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCC
Q psy17824 83 TGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSR 162 (272)
Q Consensus 83 ~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~ 162 (272)
+|-.+|||..|+||+|.++|..+|+|||||+|+++||.|||||+....|||+.|+|||+|++|+.++++|+++|+-.|++
T Consensus 85 tG~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~Nnk 164 (177)
T KOG0879|consen 85 TGVASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNK 164 (177)
T ss_pred ceEEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCeEEeEeeee
Q psy17824 163 PLQDVRVVKCNEL 175 (272)
Q Consensus 163 P~~~i~I~~cg~l 175 (272)
|.-+|.|+.||++
T Consensus 165 PKl~v~i~qCGem 177 (177)
T KOG0879|consen 165 PKLPVVIVQCGEM 177 (177)
T ss_pred CCCcEEEeecccC
Confidence 9999999999975
No 4
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=9.7e-51 Score=361.55 Aligned_cols=177 Identities=38% Similarity=0.592 Sum_probs=162.2
Q ss_pred CCCCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecC-ceeeecCccCC
Q psy17824 2 KLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKG-FMIQSGDFSVG 80 (272)
Q Consensus 2 ~~~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~-f~iqgGd~~~~ 80 (272)
...+|+|||||.|++.++|+|+|+||.+.||.||+||+.||+|..+.+..++...+|+|+.||||+++ ||||+||+..
T Consensus 49 ~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~- 127 (249)
T PTZ00221 49 EQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS- 127 (249)
T ss_pred CCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC-
Confidence 35789999999999999999999999999999999999999998877655555667999999999986 8999999742
Q ss_pred CCCCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCC
Q psy17824 81 NGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKM 160 (272)
Q Consensus 81 ~g~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~ 160 (272)
.+.++||.+|.+|++.+.|+.+|+|+|++.++++|||||||||.++|+||+.|+|||+|++||+||++|+.++++.+
T Consensus 128 ---~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~ 204 (249)
T PTZ00221 128 ---FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDV 204 (249)
T ss_pred ---CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCccCeEEeEeeeecccccch
Q psy17824 161 SRPLQDVRVVKCNELVLKSKLK 182 (272)
Q Consensus 161 ~~P~~~i~I~~cg~l~~~~~~~ 182 (272)
++|..+|+|.+||+|..+-+..
T Consensus 205 grP~~~V~I~~Cgvl~~~~p~~ 226 (249)
T PTZ00221 205 GRPLLPVTVSFCGALTGEKPPG 226 (249)
T ss_pred CCCCCCeEEEECeEecCCCCCc
Confidence 9999999999999998776543
No 5
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=5.7e-50 Score=338.65 Aligned_cols=164 Identities=59% Similarity=0.990 Sum_probs=154.7
Q ss_pred CeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCC
Q psy17824 6 PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGG 85 (272)
Q Consensus 6 p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg 85 (272)
|+|||||.++++++|+|+|+||.+.||.+|+||+.||+|..|.+. +..+|+++.||||+|+|+|||||+..+++.++
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~---~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~ 77 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGG---KPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGG 77 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcc---cccccCCCEEEEEeCCcEEEcCCccCCCCCCC
Confidence 899999999999999999999999999999999999987655432 34589999999999999999999887888899
Q ss_pred CccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCcc
Q psy17824 86 ESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQ 165 (272)
Q Consensus 86 ~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~~ 165 (272)
.++||..|++|++.+.|+.+|+|+|++.++++++|||||||+++|+||+.|+|||+|++|||||++|++++++ +++|..
T Consensus 78 ~~~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~ 156 (164)
T cd01926 78 KSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKK 156 (164)
T ss_pred CcccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcC
Confidence 9999999999988999999999999999999999999999999999999999999999999999999999998 899999
Q ss_pred CeEEeEee
Q psy17824 166 DVRVVKCN 173 (272)
Q Consensus 166 ~i~I~~cg 173 (272)
+|+|.+||
T Consensus 157 ~i~I~~cG 164 (164)
T cd01926 157 KVVIADCG 164 (164)
T ss_pred CeEEEECC
Confidence 99999997
No 6
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=2.6e-49 Score=340.12 Aligned_cols=170 Identities=58% Similarity=0.966 Sum_probs=158.3
Q ss_pred CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCC
Q psy17824 4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGT 83 (272)
Q Consensus 4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~ 83 (272)
.||+|||||++++++.|+|+|+||.+.||.+|+||+.||+|..... .++.++|+|+.||||+|+|+|||||+..+++.
T Consensus 14 ~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~--~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~ 91 (183)
T PTZ00060 14 KRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGS--SGKNLHYKGSIFHRIIPQFMCQGGDITNHNGT 91 (183)
T ss_pred CCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccc--cCcccccCCeEEEEEcCCCeEEeCCccCCCCC
Confidence 5899999999999999999999999999999999999998765321 23678999999999999999999998878889
Q ss_pred CCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCC
Q psy17824 84 GGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRP 163 (272)
Q Consensus 84 gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P 163 (272)
++.++||..+++|.+.+.|..+|+|+|++.++++++||||||+.++|+||+.|+|||+|++|||||++|+..++ .+++|
T Consensus 92 ~g~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~-~~~~P 170 (183)
T PTZ00060 92 GGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGT-QSGYP 170 (183)
T ss_pred CCCcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCC-CCCCC
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999988 46899
Q ss_pred ccCeEEeEeeeec
Q psy17824 164 LQDVRVVKCNELV 176 (272)
Q Consensus 164 ~~~i~I~~cg~l~ 176 (272)
..+|+|.+||+|.
T Consensus 171 ~~~v~I~~cg~~~ 183 (183)
T PTZ00060 171 KKPVVVTDCGELQ 183 (183)
T ss_pred cCCeEEEEeEEcC
Confidence 9999999999983
No 7
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=2.3e-49 Score=341.14 Aligned_cols=170 Identities=52% Similarity=0.817 Sum_probs=156.9
Q ss_pred CCCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCC
Q psy17824 3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNG 82 (272)
Q Consensus 3 ~~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g 82 (272)
..+|+|||||.++++++|+|+|+||.+.||.||+||+.||+|.... .+....|++|.||||+++|+|||||+..+++
T Consensus 16 ~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~---~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g 92 (186)
T PLN03149 16 PKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRK---AGLPQGYKGCQFHRVIKDFMIQGGDFLKGDG 92 (186)
T ss_pred CCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccc---cCcccccCCcEEEEEcCCcEEEcCCcccCCC
Confidence 4579999999999999999999999999999999999999875321 0122349999999999999999999888889
Q ss_pred CCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEe-cCHHHHHHHhcCCCCCCC
Q psy17824 83 TGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVV-SGQNVVSHIENLPVDKMS 161 (272)
Q Consensus 83 ~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi-~G~dVl~~I~~~~~d~~~ 161 (272)
.++.++|+..|++|++.+.|..+|+|+|++.++++++||||||+.++|+||++|+|||+|+ +||+||++|+.++++.++
T Consensus 93 ~g~~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~ 172 (186)
T PLN03149 93 TGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNN 172 (186)
T ss_pred CCcccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999 799999999999999999
Q ss_pred CCccCeEEeEeeee
Q psy17824 162 RPLQDVRVVKCNEL 175 (272)
Q Consensus 162 ~P~~~i~I~~cg~l 175 (272)
+|..+|+|.+||++
T Consensus 173 ~P~~~i~I~~cG~~ 186 (186)
T PLN03149 173 RPKLACVISECGEM 186 (186)
T ss_pred CCcCCeEEEeCEeC
Confidence 99999999999985
No 8
>KOG0111|consensus
Probab=100.00 E-value=1.4e-49 Score=341.53 Aligned_cols=165 Identities=55% Similarity=0.934 Sum_probs=161.0
Q ss_pred CCCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCC
Q psy17824 3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNG 82 (272)
Q Consensus 3 ~~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g 82 (272)
..+|+||+||.|++...|||++.|..|+.|+|++||.+||+|+.|+| |.||+||||||.||+|||||+.++|
T Consensus 134 ~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg--------ykgssfhriip~fmcqggdftn~ng 205 (298)
T KOG0111|consen 134 MENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG--------YKGSSFHRIIPKFMCQGGDFTNGNG 205 (298)
T ss_pred hhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC--------ccccchhhhhhhhhccCCccccCCC
Confidence 46899999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred CCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCC
Q psy17824 83 TGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSR 162 (272)
Q Consensus 83 ~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~ 162 (272)
+||.||||..|.||+|.|+|..+|+|||||+|+|+|||||||++....|||+.|+|||.|++||+||++|+++.+ ..+.
T Consensus 206 tggksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgs-ksgk 284 (298)
T KOG0111|consen 206 TGGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGS-KSGK 284 (298)
T ss_pred CCCcccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccC-CCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997 6799
Q ss_pred CccCeEEeEeeeec
Q psy17824 163 PLQDVRVVKCNELV 176 (272)
Q Consensus 163 P~~~i~I~~cg~l~ 176 (272)
|.+.|.|..||+|.
T Consensus 285 p~qkv~i~~cge~~ 298 (298)
T KOG0111|consen 285 PQQKVKIVECGEIE 298 (298)
T ss_pred cceEEEEEeccccC
Confidence 99999999999873
No 9
>KOG0881|consensus
Probab=100.00 E-value=5.2e-48 Score=305.78 Aligned_cols=154 Identities=45% Similarity=0.806 Sum_probs=147.0
Q ss_pred CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCC
Q psy17824 4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGT 83 (272)
Q Consensus 4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~ 83 (272)
+.|.|+++ |+.|.|++|||-..||.||.||..|+ +.+||+|+.||||+++|||||||+ +++|+
T Consensus 8 q~~~V~Le-----TsmG~i~~ElY~kHaP~TC~NF~eLa-----------rrgYYn~v~FHRii~DFmiQGGDP-TGTGR 70 (164)
T KOG0881|consen 8 QPPNVTLE-----TSMGKITLELYWKHAPRTCQNFAELA-----------RRGYYNGVIFHRIIKDFMIQGGDP-TGTGR 70 (164)
T ss_pred CCCeEEEe-----ecccceehhhhhhcCcHHHHHHHHHH-----------hcccccceeeeehhhhheeecCCC-CCCCC
Confidence 56788887 99999999999999999999999999 789999999999999999999996 79999
Q ss_pred CCCccCCCCCCCCCc-CcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCC
Q psy17824 84 GGESIYGGTFEDENF-ELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSR 162 (272)
Q Consensus 84 gg~s~~g~~~~de~~-~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~ 162 (272)
||.||||..|+||-. .|.|..+|+|+|||.|||+|||||||||++.+||||.|++||||+.||+|+.+|..+.||.++|
T Consensus 71 GGaSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DR 150 (164)
T KOG0881|consen 71 GGASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDR 150 (164)
T ss_pred CccccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCC
Confidence 999999999999965 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCeEEeEeee
Q psy17824 163 PLQDVRVVKCNE 174 (272)
Q Consensus 163 P~~~i~I~~cg~ 174 (272)
|..+|+|..+-.
T Consensus 151 Pi~~~kIika~~ 162 (164)
T KOG0881|consen 151 PIDEVKIIKAYP 162 (164)
T ss_pred CccceeeEeeec
Confidence 999999997643
No 10
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=4.7e-46 Score=313.26 Aligned_cols=154 Identities=44% Similarity=0.717 Sum_probs=145.0
Q ss_pred CCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCCC
Q psy17824 15 SDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFE 94 (272)
Q Consensus 15 ~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~ 94 (272)
..|+.|+|+|+||.+.||+||+||+.|| +.++|+|+.||||+|+|+|||||+ .+++.++.++||..|+
T Consensus 4 ~~T~~G~i~ieL~~~~aP~t~~nF~~L~-----------~~g~Y~~~~f~rv~~~~~iq~Gd~-~~~g~~~~~~~g~~~~ 71 (159)
T cd01923 4 LHTNKGDLNLELHCDKAPKACENFIKLC-----------KKGYYDGTIFHRSIRNFMIQGGDP-TGTGRGGESIWGKPFK 71 (159)
T ss_pred EEEccccEEEEEeCCCChHHHHHHHHHH-----------hcCccCCcEEEEEeCCcEEEeccc-CCCCCCCccccCCccC
Confidence 3489999999999999999999999999 568999999999999999999997 4778889999999999
Q ss_pred CCCc-CcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCccCeEEeEee
Q psy17824 95 DENF-ELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCN 173 (272)
Q Consensus 95 de~~-~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~~~i~I~~cg 173 (272)
+|.. .+.|+.+|+|+|++.++++++||||||++++|+||+.|+|||+|++||+||++|+.++++.+++|..+|+|.+|+
T Consensus 72 ~E~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~ 151 (159)
T cd01923 72 DEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTS 151 (159)
T ss_pred cccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeE
Confidence 8854 688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccc
Q psy17824 174 ELVLKSK 180 (272)
Q Consensus 174 ~l~~~~~ 180 (272)
++.++++
T Consensus 152 i~~dpf~ 158 (159)
T cd01923 152 VFVDPFE 158 (159)
T ss_pred EEeCCCC
Confidence 9998875
No 11
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-45 Score=307.86 Aligned_cols=149 Identities=45% Similarity=0.688 Sum_probs=135.0
Q ss_pred EECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCC
Q psy17824 13 EISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGT 92 (272)
Q Consensus 13 ~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~ 92 (272)
++..|+.|+|+|+||++.||+||+||+.|| +.+||+|+.||||+++|||||||+..+++.+|.+ .+
T Consensus 2 v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~-----------~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~~---~~ 67 (158)
T COG0652 2 VILETNKGDITIELYPDKAPKTVANFLQLV-----------KEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGPG---PP 67 (158)
T ss_pred ceeeccCCCEEEEECCCcCcHHHHHHHHHH-----------HcCCCCCceEEEeecCceeecCCCCCCCCCCCCC---CC
Confidence 356699999999999999999999999999 6889999999999999999999998777888874 78
Q ss_pred CCCCCcCcCCCc--ceeEeeeccC-CCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCC----CCCcc
Q psy17824 93 FEDENFELKHDE--PFLLSMANRG-KDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKM----SRPLQ 165 (272)
Q Consensus 93 ~~de~~~~~h~~--~G~lsm~~~g-~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~----~~P~~ 165 (272)
|++|++...|.+ +|+|||||.+ |++|+||||||+.++||||+.|+|||+|++|||||++|++..+... ..|..
T Consensus 68 f~~E~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~ 147 (158)
T COG0652 68 FKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPAD 147 (158)
T ss_pred CcccccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCC
Confidence 999999988888 9999999999 9999999999999999999999999999999999999999888753 35667
Q ss_pred CeEEeEeeee
Q psy17824 166 DVRVVKCNEL 175 (272)
Q Consensus 166 ~i~I~~cg~l 175 (272)
+++|....++
T Consensus 148 ~~~i~~~~~~ 157 (158)
T COG0652 148 PVKILSVKIV 157 (158)
T ss_pred CeEEeeeeee
Confidence 7777765554
No 12
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=3.4e-45 Score=310.10 Aligned_cols=155 Identities=43% Similarity=0.656 Sum_probs=141.2
Q ss_pred CCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCC----
Q psy17824 15 SDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYG---- 90 (272)
Q Consensus 15 ~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g---- 90 (272)
..|+.|+|+|+||.+.||+||+||+.|| +.++|+|+.||||+++|||||||+. +++.++.++|+
T Consensus 2 l~Ts~G~i~ieL~~~~aP~t~~nF~~L~-----------~~~~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~ 69 (166)
T cd01921 2 LETTLGDLVIDLFTDECPLACLNFLKLC-----------KLKYYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYG 69 (166)
T ss_pred cEeccCCEEEEEcCCCCCHHHHHHHHHH-----------hcCCcCCCEEEEEeCCceEEECCcC-CCCCCCccccccccc
Confidence 3589999999999999999999999999 5679999999999999999999974 66777777765
Q ss_pred ---CCCCCCC-cCcCCCcceeEeeeccCCCCCccEEEEEcCC-CCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCcc
Q psy17824 91 ---GTFEDEN-FELKHDEPFLLSMANRGKDTNGSQFFITTQP-APHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQ 165 (272)
Q Consensus 91 ---~~~~de~-~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~-~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~~ 165 (272)
..|.+|. ..+.|+.+|+|+||+.++++++|||||||.+ +|+||+.|+|||+|++||+||++|+.++++.+++|..
T Consensus 70 ~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~ 149 (166)
T cd01921 70 RQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLK 149 (166)
T ss_pred ccCcccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCC
Confidence 3466665 4788999999999999999999999999985 8999999999999999999999999999999999999
Q ss_pred CeEEeEeeeecccccc
Q psy17824 166 DVRVVKCNELVLKSKL 181 (272)
Q Consensus 166 ~i~I~~cg~l~~~~~~ 181 (272)
+|+|.+|++|.++|+.
T Consensus 150 ~i~I~~~~i~~~pf~~ 165 (166)
T cd01921 150 DIRIKHTHILDDPFPD 165 (166)
T ss_pred CeEEEEEEEECCCCCC
Confidence 9999999999999874
No 13
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=2.8e-45 Score=305.11 Aligned_cols=145 Identities=53% Similarity=0.867 Sum_probs=137.0
Q ss_pred CCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCCC
Q psy17824 15 SDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFE 94 (272)
Q Consensus 15 ~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~ 94 (272)
..|++|+|+|+||.+.||+||+||+.|| +.+||+|+.||||++||+|||||+ .+++.++.++|+..|+
T Consensus 2 i~T~~G~i~ieL~~~~aP~t~~nF~~L~-----------~~g~Y~~~~f~Rvi~~f~iq~Gd~-~~~g~g~~~~~~~~~~ 69 (148)
T cd01927 2 IHTTKGDIHIRLFPEEAPKTVENFTTHA-----------RNGYYNNTIFHRVIKGFMIQTGDP-TGDGTGGESIWGKEFE 69 (148)
T ss_pred eEeccccEEEEEeCCCCcHHHHHHHHHh-----------hcCCcCCcEEEEEcCCcEEEeccc-CCCCCCCCcccCCccc
Confidence 3589999999999999999999999999 567999999999999999999997 5778889999999999
Q ss_pred CCCc-CcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCccCeEEeE
Q psy17824 95 DENF-ELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVK 171 (272)
Q Consensus 95 de~~-~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~~~i~I~~ 171 (272)
+|.. .+.|..+|+|+|++.++++++|||||||+++|+||+.|+|||+|++||+||++|+.++++.+++|..+|+|.+
T Consensus 70 ~e~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 70 DEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred cccccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 9976 7899999999999999999999999999999999999999999999999999999999998999999999985
No 14
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=6.1e-45 Score=304.70 Aligned_cols=147 Identities=52% Similarity=0.871 Sum_probs=138.3
Q ss_pred CCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCCC
Q psy17824 15 SDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFE 94 (272)
Q Consensus 15 ~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~ 94 (272)
..|+.|+|+|+||++.||+||+||+.|| +.+||+|+.||||+++|+|||||+ .+++.++.++|+.+|+
T Consensus 5 l~T~~G~i~ieL~~~~aP~t~~nF~~L~-----------~~g~Y~~~~f~rv~~~f~iq~Gd~-~~~g~g~~~~~~~~~~ 72 (153)
T cd01928 5 LHTNLGDIKIELFCDDCPKACENFLALC-----------ASGYYNGCIFHRNIKGFMVQTGDP-TGTGKGGESIWGKKFE 72 (153)
T ss_pred EEEccccEEEEEcCCCCcHHHHHHHHHH-----------hcCccCCcEEEEeCCCCEEEcccc-CCCCCCCCccCCCccc
Confidence 3489999999999999999999999999 567999999999999999999997 4678888899999999
Q ss_pred CCCc-CcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCccCeEEeEee
Q psy17824 95 DENF-ELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCN 173 (272)
Q Consensus 95 de~~-~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~~~i~I~~cg 173 (272)
+|.. .+.|+.+|+|+|++.++++++|||||+++++|+||+.|+|||+|++||+||++|+.++++.+++|..+|+|.+|.
T Consensus 73 ~e~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~ 152 (153)
T cd01928 73 DEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVT 152 (153)
T ss_pred cccccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence 9876 678999999999999999999999999999999999999999999999999999999999999999999999984
No 15
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=2.8e-44 Score=298.54 Aligned_cols=142 Identities=48% Similarity=0.838 Sum_probs=133.9
Q ss_pred CeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCCCC
Q psy17824 16 DIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFED 95 (272)
Q Consensus 16 ~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~d 95 (272)
.|+.|+|+|+||.+.||.+|+||+.|| +.+||+++.||||+++|+|||||+ .+++.++.++|+.+|++
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~-----------~~g~Y~~~~f~Rvi~~f~iq~Gd~-~~~g~~~~~~~~~~~~~ 70 (146)
T cd01922 3 ETTMGEITLELYWNHAPKTCKNFYELA-----------KRGYYNGTIFHRLIKDFMIQGGDP-TGTGRGGASIYGKKFED 70 (146)
T ss_pred EeccccEEEEEcCCCCcHHHHHHHHHH-----------hcCCcCCcEEEEEcCCcEEEeccc-CCCCCCcccccCCCccc
Confidence 589999999999999999999999999 568999999999999999999997 46778888999999999
Q ss_pred CC-cCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCccCeEEe
Q psy17824 96 EN-FELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVV 170 (272)
Q Consensus 96 e~-~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~~~i~I~ 170 (272)
|. ..+.|..+|+|+|++.++++++||||||++++|+||+.|+|||+|++|||||++|+.++++ +++|..+|+|.
T Consensus 71 e~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~ 145 (146)
T cd01922 71 EIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKIL 145 (146)
T ss_pred ccccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEe
Confidence 84 5789999999999999999999999999999999999999999999999999999999998 88999999996
No 16
>KOG0883|consensus
Probab=100.00 E-value=2.3e-44 Score=329.82 Aligned_cols=154 Identities=44% Similarity=0.723 Sum_probs=148.9
Q ss_pred CeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCCCC
Q psy17824 16 DIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFED 95 (272)
Q Consensus 16 ~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~d 95 (272)
.|+.|.|.|||++|.+|.+|+||+.|| +.|||+|+.|||.|.+|||||||| +|+|.||.||||.+|.|
T Consensus 283 ~Tn~G~lNlELhcd~~P~aceNFI~lc-----------~~gYYnnt~FHRsIrnFmiQGGDP-TGTG~GGeSiWgKpFkD 350 (518)
T KOG0883|consen 283 VTNHGPLNLELHCDYAPRACENFITLC-----------KNGYYNNTIFHRSIRNFMIQGGDP-TGTGRGGESIWGKPFKD 350 (518)
T ss_pred eccCCceeeEeecCcchHHHHHHHHHH-----------hcccccchHHHHHHHHHeeeCCCC-CCCCCCCccccCCcccc
Confidence 488999999999999999999999999 799999999999999999999996 79999999999999999
Q ss_pred CCc-CcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCccCeEEeEeee
Q psy17824 96 ENF-ELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNE 174 (272)
Q Consensus 96 e~~-~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~~~i~I~~cg~ 174 (272)
|.. .|.|+.+|+|||||+|+|+|||||||+..++.|||+.|+|||+|+.|++||.+|+.+++|+.++|..+|+|...-|
T Consensus 351 Ef~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~V 430 (518)
T KOG0883|consen 351 EFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIV 430 (518)
T ss_pred ccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEE
Confidence 965 7999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccc
Q psy17824 175 LVLKSKL 181 (272)
Q Consensus 175 l~~~~~~ 181 (272)
+++++..
T Consensus 431 FVdPfeE 437 (518)
T KOG0883|consen 431 FVDPFEE 437 (518)
T ss_pred eeCcHHH
Confidence 9999863
No 17
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=7.2e-43 Score=297.17 Aligned_cols=155 Identities=40% Similarity=0.625 Sum_probs=144.4
Q ss_pred CeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCCCC
Q psy17824 16 DIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFED 95 (272)
Q Consensus 16 ~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~d 95 (272)
.|++|+|+|+||.+.||+||+||+.|| +.+||+|+.||||+++|||||||+ .+++.++.++||..|.+
T Consensus 11 ~Ts~G~i~ieL~~~~~P~t~~nF~~L~-----------~~~~Y~~~~f~Rvi~~f~iQgGd~-~~~g~g~~s~~g~~~~~ 78 (171)
T cd01925 11 KTTAGDIDIELWSKEAPKACRNFIQLC-----------LEGYYDNTIFHRVVPGFIIQGGDP-TGTGTGGESIYGEPFKD 78 (171)
T ss_pred EEccccEEEEEeCCCChHHHHHHHHHH-----------hcCCCCCCEEEEEcCCcEEEcccc-CCCCccCcccCCCccCc
Confidence 489999999999999999999999999 567999999999999999999996 47788899999999998
Q ss_pred CCc-CcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEec-CHHHHHHHhcCCCCCCCCCccCeEEeEee
Q psy17824 96 ENF-ELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVS-GQNVVSHIENLPVDKMSRPLQDVRVVKCN 173 (272)
Q Consensus 96 e~~-~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~-G~dVl~~I~~~~~d~~~~P~~~i~I~~cg 173 (272)
|.. .+.|+.+|+|+|++.++++++||||||++++|+||+.|+|||+|+. +|++|++|+.++++.+++|..+|+|.+|+
T Consensus 79 E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~ 158 (171)
T cd01925 79 EFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVE 158 (171)
T ss_pred ccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEE
Confidence 865 5789999999999999999999999999999999999999999994 68899999999999999999999999999
Q ss_pred eecccccch
Q psy17824 174 ELVLKSKLK 182 (272)
Q Consensus 174 ~l~~~~~~~ 182 (272)
++.++++.-
T Consensus 159 i~~~pf~~~ 167 (171)
T cd01925 159 VLENPFDDI 167 (171)
T ss_pred EEcCCchhh
Confidence 999888754
No 18
>KOG0882|consensus
Probab=100.00 E-value=1.1e-43 Score=330.66 Aligned_cols=157 Identities=50% Similarity=0.845 Sum_probs=148.2
Q ss_pred CeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCC
Q psy17824 6 PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGG 85 (272)
Q Consensus 6 p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg 85 (272)
+.+.-+-+|..|++|+|.|.||++.||+||+||...| ++|||+|..|||||+|||||+||| .|+|+||
T Consensus 400 ~~~l~~~aiihtt~gdi~~kl~p~ecpktvenf~th~-----------rngyy~~~~fhriik~fmiqtgdp-~g~gtgg 467 (558)
T KOG0882|consen 400 NKLLGKAAIIHTTQGDIHIKLYPEECPKTVENFTTHS-----------RNGYYDNHTFHRIIKGFMIQTGDP-LGDGTGG 467 (558)
T ss_pred ceecccceEEEecccceEEEecccccchhhhhhhccc-----------cCccccCcchHHhhhhheeecCCC-CCCCCCC
Confidence 3444566788899999999999999999999998888 789999999999999999999997 7999999
Q ss_pred CccCCCCCCCCCc-CcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCc
Q psy17824 86 ESIYGGTFEDENF-ELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPL 164 (272)
Q Consensus 86 ~s~~g~~~~de~~-~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~ 164 (272)
.||||..|+||.. .|.|+++.+|||||.|+|+||||||||+-++|||||.|+|||||+.||+||++|+++.|+.++||+
T Consensus 468 esiwg~dfedefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~ 547 (558)
T KOG0882|consen 468 ESIWGKDFEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPY 547 (558)
T ss_pred cccccccchhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCC
Confidence 9999999999976 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEeEeee
Q psy17824 165 QDVRVVKCNE 174 (272)
Q Consensus 165 ~~i~I~~cg~ 174 (272)
.+|.|.+..+
T Consensus 548 e~v~iinisv 557 (558)
T KOG0882|consen 548 EDVKIINISV 557 (558)
T ss_pred CceeEEEEec
Confidence 9999998754
No 19
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=2.8e-41 Score=291.71 Aligned_cols=153 Identities=30% Similarity=0.449 Sum_probs=132.5
Q ss_pred CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCC
Q psy17824 4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGT 83 (272)
Q Consensus 4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~ 83 (272)
.+++|.|+ |+.|+|+|+||.+.||+||+||+.|| +.+||+|+.||||+++||||||++....+
T Consensus 27 ~~~~v~l~-----T~~G~i~ieL~~~~aP~t~~NF~~L~-----------~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~- 89 (190)
T PRK10903 27 GDPHVLLT-----TSAGNIELELNSQKAPVSVKNFVDYV-----------NSGFYNNTTFHRVIPGFMIQGGGFTEQMQ- 89 (190)
T ss_pred CCcEEEEE-----eccccEEEEEeCCCCcHHHHHHHHHH-----------hcCCcCCcEEEEEeCCceEEeCCcCCCCC-
Confidence 34555544 89999999999999999999999999 67899999999999999999999753321
Q ss_pred CCCccCCCCCCCCCcCcCCCcceeEeeeccC-CCCCccEEEEEcCCCCCCCC-----CCcEEEEEecCHHHHHHHhcCCC
Q psy17824 84 GGESIYGGTFEDENFELKHDEPFLLSMANRG-KDTNGSQFFITTQPAPHLDG-----VHVVFGHVVSGQNVVSHIENLPV 157 (272)
Q Consensus 84 gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g-~~s~~SqFfItl~~~p~ld~-----~~~VFG~Vi~G~dVl~~I~~~~~ 157 (272)
...++.+|.+|.....|+.+|+|+|++.+ +++++|||||++.+.++||+ .|+|||+|++|||||++|+.+++
T Consensus 90 --~~~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~ 167 (190)
T PRK10903 90 --QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPT 167 (190)
T ss_pred --CCCCCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCC
Confidence 12345678888666667889999999865 89999999999999999984 89999999999999999999999
Q ss_pred CC----CCCCccCeEEeEeeee
Q psy17824 158 DK----MSRPLQDVRVVKCNEL 175 (272)
Q Consensus 158 d~----~~~P~~~i~I~~cg~l 175 (272)
+. .++|..+|+|.+|+++
T Consensus 168 ~~~~~~~~~P~~~v~I~~~~v~ 189 (190)
T PRK10903 168 HDVGPYQNVPSKPVVILSAKVL 189 (190)
T ss_pred CCCCCCCCcccCCeEEEEEEEe
Confidence 76 4799999999999886
No 20
>KOG0884|consensus
Probab=100.00 E-value=6.3e-42 Score=269.74 Aligned_cols=154 Identities=44% Similarity=0.703 Sum_probs=145.3
Q ss_pred CCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCCC
Q psy17824 15 SDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFE 94 (272)
Q Consensus 15 ~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~ 94 (272)
..|..|+|.||||.+.+|++|+||+.|| -..||++|.|||-+++||+|+||+ ...|+||.||||..|+
T Consensus 5 lht~~gdikiev~~e~tpktce~~l~~~-----------~~~~~n~~~~~~~~~~f~v~~~~~-~~tgrgg~siwg~~fe 72 (161)
T KOG0884|consen 5 LHTDVGDIKIEVFCERTPKTCENFLALC-----------ASDYYNGCIFHRNIKGFMVQTGDP-THTGRGGNSIWGKKFE 72 (161)
T ss_pred EeeccCcEEEEEEecCChhHHHHHHHHh-----------hhhhccceeecCCCCCcEEEeCCC-CCCCCCCccccCCcch
Confidence 4588999999999999999999999999 467999999999999999999996 6889999999999999
Q ss_pred CCCc-CcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCC-CCCccCeEEeEe
Q psy17824 95 DENF-ELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKM-SRPLQDVRVVKC 172 (272)
Q Consensus 95 de~~-~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~-~~P~~~i~I~~c 172 (272)
||.. .|+|+.+|+|+|||.||++|+||||||.+..||||-.|+|||+||+|+++|+.|+.+++++. .||+.++.|.+.
T Consensus 73 de~~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~i 152 (161)
T KOG0884|consen 73 DEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDI 152 (161)
T ss_pred HHHHHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeee
Confidence 9976 69999999999999999999999999999999999999999999999999999999999876 699999999999
Q ss_pred eeeccccc
Q psy17824 173 NELVLKSK 180 (272)
Q Consensus 173 g~l~~~~~ 180 (272)
.+-.+++.
T Consensus 153 tihanp~a 160 (161)
T KOG0884|consen 153 TIHANPFA 160 (161)
T ss_pred EEecCcCC
Confidence 88877653
No 21
>KOG0865|consensus
Probab=100.00 E-value=3.4e-42 Score=289.63 Aligned_cols=163 Identities=53% Similarity=0.956 Sum_probs=156.2
Q ss_pred CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEE---eecCceeeecCccCC
Q psy17824 4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHR---VVKGFMIQSGDFSVG 80 (272)
Q Consensus 4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~R---vi~~f~iqgGd~~~~ 80 (272)
.+|+|||||.+.+.++|+++++||.|..|.|++||..||||++|+| |.++.||| ++++||+||||++..
T Consensus 2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~--------yk~s~fhr~~~~~~~fm~qggDft~h 73 (167)
T KOG0865|consen 2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG--------YKGSCFHRLIPIIPGFMCQGGDFTCH 73 (167)
T ss_pred CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc--------cccchhhhccccccceeeccCccccc
Confidence 5899999999999999999999999999999999999999988877 99999999 344799999999999
Q ss_pred CCCCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCC
Q psy17824 81 NGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKM 160 (272)
Q Consensus 81 ~g~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~ 160 (272)
++++|.+||+..|+||+|.++|..+|+|+|||.||++|+|||||++....|||+.|+|||+|.+||+|+++|+.... .+
T Consensus 74 ngtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs-~~ 152 (167)
T KOG0865|consen 74 NGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGS-RN 152 (167)
T ss_pred CCccceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCC-cC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876 78
Q ss_pred CCCccCeEEeEeeee
Q psy17824 161 SRPLQDVRVVKCNEL 175 (272)
Q Consensus 161 ~~P~~~i~I~~cg~l 175 (272)
++|...|.|.+||+|
T Consensus 153 gk~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 153 GKTSKKITIADCGQL 167 (167)
T ss_pred CcccccEEEecCCcC
Confidence 999999999999986
No 22
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=4.4e-41 Score=284.35 Aligned_cols=148 Identities=30% Similarity=0.453 Sum_probs=126.6
Q ss_pred ECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCC
Q psy17824 14 ISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTF 93 (272)
Q Consensus 14 v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~ 93 (272)
+..|+.|+|+|+||.+.||+||+||+.|| +.+||+|+.||||+++||||||++..+.+. ..++.+|
T Consensus 3 ~~~T~~G~i~ieL~~~~aP~t~~nF~~L~-----------~~g~Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~ 68 (164)
T PRK10791 3 TFHTNHGDIVIKTFDDKAPETVKNFLDYC-----------REGFYNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPI 68 (164)
T ss_pred EEEEccccEEEEEeCCCCcHHHHHHHHHH-----------hcCCcCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCc
Confidence 34599999999999999999999999999 578999999999999999999997544322 2235677
Q ss_pred CCCCcCcCCCcceeEeeeccC-CCCCccEEEEEcCCCCCCC-------C-CCcEEEEEecCHHHHHHHhcCCCCC----C
Q psy17824 94 EDENFELKHDEPFLLSMANRG-KDTNGSQFFITTQPAPHLD-------G-VHVVFGHVVSGQNVVSHIENLPVDK----M 160 (272)
Q Consensus 94 ~de~~~~~h~~~G~lsm~~~g-~~s~~SqFfItl~~~p~ld-------~-~~~VFG~Vi~G~dVl~~I~~~~~d~----~ 160 (272)
.+|.....|+.+|+|+||+.+ +++++|||||++.+.++|| + .|+|||+|++||+||++|+.++++. +
T Consensus 69 ~~e~~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~ 148 (164)
T PRK10791 69 KNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQ 148 (164)
T ss_pred CCcccccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccC
Confidence 777544444579999999875 8999999999999988876 3 6999999999999999999999976 3
Q ss_pred CCCccCeEEeEeeee
Q psy17824 161 SRPLQDVRVVKCNEL 175 (272)
Q Consensus 161 ~~P~~~i~I~~cg~l 175 (272)
++|..+|+|..|.+.
T Consensus 149 ~~P~~~v~I~~~~i~ 163 (164)
T PRK10791 149 DVPKEDVIIESVTVS 163 (164)
T ss_pred CCcCCCeEEEEEEEe
Confidence 699999999999764
No 23
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=3.4e-40 Score=276.54 Aligned_cols=142 Identities=35% Similarity=0.495 Sum_probs=124.4
Q ss_pred CeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCCCC
Q psy17824 16 DIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFED 95 (272)
Q Consensus 16 ~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~d 95 (272)
.|+.|+|+|+||.+.||+||+||+.|| +.+||+|+.||||+|+|||||||+....+. ..++.++.+
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~-----------~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~ 68 (155)
T cd01920 3 QTSLGDIVVELYDDKAPITVENFLAYV-----------RKGFYDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKN 68 (155)
T ss_pred EecceeEEEEEeCCCCcHHHHHHHHHH-----------hcCCCCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccC
Confidence 488999999999999999999999999 578999999999999999999997543322 234567777
Q ss_pred CCcCcCCCcceeEeeeccC-CCCCccEEEEEcCCCCCCCC-----CCcEEEEEecCHHHHHHHhcCCCCCC----CCCcc
Q psy17824 96 ENFELKHDEPFLLSMANRG-KDTNGSQFFITTQPAPHLDG-----VHVVFGHVVSGQNVVSHIENLPVDKM----SRPLQ 165 (272)
Q Consensus 96 e~~~~~h~~~G~lsm~~~g-~~s~~SqFfItl~~~p~ld~-----~~~VFG~Vi~G~dVl~~I~~~~~d~~----~~P~~ 165 (272)
|.....|+.+|+|+||+.+ +++++|||||+|.++|+||+ .|+|||+|++||+||++|+.++++.+ +.|..
T Consensus 69 e~~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~ 148 (155)
T cd01920 69 EAGNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQ 148 (155)
T ss_pred cccccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCC
Confidence 7666667889999999865 89999999999999999995 79999999999999999999999764 58999
Q ss_pred CeEEeE
Q psy17824 166 DVRVVK 171 (272)
Q Consensus 166 ~i~I~~ 171 (272)
+|.|..
T Consensus 149 ~v~i~~ 154 (155)
T cd01920 149 DVIIES 154 (155)
T ss_pred CeEEEE
Confidence 998875
No 24
>KOG0885|consensus
Probab=100.00 E-value=3.6e-41 Score=307.48 Aligned_cols=163 Identities=37% Similarity=0.625 Sum_probs=153.7
Q ss_pred ECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCC
Q psy17824 14 ISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTF 93 (272)
Q Consensus 14 v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~ 93 (272)
|..|+.|+|.||||+..||.+|.||++|| -.|||+|+.|||++|||++||||| +++|+||.+|||.+|
T Consensus 16 il~TT~G~I~iELW~kE~P~acrnFiqKO-----------Gegyy~nt~fhrlvp~f~~Qggdp-~~~gtGgesiyg~~f 83 (439)
T KOG0885|consen 16 ILKTTKGDIDIELWAKECPKACRNFIQLC-----------LEGYYDNTEFHRLVPGFLVQGGDP-TGTGTGGESIYGRPF 83 (439)
T ss_pred EEEeccCceeeeehhhhhhHHHHHHHHHH-----------HhccccCceeeeeccchhcccCCC-CCCCCCccccccccc
Confidence 45699999999999999999999999999 579999999999999999999997 799999999999999
Q ss_pred CCCCc-CcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEec-CHHHHHHHhcCCCCCCCCCccCeEEeE
Q psy17824 94 EDENF-ELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVS-GQNVVSHIENLPVDKMSRPLQDVRVVK 171 (272)
Q Consensus 94 ~de~~-~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~-G~dVl~~I~~~~~d~~~~P~~~i~I~~ 171 (272)
.+|.. .|.++++|+|+|||.+.+.|||||||||+++|+|++.|+|||+|+. -+..+.+|..+.++.+.||..+-.|.+
T Consensus 84 adE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s 163 (439)
T KOG0885|consen 84 ADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKS 163 (439)
T ss_pred hhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCccceee
Confidence 99965 7999999999999999999999999999999999999999999995 788899999999999999999999999
Q ss_pred eeeecccccchhhhhcc
Q psy17824 172 CNELVLKSKLKAKEKRK 188 (272)
Q Consensus 172 cg~l~~~~~~~~~~~~~ 188 (272)
|-||.++|.+..++..+
T Consensus 164 ~EV~~npFdDI~pr~~r 180 (439)
T KOG0885|consen 164 VEVLINPFDDIKPRELR 180 (439)
T ss_pred eEeecCchhhcchhhhh
Confidence 99999999988777543
No 25
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=3.9e-39 Score=268.89 Aligned_cols=150 Identities=47% Similarity=0.743 Sum_probs=130.2
Q ss_pred EEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCC-Cc
Q psy17824 9 YFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGG-ES 87 (272)
Q Consensus 9 ~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg-~s 87 (272)
||||.+++ +|+|+|+||++.||.+|+||++|| ..++|+|+.||||+++++||+|++......+. ..
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~-----------~~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~ 67 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLC-----------TSGFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDS 67 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHH-----------HTTSSTTEBEEEEETTTEEEESSTTTSSSSTSEEB
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhh-----------cccccCCceeecccccceeeeeeccCCCCcccccc
Confidence 78887765 999999999999999999999999 45689999999999999999999754433111 12
Q ss_pred cCCCCCCCCCc--CcCCCcceeEeeeccC--CCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCC
Q psy17824 88 IYGGTFEDENF--ELKHDEPFLLSMANRG--KDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRP 163 (272)
Q Consensus 88 ~~g~~~~de~~--~~~h~~~G~lsm~~~g--~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P 163 (272)
..+.++++|.. .+.| .+|+|+|++.+ +++++|||||+|.++|+||+.|+|||+|++||+||++|+.++++. +|
T Consensus 68 ~~~~~~~~E~~~~~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p 144 (155)
T PF00160_consen 68 TGGEPIPDEFNPSLLKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RP 144 (155)
T ss_dssp TTBSCBSSSGBTTSSSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EB
T ss_pred cCccccccccccccccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--cc
Confidence 33446888874 4555 89999999876 788999999999999999999999999999999999999999876 99
Q ss_pred ccCeEEeEeee
Q psy17824 164 LQDVRVVKCNE 174 (272)
Q Consensus 164 ~~~i~I~~cg~ 174 (272)
..+|+|.+|||
T Consensus 145 ~~~v~I~~cgv 155 (155)
T PF00160_consen 145 KQDVTISSCGV 155 (155)
T ss_dssp SSTEEEEEEEE
T ss_pred CCCeEEEEeEC
Confidence 99999999996
No 26
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=4.7e-39 Score=266.02 Aligned_cols=143 Identities=53% Similarity=0.788 Sum_probs=129.5
Q ss_pred CeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCCCC
Q psy17824 16 DIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFED 95 (272)
Q Consensus 16 ~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~d 95 (272)
.|+.|+|+|+||.+.||.+|+||+.|| ..++|+|+.||||+|+++|||||+....+.+ +.++..+++
T Consensus 3 ~T~~G~i~IeL~~~~~P~~~~nF~~l~-----------~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~ 69 (146)
T cd00317 3 DTTKGRIVIELYGDEAPKTVENFLSLA-----------RGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPD 69 (146)
T ss_pred EeccCcEEEEEcCCCChHHHHHHHHHH-----------hcCCcCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCC
Confidence 478899999999999999999999999 4568999999999999999999975443322 456678888
Q ss_pred CCcCcC-CCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCccCeEEeE
Q psy17824 96 ENFELK-HDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVK 171 (272)
Q Consensus 96 e~~~~~-h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~~~i~I~~ 171 (272)
|..... |+.+|+|+|++.++++++|||||+|.++|+||+.|+|||+|++||+||++|+..+++++++|..+|+|..
T Consensus 70 E~~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 70 ENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred ccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 887655 8999999999999999999999999999999999999999999999999999999998999999999973
No 27
>KOG0415|consensus
Probab=100.00 E-value=3.4e-39 Score=292.94 Aligned_cols=157 Identities=40% Similarity=0.590 Sum_probs=145.9
Q ss_pred CCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCC--
Q psy17824 15 SDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGT-- 92 (272)
Q Consensus 15 ~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~-- 92 (272)
..|++|+|||.||.+.+|.+|.|||.|| +..||+.|.||-|..||.+|.||| +|+|.||.+|||..
T Consensus 5 ieTtlGDlvIDLf~~erP~~clNFLKLC-----------k~KYYN~clfh~vq~~f~aQTGDP-tGtG~GG~si~~~lyG 72 (479)
T KOG0415|consen 5 IETTLGDLVIDLFVKERPRTCLNFLKLC-----------KIKYYNFCLFHTVQRDFTAQTGDP-TGTGDGGESIYGVLYG 72 (479)
T ss_pred EEeecccEEeeeecccCcHHHHHHHHHH-----------hHhhcccceeeeccccceeecCCC-CCCCCCcceeeeeccc
Confidence 4599999999999999999999999999 789999999999999999999997 67999999998743
Q ss_pred -----CCCCC-cCcCCCcceeEeeeccCCCCCccEEEEEcCC-CCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCcc
Q psy17824 93 -----FEDEN-FELKHDEPFLLSMANRGKDTNGSQFFITTQP-APHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQ 165 (272)
Q Consensus 93 -----~~de~-~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~-~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~~ 165 (272)
|+.|. ..+.|...|+|||++.|.|.+||||||||++ +..||+.|+|||+|++||++|.+|+.+.+|.+++|++
T Consensus 73 ~q~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPyk 152 (479)
T KOG0415|consen 73 EQARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYK 152 (479)
T ss_pred ccchhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCccc
Confidence 55554 3799999999999999999999999999996 6799999999999999999999999999999999999
Q ss_pred CeEEeEeeeecccccchh
Q psy17824 166 DVRVVKCNELVLKSKLKA 183 (272)
Q Consensus 166 ~i~I~~cg~l~~~~~~~~ 183 (272)
+|+|.+.-+|.++|+.+.
T Consensus 153 dIRI~HTiiLdDPFddpp 170 (479)
T KOG0415|consen 153 DIRIKHTIILDDPFDDPP 170 (479)
T ss_pred ceeeeeeEEecCCCCCch
Confidence 999999999999998764
No 28
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=5.3e-37 Score=262.14 Aligned_cols=129 Identities=32% Similarity=0.446 Sum_probs=110.7
Q ss_pred CeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCC-C------------
Q psy17824 16 DIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGN-G------------ 82 (272)
Q Consensus 16 ~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~-g------------ 82 (272)
.|+.|+|+|+||++.||+||.||+.|| +.+||+++.||||+++|||||||+.... +
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~-----------~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~ 71 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLV-----------ERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTI 71 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHH-----------HhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccc
Confidence 488999999999999999999999999 6789999999999999999999975331 1
Q ss_pred -------CCCCccCCCCCC-----CCCcCcCCCcceeEeeeccC--CCCCccEEEEEcC-------CCCCCCCCCcEEEE
Q psy17824 83 -------TGGESIYGGTFE-----DENFELKHDEPFLLSMANRG--KDTNGSQFFITTQ-------PAPHLDGVHVVFGH 141 (272)
Q Consensus 83 -------~gg~s~~g~~~~-----de~~~~~h~~~G~lsm~~~g--~~s~~SqFfItl~-------~~p~ld~~~~VFG~ 141 (272)
..+.++|+..+. +++..+.|+.+|+|+||+.+ +++++|||||+++ ++|+||+.|+|||+
T Consensus 72 p~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~ 151 (176)
T cd01924 72 PLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGY 151 (176)
T ss_pred cceecccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEE
Confidence 123345554442 45667888899999999987 6999999999998 79999999999999
Q ss_pred EecCHHHHHHHhcC
Q psy17824 142 VVSGQNVVSHIENL 155 (272)
Q Consensus 142 Vi~G~dVl~~I~~~ 155 (272)
|++||+||++|+..
T Consensus 152 VveG~dvl~~I~~g 165 (176)
T cd01924 152 VTDGLDILRELKVG 165 (176)
T ss_pred EecCHHHHHhhcCC
Confidence 99999999999743
No 29
>KOG0882|consensus
Probab=97.76 E-value=3.2e-05 Score=73.90 Aligned_cols=144 Identities=22% Similarity=0.244 Sum_probs=115.2
Q ss_pred eEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCC----CccCC-CCCCC
Q psy17824 21 RIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGG----ESIYG-GTFED 95 (272)
Q Consensus 21 ~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg----~s~~g-~~~~d 95 (272)
-|.|+|+.+-.|..++-|..+| ..+++++..|.+|...+++|.||.......+| ++..+ ..|++
T Consensus 113 ~IAVs~~~sg~i~VvD~~~d~~-----------q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr 181 (558)
T KOG0882|consen 113 LIAVSLFKSGKIFVVDGFGDFC-----------QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPR 181 (558)
T ss_pred eEEeecccCCCcEEECCcCCcC-----------ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCcc
Confidence 8999999999999999999999 68899999999999999999999543333222 12222 11333
Q ss_pred --CCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCccCeEEeEee
Q psy17824 96 --ENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCN 173 (272)
Q Consensus 96 --e~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~~~i~I~~cg 173 (272)
.++.++|. ..++.+...-....+-+|+++....+.|..+..|||+|..|.++++.|....++....|..++.|.+..
T Consensus 182 ~~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Ve 260 (558)
T KOG0882|consen 182 TNLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVE 260 (558)
T ss_pred cccccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceee
Confidence 35567776 456666655555567889999999999999999999999999999999999999999999999999876
Q ss_pred eec
Q psy17824 174 ELV 176 (272)
Q Consensus 174 ~l~ 176 (272)
...
T Consensus 261 lgR 263 (558)
T KOG0882|consen 261 LGR 263 (558)
T ss_pred hhh
Confidence 554
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.43 E-value=0.012 Score=57.35 Aligned_cols=99 Identities=23% Similarity=0.365 Sum_probs=65.3
Q ss_pred eeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceee----CcEEEEeecCceeeecCccCCCCCCCCccCCCCCCC
Q psy17824 20 GRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYL----NIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFED 95 (272)
Q Consensus 20 G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~----g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~d 95 (272)
=.+.+||.+. ||.++++|+.+.. .|++. -.+|- +.++..|...+.
T Consensus 201 Ty~evE~~~~-~p~s~EH~la~~~-----------~G~~~Vd~~tsTfi-------------------~d~~L~g~~~p~ 249 (503)
T TIGR03268 201 TYVEVELDPN-APVSVEHFLALME-----------DGTFRVDYRTSTFI-------------------SDDSLRGLDKPE 249 (503)
T ss_pred EEEEEEEcCC-CChhHHHHHHHHh-----------CCeEEEeeeecceE-------------------ecccccCccCCc
Confidence 3577787664 7999999999983 33221 11111 112223444555
Q ss_pred CCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhc
Q psy17824 96 ENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIEN 154 (272)
Q Consensus 96 e~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~ 154 (272)
|++. ...+|+|++.|.|.. ....||...+.+. .-.|+|+|+|+.||++|+--..
T Consensus 250 En~~--~R~rGtVTVRn~G~G--~G~VYIYredr~s-s~sHtvVG~V~~GiELid~a~~ 303 (503)
T TIGR03268 250 ENIE--KRRRGAVTVRNSGVG--EGRVYIYREDRPS-SLSHNVVGHVTRGIELIDIAQE 303 (503)
T ss_pred cccC--cccceeEEEEeeccC--ceeEEEEcCCCCC-CcccceeEEEecceeeeecccC
Confidence 5543 345999999998754 3568998887653 2359999999999999975543
No 31
>PRK00969 hypothetical protein; Provisional
Probab=96.37 E-value=0.012 Score=57.52 Aligned_cols=99 Identities=21% Similarity=0.332 Sum_probs=65.7
Q ss_pred eeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCcccee----eCcEEEEeecCceeeecCccCCCCCCCCccCCCCCCC
Q psy17824 20 GRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHY----LNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFED 95 (272)
Q Consensus 20 G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y----~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~d 95 (272)
=.+.++|.++ ||.++++|+.+.. .|++ .-.+|- +.++..|...+.
T Consensus 204 Ty~eve~~~~-~p~s~EH~la~~~-----------~G~f~Vd~~tstfI-------------------~d~~L~g~~~p~ 252 (508)
T PRK00969 204 TYVEVELDPG-APKSVEHFLALLE-----------DGTFEVDFETSTFI-------------------ADDRLQGLKIPE 252 (508)
T ss_pred EEEEEEEcCC-CCchHHHHHHHHh-----------CCeEEEeeeecceE-------------------eeccccCccCCc
Confidence 3577788775 7999999999983 3322 112221 112223444555
Q ss_pred CCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhc
Q psy17824 96 ENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIEN 154 (272)
Q Consensus 96 e~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~ 154 (272)
|++. ...+|+|++.+.|.. ....||...+.+. .-.|+|+|+|+.||++|+--..
T Consensus 253 En~~--~R~~GtVTVRt~G~g--~G~vYIyredr~s-s~sHtvVG~V~~GiELi~~a~~ 306 (508)
T PRK00969 253 ENFE--PRRRGTVTVRTAGVG--VGKVYIYREDRPS-SLSHTVVGRVTHGIELIDFAKE 306 (508)
T ss_pred cccC--ccccceEEEEeeccC--ceeEEEECCCCCC-CccceeEEEEecceeeeecccC
Confidence 5544 345899999998754 3568998887653 2359999999999999875443
No 32
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.35 E-value=0.034 Score=54.33 Aligned_cols=130 Identities=22% Similarity=0.307 Sum_probs=75.7
Q ss_pred CCCCeEEEEEEECC------ee-ceeEEEEEcCCCChhHHHHHHHHhccc--CCCCccCCccceeeCcEEEEeecCceee
Q psy17824 3 LIRPRCYFDVEISD------IP-LGRIVFELYSDICPITCENFRALCTGE--KGIGKTTGKNLHYLNIVFHRVVKGFMIQ 73 (272)
Q Consensus 3 ~~~p~v~~di~v~~------t~-~G~IvIeL~~d~aP~t~~nF~~L~~g~--~g~g~~~~k~~~Y~g~~f~Rvi~~f~iq 73 (272)
.+.|...|||.-.+ .+ ---|.|+||.+.||.||.-|..+. |- +.+| -..+|-..++.++-
T Consensus 351 ~Q~P~~TldIL~~~kV~~~~v~~~~vi~IeLydd~AP~s~~yFRk~t-GL~~~~VG----------~L~v~F~~~d~~mF 419 (503)
T TIGR03268 351 KQEPPYTLDVLKEGKVKVEGVPKDKVIEIELYDDNAPRSVWYFRKFT-GLKTKPVG----------RLPVHFAFKEMIMF 419 (503)
T ss_pred ecCCchHHHHhhcCcEEEEeeChHhEEEEEEcccCCchHHHHHHHhc-CCcccccc----------eeEEEEEeCCeeEe
Confidence 35566666653221 11 246889999999999999998876 21 1111 23556666775444
Q ss_pred ecCccCCCCCCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEc------CCC-CCCCCCCcEEEEEecCH
Q psy17824 74 SGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITT------QPA-PHLDGVHVVFGHVVSGQ 146 (272)
Q Consensus 74 gGd~~~~~g~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl------~~~-p~ld~~~~VFG~Vi~G~ 146 (272)
=|+.. ++..+.+||..-.-..+|.|+|-|......|- .-|-| +|. ..+++ .-++|+|++++
T Consensus 420 k~~~~----------~~k~LiPEN~P~~~V~ag~IgvTN~a~k~~G~-IGVRl~d~defGPTGE~F~g-TNIiG~Vv~~~ 487 (503)
T TIGR03268 420 KGNKE----------LAKGLIPENTPEDKVEAGVIGVTNQACKHVGM-IGVRLEDSDEFGPTGEPFSG-TNIIGRVVEGM 487 (503)
T ss_pred ccCch----------hccccCCCCCCCCccccceEeeechhhhcCce-EEEEccCCcccCCCCCCccC-cceEEEecCCh
Confidence 33321 22345566665556668888887754221110 11222 232 23445 34789999999
Q ss_pred HHHHHHhcC
Q psy17824 147 NVVSHIENL 155 (272)
Q Consensus 147 dVl~~I~~~ 155 (272)
+.|..|...
T Consensus 488 e~Lk~~KeG 496 (503)
T TIGR03268 488 ERLKGLKEG 496 (503)
T ss_pred hHhcccccC
Confidence 999887653
No 33
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.014 Score=55.49 Aligned_cols=103 Identities=23% Similarity=0.375 Sum_probs=66.2
Q ss_pred eeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCCCCCCcC
Q psy17824 20 GRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFE 99 (272)
Q Consensus 20 G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~~~ 99 (272)
=.+.++|... +|.++++|++|... |. -...|.-.+|- +.++..+...+.+++.
T Consensus 203 Ty~eve~s~n-sP~saEH~lalmed--G~-----lri~~~tntfi-------------------s~~~lq~~~~~~en~d 255 (512)
T COG4070 203 TYFEVELSRN-SPKSAEHFLALMED--GT-----LRIDVTTNTFI-------------------SDDTLQEEKVPEENFD 255 (512)
T ss_pred EEEEEEeCCC-CchhHHHHHHHhhc--ce-----EEEEEecccee-------------------eccccccccCChhhhh
Confidence 4677888775 69999999999821 10 01122222221 2223334456666766
Q ss_pred cCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhc
Q psy17824 100 LKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIEN 154 (272)
Q Consensus 100 ~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~ 154 (272)
+. .+|.+++.|.|.+ ...-||.-.+.+.- -.|.|+|+|++||++|+-...
T Consensus 256 ~R--erG~iTvRn~Gvg--eGrvYIyRedR~ss-~sHnvVGrV~eGiELid~a~e 305 (512)
T COG4070 256 LR--ERGAITVRNVGVG--EGRVYIYREDRPSS-LSHNVVGRVIEGIELIDLAEE 305 (512)
T ss_pred hh--hcceEEEEeeecc--cceEEEEecCCCCc-cccceeeeeecceEEEEeccc
Confidence 54 4899999988744 45788887664432 358999999999999876554
No 34
>PRK00969 hypothetical protein; Provisional
Probab=96.00 E-value=0.058 Score=52.85 Aligned_cols=129 Identities=21% Similarity=0.277 Sum_probs=77.0
Q ss_pred CCCCeEEEEEEECC------ee-ceeEEEEEcCCCChhHHHHHHHHhccc--CCCCccCCccceeeCcEEEEeecCceee
Q psy17824 3 LIRPRCYFDVEISD------IP-LGRIVFELYSDICPITCENFRALCTGE--KGIGKTTGKNLHYLNIVFHRVVKGFMIQ 73 (272)
Q Consensus 3 ~~~p~v~~di~v~~------t~-~G~IvIeL~~d~aP~t~~nF~~L~~g~--~g~g~~~~k~~~Y~g~~f~Rvi~~f~iq 73 (272)
.+.|...|||.-.+ .+ ---|.|+||.+.||.||.-|..+. |- +-+| -..+|-..++.++-
T Consensus 354 ~Q~P~~TldIL~~~kV~~~~i~~~~vi~IeLydd~AP~s~~yFR~~t-GL~~~~VG----------~L~v~F~~~d~~lF 422 (508)
T PRK00969 354 EQTPETTLDILKEKKVKTKGIPKDKLIEIELYDDKAPRTVWYFRKVT-GLKTKPVG----------KLPVYFKYEDTYLF 422 (508)
T ss_pred ecCCchHHHHhhcCcEEEEeeCHHHEEEEEEcCcCCchHHHHHHHhc-CCcccccc----------eeEEEEEeCCeEEE
Confidence 45666666664322 11 246889999999999999998876 21 1111 23566666775555
Q ss_pred ecCccCCCCCCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEc------CCC-CCCCCCCcEEEEEecCH
Q psy17824 74 SGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITT------QPA-PHLDGVHVVFGHVVSGQ 146 (272)
Q Consensus 74 gGd~~~~~g~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl------~~~-p~ld~~~~VFG~Vi~G~ 146 (272)
-|+.. ++..+.+||..-.-..+|.|+|-|......|- .-|-| +|. ..+++ .-++|+|+ ++
T Consensus 423 k~~~~----------~~k~liPEN~P~~~V~ag~IgvTN~a~k~~G~-iGVR~~d~d~fGPTGE~F~g-TNIIGrVv-~~ 489 (508)
T PRK00969 423 KGNIE----------YAKGLLPENTPEDKVKAGEIGVTNMAAKYKGM-IGVRLSDNDEFGPTGEPFEG-TNIIGRVV-NL 489 (508)
T ss_pred ccChh----------hccccCCCCCCCCccccceEeeechhhhcCce-EEEEccCCcccCCCCCCccC-ceeEEEec-Ch
Confidence 44432 23345666666666778888887754221110 11222 232 23444 45899999 99
Q ss_pred HHHHHHhcC
Q psy17824 147 NVVSHIENL 155 (272)
Q Consensus 147 dVl~~I~~~ 155 (272)
+-|..|...
T Consensus 490 e~Lk~lKeG 498 (508)
T PRK00969 490 EKLKKLKEG 498 (508)
T ss_pred HHhcccccC
Confidence 998887754
No 35
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=95.04 E-value=0.11 Score=43.17 Aligned_cols=107 Identities=19% Similarity=0.168 Sum_probs=54.6
Q ss_pred eeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCc--eeeecCccCCCCCCCCccCCCCCCCCC
Q psy17824 20 GRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGF--MIQSGDFSVGNGTGGESIYGGTFEDEN 97 (272)
Q Consensus 20 G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f--~iqgGd~~~~~g~gg~s~~g~~~~de~ 97 (272)
-.++.+|+.|.||.||+.|.++- =|.+..+|-..-+. +|.-+++.. ....-||
T Consensus 8 ~~~~A~l~~d~AP~Tcaa~~~~L--------------P~~~~~~HarwSG~ei~~~l~~~~~-----------~~~~~EN 62 (147)
T PF12903_consen 8 VSFTARLLDDKAPKTCAAFWEAL--------------PLKGKVIHARWSGEEIWIPLPDFDP-----------FEPGREN 62 (147)
T ss_dssp EEEEEEE-TTTSHHHHHHHHHH----------------EEEE-EE-SSSSSEEEEEEE--SS-----------S---S-S
T ss_pred eEEEEEEcccCChHHHHHHHHhC--------------CCCCcEEEEEEECcEEEEECCCcCc-----------CCCCCCc
Confidence 36889999999999999999987 27777777776653 445555420 1112233
Q ss_pred cCcCCCcceeEeee--c-cC----CC-CCccEEEEEcCC------CCCCCCCCcEEEEEecCHHHHHHHhc
Q psy17824 98 FELKHDEPFLLSMA--N-RG----KD-TNGSQFFITTQP------APHLDGVHVVFGHVVSGQNVVSHIEN 154 (272)
Q Consensus 98 ~~~~h~~~G~lsm~--~-~g----~~-s~~SqFfItl~~------~p~ld~~~~VFG~Vi~G~dVl~~I~~ 154 (272)
... |-.+|-|.+. . .. +. .+...+|+-.++ .-+|-+ .+|++|++|++-|.++.+
T Consensus 63 ~T~-~P~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~G--N~FatI~egle~la~~~~ 130 (147)
T PF12903_consen 63 HTV-TPIPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPG--NHFATITEGLEELAEACR 130 (147)
T ss_dssp EES-S--TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE--E--EEEEEEEESHHHHHHHHH
T ss_pred Ccc-cCCCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccce--eEEEEEcCCHHHHHHHHH
Confidence 322 2235555544 1 00 11 122334443332 223333 589999999997776654
No 36
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.15 Score=48.70 Aligned_cols=112 Identities=21% Similarity=0.289 Sum_probs=58.2
Q ss_pred eEEEEEcCCCChhHHHHHHHHhcc--cCCCCccCCccceeeCcEEEEeecCc-eee-ecCccCCCCCCCCccCCCCCCCC
Q psy17824 21 RIVFELYSDICPITCENFRALCTG--EKGIGKTTGKNLHYLNIVFHRVVKGF-MIQ-SGDFSVGNGTGGESIYGGTFEDE 96 (272)
Q Consensus 21 ~IvIeL~~d~aP~t~~nF~~L~~g--~~g~g~~~~k~~~Y~g~~f~Rvi~~f-~iq-gGd~~~~~g~gg~s~~g~~~~de 96 (272)
-|.||||.+.||.++.-|..+. | .+-+| -..+|-..+|. ++. -|+... +.-+.+|
T Consensus 377 iieIELyed~APrSv~yFRr~t-~l~~kpVG----------kL~Vhfay~d~~~vmfegn~~~----------~K~llPE 435 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRST-GLKTKPVG----------KLKVHFAYDDTYLVMFEGNAVL----------AKGLLPE 435 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhc-cccccccc----------ceEEEEEeCCceEEEEcCChHH----------hccCCCC
Confidence 5899999999999999998876 2 11122 22455555552 222 233221 2223344
Q ss_pred CcCcCCCcceeEeeeccCCCCCccEEEEEcC------CCC-CCCCCCcEEEEEecCHHHHHHHhcC
Q psy17824 97 NFELKHDEPFLLSMANRGKDTNGSQFFITTQ------PAP-HLDGVHVVFGHVVSGQNVVSHIENL 155 (272)
Q Consensus 97 ~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~------~~p-~ld~~~~VFG~Vi~G~dVl~~I~~~ 155 (272)
|..-....+|.|++.|......|. .-+-|. |.. .+. ..-++|+|++|.+-|..|...
T Consensus 436 N~P~d~Ve~g~iGvTN~a~r~~Gm-IGVRL~dsdefGPTGE~Fe-~TNiIGrIveg~e~l~~ikeG 499 (512)
T COG4070 436 NTPADTVEAGEIGVTNQAARHMGM-IGVRLEDSDEFGPTGEKFE-GTNIIGRIVEGPERLIGIKEG 499 (512)
T ss_pred CCchhheecccccccccchhccce-eEEEeccccccCCCCCccc-cceeehhhccChHHhcccccC
Confidence 443333334444433322111110 111122 211 222 346899999999999888763
No 37
>KOG2572|consensus
Probab=88.21 E-value=0.54 Score=45.07 Aligned_cols=6 Identities=0% Similarity=0.191 Sum_probs=2.6
Q ss_pred EEeecC
Q psy17824 64 HRVVKG 69 (272)
Q Consensus 64 ~Rvi~~ 69 (272)
.-|.||
T Consensus 278 ~~iAPn 283 (498)
T KOG2572|consen 278 RTIAPN 283 (498)
T ss_pred Hhhcch
Confidence 334444
No 38
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=84.66 E-value=6.9 Score=31.23 Aligned_cols=46 Identities=17% Similarity=0.163 Sum_probs=28.4
Q ss_pred cceeEeeeccCCCCCccEEEEEcCCCC-------CCCCCCcEEEEEecCHHHHHHHhc
Q psy17824 104 EPFLLSMANRGKDTNGSQFFITTQPAP-------HLDGVHVVFGHVVSGQNVVSHIEN 154 (272)
Q Consensus 104 ~~G~lsm~~~g~~s~~SqFfItl~~~p-------~ld~~~~VFG~Vi~G~dVl~~I~~ 154 (272)
..|-|+.-..+.+ |.|-+++.| .+....+++|+|++|.+.|..|..
T Consensus 61 ~~GDi~Yw~pg~~-----l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 61 EAGDIAYWPPGGA-----LAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp -TTEEEEECCCTE-----EEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred cCceEEEeCCCCE-----EEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 4677776554433 777777764 445668999999999998887754
No 39
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=82.89 E-value=9.1 Score=31.03 Aligned_cols=48 Identities=17% Similarity=0.298 Sum_probs=34.8
Q ss_pred eEEEEEEECCeeceeEEEEEcCCCCh---------hHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecC
Q psy17824 7 RCYFDVEISDIPLGRIVFELYSDICP---------ITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKG 69 (272)
Q Consensus 7 ~v~~di~v~~t~~G~IvIeL~~d~aP---------~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~ 69 (272)
.||+. +..||+.+..-.+.|+ .++..|++... +-..-+-++|+-++++
T Consensus 5 NIfLE-----sd~grvkl~~~~~~~~c~~~~~~~~~Av~~Fl~~L~----------kyI~veeStFylvvrd 61 (130)
T PF06138_consen 5 NIFLE-----SDSGRVKLRYEEPDCKCARTGCEARRAVKHFLSVLK----------KYIDVEESTFYLVVRD 61 (130)
T ss_pred EEEEe-----ccCceeEEEEeCCCcccccccchHHHHHHHHHHHHH----------hhEEecccEEEEEEec
Confidence 35555 8889888777755433 26789999883 4445678999999998
No 40
>KOG2270|consensus
Probab=80.64 E-value=1.7 Score=42.13 Aligned_cols=10 Identities=20% Similarity=0.248 Sum_probs=5.5
Q ss_pred hHHHHHHHHh
Q psy17824 33 ITCENFRALC 42 (272)
Q Consensus 33 ~t~~nF~~L~ 42 (272)
+-..|+..|.
T Consensus 215 KE~RNLkRl~ 224 (520)
T KOG2270|consen 215 KEMRNLKRLN 224 (520)
T ss_pred HHHHHHHHHH
Confidence 3445666665
No 41
>PHA03001 putative virion core protein; Provisional
Probab=79.05 E-value=12 Score=30.37 Aligned_cols=48 Identities=23% Similarity=0.434 Sum_probs=33.8
Q ss_pred eEEEEEEECCeeceeEEEEEc--CCCChh------HHHHHHHHhcccCCCCccCCccceeeCcEEEEeecC
Q psy17824 7 RCYFDVEISDIPLGRIVFELY--SDICPI------TCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKG 69 (272)
Q Consensus 7 ~v~~di~v~~t~~G~IvIeL~--~d~aP~------t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~ 69 (272)
.||+. +..|++.+..- ...||. ++++|+++.. +-..-+-++|+-++++
T Consensus 5 NIfLE-----sd~grvkl~~~~~~~~~~~~~~~~ka~~~fl~~L~----------kYi~v~eStFylvvrd 60 (132)
T PHA03001 5 NIFLE-----TDAGRVKLAIENPDKVCATKAEMRKAINKFLELLK----------KYIHVDKSTFYLVVKD 60 (132)
T ss_pred EEEEe-----ccCCceEEEEcCCCccccccchHHHHHHHHHHHHH----------hhEEecccEEEEEEec
Confidence 45555 77887666553 444554 6789999882 4456788999999988
No 42
>KOG2573|consensus
Probab=73.24 E-value=1 Score=43.29 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=13.9
Q ss_pred CCCCcEEEEEecCHHHHHHHhcCCC
Q psy17824 133 DGVHVVFGHVVSGQNVVSHIENLPV 157 (272)
Q Consensus 133 d~~~~VFG~Vi~G~dVl~~I~~~~~ 157 (272)
+...++||.++. ..|=++|+-..+
T Consensus 389 e~pts~fGe~Lr-~qVEeRL~fy~t 412 (498)
T KOG2573|consen 389 EDPTSVFGEKLR-EQVEERLEFYET 412 (498)
T ss_pred cCCchHHHHHHH-HHHHHHHHhhhc
Confidence 445678887654 234466665544
No 43
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=48.15 E-value=46 Score=31.93 Aligned_cols=53 Identities=23% Similarity=0.333 Sum_probs=42.9
Q ss_pred ccEEEEEcC---------CCCCCCCCCcEEEEEecCHH-HHHHHhcCCCCCCCCCccCeEEeEe
Q psy17824 119 GSQFFITTQ---------PAPHLDGVHVVFGHVVSGQN-VVSHIENLPVDKMSRPLQDVRVVKC 172 (272)
Q Consensus 119 ~SqFfItl~---------~~p~ld~~~~VFG~Vi~G~d-Vl~~I~~~~~d~~~~P~~~i~I~~c 172 (272)
+-+||++-+ |-||.-|.||+=|..++=|+ .|++|..+|... .....+..+.|+
T Consensus 247 ~vE~Fv~~dg~llvNEiAPRvHNSGH~T~~gc~~SQFEqHlRAv~glPLg~-~~~~~p~vMvNl 309 (375)
T COG0026 247 AVEFFVTPDGELLVNEIAPRVHNSGHWTIDGCETSQFEQHLRAVLGLPLGS-TTLLSPSVMVNL 309 (375)
T ss_pred EEEEEEECCCcEEEeeccCCCCCccccchhhccccHHHHHHHHHhCCCCCC-ccccCceEEEEe
Confidence 457888754 67899999999999999885 899999999954 666667777776
No 44
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=41.10 E-value=17 Score=34.64 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=34.9
Q ss_pred CcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEec-CHHHHHHHhc
Q psy17824 103 DEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVS-GQNVVSHIEN 154 (272)
Q Consensus 103 ~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~-G~dVl~~I~~ 154 (272)
..+|.|.+.|........+.-|++.+.|. |++.-|+|+|.+ -+.+|+-|..
T Consensus 298 r~~G~ItIdN~~ygRY~GElQI~~~dlp~-d~rvNViG~V~~~d~~LLd~I~~ 349 (357)
T PF05913_consen 298 RKRGDITIDNENYGRYKGELQIVKKDLPA-DERVNVIGRVDEEDLPLLDYIKP 349 (357)
T ss_dssp B-TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--T
T ss_pred ccCceEEEeCCCccccccEEEEEcccCCC-CCCeeEEEEECHHHHHHHHhcCC
Confidence 56899999998777777899999999986 888999999996 5788887763
No 45
>KOG0526|consensus
Probab=40.96 E-value=12 Score=37.36 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=20.8
Q ss_pred CeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHh
Q psy17824 6 PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALC 42 (272)
Q Consensus 6 p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~ 42 (272)
+.|.|.=...-|+-||.-|.+|+ +|++|-
T Consensus 200 aI~~f~~i~~lTPRGRYdI~iy~--------t~lrL~ 228 (615)
T KOG0526|consen 200 AIVSFEEILCLTPRGRYDIKIYP--------TFLRLH 228 (615)
T ss_pred ceEEeeeeeeecCCccceeEEeh--------hhhhhc
Confidence 44555544555899999999987 577776
No 46
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=34.63 E-value=75 Score=29.60 Aligned_cols=34 Identities=6% Similarity=-0.159 Sum_probs=22.0
Q ss_pred CCCCeEEEEEEECCeec--eeEEEEEcCCCChhHHH
Q psy17824 3 LIRPRCYFDVEISDIPL--GRIVFELYSDICPITCE 36 (272)
Q Consensus 3 ~~~p~v~~di~v~~t~~--G~IvIeL~~d~aP~t~~ 36 (272)
...|..|.-.+.+..++ ..+.|.|.+...|.+.-
T Consensus 63 ~~s~~~f~~yaTGR~~~~~~~v~l~L~~Rqdl~~~l 98 (321)
T PF07946_consen 63 KDSPNEFTFYATGRRNCEGLLVTLKLKKRQDLFSWL 98 (321)
T ss_pred hcCcceEEEEEeCCCCeEEEEEEEEECCCcCHHHHH
Confidence 34566666666666554 46777888887776543
No 47
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=31.74 E-value=58 Score=23.19 Aligned_cols=29 Identities=28% Similarity=0.294 Sum_probs=22.3
Q ss_pred CCCCCcEEEEEecCHHHHHHHhcCCCCCCCC
Q psy17824 132 LDGVHVVFGHVVSGQNVVSHIENLPVDKMSR 162 (272)
Q Consensus 132 ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~ 162 (272)
+|..-.++|+|++| -+..|....+|+.+.
T Consensus 16 ~d~~G~~vG~vveG--d~k~L~G~~vd~~G~ 44 (64)
T PF12396_consen 16 VDDDGNVVGRVVEG--DPKKLVGKKVDEDGD 44 (64)
T ss_pred ECCCCCEEEEEecC--CHHHhcCCcCCCCCC
Confidence 45567899999999 566777777877663
No 48
>PF09428 DUF2011: Fungal protein of unknown function (DUF2011); InterPro: IPR018555 This is a family of fungal proteins whose function is unknown.
Probab=31.00 E-value=1.1e+02 Score=25.03 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=14.7
Q ss_pred ecCHHHHHHHhcCCCCCCCCCcc
Q psy17824 143 VSGQNVVSHIENLPVDKMSRPLQ 165 (272)
Q Consensus 143 i~G~dVl~~I~~~~~d~~~~P~~ 165 (272)
|+|.+||......+-.....|..
T Consensus 40 Vs~d~Il~~~~~~~w~g~~~pwR 62 (131)
T PF09428_consen 40 VSGDDILEQSKQRPWPGCELPWR 62 (131)
T ss_pred cCHHHHHHHHhcCCCCCCCCCce
Confidence 47889998888665533334443
No 49
>KOG0526|consensus
Probab=30.97 E-value=15 Score=36.77 Aligned_cols=10 Identities=20% Similarity=0.640 Sum_probs=5.9
Q ss_pred CCeEEEEEEE
Q psy17824 5 RPRCYFDVEI 14 (272)
Q Consensus 5 ~p~v~~di~v 14 (272)
-+++||-|.+
T Consensus 252 ~rh~~fVisl 261 (615)
T KOG0526|consen 252 QRHVYFVISL 261 (615)
T ss_pred CceEEEEEec
Confidence 3466666655
No 50
>KOG4043|consensus
Probab=29.29 E-value=46 Score=28.27 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=6.3
Q ss_pred CCccCeEEeEe
Q psy17824 162 RPLQDVRVVKC 172 (272)
Q Consensus 162 ~P~~~i~I~~c 172 (272)
.|+.++.+...
T Consensus 109 lpLTp~qlaGF 119 (214)
T KOG4043|consen 109 LPLTPSQLAGF 119 (214)
T ss_pred ccCChhhhcce
Confidence 56666655543
No 51
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=27.37 E-value=38 Score=26.67 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=17.6
Q ss_pred eeEEEEEcCCCChhHHHHHHHH
Q psy17824 20 GRIVFELYSDICPITCENFRAL 41 (272)
Q Consensus 20 G~IvIeL~~d~aP~t~~nF~~L 41 (272)
|.-+++|+... |.++.....-
T Consensus 13 g~c~~eL~ee~-pE~vr~i~d~ 33 (126)
T COG2164 13 GHCTGELDEEN-PESVRRIYDS 33 (126)
T ss_pred ceEEEEccccC-hHHHHHHHHh
Confidence 88999999998 9999876543
No 52
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.55 E-value=66 Score=22.80 Aligned_cols=10 Identities=30% Similarity=0.650 Sum_probs=8.8
Q ss_pred CCCCeEEEEE
Q psy17824 3 LIRPRCYFDV 12 (272)
Q Consensus 3 ~~~p~v~~di 12 (272)
..+|+||+||
T Consensus 34 ~~HPrV~L~m 43 (62)
T COG4391 34 NDHPRVFLDM 43 (62)
T ss_pred CCCCEEEEEc
Confidence 4789999998
No 53
>COG1765 Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=23.34 E-value=1.3e+02 Score=24.25 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=32.7
Q ss_pred CCCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeec
Q psy17824 3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVK 68 (272)
Q Consensus 3 ~~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~ 68 (272)
...|++|+.| .|.|.+.+|..+....+++.++. .+.|++++.+.
T Consensus 81 ~~~~~~~~~i--------~i~~~v~gd~~~e~~~~~i~~a~--------------ek~C~v~~~L~ 124 (137)
T COG1765 81 EEEPRGFTEI--------NIHFVVKGDLDEEKLKRAVELAE--------------EKYCPVSRTLT 124 (137)
T ss_pred cCCCceEEEE--------EEEEEEecCCCHHHHHHHHHHHh--------------cccCcHhhhhc
Confidence 3456666663 57788888999999999999993 33577777654
No 54
>KOG3064|consensus
Probab=22.21 E-value=32 Score=31.41 Aligned_cols=6 Identities=17% Similarity=0.783 Sum_probs=2.4
Q ss_pred EEEEEe
Q psy17824 138 VFGHVV 143 (272)
Q Consensus 138 VFG~Vi 143 (272)
++|.++
T Consensus 174 ~Ygd~y 179 (303)
T KOG3064|consen 174 TYGDIY 179 (303)
T ss_pred CcCCcc
Confidence 344433
No 55
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=20.60 E-value=1.5e+02 Score=27.61 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=18.8
Q ss_pred EcCCCCCCCCCCcEEEEEec------CHHHHHHHhc
Q psy17824 125 TTQPAPHLDGVHVVFGHVVS------GQNVVSHIEN 154 (272)
Q Consensus 125 tl~~~p~ld~~~~VFG~Vi~------G~dVl~~I~~ 154 (272)
.+.+.+.|...++|+...-+ .-.+++.|+.
T Consensus 152 ~~~~~~~Lp~~~~vmsEs~e~~~~il~~~~~~~l~~ 187 (321)
T PF07946_consen 152 KTSESPKLPESLVVMSESNEVTDFILTPELIKALNK 187 (321)
T ss_pred ccccccCCCcceEEEEccHhHHHHHhChHHHHHHHh
Confidence 34556788888888877654 2235555653
No 56
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.49 E-value=36 Score=25.18 Aligned_cols=12 Identities=33% Similarity=0.863 Sum_probs=9.8
Q ss_pred CCCCeEEEEEEE
Q psy17824 3 LIRPRCYFDVEI 14 (272)
Q Consensus 3 ~~~p~v~~di~v 14 (272)
..||+||+|+..
T Consensus 8 kGRPrVfyDvTl 19 (77)
T cd04898 8 KGRPRVFYDITL 19 (77)
T ss_pred CCCcceeeehHH
Confidence 479999999854
No 57
>KOG2507|consensus
Probab=20.32 E-value=87 Score=30.68 Aligned_cols=12 Identities=42% Similarity=0.562 Sum_probs=6.9
Q ss_pred ccEEEEEcCCCC
Q psy17824 119 GSQFFITTQPAP 130 (272)
Q Consensus 119 ~SqFfItl~~~p 130 (272)
-|-|||-....|
T Consensus 79 Ps~ffIg~sGtp 90 (506)
T KOG2507|consen 79 PSIFFIGFSGTP 90 (506)
T ss_pred cceeeecCCCce
Confidence 355777665544
Done!