RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17824
(272 letters)
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP:
b.62.1.1 PDB: 1a33_A 1c5f_A*
Length = 177
Score = 331 bits (852), Expect = e-117
Identities = 108/173 (62%), Positives = 127/173 (73%)
Query: 4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVF 63
R R + DV I GRIV ELY+DI P TC NF LCTG G GK +GK LHY F
Sbjct: 5 DRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTF 64
Query: 64 HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
HRV+K FMIQ GDF+ G+GTGGESIYGG F+DE F +KHDEPF++SMAN+G +TNGSQFF
Sbjct: 65 HRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFF 124
Query: 124 ITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
ITT PAPHL+ +HVVFG VVSGQ VV+ IE L + +RPL DV ++ C ELV
Sbjct: 125 ITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGELV 177
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane,
repeat, rotamase, peptidylprolyl isomerase, structural
genomics; 2.00A {Homo sapiens}
Length = 192
Score = 332 bits (853), Expect = e-117
Identities = 121/177 (68%), Positives = 137/177 (77%)
Query: 2 KLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNI 61
P+C+FD+EI+ P+GRI+F+L+SDICP TC+NF LC+GEKG+GKTTGK L Y
Sbjct: 16 PRGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGS 75
Query: 62 VFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQ 121
FHRVVK FMIQ GDFS GNG GGESIYGG F+DENF LKHD FLLSMANRGK TNGSQ
Sbjct: 76 TFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQ 135
Query: 122 FFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLK 178
FFITT+PAPHLDGVHVVFG V+SG V+ IENL D SRP DVRV+ C L K
Sbjct: 136 FFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLATK 192
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA
splicing, alternative splicing, nucleus, rotamase,
cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A*
2gw2_A
Length = 179
Score = 331 bits (851), Expect = e-116
Identities = 119/175 (68%), Positives = 142/175 (81%)
Query: 1 MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLN 60
+K+ RPRC+FD+ I++ P GR+VFEL+SD+CP TCENFR LCTGEKG GK+T K LHY +
Sbjct: 5 IKVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKS 64
Query: 61 IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGS 120
+FHRVVK FM+Q GDFS GNG GGESIYGG FEDE+F +KH++ FLLSMANRGKDTNGS
Sbjct: 65 CLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGS 124
Query: 121 QFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
QFFITT+P PHLDG HVVFG V+SGQ VV IEN D S+P +VR++ C EL
Sbjct: 125 QFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin,
peptidyl-prolyl-CIS/trans isomerase, spliceosome,
U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
SCOP: b.62.1.1 PDB: 1qoi_A
Length = 177
Score = 306 bits (787), Expect = e-107
Identities = 83/172 (48%), Positives = 104/172 (60%), Gaps = 3/172 (1%)
Query: 4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVF 63
+ P +FDV I +GR+ EL++D+ P T ENFR CTGE G + Y F
Sbjct: 9 VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFR---KDGVPIGYKGSTF 65
Query: 64 HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
HRV+K FMIQ GDF G+GTG SIY G F DENF+L+H P LLSMAN G TNG QFF
Sbjct: 66 HRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFF 125
Query: 124 ITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
IT LDG HVVFG ++ G V+ IEN+P ++P V + +C E+
Sbjct: 126 ITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A
{Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A
1e8k_A 1dyw_A 2igw_A 2hqj_A
Length = 173
Score = 296 bits (761), Expect = e-103
Identities = 92/173 (53%), Positives = 114/173 (65%), Gaps = 2/173 (1%)
Query: 3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIV 62
+ R + +FD+ I GRIV ELY D+ P T NFRALCTGE GIGK+ GK LH+
Sbjct: 1 MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKS-GKPLHFKGSK 59
Query: 63 FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
FHR++ FMIQ GDF+ GNGTGGESIYG F DENF+ KH P +LSMAN G +TNGSQF
Sbjct: 60 FHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQF 119
Query: 123 FITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
F+ T LDG HVVFG VV G +VV +E+ +P++D + C +L
Sbjct: 120 FLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQS-GKPVKDCMIADCGQL 171
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin, isomerase, S
genomics, structural genomics consortium; HET: BMT;
1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Length = 186
Score = 295 bits (757), Expect = e-102
Identities = 96/168 (57%), Positives = 111/168 (66%), Gaps = 2/168 (1%)
Query: 5 RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFH 64
P YFD+ I P GRI EL++D PIT ENFRALCTGEKG+G++ GK L Y FH
Sbjct: 19 NPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQS-GKPLCYTGSFFH 77
Query: 65 RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFI 124
R++ FMIQ GDF+ G+GTGGESIYG F DENF HD PFLLSMAN G +TNGSQFFI
Sbjct: 78 RIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFI 137
Query: 125 TTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKC 172
TT P P LDG HVVFG V+ G VV IE +P + V +
Sbjct: 138 TTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQN-GKPTKSVCITAS 184
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, cyclophilin-cyclosporin complex,
immunosuppressant, cyclophilin; HET: BMT; 2.1A
{Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Length = 170
Score = 294 bits (756), Expect = e-102
Identities = 96/171 (56%), Positives = 116/171 (67%), Gaps = 3/171 (1%)
Query: 5 RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFH 64
R + +FD+ I + GRI+FEL+SDI P TCENFRALCTGEK + GKNLHY N +FH
Sbjct: 3 RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKI--GSRGKNLHYKNSIFH 60
Query: 65 RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFI 124
R++ FM Q GD + GNG+GGESIYG +F DENF +KHD+P LLSMAN G +TN SQFFI
Sbjct: 61 RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFI 120
Query: 125 TTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
T P P LDG HVVFG V+ G NVV +E + V + C EL
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKS-GYVKRSVVITDCGEL 170
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 301 bits (772), Expect = e-102
Identities = 116/260 (44%), Positives = 148/260 (56%), Gaps = 9/260 (3%)
Query: 5 RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFH 64
PR +FDV+I +GRIV EL++DI P T ENFRALCTGEKGIG TTGK LH+ FH
Sbjct: 15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFH 74
Query: 65 RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFI 124
R++K FMIQ GDFS NGTGGESIYG FEDENF KHD+ LLSMAN G +TNGSQFFI
Sbjct: 75 RIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFI 134
Query: 125 TTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSKLKAK 184
TT P PHLDG HVVFG V+ G V +EN+ V +P + + +C EL +
Sbjct: 135 TTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKPAKLCVIAECGEL-KEGDDWGI 192
Query: 185 EKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAK-------KRKKHKKDKKKKKKKSKY 237
+ S S D + + K+ + ++ K K + + KK K +Y
Sbjct: 193 FPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRY 252
Query: 238 EEEEEKEEGEQTDSEKEAKK 257
E + ++ +
Sbjct: 253 VEGSRAAAEDADGAKLQPVA 272
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A
{Mimivirus}
Length = 234
Score = 293 bits (751), Expect = e-101
Identities = 51/219 (23%), Positives = 82/219 (37%), Gaps = 22/219 (10%)
Query: 5 RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGK---------N 55
PR Y D+ +++ +GR+ +L+ D P ENF L G+ + G N
Sbjct: 14 NPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHIN 73
Query: 56 LHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFED---ENFELKHDEPFLLSMA- 111
Y FH V+ I SGD NG+ ++Y ++ H+ LLS+
Sbjct: 74 RTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLVP 133
Query: 112 ---NRGKDTNGSQFFIT------TQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSR 162
G S F IT + LD VV G V G +V+ I ++ R
Sbjct: 134 YTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGR 193
Query: 163 PLQDVRVVKCNELVLKSKLKAKEKRKASPTSASSDESDK 201
+ KC + S+ + K + T ++ +
Sbjct: 194 KYPTFSIGKCGAYLDSSQAQRKRPVNVNGTKRFLNKPTR 232
>1z81_A Cyclophilin; structural genomics, structural genomics consortium,
SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP:
b.62.1.1
Length = 229
Score = 290 bits (743), Expect = 1e-99
Identities = 80/174 (45%), Positives = 108/174 (62%), Gaps = 6/174 (3%)
Query: 5 RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFH 64
P + D+ + + LG+ FEL+ +I P T ENFR CTGE + + Y N +FH
Sbjct: 59 NPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV---NNLPVGYKNTIFH 115
Query: 65 RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFI 124
RV+K FMIQ GDF NG+G SIYG F+DENF++KHD+ LLSMAN G +TNG QFFI
Sbjct: 116 RVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFI 175
Query: 125 TTQPAPHLDGVHVVFGHVVS--GQNVVSHIENLPVD-KMSRPLQDVRVVKCNEL 175
TT+ LDG +VVFG ++ ++ IEN+ V + +P + VV+C EL
Sbjct: 176 TTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa,
KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A*
3bt8_A
Length = 172
Score = 282 bits (723), Expect = 2e-97
Identities = 88/172 (51%), Positives = 108/172 (62%), Gaps = 9/172 (5%)
Query: 4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVF 63
+ + YFDV I PLGRI L+ P+T ENFR LCTGE G G Y + +F
Sbjct: 10 VTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG--------YKDSIF 61
Query: 64 HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
HRV++ FMIQ GDF+ +GTGG+SIYG F DEN +KH LSMAN G +TNGSQFF
Sbjct: 62 HRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFF 120
Query: 124 ITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
ITT P P LDG HVVFG V+ G +VV IE + RP++ V++V EL
Sbjct: 121 ITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin,
endoplasmic reticulum, glycoprot isomerase, rotamase;
1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A*
2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Length = 188
Score = 280 bits (719), Expect = 1e-96
Identities = 89/172 (51%), Positives = 111/172 (64%), Gaps = 8/172 (4%)
Query: 4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVF 63
+ + YFD+ I D +GR++F L+ P T +NF AL TGEKG G Y N F
Sbjct: 14 VTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG--------YKNSKF 65
Query: 64 HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
HRV+K FMIQ GDF+ G+GTGG+SIYG F DENF+LKH P +SMAN GKDTNGSQFF
Sbjct: 66 HRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFF 125
Query: 124 ITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
ITT LDG HVVFG V+ G VV +E+ D +PL+DV + C ++
Sbjct: 126 ITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 177
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase,
RNA-binding, cyclosporin, cyclophilin, beta-barrel;
1.50A {Schistosoma mansoni} PDB: 2ck1_A
Length = 172
Score = 272 bits (699), Expect = 8e-94
Identities = 91/173 (52%), Positives = 112/173 (64%), Gaps = 9/173 (5%)
Query: 4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVF 63
PR +FD+ I + GRIV EL SDI P T ENFRALCTGE+G G Y N F
Sbjct: 9 NLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG--------YHNCCF 60
Query: 64 HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
HRV+ FM Q GDF G+GTGG+SIYG F+DENF+L+H+ +LSMAN G +TNGSQFF
Sbjct: 61 HRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFF 120
Query: 124 ITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
I T LDG HVVFG VV GQNVV +E++ + + V + +C EL+
Sbjct: 121 ICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKS-GKVKEPVIISRCGELI 172
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization,
structural genomics consortium, SGC, alternative
splicing, mRNA processing; 1.61A {Homo sapiens} SCOP:
b.62.1.1 PDB: 3uch_A 1zmf_A
Length = 173
Score = 271 bits (695), Expect = 4e-93
Identities = 85/173 (49%), Positives = 103/173 (59%), Gaps = 9/173 (5%)
Query: 4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVF 63
P+ Y D++I + P GRI L SD+ P+T ENFR LCT EKG G + F
Sbjct: 10 SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG--------FKGSSF 61
Query: 64 HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
HR++ FM Q GDF+ NGTGG+SIYG F+DENF LKH P LLSMAN G +TNGSQFF
Sbjct: 62 HRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFF 121
Query: 124 ITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
+T LDG HVVFG V G +V+ IE +P Q V + C E V
Sbjct: 122 LTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKD-GKPKQKVIIADCGEYV 173
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin D; HET: BMT MLE
CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A*
3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A*
3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A*
2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Length = 165
Score = 270 bits (692), Expect = 9e-93
Identities = 89/173 (51%), Positives = 108/173 (62%), Gaps = 9/173 (5%)
Query: 3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIV 62
+ P Y DV+ + PLGR+V EL +D+ P T ENFRALCTGEKG G Y
Sbjct: 1 MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGST 52
Query: 63 FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
FHRV+ FM Q+GDF+ NGTGG+SIYG F DENF LKH P +LSMAN G +TNGSQF
Sbjct: 53 FHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQF 112
Query: 123 FITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
FI T LDG HVVFGHV+ G +VV IE+ R + + + C +L
Sbjct: 113 FICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKS-GRTSKKIVITDCGQL 164
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase,
isomerase-immunosuppressant compl; HET: BMT; 1.47A
{Moniliophthora perniciosa} PDB: 3o7t_A
Length = 164
Score = 269 bits (691), Expect = 1e-92
Identities = 80/171 (46%), Positives = 107/171 (62%), Gaps = 9/171 (5%)
Query: 5 RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFH 64
+F++ I+D P GRIVF+LY + P T +NFR L TG+ G G Y + +FH
Sbjct: 2 MANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG--------YKDSIFH 53
Query: 65 RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFI 124
RV+ FM+Q GDF+ NGTGG+SIYG F DENF++KH +P LLSMAN G +TNGSQFFI
Sbjct: 54 RVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFI 113
Query: 125 TTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
TT P LDG HVVFG V+ G ++V +E + +++ C +
Sbjct: 114 TTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSAS-GKTNATIKITDCGTV 163
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW,
decode, cytoplasm, rotamase, structural genomics; HET:
PG5; 1.95A {Encephalitozoon cuniculi}
Length = 193
Score = 269 bits (691), Expect = 3e-92
Identities = 81/175 (46%), Positives = 97/175 (55%), Gaps = 9/175 (5%)
Query: 2 KLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNI 61
K YFDV ++ LGRIV +L DI P T +NFR LC KG G Y
Sbjct: 24 KEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG--------YKGS 75
Query: 62 VFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQ 121
FHR++ GFM+Q GD++ NGTGG SIYG F DENFELKH + +LSMAN G TNGSQ
Sbjct: 76 TFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQ 135
Query: 122 FFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDK-MSRPLQDVRVVKCNEL 175
FFIT LD HVVFG VV G +VV I + + + + C L
Sbjct: 136 FFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGVL 190
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic,
inhibito isomerase-isomerase inhibitor complex; HET:
EA4; 2.14A {Homo sapiens}
Length = 184
Score = 265 bits (679), Expect = 1e-90
Identities = 85/174 (48%), Positives = 106/174 (60%), Gaps = 9/174 (5%)
Query: 2 KLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNI 61
++ P +FD+ + PLGR+ FEL++D P T ENFRAL TGEKG G Y
Sbjct: 19 GMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGS 70
Query: 62 VFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQ 121
FHR++ GFM Q GDF+ NGTGG+SIYG FEDENF LKH P +LSMAN G +TNGSQ
Sbjct: 71 CFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQ 130
Query: 122 FFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
FFI T LDG HVVFG V G N+V +E + + + + C +L
Sbjct: 131 FFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRN-GKTSKKITIADCGQL 183
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp
F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus}
SCOP: b.62.1.1
Length = 172
Score = 263 bits (675), Expect = 4e-90
Identities = 83/179 (46%), Positives = 99/179 (55%), Gaps = 16/179 (8%)
Query: 5 RPRCYFDVE-----ISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYL 59
+ +FDVE ++ +GRIVF L+ P T +NFR LC G G Y
Sbjct: 2 MSQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG--------YR 53
Query: 60 NIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNG 119
FHR++ FMIQ GDF+ GNGTGG SIYG F DENF KHD+ +LSMAN G +TNG
Sbjct: 54 ESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNG 113
Query: 120 SQFFITTQPAPHLDGVHVVFGHVV--SGQNVVSHIENLPVDK-MSRPLQDVRVVKCNEL 175
SQFFITT LDG HVVFG V +VV IE L R ++V C EL
Sbjct: 114 SQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain,
structura genomics, structural genomics consortium, SGC,
unknown FUNC; 1.80A {Plasmodium falciparum} SCOP:
b.62.1.1
Length = 160
Score = 234 bits (599), Expect = 1e-78
Identities = 72/156 (46%), Positives = 94/156 (60%), Gaps = 13/156 (8%)
Query: 19 LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
+G I L+ C T +NF N +Y N +FHRV+K FM+Q+GD S
Sbjct: 14 MGDIHISLFYKECKKTVQNFSVHS-----------INGYYNNCIFHRVIKHFMVQTGDPS 62
Query: 79 VGNGTGGESIYGGTFEDENF-ELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHV 137
G+GTGGESI+G FEDE F L H +PF++SMAN G +TNGSQFFITT P P LD H
Sbjct: 63 -GDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHT 121
Query: 138 VFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCN 173
VFG V G +V IE + DK +PL+D++++
Sbjct: 122 VFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIK 157
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel,
disorder-order transition, HOOK-like, mRNA processing,
mRNA splicing, rotamase; NMR {Homo sapiens}
Length = 203
Score = 234 bits (600), Expect = 2e-78
Identities = 69/196 (35%), Positives = 93/196 (47%), Gaps = 21/196 (10%)
Query: 19 LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
+G IV ELY P TC+NF L +G +Y FHR++K FMIQ GD +
Sbjct: 20 MGIIVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHRIIKDFMIQGGDPT 68
Query: 79 VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHV 137
G G GG SIYG FEDE + +LK +L+MAN G DTNGSQFF+T P LDG H
Sbjct: 69 -GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHT 127
Query: 138 VFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSKLKAKEKRKASPTSASSD 197
+FG V G +V+ + + + RP+ DV+++K + S
Sbjct: 128 IFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPS--------GGGGSGGGSGGGSG 179
Query: 198 ESDKEEEEKEEGEQTD 213
+ E
Sbjct: 180 GGSGDGGAFPEIHVAQ 195
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans
isomerization, protein-folding, peptidylprolyl ISO
structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Length = 176
Score = 232 bits (593), Expect = 1e-77
Identities = 76/171 (44%), Positives = 97/171 (56%), Gaps = 14/171 (8%)
Query: 5 RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFH 64
P+ D I +G I +L+ CP T ENF +N +Y FH
Sbjct: 16 GPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHS-----------RNGYYNGHTFH 64
Query: 65 RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFF 123
R++KGFMIQ+GD + G G GGESI+GG FEDE + L+HD P+ LSMAN G +TNGSQFF
Sbjct: 65 RIIKGFMIQTGDPT-GTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFF 123
Query: 124 ITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVD-KMSRPLQDVRVVKCN 173
IT P P LD H VFG V G VV I N+ V+ K +P +DV ++
Sbjct: 124 ITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINIT 174
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1;
isomerase-immunosuppressant complex, immunosuppressant;
HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB:
1xwn_A
Length = 166
Score = 231 bits (592), Expect = 1e-77
Identities = 67/156 (42%), Positives = 89/156 (57%), Gaps = 13/156 (8%)
Query: 19 LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
+G IV ELY P TC+NF L +G +Y FHR++K FMIQ GD +
Sbjct: 20 MGIIVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHRIIKDFMIQGGDPT 68
Query: 79 VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHV 137
G G GG SIYG FEDE + +LK +L+MAN G DTNGSQFF+T P LDG H
Sbjct: 69 -GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHT 127
Query: 138 VFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCN 173
+FG V G +V+ + + + RP+ DV+++K
Sbjct: 128 IFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAY 163
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics
consortium, SGC, isomerase; 2.50A {Plasmodium yoelii}
SCOP: b.62.1.1
Length = 196
Score = 223 bits (571), Expect = 5e-74
Identities = 67/155 (43%), Positives = 88/155 (56%), Gaps = 13/155 (8%)
Query: 19 LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
LG ELY P TC NF LC E G Y N +FHRV+ F+IQ GD +
Sbjct: 47 LGDFEVELYWYHSPKTCLNFYTLC--EMG---------FYDNTIFHRVIPNFVIQGGDPT 95
Query: 79 VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHV 137
G G GG+SIYG FEDE N ELKH +LSM+N G +TN SQFFIT P PHLDG H
Sbjct: 96 -GTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHT 154
Query: 138 VFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKC 172
+F V + +I ++ ++P+ D+++++
Sbjct: 155 IFARVSKNMTCIENIASVQTTATNKPIFDLKILRT 189
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum
cyclophilin isomerase, structural genomics; 2.01A
{Cryptosporidium parvum iowa II} PDB: 2qer_A
Length = 185
Score = 219 bits (559), Expect = 2e-72
Identities = 68/173 (39%), Positives = 98/173 (56%), Gaps = 17/173 (9%)
Query: 5 RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFH 64
R YF G + FEL+ CP C+NF AL + +Y N +FH
Sbjct: 11 RENLYFQGVRIITNYGDLKFELFCSQCPKACKNFLALS-----------ASGYYKNTIFH 59
Query: 65 RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENF-ELKHDEPFLLSMANRGK----DTNG 119
+ +KGF+IQ GD + G G GGESIYG F+DE + ELK+D +LSMA++G +TNG
Sbjct: 60 KNIKGFIIQGGDPT-GTGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNG 118
Query: 120 SQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKC 172
SQFFIT P L+G +V+FG ++ G ++ +EN P DK +P+ ++ +
Sbjct: 119 SQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDI 171
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix,
disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1
PDB: 1xyh_A 2oju_A*
Length = 161
Score = 215 bits (549), Expect = 3e-71
Identities = 69/156 (44%), Positives = 94/156 (60%), Gaps = 14/156 (8%)
Query: 19 LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
+G I E++ + P TCENF ALC + +Y +FHR +KGFM+Q+GD +
Sbjct: 9 VGDIKIEVFCERTPKTCENFLALC-----------ASNYYNGCIFHRNIKGFMVQTGDPT 57
Query: 79 VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHV 137
G G GG SI+G FEDE + LKH+ ++SMAN G +TNGSQFFIT PHLD +
Sbjct: 58 -GTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYT 116
Query: 138 VFGHVVSGQNVVSHIENLPVDKMS-RPLQDVRVVKC 172
VFG V+ G + +E LPV++ + RPL DV +
Sbjct: 117 VFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDI 152
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;
isomerase-immunosuppressant complex, immunosuppressant,
cyclophilin, structural G structural genomics
consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Length = 201
Score = 212 bits (543), Expect = 9e-70
Identities = 61/203 (30%), Positives = 96/203 (47%), Gaps = 28/203 (13%)
Query: 19 LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
G + EL++D+ P C++F LC + ++ + +FHR ++ FMIQ G
Sbjct: 15 QGSLNIELHADMAPRACDSFLRLCAVK-----------YFDDTIFHRCIRNFMIQGGRAE 63
Query: 79 V----GNGTGGESIY-------GGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITT 126
+ +S G FEDE + L H +LSMAN GK +N S+FFIT
Sbjct: 64 LRQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITF 123
Query: 127 QPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSKLKAKEK 186
+ HL+ H +FG VV G +V+ E L DK +PL+ +V + V K+ + K
Sbjct: 124 KSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEEII--VFKNPFEDARK 181
Query: 187 RKASPTSASSDESDKEEEEKEEG 209
+E +KE+++ E
Sbjct: 182 EM---EDEKREEEEKEKKKLENA 201
>2hq6_A Serologically defined colon cancer antigen 10; protein folding,
peptidyl-prolyl CIS-trans isomerase, struct genomics;
1.75A {Homo sapiens}
Length = 185
Score = 211 bits (539), Expect = 2e-69
Identities = 58/156 (37%), Positives = 79/156 (50%), Gaps = 14/156 (8%)
Query: 19 LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
G I EL+S P C NF LC +Y N +FHRVV GF++Q GD +
Sbjct: 33 AGDIDIELWSKEAPKACRNFIQLC-----------LEAYYDNTIFHRVVPGFIVQGGDPT 81
Query: 79 VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHV 137
G G+GGESIYG F+DE + L+ + L++MAN G NGSQFF T A L+ H
Sbjct: 82 -GTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHT 140
Query: 138 VFGHVVS-GQNVVSHIENLPVDKMSRPLQDVRVVKC 172
+FG V + + + +D RP ++ C
Sbjct: 141 IFGKVTGDTVYNMLRLSEVDIDDDERPHNPHKIKSC 176
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans
isomerization, peptidylprolyl isomerase, protein-
folding, structural genomics consortium; 1.65A {Homo
sapiens} SCOP: b.62.1.1
Length = 197
Score = 208 bits (531), Expect = 6e-68
Identities = 68/182 (37%), Positives = 99/182 (54%), Gaps = 21/182 (11%)
Query: 19 LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
G + EL+ D+ P TCENF LC +K +Y +FHR ++ F+IQ GD +
Sbjct: 28 KGDLNLELHCDLTPKTCENFIRLC--KKH---------YYDGTIFHRSIRNFVIQGGDPT 76
Query: 79 VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHV 137
G GTGGES +G F+DE L H +LSMAN G ++N SQFFIT + +LD H
Sbjct: 77 -GTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHT 135
Query: 138 VFGHVVSGQNVVSHIENLPVD-KMSRPLQDVRVVKC-------NELVLKSKLKAKEKRKA 189
+FG VV G +V++ +EN+ D K RP +++R+ E + + K + K
Sbjct: 136 IFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVFVDPYEEADAQIAQERKTQLKV 195
Query: 190 SP 191
+P
Sbjct: 196 AP 197
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009,
rotamase, structural proteomics in europe, spine; 2.6A
{Mycobacterium tuberculosis} SCOP: b.62.1.1
Length = 191
Score = 201 bits (512), Expect = 3e-65
Identities = 65/160 (40%), Positives = 78/160 (48%), Gaps = 11/160 (6%)
Query: 19 LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLH----YLNIVFHRVVKGFMIQS 74
G I L+ + P T NF L G K Y VFHRV++GFMIQ
Sbjct: 32 RGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQG 91
Query: 75 GDFSVGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLD 133
GD G G GG G F DE + EL+ D+P+LL+MAN G TNGSQFFIT PHL+
Sbjct: 92 GD-PTGTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLN 147
Query: 134 GVHVVFGHVVS--GQNVVSHIENLPVDKMSRPLQDVRVVK 171
H +FG V+ Q VV I D RP V +
Sbjct: 148 RRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIES 187
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural
genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Length = 232
Score = 189 bits (481), Expect = 5e-60
Identities = 61/221 (27%), Positives = 94/221 (42%), Gaps = 37/221 (16%)
Query: 19 LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
LG + EL++ CP+ C NF LC +Y+N +FHRVVK F++Q GD +
Sbjct: 30 LGDLDVELWARECPLACRNFVQLC-----------LEGYYVNTIFHRVVKDFIVQGGDPT 78
Query: 79 VGNGTGG--ESIYGGTFEDE-NFELKHDEPFLLSMANRGKD--------------TNGSQ 121
G G GG + G F+ E + LK L+ +AN G+ TNG+Q
Sbjct: 79 -GTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQ 137
Query: 122 FFITTQPAPHLDGVHVVFGHVVS-GQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSK 180
FFIT A L+ + +FG V + +L V K RP+ + + VL +
Sbjct: 138 FFITLARADVLNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPMTPPFIKSVD--VLWNP 195
Query: 181 LKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKR 221
+ R+ + +++E K E + R
Sbjct: 196 FEDLVPRRLPDAPPA-----QKDERKRARAAGGRTTEGRAR 231
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics
center for infectious disease; 1.65A {Burkholderia
pseudomallei} PDB: 3t1u_A*
Length = 167
Score = 139 bits (352), Expect = 2e-41
Identities = 49/167 (29%), Positives = 66/167 (39%), Gaps = 29/167 (17%)
Query: 19 LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
G I EL P T ENF +KG HY +FHRV+ GFMIQ G F
Sbjct: 12 HGVIKLELDEAKAPKTVENFLNYV--KKG---------HYDGTIFHRVINGFMIQGGGFE 60
Query: 79 VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMA-NRGKDTNGSQFFITTQPAPHLDGV- 135
+ +E N LK+D ++MA + +QFFI L+
Sbjct: 61 -PGLKQKPT--DAPIANEANNGLKNDTYT-IAMARTNDPHSATAQFFINVNDNEFLNHSS 116
Query: 136 -------HVVFGHVVSGQNVVSHIENLPVDK----MSRPLQDVRVVK 171
+ VFG VV GQ++V I+ + P DV + K
Sbjct: 117 PTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVIEK 163
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex;
HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB:
2nul_A 2rs4_A
Length = 164
Score = 135 bits (342), Expect = 6e-40
Identities = 45/167 (26%), Positives = 67/167 (40%), Gaps = 29/167 (17%)
Query: 19 LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
G IV + + D P T +NF C +G Y N +FHRV+ GFMIQ G F
Sbjct: 8 HGDIVIKTFDDKAPETVKNFLDYC--REG---------FYNNTIFHRVINGFMIQGGGF- 55
Query: 79 VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMA-NRGKDTNGSQFFITTQPAPHLDGV- 135
+ ++E N LK+ L+MA + + +QFFI L+
Sbjct: 56 --EPGMKQKATKEPIKNEANNGLKNTRGT-LAMARTQAPHSATAQFFINVVDNDFLNFSG 112
Query: 136 -------HVVFGHVVSGQNVVSHIENLPVDK----MSRPLQDVRVVK 171
+ VF VV G + V I+ + + P +DV +
Sbjct: 113 ESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIES 159
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex;
HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB:
1j2a_A* 1vai_A* 1clh_A
Length = 166
Score = 133 bits (338), Expect = 2e-39
Identities = 45/164 (27%), Positives = 66/164 (40%), Gaps = 26/164 (15%)
Query: 19 LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
G I EL P++ +NF G Y N FHRV+ GFMIQ G F+
Sbjct: 13 AGNIELELDKQKAPVSVQNFVDYV--NSG---------FYNNTTFHRVIPGFMIQGGGFT 61
Query: 79 VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMA-NRGKDTNGSQFFITTQPAPHLDGV- 135
+ ++E + L++ ++MA KD+ SQFFI LD
Sbjct: 62 -EQMQQKKP--NPPIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQ 117
Query: 136 ----HVVFGHVVSGQNVVSHIENLPVDKMS----RPLQDVRVVK 171
+ VFG VV G +V I +P + P + V ++
Sbjct: 118 RDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILS 161
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin,
peptidyl prolyl isomerase, ppiase, TLP,; 2.39A
{Arabidopsis thaliana}
Length = 369
Score = 112 bits (282), Expect = 3e-29
Identities = 33/175 (18%), Positives = 56/175 (32%), Gaps = 46/175 (26%)
Query: 13 EISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMI 72
+ +I L P+T NF L E+ Y + R GF++
Sbjct: 181 DNPNIEDCVFRIVLDGYNAPVTAGNFVDLV--ERHF---------YDGMEIQRS-DGFVV 228
Query: 73 QSGDFSVGNGTG--------------------GESIYGGTFED-----ENFELKHDEPFL 107
Q+GD YG T E+ + +
Sbjct: 229 QTGDPEGPAEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGT 288
Query: 108 LSMANRGK--DTNGSQFFI-------TTQPAPHLDGVHVVFGHVVSGQNVVSHIE 153
++MA D+ SQ F T + LDG + VFG+V ++ ++ ++
Sbjct: 289 MAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLK 343
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 47.5 bits (112), Expect = 7e-07
Identities = 11/70 (15%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 201 KEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKK 260
+ + +E E +E ++++ + D K + ++ E+ +K+ E + E + K
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE-QVEKN 134
Query: 261 HKKDKKKRKK 270
++ K
Sbjct: 135 KINNRIADKA 144
Score = 42.5 bits (99), Expect = 4e-05
Identities = 12/74 (16%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 194 ASSDESDKE--------EEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKK--SKYEEEEEK 243
A +D +E EE+++ ++ D ++ ++ KK ++ + E+ EK
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELD-AASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Query: 244 EEGEQTDSEKEAKK 257
+ ++K +
Sbjct: 134 NKINNRIADKAFYQ 147
Score = 40.9 bits (95), Expect = 1e-04
Identities = 13/67 (19%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 210 EQTDSEKEAKK--RKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSE---KEAKKRKKHKKD 264
++ E E+ + R++ +K ++ SK E+E +E+ ++ E +++++ +K+K +
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 137
Query: 265 KKKRKKK 271
+ K
Sbjct: 138 NRIADKA 144
Score = 38.2 bits (88), Expect = 0.001
Identities = 9/73 (12%), Positives = 32/73 (43%), Gaps = 11/73 (15%)
Query: 182 KAKEKRKASPTSASSDESDKEEEEKEEGEQT--DSEKEAKKRKKHKKDKKKKKKKSKYEE 239
K +E+++ + + K ++ ++K+ ++ + + ++ +K K +
Sbjct: 89 KWREEQRK-------RLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN--R 139
Query: 240 EEEKEEGEQTDSE 252
+K +Q D++
Sbjct: 140 IADKAFYQQPDAD 152
Score = 29.7 bits (66), Expect = 0.76
Identities = 4/35 (11%), Positives = 15/35 (42%)
Query: 238 EEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
+ + +E E +E ++++ + D + +
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQ 110
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 43.4 bits (102), Expect = 5e-05
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 18/100 (18%)
Query: 191 PTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEE--------- 241
S S D + +++EEG + +E+ AKK+++ KK K + E ++
Sbjct: 8 AASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEV 67
Query: 242 ---------EKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
E +E ++ D + + K KKK+KKK
Sbjct: 68 ARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKR 107
Score = 38.0 bits (88), Expect = 0.003
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 15/96 (15%)
Query: 177 LKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSK 236
K + K+K+ P++A E DKE + E+ A + K
Sbjct: 34 AAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDK-------------- 79
Query: 237 YEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
E +E+ E+G+ KK+KK KK + + +
Sbjct: 80 -ERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTD 114
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 40.5 bits (95), Expect = 5e-04
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 3/98 (3%)
Query: 177 LKSKLKAKEKRKASPTSA-SSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKD--KKKKKK 233
L K+ E ++ T SD E+E T+ ++ + + + +
Sbjct: 947 LLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006
Query: 234 KSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
K EE +K + E E K++ K +K+ +
Sbjct: 1007 KKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNR 1044
Score = 38.9 bits (91), Expect = 0.002
Identities = 13/107 (12%), Positives = 37/107 (34%), Gaps = 1/107 (0%)
Query: 164 LQDVRVVKCNELVLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKK 223
L+ + ++C + +K + K+ + + S + E + + E K K
Sbjct: 887 LKAIVYLQCCYRRMMAKRELKKLKIEA-RSVERYKKLHIGLENKIMQLQRKIDEQNKEYK 945
Query: 224 HKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKK 270
+K + + E E+ + E + + + +++
Sbjct: 946 SLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEE 992
Score = 38.6 bits (90), Expect = 0.002
Identities = 12/72 (16%), Positives = 28/72 (38%)
Query: 200 DKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRK 259
D++ +E + + + E + +K + ++ EEE + ++E K +
Sbjct: 938 DEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLR 997
Query: 260 KHKKDKKKRKKK 271
K + KK
Sbjct: 998 KELHQTQTEKKT 1009
Score = 38.2 bits (89), Expect = 0.002
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 2/98 (2%)
Query: 177 LKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDS-EKEAKKRKKHKKDKKKKKKKS 235
+ + S EEE K + S ++E K +K + +KK
Sbjct: 951 MNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTI 1010
Query: 236 KYEEEEEKEEGEQTDSE-KEAKKRKKHKKDKKKRKKKS 272
+ ++ K E EQ SE KE K +K++ R+
Sbjct: 1011 EEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048
Score = 38.2 bits (89), Expect = 0.002
Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 3/104 (2%)
Query: 171 KCNELVLKSKLKAKEKRKASPTSASSDE---SDKEEEEKEEGEQTDSEKEAKKRKKHKKD 227
K V + ++ +E + A+ S E ++E + + E+ E+ A K K +
Sbjct: 964 KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQ 1023
Query: 228 KKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
+ K+ + EKEE + ++ + + +K + K+
Sbjct: 1024 LVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQ 1067
Score = 37.8 bits (88), Expect = 0.004
Identities = 15/100 (15%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
Query: 177 LKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSK 236
KL++ +R + + +++ +EE + E + +K ++ K K +
Sbjct: 961 ETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020
Query: 237 YEE-----EEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
E+ +E+ + E + + K+ + +KK
Sbjct: 1021 TEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKK 1060
Score = 37.4 bits (87), Expect = 0.005
Identities = 13/106 (12%), Positives = 40/106 (37%), Gaps = 14/106 (13%)
Query: 177 LKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKK------------- 223
+ K+ ++ + S E++K + E ++ E + +
Sbjct: 940 QNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE 999
Query: 224 -HKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKR 268
H+ +KK + ++ + + E ++ +++ K K++ +R
Sbjct: 1000 LHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRR 1045
Score = 37.4 bits (87), Expect = 0.005
Identities = 10/99 (10%), Positives = 32/99 (32%), Gaps = 6/99 (6%)
Query: 173 NELVLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKK 232
+ L+ + ++ + E E ++ E K + +K ++ K
Sbjct: 889 AIVYLQCCYRRMMAKREL------KKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNK 942
Query: 233 KKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
+ E+ E + ++ + + + ++ K
Sbjct: 943 EYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKN 981
Score = 36.6 bits (85), Expect = 0.007
Identities = 11/99 (11%), Positives = 31/99 (31%), Gaps = 3/99 (3%)
Query: 177 LKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSK 236
+++ KA + E ++ + E K+ + K + + K
Sbjct: 877 WLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRK 936
Query: 237 YEEEEE---KEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
+E+ + + + E + + +R + S
Sbjct: 937 IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMS 975
Score = 34.7 bits (80), Expect = 0.028
Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 3/99 (3%)
Query: 177 LKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSK 236
L L+ K + + E E+ E T S + K R ++ + +++
Sbjct: 922 LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKN 981
Query: 237 YEEEEEKEEGE---QTDSEKEAKKRKKHKKDKKKRKKKS 272
+ E + + KK ++ + K
Sbjct: 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020
Score = 33.5 bits (77), Expect = 0.065
Identities = 14/95 (14%), Positives = 31/95 (32%)
Query: 178 KSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKY 237
KS + K R + + +++E KK K + ++ KK
Sbjct: 866 KSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIG 925
Query: 238 EEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
E + + + D + + K K + + +
Sbjct: 926 LENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYST 960
Score = 31.2 bits (71), Expect = 0.37
Identities = 16/78 (20%), Positives = 28/78 (35%)
Query: 177 LKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSK 236
L K+ + + E KE+ +EKE R+ H + K+ + K
Sbjct: 1000 LHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEK 1059
Query: 237 YEEEEEKEEGEQTDSEKE 254
EE K+ + E+
Sbjct: 1060 KLVEETKQLELDLNDERL 1077
Score = 31.2 bits (71), Expect = 0.40
Identities = 8/71 (11%), Positives = 29/71 (40%)
Query: 177 LKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSK 236
++ + S +++ + EKEE + ++ + + +K ++ K+ +
Sbjct: 1010 IEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLE 1069
Query: 237 YEEEEEKEEGE 247
+ +E+ +
Sbjct: 1070 LDLNDERLRYQ 1080
Score = 27.8 bits (62), Expect = 5.2
Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 6/96 (6%)
Query: 178 KSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKY 237
++K + + S + + R+ K + KK K
Sbjct: 855 RNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLK---- 910
Query: 238 EEEEEKEEGEQTDSEKEAKKRKKHKK--DKKKRKKK 271
E E ++ E K + +K ++ K K
Sbjct: 911 IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKS 946
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 5e-04
Identities = 58/297 (19%), Positives = 84/297 (28%), Gaps = 113/297 (38%)
Query: 18 PLGRIVF--------ELYS-DICPITCENFRALC---TGEKGIGKTTGKNLHYLNIVFHR 65
+ V+ + Y I I N L GEKG K +N Y ++F
Sbjct: 1640 KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG--KRIREN--YSAMIFET 1695
Query: 66 VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
+V G + F N E TF ++ L T QF
Sbjct: 1696 IVDGKLKTEKIFKEIN----EHSTSYTFR-------SEKGLL-------SAT---QF--- 1731
Query: 126 TQPAPHL-------------DGV---HVVF-GH-------VVSGQNVVSHIENLPVDKMS 161
TQPA L G+ F GH + S +V+S IE+L
Sbjct: 1732 TQPA--LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMS-IESL------ 1782
Query: 162 RPLQDVRVVK-----CNELVLKSKLKAKEKRKAS--PTS--ASSDESDKEEEEKEEGEQT 212
V VV V + +L + P AS + + + G++T
Sbjct: 1783 -----VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 213 DS------------------EKEA--------KKRKKHKKDKKKKKKKSKYEEEEEK 243
+ A K K D + +K EE E
Sbjct: 1838 GWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 38.9 bits (90), Expect = 0.001
Identities = 46/256 (17%), Positives = 80/256 (31%), Gaps = 82/256 (32%)
Query: 9 YFD-VEISDIPL-GRIVFELYSDICPI---TCENFRALCTGEKGIGK-----------TT 52
Y + IS PL G I Y + T R+ G G + +
Sbjct: 230 YLLSIPIS-CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 53 GKNLH-----YLNIVFH---RVVKGF--------MIQSGDFSVGNGTGGES----IYGGT 92
++ + ++F R + + +++ S+ N G S I T
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED---SLENNEGVPSPMLSISNLT 345
Query: 93 FED-------ENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVF--GHVV 143
E N L + +S+ NG++ + + P L G+++
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISL------VNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 144 SG--QNVVSH------IEN--LPVDKMSRP-----LQDVRVVKCNELVLKSKLKAKEKRK 188
SG Q+ + N LPV + P L ++L+ K +K
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPV---ASPFHSHLLVPA-----SDLINKDLVKNNVSFN 451
Query: 189 AS----PTSASSDESD 200
A P + D SD
Sbjct: 452 AKDIQIPVYDTFDGSD 467
Score = 31.2 bits (70), Expect = 0.40
Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 38/97 (39%)
Query: 20 GRIVFELYSDIC--PI---TCENFRA---LCTG---EKGIGKTTGKNLHYLNIVFHRVVK 68
G I + I P+ T F+A L G G+G T +N
Sbjct: 473 GSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNK------------ 520
Query: 69 GFMIQSGDFSVGNGTGGESIYGGTFE---DENFELKH 102
+GTG I GT + D+++ K
Sbjct: 521 ------------DGTGVRVIVAGTLDINPDDDYGFKQ 545
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 39.0 bits (91), Expect = 0.001
Identities = 14/90 (15%), Positives = 34/90 (37%)
Query: 177 LKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSK 236
K+K E ++ + + + +E + ++ K K K K +S
Sbjct: 981 ADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM 1040
Query: 237 YEEEEEKEEGEQTDSEKEAKKRKKHKKDKK 266
E E + + E+ ++ K ++K + +
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESS 1070
Score = 36.0 bits (83), Expect = 0.011
Identities = 17/105 (16%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 177 LKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSK 236
L+ +L+ +E + K ++ +++ + + +++ +++ +
Sbjct: 960 LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN 1019
Query: 237 YEEEEEKE----------EGEQTDSEKEAKKRKKHKKDKKKRKKK 271
EEEEK E ++ E KK +K +++ +K K+K
Sbjct: 1020 LAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK 1064
Score = 36.0 bits (83), Expect = 0.014
Identities = 20/108 (18%), Positives = 41/108 (37%)
Query: 157 VDKMSRPLQDVRVVKCNELVLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEK 216
+++ Q +++ K K++ + + E EE + +E+
Sbjct: 964 LEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE 1023
Query: 217 EAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKD 264
E K + K K + S+ E +KEE + + EK +K + D
Sbjct: 1024 EEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSD 1071
Score = 35.6 bits (82), Expect = 0.015
Identities = 23/116 (19%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 159 KMSRPLQDVRVVKCNELVLKSKLKAKEKRKASPTSASSDESDKEEE---EKEEGEQTDSE 215
K+ + D+ +++ L + K E+R + T+ ++E +K + K + E SE
Sbjct: 984 KIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISE 1043
Query: 216 KEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
E + +K+ K ++ +K K K E E + + + + + K K++ +
Sbjct: 1044 LEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQA 1099
Score = 32.9 bits (75), Expect = 0.11
Identities = 17/88 (19%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 177 LKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSK 236
++++++ +E+R + E K +++ + E+ E+EA ++K + K K
Sbjct: 932 MEARIEEEEER----SQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKK 987
Query: 237 YEEEEEKEEGEQTDSEKEAKKRKKHKKD 264
E++ E + KE K ++ D
Sbjct: 988 MEDDILIMEDQNNKLTKERKLLEERVSD 1015
Score = 32.5 bits (74), Expect = 0.18
Identities = 17/117 (14%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Query: 158 DKMSRPLQDVRVVKCNELVLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKE 217
++M ++++ K + +++LK E++ + +K + E E + + +
Sbjct: 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRV 916
Query: 218 AKKRKKHKKDKKKKKKKSKYEEEEE---KEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
KK + ++ + +++ EEEEE + + E+ +++ ++ ++++ ++K
Sbjct: 917 RLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973
Score = 32.1 bits (73), Expect = 0.21
Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 177 LKSKLKAKEKRKASPTSASSDESD-------KEEEEKEEGEQTDSEKEAKKRKKHKKDKK 229
LK++L KE+ + + DE+ K E + + E++K ++K +K+
Sbjct: 1086 LKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQ 1145
Query: 230 KKKKKSKYEE--EEEKEEGEQTDSEKEA-KKRKKHKKDK 265
K+ + E E ++ + T +++E K DK
Sbjct: 1146 KRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
Score = 31.7 bits (72), Expect = 0.30
Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 5/101 (4%)
Query: 177 LKSKLKAKEKRKASPTSASSD-ESDKEEEE----KEEGEQTDSEKEAKKRKKHKKDKKKK 231
+ + + + K D E EEEE K + E+ ++ + KK + + +
Sbjct: 939 EEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQ 998
Query: 232 KKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
K E + +E + ++ K K K K +S
Sbjct: 999 NNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHES 1039
Score = 31.3 bits (71), Expect = 0.35
Identities = 18/108 (16%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
Query: 171 KCNELVLKSKLKAKEKRKASPTSASSDESDKEEEE------KEEGEQTDSEKEAKKRKKH 224
K + + K K K + + + ++ E + +EE + + E + +K+
Sbjct: 1053 KSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKN 1112
Query: 225 KKDKKKKKKKSKYEE-EEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
KK ++ +S + +E+ E E+ K K+++ ++ + K +
Sbjct: 1113 NALKKIRELESHISDLQEDLES-EKAARNKAEKQKRDLSEELEALKTE 1159
Score = 30.6 bits (69), Expect = 0.58
Identities = 16/99 (16%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Query: 178 KSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKD-----KKKKK 232
+ K K K K S S+ + ++E++ + + EK +K + D + +
Sbjct: 1024 EEKAKNLTKLKNKHESMISELEVRLKKEEKS--RQELEKIKRKLEGESSDLHEQIAELQA 1081
Query: 233 KKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
+ ++ + + K+E E + + K + K+ ++
Sbjct: 1082 QIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRE 1120
Score = 29.4 bits (66), Expect = 1.6
Identities = 17/88 (19%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 177 LKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSK 236
L+ +LK +EK + K E E + + +E +A+ + + KK+++
Sbjct: 1044 LEVRLKKEEKSRQE----LEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQA 1099
Query: 237 YEEEEEKEEGEQTDSEKEAKKRKKHKKD 264
E E ++ ++ K+ ++ + H D
Sbjct: 1100 ALARLEDETSQKNNALKKIRELESHISD 1127
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 35.9 bits (83), Expect = 0.009
Identities = 7/74 (9%), Positives = 22/74 (29%), Gaps = 8/74 (10%)
Query: 189 ASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQ 248
P + + + + + G E + + + EE K E +
Sbjct: 172 LPPRLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASL--------EEVKAEASE 223
Query: 249 TDSEKEAKKRKKHK 262
++ +++ +
Sbjct: 224 DNAGTDSEDNSDAQ 237
Score = 33.5 bits (77), Expect = 0.042
Identities = 6/61 (9%), Positives = 20/61 (32%)
Query: 187 RKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEG 246
R + + ++ + GE ++ EA ++ K + + ++
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNS 234
Query: 247 E 247
+
Sbjct: 235 D 235
Score = 29.7 bits (67), Expect = 0.78
Identities = 6/43 (13%), Positives = 15/43 (34%)
Query: 183 AKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHK 225
A + A + EE K E + ++ +++ +
Sbjct: 195 AAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDAQ 237
>2o8g_I IPP-2, protein phosphatase inhibitor 2; hydrolase-inhibitor comple;
2.50A {Mus musculus} PDB: 2o8a_I
Length = 206
Score = 34.8 bits (79), Expect = 0.016
Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 176 VLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKH---KKDKKKKK 232
+L KL A E + + + S +E+ + E+ + KRK H + K +
Sbjct: 100 ILAKKLAAAEGSEPKYRTREQESSGEEDNDLSPEEREKKRQFEMKRKLHYNEGLNIKLAR 159
Query: 233 KKSKYEEEEEKEEGEQTDSEKEAKK 257
+ + ++ E+ E ++
Sbjct: 160 QLISKDLHDDDEDEEMAETADGDSM 184
Score = 27.9 bits (61), Expect = 3.3
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 196 SDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKE- 254
+ + + E E + AKK + + K + + + EE + + EK+
Sbjct: 80 IGDDEDAYSDSEGNEVMTPDILAKKLAAAEGSEPKYRTREQESSGEEDNDLSPEEREKKR 139
Query: 255 --AKKRKKH 261
KRK H
Sbjct: 140 QFEMKRKLH 148
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 34.9 bits (81), Expect = 0.016
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 197 DESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEE 241
+ ++EE KEE E +D E ++ ++ KK K KK +K+ ++ E
Sbjct: 223 EPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWEL 267
Score = 34.5 bits (80), Expect = 0.024
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 197 DESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEE 242
E EEEE + E+ DS+ EA ++ ++ K K KK K + E
Sbjct: 221 VEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWE 266
Score = 34.1 bits (79), Expect = 0.033
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 226 KDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
K + ++ EEE KEE E +D E ++ ++ KK K K+ +K+
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 26.8 bits (60), Expect = 8.0
Identities = 7/39 (17%), Positives = 18/39 (46%)
Query: 205 EKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEK 243
K E + E+E +++ + + + + EE++ K
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPK 254
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 35.2 bits (80), Expect = 0.019
Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 1/91 (1%)
Query: 171 KCNELVLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKK 230
+ N L L+ K + ++E K E+ + +K + KK
Sbjct: 284 RGNTL-LQCLEKEFNAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKK 342
Query: 231 KKKKSKYEEEEEKEEGEQTDSEKEAKKRKKH 261
K + E+ E+ + H
Sbjct: 343 AKIEDTSNVGTEQLVAEKIPENETTHHHHHH 373
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase;
ssgcid, seattle structural genomics center for in
disease; HET: FK5; 1.50A {Burkholderia pseudomallei}
PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A*
1euv_B 3v60_A 3v61_A 3v62_A*
Length = 209
Score = 34.4 bits (79), Expect = 0.019
Identities = 9/99 (9%), Positives = 24/99 (24%), Gaps = 5/99 (5%)
Query: 116 DTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
+ T DG +F + + + + + + +R +
Sbjct: 11 EVKPEVKPETHINLKVSDGSSEIFFKIKKTT-PLRRLMEAFAKRQGKEMDSLRFLY---- 65
Query: 176 VLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDS 214
+ E+ +E+ T+S
Sbjct: 66 DGIRIQADQTPEDLDMEDNDIIEAHREQIGGSTVVTTES 104
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 34.3 bits (78), Expect = 0.033
Identities = 21/93 (22%), Positives = 41/93 (44%)
Query: 174 ELVLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKK 233
EL + KL+ + P S + E ++ E +KE + R+ + K+K+
Sbjct: 296 ELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEA 355
Query: 234 KSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKK 266
+ K E+E E+ ++ + +K+K K K
Sbjct: 356 ELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKS 388
Score = 32.0 bits (72), Expect = 0.19
Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 3/116 (2%)
Query: 157 VDKMSRPLQDVRVVKCNELVLKSKLKAKE---KRKASPTSASSDESDKEEEEKEEGEQTD 213
D S+P + +L+ KE ++ + KE E++ +
Sbjct: 311 TDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDR 370
Query: 214 SEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRK 269
+K + KK +DKKK ++ K E S+ + K K++K
Sbjct: 371 LKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDKEKK 426
Score = 31.6 bits (71), Expect = 0.27
Identities = 13/86 (15%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 177 LKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKK-KKKKS 235
++ + K K + + E ++ + ++ Q + +K K+K + K++K+
Sbjct: 342 MRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKT 401
Query: 236 KYEEEEEKEEGEQTDSEKEAKKRKKH 261
E + + + K KK+
Sbjct: 402 AAELLQSQGSQAGGSQTLKRDKEKKN 427
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning,
protein-DNA complex, heilx-turn- helix motif,
transcription factor; HET: BRU; 2.20A {Escherichia coli}
SCOP: a.4.14.1
Length = 178
Score = 33.3 bits (76), Expect = 0.037
Identities = 10/78 (12%), Positives = 28/78 (35%)
Query: 194 ASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEK 253
++ + EE E + T + + +K + + + + + E+
Sbjct: 101 VTAFKKRPEEVEAWLDDDTQEITRGTVKLLREFLDEKGRDPNTVDAFNGQTDAERDAEAG 160
Query: 254 EAKKRKKHKKDKKKRKKK 271
+ + + +D K K+K
Sbjct: 161 DGQDGEDGDQDGKDAKEK 178
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 32.8 bits (74), Expect = 0.060
Identities = 13/90 (14%), Positives = 35/90 (38%)
Query: 182 KAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEE 241
+K+K + + EE + D+ + + +K ++ K+KK ++
Sbjct: 68 DIAQKKKKRNVTVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRA 127
Query: 242 EKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
+++ + + + KK K+ + K
Sbjct: 128 DRKLQGKDVKAAKKAETKKTKQPVGAKGGK 157
Score = 28.2 bits (62), Expect = 1.9
Identities = 15/86 (17%), Positives = 29/86 (33%)
Query: 178 KSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKY 237
K K R S K + + + + K+KK +KK+ +
Sbjct: 73 KKKRNVTVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQ 132
Query: 238 EEEEEKEEGEQTDSEKEAKKRKKHKK 263
++ + + +T K+ K KK
Sbjct: 133 GKDVKAAKKAETKKTKQPVGAKGGKK 158
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 33.6 bits (76), Expect = 0.061
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 180 KLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEE 239
K+K E E K ++ K+ + E K+ + K+ ++K+ ++E+
Sbjct: 330 KMKKMEMEMEQVFEMKVKE--KVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFED 387
Query: 240 EEEKEEGEQTDSEKEAKKRKKHKKDKKKR 268
E+ E +Q E++ R K KK +
Sbjct: 388 EKANWEAQQRILEQQNSSRTLEKNKKKGK 416
Score = 32.1 bits (72), Expect = 0.17
Identities = 17/90 (18%), Positives = 35/90 (38%)
Query: 177 LKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSK 236
L + + + + EEE+ E + E + + + K+K +K K
Sbjct: 295 LAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLK 354
Query: 237 YEEEEEKEEGEQTDSEKEAKKRKKHKKDKK 266
E E + EQ EA+ ++ +K ++
Sbjct: 355 DSEAELQRRHEQMKKNLEAQHKELEEKRRQ 384
Score = 28.6 bits (63), Expect = 2.5
Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 14/133 (10%)
Query: 151 HIENLPVDKMSRPLQDVRVVKCNELVLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGE 210
H EN K++ + N+ L A+ + + A + E E ++ E
Sbjct: 286 HYENYRSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKK--MEMEMEQVFE 343
Query: 211 QTDSEKEAK-KRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKK------ 263
EK K K + + ++ ++ K E + ++ E ++ E E + ++
Sbjct: 344 MKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQN 403
Query: 264 -----DKKKRKKK 271
+K K+K K
Sbjct: 404 SSRTLEKNKKKGK 416
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 33.0 bits (74), Expect = 0.066
Identities = 13/83 (15%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 189 ASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQ 248
A+ + + + +E E +E ++++ + D K + ++ E+ +K+ E
Sbjct: 79 ANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEW 138
Query: 249 TDSEKEAKKRKKHKKDKKKRKKK 271
+ E + +K+K + + K
Sbjct: 139 NQRQSE--QVEKNKINNRIADKA 159
Score = 31.4 bits (70), Expect = 0.24
Identities = 12/77 (15%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 190 SPTSASSDESDKEEEEKEEGEQTDSEKEA--KKRKKHKKDKKKKKKKSKYEEEEEKEEGE 247
+ + E + + +EE + E +A K ++ ++K KK + + + E+ E
Sbjct: 90 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 149
Query: 248 QTDSEKEAKKRKKHKKD 264
+ ++ K +
Sbjct: 150 KINNRIADKAFYQQPDA 166
Score = 30.7 bits (68), Expect = 0.38
Identities = 5/54 (9%), Positives = 22/54 (40%)
Query: 199 SDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSE 252
+ + K ++ + + + +++ ++ +K +K +Q D++
Sbjct: 114 QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 167
Score = 29.5 bits (65), Expect = 1.00
Identities = 6/84 (7%), Positives = 32/84 (38%)
Query: 189 ASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQ 248
+ + + + +E + +K +++++K+ ++ + ++E +
Sbjct: 70 TVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWRE 129
Query: 249 TDSEKEAKKRKKHKKDKKKRKKKS 272
+ + ++ + +K K +
Sbjct: 130 KAKKDLEEWNQRQSEQVEKNKINN 153
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 32.3 bits (73), Expect = 0.080
Identities = 11/87 (12%), Positives = 26/87 (29%)
Query: 182 KAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEE 241
+ ++KR + + E +R++ + K+ KK + ++
Sbjct: 66 EIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKT 125
Query: 242 EKEEGEQTDSEKEAKKRKKHKKDKKKR 268
+ +K K K R
Sbjct: 126 AMAAAKAPTKAAPKQKIVKPVKVSAPR 152
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 32.5 bits (73), Expect = 0.11
Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 6/121 (4%)
Query: 154 NLPVDKMSRPLQDVRVVKCNELVLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTD 213
P K+ R + +K ++LK AK R+ + + + + ++ E
Sbjct: 303 RAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEAKS 362
Query: 214 SEKEAKKRKKHKKDKKKK--KKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
EK +K +K KK KK K + + ++K A +K +K +KK
Sbjct: 363 EEKGVPGKKPRRKKGKKTVGVKKPK----KPVVGKKAAATKKPAADKKPAEKKPTTEEKK 418
Query: 272 S 272
Sbjct: 419 P 419
Score = 29.1 bits (64), Expect = 1.5
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 176 VLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEK-EAKKRKKHKKDKKKKKKK 234
+L+ K + + + + +K K+ + + KK KK KK K
Sbjct: 340 ILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATK 399
Query: 235 SKYEEEEEKEEGEQTDSEKEA 255
+++ E+ T+ +K A
Sbjct: 400 KPAADKKPAEKKPTTEEKKPA 420
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 32.4 bits (73), Expect = 0.16
Identities = 17/126 (13%), Positives = 40/126 (31%), Gaps = 16/126 (12%)
Query: 139 FGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSKLKAKEKRKASPTSASSDE 198
F + + H E+L D + VV + K + + S +
Sbjct: 522 FLQDYTLLINILHSEDLGKDV------EFEVVGDAPEKVGPKQAEDAAKSITNGSDDGAQ 575
Query: 199 SDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKR 258
++++ E ++++ +K K +E+E AK+
Sbjct: 576 PSTSTAQEQDDVLIVDSDEEDSSNNADVSEEERSRKRKLDEKE----------NLSAKRS 625
Query: 259 KKHKKD 264
+ +K+
Sbjct: 626 RIEQKE 631
Score = 29.7 bits (66), Expect = 1.3
Identities = 13/123 (10%), Positives = 37/123 (30%), Gaps = 8/123 (6%)
Query: 149 VSHIENLPVDKMSRPLQDVRVVKCNELVLKSKLKAKEKRKASPTSASSDESDKEEEEKEE 208
+ + L D D + + + + + ++ ++ E
Sbjct: 511 IRNGSRLQAD-------DFLQDYTLLINILHSEDLGKDVEFEVVGDAPEKVGPKQAEDAA 563
Query: 209 GEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKR 268
T+ + + ++ +EE+ E+ ++KRK +K+
Sbjct: 564 KSITNGSDDGAQPSTSTAQEQDDVLIVD-SDEEDSSNNADVSEEERSRKRKLDEKENLSA 622
Query: 269 KKK 271
K+
Sbjct: 623 KRS 625
Score = 28.5 bits (63), Expect = 2.5
Identities = 12/63 (19%), Positives = 25/63 (39%)
Query: 182 KAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEE 241
A+ + D +EE+ E+ ++KRK +K+ K+ ++EE
Sbjct: 573 GAQPSTSTAQEQDDVLIVDSDEEDSSNNADVSEEERSRKRKLDEKENLSAKRSRIEQKEE 632
Query: 242 EKE 244
+
Sbjct: 633 LDD 635
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 31.2 bits (70), Expect = 0.17
Identities = 20/88 (22%), Positives = 33/88 (37%)
Query: 182 KAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEE 241
+ +KR A + + +E E R++ K K+KKK K +
Sbjct: 66 EVAKKRSRKTVKAQRPITGASLDLIKERRSLKPEVRKANREEKLKANKEKKKAEKAARKA 125
Query: 242 EKEEGEQTDSEKEAKKRKKHKKDKKKRK 269
EK + T S K +K++ K K
Sbjct: 126 EKAKSAGTQSSKFSKQQAKGAFQKVAAT 153
Score = 27.0 bits (59), Expect = 4.4
Identities = 14/95 (14%), Positives = 35/95 (36%)
Query: 178 KSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKY 237
KS K+++ + + ++ E ++ K ++ K +
Sbjct: 35 KSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKAQRPITGASLDLIKERR 94
Query: 238 EEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
+ E + + + K K++KK +K +K +K
Sbjct: 95 SLKPEVRKANREEKLKANKEKKKAEKAARKAEKAK 129
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 31.0 bits (69), Expect = 0.17
Identities = 18/83 (21%), Positives = 37/83 (44%)
Query: 186 KRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEE 245
K P A++++ D E+ E++ E + E+E + + + + +EEEE+E
Sbjct: 14 KITVVPVVAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEV 73
Query: 246 GEQTDSEKEAKKRKKHKKDKKKR 268
+Q + +E K + K
Sbjct: 74 TDQLEDLREHFKNTEEGKALVHH 96
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 32.2 bits (72), Expect = 0.17
Identities = 18/100 (18%), Positives = 41/100 (41%)
Query: 173 NELVLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKK 232
E V +A K + +++E +E + +EK R + K++++
Sbjct: 491 VERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTL 550
Query: 233 KKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
E+E+ +EG Q +S + + + ++RK +
Sbjct: 551 ALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKACT 590
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 152
Score = 31.1 bits (70), Expect = 0.18
Identities = 5/50 (10%), Positives = 17/50 (34%)
Query: 201 KEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTD 250
++ + + +R ++ + +K K ++ E K +
Sbjct: 62 SFTGQEIKKSKRTILDNCFERTQYWEFEKDKDREHDKLVELCKIQFAAIP 111
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 31.2 bits (70), Expect = 0.19
Identities = 22/95 (23%), Positives = 37/95 (38%)
Query: 174 ELVLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKK 233
E V K + K+ S A+ + K+ EK E E ++ K+ K K +KK
Sbjct: 68 EAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKDEKK 127
Query: 234 KSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKR 268
K E + ++ + + + K K KR
Sbjct: 128 AKKAEVAKSQKTQSKGGATQRGAKGPKIGGGGGKR 162
Score = 28.9 bits (64), Expect = 1.0
Identities = 14/98 (14%), Positives = 38/98 (38%)
Query: 174 ELVLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKK 233
++ ++ K + K + + + + ++K + + + + K++ KK K
Sbjct: 64 DIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTK 123
Query: 234 KSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
K ++ E + ++T S+ A +R K
Sbjct: 124 DEKKAKKAEVAKSQKTQSKGGATQRGAKGPKIGGGGGK 161
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 31.7 bits (71), Expect = 0.22
Identities = 6/55 (10%), Positives = 20/55 (36%)
Query: 216 KEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKK 270
K A+ K ++ K +K+ ++ + ++ + K +++
Sbjct: 346 KAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIA 400
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 31.3 bits (70), Expect = 0.26
Identities = 12/50 (24%), Positives = 15/50 (30%)
Query: 222 KKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
KK K + E +E T K KK K +K K
Sbjct: 261 SLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKV 310
Score = 30.6 bits (68), Expect = 0.57
Identities = 16/64 (25%), Positives = 20/64 (31%), Gaps = 4/64 (6%)
Query: 177 LKSKLKAKEKRKASPTSASSD----ESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKK 232
L LK E + P S + E +E T K KK K +K
Sbjct: 249 LSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALA 308
Query: 233 KKSK 236
K K
Sbjct: 309 KVDK 312
Score = 29.0 bits (64), Expect = 1.8
Identities = 11/60 (18%), Positives = 19/60 (31%)
Query: 184 KEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEK 243
+ K AS ++ + + E K K K KK K + ++ K
Sbjct: 250 SKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAK 309
Score = 26.7 bits (58), Expect = 9.1
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 11/101 (10%)
Query: 146 QNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSKLKAKEKRKASPTSASSDESDKEEEE 205
+ I + ++S L + L + K K P A D + ++
Sbjct: 231 RYAHGLISDYIPKELSDDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKD 290
Query: 206 KEEGEQTDSEKEAKKRKKHKKDK----------KKKKKKSK 236
+ G++ A+K K DK K KK+
Sbjct: 291 LKTGKKNSKMTAAQKALA-KVDKSGMKSIDAFFGAKNKKTG 330
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 31.9 bits (71), Expect = 0.27
Identities = 18/93 (19%), Positives = 39/93 (41%)
Query: 178 KSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKY 237
S+ + +A+ T + S + EEK ++ K K K+ + K + ++
Sbjct: 71 ASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQG 130
Query: 238 EEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKK 270
+E + E +T+ E + K +K K ++
Sbjct: 131 DESKPAAEANKTEKEVQPDVPKNTEKTLKPKEI 163
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 31.3 bits (70), Expect = 0.28
Identities = 7/55 (12%), Positives = 25/55 (45%)
Query: 216 KEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKK 270
+A + + + ++KK ++ + ++ + + +K+ + K K ++ K
Sbjct: 55 GQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALK 109
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 31.7 bits (71), Expect = 0.31
Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Query: 182 KAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEE 241
+E R D+S+ E+ KE E + K + + + + ++ E E
Sbjct: 680 LEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEG 739
Query: 242 E------KEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
K + ++E E ++ KK ++ + +
Sbjct: 740 SVLQAKLKAQALAIETEAELERVKKVREMELIYARA 775
Score = 31.3 bits (70), Expect = 0.42
Identities = 16/93 (17%), Positives = 39/93 (41%)
Query: 180 KLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEE 239
+L+A S +A ++ + E + EGE + + + K + + + + ++ K E
Sbjct: 708 ELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVRE 767
Query: 240 EEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
E Q + E ++ + + KK ++
Sbjct: 768 MELIYARAQLELEVSKAQQLANVEAKKFKEMTE 800
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 31.3 bits (70), Expect = 0.35
Identities = 14/74 (18%), Positives = 26/74 (35%)
Query: 199 SDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKR 258
+ + E++E + ++E+K + K + + E+ KK
Sbjct: 348 KNPKLREEQEAARRRQQRESKSNAATPTKGPEGKVAGPADAPMDSGAEEEKAGAATVKKP 407
Query: 259 KKHKKDKKKRKKKS 272
K KKK KK
Sbjct: 408 SPSKARKKKLNKKG 421
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 30.6 bits (68), Expect = 0.48
Identities = 12/73 (16%), Positives = 33/73 (45%)
Query: 199 SDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKR 258
++ E+ KE EQ E++ + + + + E+ + +G DS +A
Sbjct: 108 TEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPG 167
Query: 259 KKHKKDKKKRKKK 271
++++++R ++
Sbjct: 168 PSKQQERRRRSRE 180
Score = 27.9 bits (61), Expect = 3.3
Identities = 8/71 (11%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 201 KEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEA-KKRK 259
KE+ KE+ ++ + ++ + + + + E+ K+ ++R+
Sbjct: 118 KEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRR 177
Query: 260 KHKKDKKKRKK 270
++ + K ++
Sbjct: 178 SREEAQAKAQE 188
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 30.5 bits (68), Expect = 0.49
Identities = 18/96 (18%), Positives = 41/96 (42%)
Query: 177 LKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSK 236
+K+ + +K+ + S S EE+ + + +E + + K K +K++ K
Sbjct: 72 TNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLK 131
Query: 237 YEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
E E ++ + +S E + + + + KKK
Sbjct: 132 KEMLELEKLALELESLVENEVKNIKETQQIIFKKKE 167
Score = 28.9 bits (64), Expect = 1.7
Identities = 11/71 (15%), Positives = 29/71 (40%)
Query: 201 KEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKK 260
K + K E D+ + +K + K +++ EE+ + + +E + +
Sbjct: 59 KLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQN 118
Query: 261 HKKDKKKRKKK 271
K K ++++
Sbjct: 119 EIKRKSEKQED 129
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens}
Length = 276
Score = 30.4 bits (68), Expect = 0.51
Identities = 8/68 (11%), Positives = 24/68 (35%)
Query: 203 EEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHK 262
+ ++ ++ + + + +K K Y + ++E + + + + K
Sbjct: 111 VKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKKEGATQREIEKAAV 170
Query: 263 KDKKKRKK 270
K KK
Sbjct: 171 KSKKATDT 178
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 30.2 bits (67), Expect = 0.53
Identities = 10/54 (18%), Positives = 26/54 (48%)
Query: 215 EKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKR 268
E+ A+K +K ++ + Y++E E E ++++AK + + + +
Sbjct: 29 ERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAGSYYVEAQHK 82
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA
synthetase, ATP-binding, ligas nucleotide-binding,
protein biosynthesis; NMR {Brugia malayi}
Length = 113
Score = 29.2 bits (65), Expect = 0.61
Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 177 LKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSK 236
L++ +A K+S ++ E +T +K K+++++ K +K +
Sbjct: 24 LRTLYQAMIITKSSKGDFLIRTKKDGKQVWEAASKTALKK---SWKRYEQEMLKNEKVAA 80
Query: 237 YEEEEEKEEGEQTDSEKEAKK 257
E++ E + +EAKK
Sbjct: 81 KMLEKDATEVGVKAALEEAKK 101
>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL ATP11; half
barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs
138}
Length = 299
Score = 30.1 bits (67), Expect = 0.64
Identities = 11/71 (15%), Positives = 25/71 (35%)
Query: 202 EEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKH 261
++ K EG ++ E + + + ++ KK+ K E E+ + K K
Sbjct: 22 LQKAKAEGVESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIHTNKEHKTTKM 81
Query: 262 KKDKKKRKKKS 272
++
Sbjct: 82 SNKSNEKSGNV 92
Score = 29.7 bits (66), Expect = 0.98
Identities = 13/79 (16%), Positives = 24/79 (30%)
Query: 158 DKMSRPLQDVRVVKCNELVLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKE 217
+K+ + + V EL + + +EK+K E ++ K
Sbjct: 19 EKLLQKAKAEGVESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIHTNKEHKT 78
Query: 218 AKKRKKHKKDKKKKKKKSK 236
K K + K K
Sbjct: 79 TKMSNKSNEKSGNVLPKDK 97
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication,
transcription, hydrolase, replication,transcription,
hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP:
d.136.1.3 d.136.1.3
Length = 544
Score = 30.0 bits (66), Expect = 0.98
Identities = 14/78 (17%), Positives = 22/78 (28%)
Query: 178 KSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKY 237
+ KRK S + + K E E + K
Sbjct: 3 RETNFNGTKRKRSDVAEKVAQRWKSVRYSAEMENMAPVNSNNDSDDCVIVSESKIIDLTN 62
Query: 238 EEEEEKEEGEQTDSEKEA 255
+E++ E E D+ K A
Sbjct: 63 QEQDLSERIETNDTAKGA 80
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 29.7 bits (67), Expect = 1.00
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 191 PTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGE 247
P S+ ++ E K + + S K KK+K KK K + + E EE E G+
Sbjct: 347 PDLYKSEMEVQDAELKALLQSSASRKTQKKKK--KKASKTAENATSGETLEENEAGD 401
Score = 27.4 bits (61), Expect = 6.3
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 191 PTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTD 250
P +S+ E ++ E + + A ++ + KK KK K E EE E D
Sbjct: 344 PFEPDLYKSEMEVQDAEL--KALLQSSASRKTQKKKKKKASKTAENATSGETLEENEAGD 401
Score = 26.6 bits (59), Expect = 9.4
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 201 KEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAK 256
+ + K E E D+E +A + + +KKKKK + E GE + +
Sbjct: 346 EPDLYKSEMEVQDAELKALLQSSASRKTQKKKKKKASKTAENATSGETLEENEAGD 401
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 29.4 bits (65), Expect = 1.1
Identities = 9/81 (11%), Positives = 22/81 (27%)
Query: 192 TSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDS 251
+ + + +E + + + ++ K K +K K+ Y + E
Sbjct: 99 KTWQKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTERSATNQE 158
Query: 252 EKEAKKRKKHKKDKKKRKKKS 272
KK +
Sbjct: 159 RNANADSSLSPDQVKKMHDRV 179
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 29.5 bits (67), Expect = 1.1
Identities = 5/44 (11%), Positives = 13/44 (29%), Gaps = 6/44 (13%)
Query: 196 SDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEE 239
+ K+ K + +KK + + K ++
Sbjct: 239 LADIAKDMVNDPN------YDSVKVEETDDPNKKTRTVEKKVKK 276
Score = 28.0 bits (63), Expect = 3.3
Identities = 5/47 (10%), Positives = 12/47 (25%)
Query: 180 KLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKK 226
L + + + + + + + K R KK
Sbjct: 227 YLLHENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKK 273
Score = 26.4 bits (59), Expect = 8.9
Identities = 5/32 (15%), Positives = 8/32 (25%)
Query: 232 KKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKK 263
K + + + K R KK
Sbjct: 242 IAKDMVNDPNYDSVKVEETDDPNKKTRTVEKK 273
>2xzm_Y RPS6E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_Y
Length = 293
Score = 29.4 bits (65), Expect = 1.2
Identities = 25/132 (18%), Positives = 43/132 (32%)
Query: 141 HVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSKLKAKEKRKASPTSASSDESD 200
+ + V+ I+ L + R L R +L K K S + +
Sbjct: 110 ALQIVKKGVAEIDGLTTVTLPRKLGPKRANNIKKLFGLKKEDDPILIKKSVIRRTFKTAK 169
Query: 201 KEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKK 260
++ K Q E RKK K +K ++ +EE E+ ++ A K
Sbjct: 170 GKDRTKCPKIQRLITPERILRKKVYKAEKTQRYVKTNAAKEEYEKFLSEWKKQRAAKAHA 229
Query: 261 HKKDKKKRKKKS 272
+ KK
Sbjct: 230 ASAPVVEAPKKV 241
Score = 27.9 bits (61), Expect = 3.9
Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 2/90 (2%)
Query: 184 KEKRKASPTSASSDESDKEEEEKEEGEQ--TDSEKEAKKRKKHKKDKKKKKKKSKYEEEE 241
+ RK + + K KEE E+ ++ +K+ + + K ++
Sbjct: 187 RILRKKVYKAEKTQRYVKTNAAKEEYEKFLSEWKKQRAAKAHAASAPVVEAPKKVEAPKK 246
Query: 242 EKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
+ +T K K + K
Sbjct: 247 VDPKAAKTTPAATKATPAATKVAPKTQAAK 276
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 29.7 bits (65), Expect = 1.2
Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 12/89 (13%)
Query: 195 SSDESDKEEEEKEEGEQTDSEKEAKKRKKH------------KKDKKKKKKKSKYEEEEE 242
+D+ +K + ++E K+ K+ KK K+ + K + +
Sbjct: 105 MNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACK 164
Query: 243 KEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
+E+ + + + KK + K
Sbjct: 165 EEKLAISREANSKADPSLNPEQLKKLQDK 193
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB:
1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I*
1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I*
1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Length = 348
Score = 29.4 bits (65), Expect = 1.3
Identities = 11/69 (15%), Positives = 23/69 (33%)
Query: 187 RKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEG 246
KA + +EE E Q A + +D + ++ +E
Sbjct: 272 SKADAQVRALASQIDDEEALPEELQGVEADVATEEPTDDQDDDTASEDDADADDAAEEAD 331
Query: 247 EQTDSEKEA 255
+ D +++A
Sbjct: 332 DDDDDDEDA 340
Score = 27.5 bits (60), Expect = 4.6
Identities = 8/43 (18%), Positives = 19/43 (44%)
Query: 176 VLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEA 218
V + +AS D++D ++ +E + D +++A
Sbjct: 298 VEADVATEEPTDDQDDDTASEDDADADDAAEEADDDDDDDEDA 340
Score = 27.5 bits (60), Expect = 5.6
Identities = 10/77 (12%), Positives = 25/77 (32%), Gaps = 3/77 (3%)
Query: 176 VLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKS 235
V+ + + + + S DE EE + +E+ + +
Sbjct: 266 VVPDLVSKADAQVRALASQIDDEEALPEELQGVEADVATEEPTDDQDDDTASEDDADAD- 324
Query: 236 KYEEEEEKEEGEQTDSE 252
+ EE ++ + D +
Sbjct: 325 --DAAEEADDDDDDDED 339
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET:
ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Length = 559
Score = 29.1 bits (66), Expect = 1.6
Identities = 7/65 (10%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Query: 174 ELVLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEA--KKRKKHKKDKKKK 231
E ++ + K S + +E E ++ + + K ++ K
Sbjct: 466 EWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLGERVKD 525
Query: 232 KKKSK 236
+ +
Sbjct: 526 VRLTH 530
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse,
BAR domain, endocytosis; 2.60A {Mus musculus} PDB:
3qe6_A
Length = 320
Score = 29.0 bits (64), Expect = 1.6
Identities = 8/74 (10%), Positives = 22/74 (29%)
Query: 198 ESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKK 257
+ ++ K+ K+ + K Y + E+ QT
Sbjct: 118 FHRPVLGGFRASRAAEDGFRKAQKPWLKRLKEVEASKKSYHTARKDEKTAQTRESHAKAD 177
Query: 258 RKKHKKDKKKRKKK 271
++ +K +++
Sbjct: 178 SSMSQEQLRKLQER 191
Score = 28.6 bits (63), Expect = 2.2
Identities = 10/95 (10%), Positives = 27/95 (28%)
Query: 177 LKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSK 236
L + + E ++K KR K + KK ++
Sbjct: 102 LHGPDSERVRTWQRGAFHRPVLGGFRASRAAEDGFRKAQKPWLKRLKEVEASKKSYHTAR 161
Query: 237 YEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
+E+ + ++ + + K ++ +
Sbjct: 162 KDEKTAQTRESHAKADSSMSQEQLRKLQERVGRCT 196
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
{Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A
3q84_A
Length = 312
Score = 29.0 bits (64), Expect = 1.6
Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 2/85 (2%)
Query: 189 ASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKK--KKKSKYEEEEEKEEG 246
E+ ++ E ++E +K +K K K+ K + ++E+
Sbjct: 116 FEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKL 175
Query: 247 EQTDSEKEAKKRKKHKKDKKKRKKK 271
+ + + KK + K
Sbjct: 176 AISREANSKADPSLNPEQLKKLQDK 200
Score = 27.1 bits (59), Expect = 7.2
Identities = 13/72 (18%), Positives = 28/72 (38%)
Query: 200 DKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRK 259
+E KE + ++ +K + + KK + +EE+ E + +
Sbjct: 133 GGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPE 192
Query: 260 KHKKDKKKRKKK 271
+ KK + K +K
Sbjct: 193 QLKKLQDKIEKC 204
>3pl0_A Uncharacterized protein; quorum sensing, biofilm formation,
double-stranded beta-HELI structural genomics; HET: MSE;
1.91A {Methylibium petroleiphilum}
Length = 254
Score = 28.8 bits (64), Expect = 1.8
Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 8/38 (21%)
Query: 121 QFFITT-----QPAP---HLDGVHVVFGHVVSGQNVVS 150
F I T +P P H DGV V + Q V
Sbjct: 148 PFRIDTEGGVGRPTPEGAHRDGVDFVAVVFIGRQGVRG 185
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA,
national project on structural and functional analyses;
2.61A {Homo sapiens} SCOP: a.238.1.4
Length = 305
Score = 28.9 bits (64), Expect = 1.8
Identities = 12/69 (17%), Positives = 30/69 (43%)
Query: 203 EEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHK 262
+E K+E + + ++ K+ + K ++E + ++ + Q EK K
Sbjct: 112 QELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTK 171
Query: 263 KDKKKRKKK 271
D +K +++
Sbjct: 172 ADVEKARQQ 180
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 29.0 bits (65), Expect = 1.9
Identities = 15/110 (13%), Positives = 38/110 (34%), Gaps = 15/110 (13%)
Query: 174 ELVLKSKLKAKEKRKASPTSASSDESDKEEEEK---------------EEGEQTDSEKEA 218
++V+ +LK + D ++ +E + E E +
Sbjct: 41 DIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGL 100
Query: 219 KKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKR 268
K+ + K + ++ + + E+ E D E+E + + + +R
Sbjct: 101 KRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPER 150
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_e
Length = 244
Score = 28.6 bits (63), Expect = 2.0
Identities = 10/54 (18%), Positives = 23/54 (42%)
Query: 215 EKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKR 268
+ A+K K + K + +Y E E ++ E ++EA+ + + +
Sbjct: 31 KVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKGGFYVSPEAK 84
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription
regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo
sapiens}
Length = 214
Score = 28.6 bits (63), Expect = 2.1
Identities = 10/57 (17%), Positives = 25/57 (43%)
Query: 216 KEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
K +K + K+ +++Y E + E + + ++ R+ KK +K ++
Sbjct: 150 KNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRKYGAEEC 206
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 2.2
Identities = 49/358 (13%), Positives = 98/358 (27%), Gaps = 124/358 (34%)
Query: 5 RPRCYFDVEI-SDIPLGRI--VFELYSDICPITCENFRALCTGEKGIGKTT--------- 52
R R Y D ++ + + R+ +L + + + G G GKT
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-GVLGSGKTWVALDVCLSY 174
Query: 53 ------GKNLHYLNI---------------VFHRVVKGFMIQSGDFSVGNGTGGESIYGG 91
+ +LN+ + +++ + D S SI
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW-TSRSDHSSNIKLRIHSI--- 230
Query: 92 TFEDENFELKHDEPF---LLSMAN-RGKDT-----NGSQFFITTQPAPHLDGV------H 136
+ E L +P+ LL + N + + +TT+ D + H
Sbjct: 231 --QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 137 VVFGHVVSG------QNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSKLKAKEKR--- 187
+ H ++++ + + P + V+ N L + A+ R
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--PRE---VLTTNPRRL--SIIAESIRDGL 341
Query: 188 ------------KASPTSASSDESDKEEEEKE------------------------EGEQ 211
K + SS + E ++ + +
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 212 TDSEKEAKKRKKHKKDKKKKKKKSKYE------EEEEKEEGEQTDSEKEAKKRKKHKK 263
+D K K +K+ K+S E + K E E H+
Sbjct: 402 SDVMVVVNKLHK-YSLVEKQPKESTISIPSIYLELKVKLENEYA----------LHRS 448
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc
finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus
musculus} PDB: 3av5_A* 3av6_A*
Length = 1330
Score = 28.8 bits (63), Expect = 2.7
Identities = 10/56 (17%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 218 AKKRKKHKKDKKKKKKKSKYEEEE-EKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
A KR+ + + ++ ++ + +E E+EE + + K+ + + + +RK
Sbjct: 1 AAKRRPKEAEPEQVAPETPEDRDEDEREEKRRKTTRKKLESHTVPVQSRSERKAAQ 56
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 352
Score = 28.3 bits (63), Expect = 2.8
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 178 KSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRK-KHKKDKKKKKKKSK 236
K K+ R + +A ++ +D EEEE E G K +K K K + +SK
Sbjct: 61 KQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSK 120
Query: 237 -YEEEEEKEEGEQTDSEKEAKKRKKHKKDKK 266
+ E ++ E +Q K A K K
Sbjct: 121 RFLEIQKLREIKQEYDLKTALSLMKQMSSTK 151
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 28.3 bits (63), Expect = 3.0
Identities = 10/48 (20%), Positives = 23/48 (47%)
Query: 197 DESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKE 244
+ ++E E + + + E+ ++ K KKK + Y+ E+ K+
Sbjct: 28 EIENEELENGNDNNEAEEEEIDEETGAIKSTKKKISLQDIYDLEDLKK 75
Score = 27.5 bits (61), Expect = 6.2
Identities = 7/105 (6%), Positives = 27/105 (25%), Gaps = 6/105 (5%)
Query: 133 DGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSKLKAKEKRK-ASP 191
+ + S V + + ++ RP + + + + A
Sbjct: 916 NDIICTTN---SEVECVVNAQRHAGAQLRRPAN--EIYEIGKTYPAKVIYIDYANITAEV 970
Query: 192 TSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSK 236
+ D + + + + + + ++ K +
Sbjct: 971 SLLDHDVKQQYVPISYSKDPSIWDLKQELEDAEEERKLMMAEARA 1015
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 28.1 bits (63), Expect = 3.0
Identities = 14/58 (24%), Positives = 25/58 (43%)
Query: 207 EEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKD 264
EE + D +E + + + + +EEEE EE E E + ++ K+D
Sbjct: 317 EEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKED 374
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A
{Escherichia coli} PDB: 2iop_A
Length = 624
Score = 28.4 bits (64), Expect = 3.0
Identities = 7/65 (10%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Query: 174 ELVLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEA--KKRKKHKKDKKKK 231
E ++ + K S + +E E ++ + + K ++ K
Sbjct: 466 EWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLGERVKD 525
Query: 232 KKKSK 236
+ +
Sbjct: 526 VRLTH 530
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 28.1 bits (63), Expect = 3.4
Identities = 4/20 (20%), Positives = 13/20 (65%)
Query: 220 KRKKHKKDKKKKKKKSKYEE 239
++HK + K+ +++ +E+
Sbjct: 387 GSRRHKSNLKRNTRQADFEK 406
>2ys0_A Ectonucleotide pyrophosphatase/phosphodiesterase family member 1;
E-NPP 1, phosphodiesterase I/nucleotide pyrophosphatase
1; NMR {Homo sapiens}
Length = 56
Score = 25.7 bits (56), Expect = 3.5
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 28 SDICPIT---CENFRALCTGEKGIGKTTG 53
SD C C N+ ++C GEK G ++G
Sbjct: 28 SDDCKDQGDCCINYSSVCQGEKSSGPSSG 56
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces
cerevisiae}
Length = 1030
Score = 28.3 bits (63), Expect = 3.6
Identities = 7/105 (6%), Positives = 28/105 (26%), Gaps = 6/105 (5%)
Query: 133 DGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSKLKAKEKRK-ASP 191
+ + S V + + ++ RP ++ + + + A
Sbjct: 919 NDIICTTN---SEVECVVNAQRHAGAQLRRPANEI--YEIGKTYPAKVIYIDYANITAEV 973
Query: 192 TSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSK 236
+ D + + + + + + ++ K +
Sbjct: 974 SLLDHDVKQQYVPISYSKDPSIWDLKQELEDAEEERKLMMAEARA 1018
>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides);
2.00A {Arthrobacter SP} SCOP: c.33.1.3
Length = 264
Score = 27.8 bits (62), Expect = 3.8
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 125 TTQPAPH---LDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQ 165
P L + FG V S +VV +++ LP + + P
Sbjct: 201 DRVPGVVQWNLYDIDNKFGDVESTDSVVQYLDALPQFEDTVPKT 244
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Length = 301
Score = 27.8 bits (61), Expect = 3.8
Identities = 14/70 (20%), Positives = 32/70 (45%)
Query: 203 EEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHK 262
+E K+E + E +++ K+ + K K+E + + E +E+ + K
Sbjct: 105 QEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATK 164
Query: 263 KDKKKRKKKS 272
D +K K+++
Sbjct: 165 ADVEKAKQQA 174
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
NPPSFA, national project on P structural and functional
analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1
PDB: 2dma_A 4dt0_A
Length = 198
Score = 27.6 bits (61), Expect = 3.9
Identities = 13/69 (18%), Positives = 30/69 (43%)
Query: 201 KEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKK 260
KE E K E ++ ++A+K K+ + + K + + + E E+ A+ +
Sbjct: 13 KEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLEVR 72
Query: 261 HKKDKKKRK 269
K+ + +
Sbjct: 73 RKRLAIQEE 81
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 27.4 bits (60), Expect = 4.2
Identities = 11/58 (18%), Positives = 26/58 (44%)
Query: 215 EKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
+ +A++RK K++K + + ++ E E + + +KRK K ++
Sbjct: 21 KAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTGAFYVPAEA 78
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis;
2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Length = 337
Score = 27.6 bits (60), Expect = 4.2
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 2/85 (2%)
Query: 189 ASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKK--KKKSKYEEEEEKEEG 246
++ ++ E ++E +K +K K K+ K Y ++E
Sbjct: 107 LEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERL 166
Query: 247 EQTDSEKEAKKRKKHKKDKKKRKKK 271
T ++ + +KK K
Sbjct: 167 AMTREMNSKTEQSVTPEQQKKLVDK 191
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 27.9 bits (62), Expect = 4.9
Identities = 5/48 (10%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 226 KD--KKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
KD K+ + E +++ + ++ + K +
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQ 675
>2qq2_A Cytosolic acyl coenzyme A thioester hydrolase; ACOT7, C-terminal
domain, thioesterase, structural genomics, structural
genomics consortium, SGC; 2.80A {Homo sapiens}
Length = 193
Score = 27.0 bits (60), Expect = 5.4
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 248 QTDSEK----EAKKRKKHKKDKKKRKKK 271
+T+ EK E K R K K++ +
Sbjct: 165 ETEDEKKRFEEGKGRYLQMKAKRQGHAE 192
Score = 26.6 bits (59), Expect = 7.6
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 211 QTDSEK----EAKKRKKHKKDKKKKKKK 234
+T+ EK E K R K K++ +
Sbjct: 165 ETEDEKKRFEEGKGRYLQMKAKRQGHAE 192
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 26.8 bits (59), Expect = 5.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 204 EEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSK 236
EKE+ E+ A+K+K +K KK+K ++
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLMAR 183
Score = 26.8 bits (59), Expect = 6.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 241 EEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
EKE+ E+ A+K+K +K KK+K +
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLMA 182
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga
maritima} PDB: 2gaj_A*
Length = 633
Score = 27.5 bits (62), Expect = 5.8
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 220 KRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKH 261
+ D K+KK +E + E EK+ +K
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 27.1 bits (59), Expect = 6.1
Identities = 11/93 (11%), Positives = 33/93 (35%)
Query: 179 SKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYE 238
+ K+K+ A+ + + ++ E KKR+ + K K+ +K
Sbjct: 2 EAVPEKKKKVATVPGTLKKKVPAGPKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFAL 61
Query: 239 EEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
+ K + + + ++ + + + +
Sbjct: 62 KTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMA 94
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right
handed coiled-coil, ATPase/SY ATP binding, membrane,
hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E
3j0j_J
Length = 187
Score = 26.8 bits (59), Expect = 6.3
Identities = 7/61 (11%), Positives = 23/61 (37%)
Query: 211 QTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKK 270
+ +E + + + + K ++ E EEK + E+ + + + + +
Sbjct: 4 EAILSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAG 63
Query: 271 K 271
+
Sbjct: 64 E 64
>3eps_A Isocitrate dehydrogenase kinase/phosphatase; ATP-binding,
glyoxylate bypass, nucleotide-binding, protein
phosphatase; HET: AMP ATP; 2.80A {Escherichia coli O157}
PDB: 3lcb_A* 3lc6_A*
Length = 578
Score = 27.1 bits (60), Expect = 7.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 20 GRIVFELYSDICPITCENFRAL 41
GR+VF Y +IC +T NFR +
Sbjct: 469 GRVVFYDYDEICYMTEVNFRDI 490
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.70A
{Homo sapiens}
Length = 350
Score = 26.8 bits (58), Expect = 7.6
Identities = 11/88 (12%), Positives = 30/88 (34%), Gaps = 12/88 (13%)
Query: 196 SDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKK------------KKKKSKYEEEEEK 243
+D+ +K + ++E K+ K+ + +K + K + ++
Sbjct: 113 NDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKE 172
Query: 244 EEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
E+ + + + KK + K
Sbjct: 173 EKLAISREANSKADPSLNPEQLKKLQDK 200
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 26.8 bits (59), Expect = 7.7
Identities = 10/46 (21%), Positives = 23/46 (50%)
Query: 200 DKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEE 245
D EE E++ E+ +E+ ++ K + +++ + EE + E
Sbjct: 206 DPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEWAEENADNVE 251
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 553
Score = 26.9 bits (60), Expect = 7.9
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 180 KLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSK 236
+ A + ++A + S EE+++E E+ E +K+KK K ++ K +
Sbjct: 40 RKMAPQVKEAVEAAVERVNSLSPEEQQQEMERLGLEITERKQKKRKGLRELAGVKGE 96
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 26.4 bits (57), Expect = 8.1
Identities = 4/38 (10%), Positives = 18/38 (47%)
Query: 217 EAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKE 254
+ +KRK + K+ ++++ + + ++ ++
Sbjct: 138 DVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEA 175
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct
genomics, riken structural genomics/proteomics
initiative; NMR {Mus musculus} SCOP: b.34.13.3
Length = 133
Score = 26.3 bits (57), Expect = 8.2
Identities = 10/59 (16%), Positives = 24/59 (40%)
Query: 204 EEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHK 262
+ ++ Q +SEK + + + K + +K K++E ++ A K+
Sbjct: 71 KTVKDAVQKNSEKYLSELAEQPERKITRNQKRKHDEINHVQKTYAEMDPTTAALEKESG 129
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 26.6 bits (58), Expect = 8.3
Identities = 0/91 (0%), Positives = 0/91 (0%), Gaps = 6/91 (6%)
Query: 182 KAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKY---- 237
+ ++ ++ + + K +S
Sbjct: 115 SRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYN 174
Query: 238 --EEEEEKEEGEQTDSEKEAKKRKKHKKDKK 266
Sbjct: 175 KL 205
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural
genomics consortium, BCR, CR associated substrate,
transferase; 2.18A {Homo sapiens}
Length = 406
Score = 26.7 bits (58), Expect = 8.4
Identities = 7/56 (12%), Positives = 21/56 (37%)
Query: 216 KEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
++ ++ + +K KS+Y + ++ +K + + K K +
Sbjct: 122 QQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASKDKDRDKAKDKYVRSL 177
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group,
transcription, LSP1, mitochon transcription-DNA complex;
HET: DNA; 2.50A {Homo sapiens}
Length = 238
Score = 26.7 bits (58), Expect = 8.6
Identities = 16/88 (18%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 191 PTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKK-------KKKSKYEEEEEK 243
P SA + + +E + + K K+ K+ D +K+ + +++Y E +
Sbjct: 150 PRSAYNVYVAERFQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKS 209
Query: 244 EEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
E + + ++ R+ KK +K ++
Sbjct: 210 WEEQMIEVGRKDLLRRTIKKQRKYGAEE 237
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil,
hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Length = 251
Score = 26.7 bits (58), Expect = 8.7
Identities = 11/71 (15%), Positives = 29/71 (40%)
Query: 201 KEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKK 260
K +E E D +K+ + ++ + + K +E K+E + ++ + K
Sbjct: 126 KALKESSESNIKDIKKKLEAKRLDRIQVMMRSTSDKAAQERLKKEINNSHIQEVVQTIKL 185
Query: 261 HKKDKKKRKKK 271
+ + ++K
Sbjct: 186 LTEKTARYQQK 196
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 26.8 bits (59), Expect = 8.9
Identities = 12/83 (14%), Positives = 23/83 (27%), Gaps = 9/83 (10%)
Query: 173 NELVLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKK 232
N+ +++ + E++ +E K K
Sbjct: 263 NKAAKTQLAVCQQRIR---------RQLAREKKLYANMFERLAEEENKAKAEASSGDHPT 313
Query: 233 KKSKYEEEEEKEEGEQTDSEKEA 255
EE++ G Q+ E EA
Sbjct: 314 DTEMKEEQKSNTAGSQSQVETEA 336
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 26.7 bits (58), Expect = 8.9
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 37 NFRALCTGEKGIGKTT 52
F + GE G+GK+T
Sbjct: 8 EFTLMVVGESGLGKST 23
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 26.6 bits (59), Expect = 9.4
Identities = 14/63 (22%), Positives = 22/63 (34%)
Query: 174 ELVLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKK 233
E + + K T E EE+ + E E + E K K+ D+ +K
Sbjct: 507 EYAFTQLKEFEGKTLVDITKDFELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVV 566
Query: 234 KSK 236
S
Sbjct: 567 VSY 569
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 26.8 bits (60), Expect = 9.5
Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 207 EEGEQTDSEKEAKK---RKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKK 263
+E + +SE A++ +K++++++K K+ K EE+ KE E ++E K+
Sbjct: 253 DEILEVESEPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDREKYGTVHWKE 312
Query: 264 DKKKRKKKS 272
+ ++
Sbjct: 313 RSYIKYREK 321
>3nj2_A DUF269-containing protein; cyanobacteria, circadium rhythms,
nitrogen fixation, unknown; 1.59A {Cyanothece SP}
Length = 174
Score = 26.0 bits (57), Expect = 9.5
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 171 KCNELVLKSKLKAKEKRKASPTSASSDES 199
+ELV+ + K+KR+ D +
Sbjct: 56 WTDELVIAPYVIPKKKRREISLEGDIDPT 84
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.131 0.365
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,938,732
Number of extensions: 236213
Number of successful extensions: 2437
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1897
Number of HSP's successfully gapped: 493
Length of query: 272
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 180
Effective length of database: 4,133,061
Effective search space: 743950980
Effective search space used: 743950980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.1 bits)