BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17827
(299 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3UR85|MRF_MOUSE Myelin regulatory factor OS=Mus musculus GN=Myrf PE=2 SV=2
Length = 1138
Score = 303 bits (776), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 149/296 (50%), Positives = 193/296 (65%), Gaps = 40/296 (13%)
Query: 2 MPVPIYTVDADKGFNFSNADDAFVCQKKNHFQITCHTQLQGDPQFVKTPEGMRKITSFHL 61
+P+ Y VDADKGFNFS DDAFVCQKKNHFQ+T + + G+P++VKTPEG++ + F+L
Sbjct: 372 LPMLTYRVDADKGFNFSVGDDAFVCQKKNHFQVTVYIGMLGEPKYVKTPEGLKPLDCFYL 431
Query: 62 HFYGVKVESLTQTIKVEQSQSDRSKKAFHPVLPVPIYTVDADKGFNFSNADDAFVCQKKN 121
+GVK+E+L Q+I +EQSQSDRSK+ F+PV N V +
Sbjct: 432 KLHGVKLEALNQSINIEQSQSDRSKRPFNPVT------------VNLPPEQVTKVTVGRL 479
Query: 122 HFQDRIFMESVGAVKELCKVTQNLENRIEDETTSNNMRKKGKPNPDQRYFYLVVGLHAHC 181
HF ETT+NNMRKKGKPNPDQRYF LVV L AH
Sbjct: 480 HF---------------------------SETTANNMRKKGKPNPDQRYFMLVVALQAHA 512
Query: 182 SDSNHYPIVSHASERIIVRASNPGQFESDVELCWQRGSSPESVFHSGRVGINTERPDEAL 241
+ N Y + + SERIIVRASNPGQFESD ++ WQR P++VFH GRVGINT+RPDEAL
Sbjct: 513 QNQN-YTLAAQISERIIVRASNPGQFESDSDVLWQRAQLPDTVFHHGRVGINTDRPDEAL 571
Query: 242 VVHGNVKLTGHIIQPSDIRAKQHITKCNTKEQLRNVQQLNVVQFHYTPEFALHFGL 297
VVHGNVK+ G ++ PSD+RAK+H+ + +T EQL+ + ++ +V + Y PEFA G+
Sbjct: 572 VVHGNVKVMGSLMHPSDLRAKEHVQEVDTTEQLKRISRMRLVHYRYKPEFAASAGI 627
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 45 QFVKTPEGMRKITSFHLHFYGVKVE-SLTQTIKVEQSQSDRSKKAFHPVLPVPIYTVDAD 103
Q V T E +++I+ L Y K E + + I+ ++ + +LP + D
Sbjct: 596 QEVDTTEQLKRISRMRLVHYRYKPEFAASAGIEATAPETGVIAQEVKEILPEAVKDT-GD 654
Query: 104 KGFNFSNADDAFVCQKKNHFQDRIFMESVGAVKELCKVTQNLENRIED 151
F + F+ K +RIFME+VGAVKELCK+T NLE RI++
Sbjct: 655 VVFANGKTIENFLVVNK----ERIFMENVGAVKELCKLTDNLETRIDE 698
>sp|Q9Y2G1|MRF_HUMAN Myelin regulatory factor OS=Homo sapiens GN=MYRF PE=1 SV=3
Length = 1151
Score = 303 bits (775), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 149/296 (50%), Positives = 193/296 (65%), Gaps = 40/296 (13%)
Query: 2 MPVPIYTVDADKGFNFSNADDAFVCQKKNHFQITCHTQLQGDPQFVKTPEGMRKITSFHL 61
+P+ Y VDADKGFNFS DDAFVCQKKNHFQ+T + + G+P++VKTPEG++ + F+L
Sbjct: 372 LPMLTYRVDADKGFNFSVGDDAFVCQKKNHFQVTVYIGMLGEPKYVKTPEGLKPLDCFYL 431
Query: 62 HFYGVKVESLTQTIKVEQSQSDRSKKAFHPVLPVPIYTVDADKGFNFSNADDAFVCQKKN 121
+GVK+E+L Q+I +EQSQSDRSK+ F+PV N V +
Sbjct: 432 KLHGVKLEALNQSINIEQSQSDRSKRPFNPVT------------VNLPPEQVTKVTVGRL 479
Query: 122 HFQDRIFMESVGAVKELCKVTQNLENRIEDETTSNNMRKKGKPNPDQRYFYLVVGLHAHC 181
HF ETT+NNMRKKGKPNPDQRYF LVV L AH
Sbjct: 480 HF---------------------------SETTANNMRKKGKPNPDQRYFMLVVALQAHA 512
Query: 182 SDSNHYPIVSHASERIIVRASNPGQFESDVELCWQRGSSPESVFHSGRVGINTERPDEAL 241
+ N Y + + SERIIVRASNPGQFESD ++ WQR P++VFH GRVGINT+RPDEAL
Sbjct: 513 QNQN-YTLAAQISERIIVRASNPGQFESDSDVLWQRAQVPDTVFHHGRVGINTDRPDEAL 571
Query: 242 VVHGNVKLTGHIIQPSDIRAKQHITKCNTKEQLRNVQQLNVVQFHYTPEFALHFGL 297
VVHGNVK+ G ++ PSD+RAK+H+ + +T EQL+ + ++ +V + Y PEFA G+
Sbjct: 572 VVHGNVKVMGSLMHPSDLRAKEHVQEVDTTEQLKRISRMRLVHYRYKPEFAASAGI 627
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 45 QFVKTPEGMRKITSFHLHFYGVKVE-SLTQTIKVEQSQSDRSKKAFHPVLPVPIYTVDAD 103
Q V T E +++I+ L Y K E + + I+ ++ + +LP + D
Sbjct: 596 QEVDTTEQLKRISRMRLVHYRYKPEFAASAGIEATAPETGVIAQEVKEILPEAVKDT-GD 654
Query: 104 KGFNFSNADDAFVCQKKNHFQDRIFMESVGAVKELCKVTQNLENRIED 151
F + F+ K +RIFME+VGAVKELCK+T NLE RI++
Sbjct: 655 MVFANGKTIENFLVVNK----ERIFMENVGAVKELCKLTDNLETRIDE 698
>sp|Q66IV1|MRF_XENLA Myelin regulatory factor OS=Xenopus laevis GN=myrf PE=2 SV=1
Length = 1092
Score = 303 bits (775), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 154/297 (51%), Positives = 193/297 (64%), Gaps = 42/297 (14%)
Query: 2 MPVPIYTVDADKGFNFSNADDAFVCQKKNHFQITCHTQLQGDPQFVKTPEGMRKITSFHL 61
+P+ Y VDADKGFNFS DD+FVCQKKNHFQ+T + + G+P++VKTPEG+ I F L
Sbjct: 338 LPMLTYKVDADKGFNFSTGDDSFVCQKKNHFQVTVYIGMIGEPKYVKTPEGILPIECFFL 397
Query: 62 HFYGVKVESLTQTIKVEQSQSDRSKKAFHPV-LPVPIYTVDADKGFNFSNADDAFVCQKK 120
GVK+E++ Q I +EQSQSDRSK+ FHPV L +P
Sbjct: 398 KLNGVKLEAINQAISIEQSQSDRSKRPFHPVTLSLP------------------------ 433
Query: 121 NHFQDRIFMESVGAVKELCKVTQNLENRIEDETTSNNMRKKGKPNPDQRYFYLVVGLHAH 180
D++ +VG + ETTSNNMRKKGKPNPDQRYF LVV L
Sbjct: 434 ---PDQVTKVTVGRLH-------------FSETTSNNMRKKGKPNPDQRYFLLVVALQVQ 477
Query: 181 CSDSNHYPIVSHASERIIVRASNPGQFESDVELCWQRGSSPESVFHSGRVGINTERPDEA 240
+ Y + + ASERIIVRASNPGQFESD E+ WQRG P++VFH GR+GINTERPDEA
Sbjct: 478 AQNQT-YLVAAQASERIIVRASNPGQFESDSEVLWQRGQLPDTVFHHGRIGINTERPDEA 536
Query: 241 LVVHGNVKLTGHIIQPSDIRAKQHITKCNTKEQLRNVQQLNVVQFHYTPEFALHFGL 297
LVVHGNVK+ G ++ PSDIRAK+ + + +T EQL+ + Q+ +V +HY PEFA GL
Sbjct: 537 LVVHGNVKIMGSLMHPSDIRAKESVEEVDTTEQLKRISQMRLVHYHYKPEFASTVGL 593
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 47 VKTPEGMRKITSFHLHFYGVKVESLTQTIKVEQSQSDRSKKA--FHPVLPVPIYTVDADK 104
V T E +++I+ L Y K E T+ ++++ ++ A +LP +
Sbjct: 564 VDTTEQLKRISQMRLVHYHYKPE-FASTVGLDENAAETGVIAQEVQEILPEAVKESGDLV 622
Query: 105 GFNFSNADDAFVCQKKNHFQDRIFMESVGAVKELCKVTQNLENRIED 151
N ++ V K +RIFME+VGAVKELCK+T NLE RI++
Sbjct: 623 CANGETIENFLVVNK-----ERIFMENVGAVKELCKLTDNLETRIDE 664
>sp|F1N4M2|MRFL_BOVIN Myelin regulatory factor-like protein OS=Bos taurus GN=MYRFL PE=2
SV=1
Length = 896
Score = 283 bits (723), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 149/291 (51%), Positives = 187/291 (64%), Gaps = 40/291 (13%)
Query: 7 YTVDADKGFNFSNADDAFVCQKKNHFQITCHTQLQGDPQFVKTPEGMRKITSFHLHFYGV 66
Y V DKGFNFS AD+AFVCQKKNHFQIT H Q+ G P+FVKT G++ I F+L +GV
Sbjct: 239 YRVVTDKGFNFSPADEAFVCQKKNHFQITIHIQVWGSPKFVKTQMGLKPIEMFYLKPFGV 298
Query: 67 KVESLTQTIKVEQSQSDRSKKAFHPVLPVPIYTVDADKGFNFSNADDAFVCQKKNHFQDR 126
KVE+ Q I +EQSQ+DRSKK F+P+ K N D+
Sbjct: 299 KVEATNQIIAIEQSQADRSKKIFNPI--------------------------KINLLADQ 332
Query: 127 IFMESVGAVKELCKVTQNLENRIEDETTSNNMRKKGKPNPDQRYFYLVVGLHAHCSDSNH 186
+ ++G + ETT+NNMRKKGKPNPDQRYF LVVGL+A D
Sbjct: 333 VTKVTLGRLH-------------FSETTANNMRKKGKPNPDQRYFMLVVGLYAANQD-QF 378
Query: 187 YPIVSHASERIIVRASNPGQFESDVELCWQRGSSPESVFHSGRVGINTERPDEALVVHGN 246
Y + +H SERIIVRASNPGQFE+D++ WQRG PESV GRVGINT+ PDEALVV GN
Sbjct: 379 YLLSAHISERIIVRASNPGQFENDIDALWQRGQVPESVVCHGRVGINTDAPDEALVVCGN 438
Query: 247 VKLTGHIIQPSDIRAKQHITKCNTKEQLRNVQQLNVVQFHYTPEFALHFGL 297
+K+ G I+ PSD RAKQ++ + +T EQLR + Q+ +V++ Y PEFA G+
Sbjct: 439 MKVMGTIMHPSDSRAKQNVQEVDTNEQLRRIAQMRIVEYDYKPEFASAMGI 489
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 9/135 (6%)
Query: 14 GFNFSNADDAFV-CQKKNHFQITCH---TQLQGDPQFVKTPEGMRKITSFHLHFYGVKVE 69
G N D+A V C H ++ + + Q V T E +R+I + Y K E
Sbjct: 423 GINTDAPDEALVVCGNMKVMGTIMHPSDSRAKQNVQEVDTNEQLRRIAQMRIVEYDYKPE 482
Query: 70 SLTQTIKVEQSQSDRSKKAFHPVLPVPIYTVDADKGFNFSNADDAFVCQKKNHFQDRIFM 129
+ Q+ + +LP + V N ++ + K D+IFM
Sbjct: 483 FASAMGINTAHQTGMIAQEVREILPRAVREVGDVTCENGETLENFLMVDK-----DQIFM 537
Query: 130 ESVGAVKELCKVTQN 144
E+VGAVK+LCK+T N
Sbjct: 538 ENVGAVKQLCKLTNN 552
>sp|Q96LU7|MRFL_HUMAN Myelin regulatory factor-like protein OS=Homo sapiens GN=MYRFL PE=2
SV=2
Length = 910
Score = 276 bits (707), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 146/291 (50%), Positives = 185/291 (63%), Gaps = 40/291 (13%)
Query: 7 YTVDADKGFNFSNADDAFVCQKKNHFQITCHTQLQGDPQFVKTPEGMRKITSFHLHFYGV 66
Y V DKGFNFS AD+AFVCQKKNHFQIT H Q+ G P+FV+T G++ I F+L +G
Sbjct: 241 YRVVTDKGFNFSPADEAFVCQKKNHFQITIHIQVWGSPKFVETEMGLKPIEMFYLKVFGT 300
Query: 67 KVESLTQTIKVEQSQSDRSKKAFHPVLPVPIYTVDADKGFNFSNADDAFVCQKKNHFQDR 126
KVE+ Q I +EQSQ+DRSKK F+PV K + D+
Sbjct: 301 KVEATNQIIAIEQSQADRSKKIFNPV--------------------------KIDLLADQ 334
Query: 127 IFMESVGAVKELCKVTQNLENRIEDETTSNNMRKKGKPNPDQRYFYLVVGLHAHCSDSNH 186
+ ++G + ETT+NNMRKKGKPNPDQRYF LVVGL+A D
Sbjct: 335 VTKVTLGRLH-------------FSETTANNMRKKGKPNPDQRYFMLVVGLYAANQD-QF 380
Query: 187 YPIVSHASERIIVRASNPGQFESDVELCWQRGSSPESVFHSGRVGINTERPDEALVVHGN 246
Y + +H SERIIVRASNPGQFE+D + WQRG PES+ GRVGINT+ PDEALVV GN
Sbjct: 381 YLLSAHISERIIVRASNPGQFENDSDALWQRGQVPESIVCHGRVGINTDAPDEALVVCGN 440
Query: 247 VKLTGHIIQPSDIRAKQHITKCNTKEQLRNVQQLNVVQFHYTPEFALHFGL 297
+K+ G I+ PSD RAKQ+I + +T EQL+ + Q+ +V++ Y PEFA G+
Sbjct: 441 MKVMGTIMHPSDSRAKQNIQEVDTNEQLKRIAQMRIVEYDYKPEFASAMGI 491
Score = 39.3 bits (90), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 9/135 (6%)
Query: 14 GFNFSNADDAFV-CQKKNHFQITCH---TQLQGDPQFVKTPEGMRKITSFHLHFYGVKVE 69
G N D+A V C H ++ + + Q V T E +++I + Y K E
Sbjct: 425 GINTDAPDEALVVCGNMKVMGTIMHPSDSRAKQNIQEVDTNEQLKRIAQMRIVEYDYKPE 484
Query: 70 SLTQTIKVEQSQSDRSKKAFHPVLPVPIYTVDADKGFNFSNADDAFVCQKKNHFQDRIFM 129
+ Q+ + +LP + V N ++ + K D+IFM
Sbjct: 485 FASAMGINTAHQTGMIAQEVQEILPRAVREVGDVTCGNGETLENFLMVDK-----DQIFM 539
Query: 130 ESVGAVKELCKVTQN 144
E+VGAVK+LCK+T N
Sbjct: 540 ENVGAVKQLCKLTNN 554
>sp|Q3UN70|MRFL_MOUSE Myelin regulatory factor-like protein OS=Mus musculus GN=Myrfl PE=2
SV=1
Length = 904
Score = 275 bits (702), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 145/296 (48%), Positives = 184/296 (62%), Gaps = 40/296 (13%)
Query: 2 MPVPIYTVDADKGFNFSNADDAFVCQKKNHFQITCHTQLQGDPQFVKTPEGMRKITSFHL 61
+P Y V DKGF FS D+AFVCQKKNHFQIT H Q+ G P+FVKT G++ I F+L
Sbjct: 231 LPEVGYQVVTDKGFTFSPVDEAFVCQKKNHFQITVHIQVWGSPKFVKTQVGLKPIEKFYL 290
Query: 62 HFYGVKVESLTQTIKVEQSQSDRSKKAFHPVLPVPIYTVDADKGFNFSNADDAFVCQKKN 121
+G+KVE+ Q I +EQSQ+DRSKK F PV K +
Sbjct: 291 KAFGIKVEATNQVIAIEQSQADRSKKTFDPV--------------------------KID 324
Query: 122 HFQDRIFMESVGAVKELCKVTQNLENRIEDETTSNNMRKKGKPNPDQRYFYLVVGLHAHC 181
D++ ++G + ETT+NNMRKKGKPNPDQRYF LVVGL+A
Sbjct: 325 LLTDQVTKVTLGRLH-------------FSETTANNMRKKGKPNPDQRYFMLVVGLYAAN 371
Query: 182 SDSNHYPIVSHASERIIVRASNPGQFESDVELCWQRGSSPESVFHSGRVGINTERPDEAL 241
D Y + +H SERIIVRASNPGQFE+D + WQRG PES+ GRVGINT+ PDEAL
Sbjct: 372 QD-QFYLLAAHISERIIVRASNPGQFENDSDALWQRGQVPESIVCHGRVGINTDTPDEAL 430
Query: 242 VVHGNVKLTGHIIQPSDIRAKQHITKCNTKEQLRNVQQLNVVQFHYTPEFALHFGL 297
VV GN+K+ G ++ PSD R K++I + +T EQLR + Q+ +VQ+ Y PEFA G+
Sbjct: 431 VVCGNMKVMGTVMHPSDSRVKENIQEVDTNEQLRRIAQMRIVQYDYKPEFASAMGI 486
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 9/135 (6%)
Query: 14 GFNFSNADDAFV-CQKKNHFQITCH---TQLQGDPQFVKTPEGMRKITSFHLHFYGVKVE 69
G N D+A V C H ++++ + Q V T E +R+I + Y K E
Sbjct: 420 GINTDTPDEALVVCGNMKVMGTVMHPSDSRVKENIQEVDTNEQLRRIAQMRIVQYDYKPE 479
Query: 70 SLTQTIKVEQSQSDRSKKAFHPVLPVPIYTVDADKGFNFSNADDAFVCQKKNHFQDRIFM 129
+ Q+ + +LP + V G N ++ + K D+IFM
Sbjct: 480 FASAMGINTAHQTGMIAQEVQEILPRAVREVGDVTGGNGETLENFLMVDK-----DQIFM 534
Query: 130 ESVGAVKELCKVTQN 144
E+VGAVK+LCK+T N
Sbjct: 535 ENVGAVKQLCKLTNN 549
>sp|Q1ZXA9|Y9218_DICDI Uncharacterized protein DDB_G0292186 OS=Dictyostelium discoideum
GN=DDB_G0292186 PE=4 SV=1
Length = 1133
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 210 DVELCWQRGSSPESVFHSGRVGINTERPDEALVVHGNVKLTGHIIQPSDIRAKQHITKCN 269
D + W + S +FH G VG+N+E P EAL V+GNV ++G + QPSD R K+++ N
Sbjct: 863 DKNIKWAQ-SPNGGLFHFGNVGVNSENPQEALSVNGNVSISGMMYQPSDKRVKENVKPVN 921
Query: 270 TKEQLRNVQQLNVVQFHYTPEFA 292
+K+QL N+ +L + + T E+
Sbjct: 922 SKDQLSNIMKLKIYDYQLTDEWV 944
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 89/208 (42%), Gaps = 47/208 (22%)
Query: 5 PIYTVDADKGFNFSNADDAFVCQKKNHFQIT-----CHTQLQGDPQFVKTPEGMRKITSF 59
P V A+KGF+FS D++++ ++NHFQ+ C L+ P + + + F
Sbjct: 133 PQLNVSAEKGFSFSEVDNSWIYYRRNHFQLGIGVSHCFQFLESSPPLISLNGSIYPVDDF 192
Query: 60 HLHFYGVKVE---SLTQTIKVEQSQSDRSKKAFHPVLPVPIYTVDADKGFNFSNADDAFV 116
+L GVK ++ + ++VE Q++ ++ LP P+ FS V
Sbjct: 193 YLCIRGVKNGPDVNINEEVEVELYQTNSKREKGEEKLPPPVL-------MTFSTN----V 241
Query: 117 CQKKNHFQDRIFMESVGAVKELCKVTQNLENRIEDETTSNNMRKKGKPNPDQRYFYLVVG 176
+ HF+ + T+NN RK PNP Q +F LV+
Sbjct: 242 TIPRLHFR---------------------------KATANNARKHKLPNPQQEFFRLVLT 274
Query: 177 LHAHCSDSNHYPIVSHASERIIVRASNP 204
+ A + S + I S S+ +IVR +P
Sbjct: 275 VVAR-AQSRDFCITSMISDPLIVRTGHP 301
>sp|Q54PT9|MRFA_DICDI Myelin gene regulatory factor-like A OS=Dictyostelium discoideum
GN=mrfA PE=1 SV=1
Length = 932
Score = 59.3 bits (142), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 215 WQRGSSPESVFHSGRVGINTERPDEALVVHGNVKLTGHIIQPSDIRAKQHITKCNTKEQL 274
W G + +S+ ++G+VGIN E P AL V G + + + PSD+R K + ++K L
Sbjct: 725 WNSGDTEKSIVYNGKVGINVENPAYALSVQGTIYASEGVYHPSDLRIKYDLKSIDSKSNL 784
Query: 275 RNVQQLNVVQFHYTPEF 291
NV ++ + + Y P++
Sbjct: 785 DNVNRMKLYDYKYNPQW 801
Score = 48.9 bits (115), Expect = 5e-05, Method: Composition-based stats.
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 40/214 (18%)
Query: 2 MPVPIYTVDADKGFNFSNADDAFVCQKKNHFQI---TCHTQLQGDPQFVKTPEGMRKITS 58
MPVP+ + A KGF++ ++ ++NHFQ+ + +L + Q+ + +S
Sbjct: 351 MPVPLLNIMASKGFSYIGGQ--WIYCRRNHFQLDITAVYPKLFQETQYGHNGVTLSNSSS 408
Query: 59 F--------HLHFYGVK--VESLTQTIKVEQSQSDRSKKAFHPVLPVPIYTVDADKGFNF 108
++ GVK + LT TIK ++++D S++ V ++ ++ +
Sbjct: 409 SVDPTQTPSYMLISGVKTPINGLTLTIKGIKNRADMSQQESE----VELFQTNSKR---- 460
Query: 109 SNADDAFVCQKKNHFQDRIFMESVGAVKELCKVTQNLENRIEDETTSNNMRKKGKPNPDQ 168
+K+ + G++ + Q L R + T NN R+ G+PNP Q
Sbjct: 461 ---------EKQGEHAPKPVAIQFGSLVSI----QRLHFR---KATLNNARRHGQPNPHQ 504
Query: 169 RYFYLVVGLHAHCSDSNHYPIVSHASERIIVRAS 202
+ LVV L+ C Y IVS+ S +IVR +
Sbjct: 505 EFNQLVVSLYGRCM-GQEYCIVSYVSPALIVRTA 537
>sp|Q54B29|Y3934_DICDI Uncharacterized membrane protein DDB_G0293934 OS=Dictyostelium
discoideum GN=DDB_G0293934 PE=4 SV=1
Length = 1713
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 222 ESVFHSGRVGINTERPDEALVVHGNVKLTGHIIQPSDIRAKQHITKCNT 270
E ++ + +VGINT P +AL V+GN+ +TG + +PSD R K +I NT
Sbjct: 1205 EVIYTNNKVGINTTTPTQALAVNGNILVTGELFKPSDQRIKSNIRLDNT 1253
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 10/64 (15%)
Query: 154 TSNNMR-KKGKPNPDQRYFYLVVGLHA---------HCSDSNHYPIVSHASERIIVRASN 203
TSNN R +PNP+Q++F +V+ L+A + + YPI S S +IVR N
Sbjct: 758 TSNNARVHPDQPNPNQQFFRVVITLNAVIDKNFENQNFTTPQFYPIQSKISPPMIVRGQN 817
Query: 204 PGQF 207
PG+F
Sbjct: 818 PGRF 821
>sp|Q2GB76|MURA_NOVAD UDP-N-acetylglucosamine 1-carboxyvinyltransferase
OS=Novosphingobium aromaticivorans (strain DSM 12444)
GN=murA PE=3 SV=1
Length = 427
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 55/136 (40%), Gaps = 33/136 (24%)
Query: 148 RIED-ETTSNNMRKKG-KPNPDQRYFYLVVGLHAHCSDSNHYPIVSHASERIIVRASNPG 205
RIED E T +R G P + Y+ +D P+ I A PG
Sbjct: 264 RIEDMEATVQALRDAGVHVEPRKGGIYV-------AADGPLKPVT-------ISTAPYPG 309
Query: 206 QFESDVE------LCWQRGSS--PESVFHS--------GRVGINTERPDEALVVHGNVKL 249
F +D++ LC GSS E++F + R+G E VVHG KL
Sbjct: 310 -FATDMQAQLMAMLCLAHGSSVLTETIFENRYMHVPELNRMGARIETKGRTAVVHGVEKL 368
Query: 250 TGHIIQPSDIRAKQHI 265
TG + +D+RA +
Sbjct: 369 TGAEVMATDLRASMSL 384
>sp|P41413|PCSK5_RAT Proprotein convertase subtilisin/kexin type 5 OS=Rattus norvegicus
GN=Pcsk5 PE=2 SV=3
Length = 1809
Score = 33.9 bits (76), Expect = 1.7, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 180 HCSDSNHYPIVSHASERIIVRASNPGQFESDVELCWQRGSSPESVFHS 227
HC+D HY + RI V + PG F +D + C + + ES F S
Sbjct: 654 HCTDCLHYHYKLKNNTRICVSSCPPGHFHADKKRCRKCAPNCESCFGS 701
>sp|Q31DJ4|QUEF_THICR NADPH-dependent 7-cyano-7-deazaguanine reductase OS=Thiomicrospira
crunogena (strain XCL-2) GN=queF PE=3 SV=1
Length = 277
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 16/109 (14%)
Query: 158 MRKKGKPNPDQRYFYLVVGLHAHCSDSNHYPIVSHASERIIVRASNPGQFESD--VELCW 215
+ KGKP VG + ++ S ++ + + N +FES+ V CW
Sbjct: 63 LNLKGKPQ---------VGWAEFVFSAEAPNLIESKSFKLYLNSFNGTRFESEDAVIACW 113
Query: 216 QRGSSPESVFHSGRVGINTERPDEALVVHGNVKLTGHIIQPSDIRAKQH 264
Q S VG+ R DE++V+ GN L GH + DI + +
Sbjct: 114 QNDLSQAC---GKPVGVRFYRLDESIVLQGN--LPGHCLDALDIEVEDY 157
>sp|Q04592|PCSK5_MOUSE Proprotein convertase subtilisin/kexin type 5 OS=Mus musculus
GN=Pcsk5 PE=1 SV=3
Length = 1877
Score = 33.1 bits (74), Expect = 2.6, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 180 HCSDSNHYPIVSHASERIIVRASNPGQFESDVELCWQRGSSPESVFHS 227
HCSD HY + RI V + PG + +D + C + + ES F S
Sbjct: 654 HCSDCLHYYYKLKNNTRICVSSCPPGHYHADKKRCRKCAPNCESCFGS 701
>sp|P52476|AL1B1_BOVIN Aldehyde dehydrogenase X, mitochondrial (Fragment) OS=Bos taurus
GN=ALDH1B1 PE=2 SV=2
Length = 511
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 2 MPVPIYTVDADKGFNFSNADDAFVCQKKNHFQITCHTQLQGDPQFVKTPEGMRKITSFHL 61
+ ++T D DK F+ A + +TCHT L G K P R++ L
Sbjct: 438 LAAAVFTQDLDKAMYFTQALQTGTVWVNTYNVVTCHTPLGG----FKEPGNGRELGEDGL 493
Query: 62 HFYGVKVESLTQTIKVEQSQS 82
Y E T TIKV Q S
Sbjct: 494 KAY---TEVKTVTIKVPQKNS 511
>sp|Q92824|PCSK5_HUMAN Proprotein convertase subtilisin/kexin type 5 OS=Homo sapiens
GN=PCSK5 PE=1 SV=4
Length = 1860
Score = 31.6 bits (70), Expect = 6.8, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 180 HCSDSNHYPIVSHASERIIVRASNPGQFESDVELCWQRGSSPESVFHS 227
HC+D HY + RI V + PG + +D + C + + ES F S
Sbjct: 652 HCNDCLHYYYKLKNNTRICVSSCPPGHYHADKKRCRKCAPNCESCFGS 699
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,447,072
Number of Sequences: 539616
Number of extensions: 4736468
Number of successful extensions: 9367
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9318
Number of HSP's gapped (non-prelim): 49
length of query: 299
length of database: 191,569,459
effective HSP length: 117
effective length of query: 182
effective length of database: 128,434,387
effective search space: 23375058434
effective search space used: 23375058434
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)