Query psy17827
Match_columns 299
No_of_seqs 146 out of 175
Neff 5.2
Searched_HMMs 29240
Date Sat Aug 17 00:00:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mnn_A NDT80 protein; IG fold, 100.0 3.7E-50 1.3E-54 383.2 13.7 199 3-212 87-336 (340)
2 3gw6_A Endo-N-acetylneuraminid 95.0 0.0084 2.9E-07 55.6 2.0 41 253-294 118-158 (275)
3 3mln_A Transcription factor CO 39.6 30 0.001 30.6 4.3 32 145-183 26-57 (224)
4 3lyr_A Transcription factor CO 38.6 31 0.001 31.0 4.3 32 145-183 42-73 (243)
5 3gud_A NECK appendage protein; 37.8 9.3 0.00032 31.6 0.8 29 257-286 1-31 (129)
6 3mlp_A Transcription factor CO 24.6 66 0.0023 30.9 4.3 31 145-182 26-56 (402)
7 2llh_A Nucleophosmin; nucleola 28.3 18 0.00062 27.2 0.0 28 9-36 33-60 (74)
8 1m5a_B Insulin B chain; alpha 20.5 31 0.0011 21.6 0.7 10 11-20 20-29 (30)
9 4sgb_I Potato inhibitor, PCI-1 18.3 59 0.002 22.6 1.8 17 12-28 10-26 (51)
10 2dcv_A Tachystatin-B1; antimic 13.7 63 0.0021 21.7 1.0 7 25-31 36-42 (42)
No 1
>1mnn_A NDT80 protein; IG fold, protein_DNA complex, transcription-DNA complex; 1.40A {Saccharomyces cerevisiae} SCOP: b.2.5.7 PDB: 2evg_A 2euv_A 2euw_A 2etw_A 2eux_A 2evf_A 2euz_A 2evh_A 2evi_A 2evj_A 1mn4_A 1m6u_A 1m7u_A
Probab=100.00 E-value=3.7e-50 Score=383.19 Aligned_cols=199 Identities=16% Similarity=0.123 Sum_probs=136.0
Q ss_pred CCCeEEEEcCCCceeecCCCceEEeeeceeEEEEEEEecCCC--------ceEecC---CC-eeeeeEEEEEEEEEEEcC
Q psy17827 3 PVPIYTVDADKGFNFSNADDAFVCQKKNHFQITCHTQLQGDP--------QFVKTP---EG-MRKITSFHLHFYGVKVES 70 (299)
Q Consensus 3 ~~p~~~~~~dKGF~~s~~d~~~tCyRrN~Fqvt~~~~l~~~p--------~~v~t~---~g-~~~I~~f~l~i~av~~~~ 70 (299)
..|.++++||||||+ +|++|||||||||||+|+|+|.+.. .|++++ .| ..+|.+|+|+|+|++++
T Consensus 87 v~p~i~aridkGFf~--~d~~WtcYRRNYFqvs~Sf~l~~~~~~~~l~~~~~i~~~~~~~~~~~~I~~Fal~IsA~~s~- 163 (340)
T 1mnn_A 87 LDLRIIPRIDRGFDH--IDEEWVGYKRNYFTLVSTFETANCDLDTFLKSSFDLLVEDSSVEGRLRVQYFAIKIKAKNDD- 163 (340)
T ss_dssp CCCEEEEEEEESCEE--ETTEEEEETTSCEEEEEEEECTTCCHHHHHHSCEEECC------CCEECCEEEEEEEEEETT-
T ss_pred eceEEEEEEccCeec--cCCeEEEEccccEEEEEEEEeCCCCCchhcccceEEEecccCCCceEEEEEEEEEEEEEEcC-
Confidence 468999999999988 6899999999999999999997532 278774 34 78999999999999865
Q ss_pred CceeEEeeeccccCCCCccC-CCCcCCcceecCCCCCc---cCCCCchhhccccC-------------Ccccceeecccc
Q psy17827 71 LTQTIKVEQSQSDRSKKAFH-PVLPVPIYTVDADKGFN---FSNADDAFVCQKKN-------------HFQDRIFMESVG 133 (299)
Q Consensus 71 ~~qtIelvQhtpkRdK~p~~-p~~~~P~~~~~~~~G~~---~S~~d~a~~~Q~~n-------------hfq~~~~~~~~G 133 (299)
.+..|+|+||||||||+|.. |+..+..+. .++.... .|+..+..-.++.+ .++....+..+.
T Consensus 164 d~~~VeLvQhTpKRDKgPq~~P~~~~l~P~-~lP~h~~~~~asn~~n~~ki~~~~~~f~~~r~~~~~~~~~~~~~l~~yp 242 (340)
T 1mnn_A 164 DDTEINLVQHTAKRDKGPQFCPSVCPLVPS-PLPKHQTIREASNVRNITKMKKYDSTFYLHRDHVNYEEYGVDSLLFSYP 242 (340)
T ss_dssp TCCEECEEEECTTGGGSCEECCCCEEBCCC-CCCCHHHHHHTTTCCCHHHHHHHHHHHEEEGGGSCGGGSCTTCGGGGSS
T ss_pred CCCeEEEEecCccccCCCcCCCccccccCC-CCCccccccccccccccccccccCcccccccccccccccccccccccCC
Confidence 56789999999999999975 333221110 1111000 01110000000000 011000011122
Q ss_pred ccccceeeecccccceeccccccccccCCCCCCCCceeEEEEEeeeeeCCCC----------------------eEEEEE
Q psy17827 134 AVKELCKVTQNLENRIEDETTSNNMRKKGKPNPDQRYFYLVVGLHAHCSDSN----------------------HYPIVS 191 (299)
Q Consensus 134 ~~~~~t~~t~~~eRLqF~~aTaNNgrr~~~p~p~Qqyf~LvV~L~A~~~~~~----------------------~~~Ia~ 191 (299)
+....+.+|| |||||+ |||||||+ .++|+||+|+|+|+|.+++|. +++||+
T Consensus 243 ~~~i~~~~t~--eRIQF~--TANNgkR~---~qqq~~F~L~V~L~A~v~~g~~~~~~~~~~~~~~~~~~g~~~~~I~IA~ 315 (340)
T 1mnn_A 243 EDSIQKVARY--ERVQFA--SSISVKKP---SQQNKHFSLHVILGAVVDPDTFHGENPGIPYDELALKNGSKGMFVYLQE 315 (340)
T ss_dssp SSEEESSEEE--EEEEEC--TTCCCBCT---TSCBCCEEEEEEEEEEECCC-------CCCEEEEECSSSSEEEEEEEEE
T ss_pred ccccceeEEE--EEEEEe--eccccCCc---ccccceEEEEEEEEEEeCCCccccccccccccccccccCCCCceEEEEE
Confidence 2223344555 799999 89999983 445559999999999998753 789999
Q ss_pred eeccceEeecCCCCCCCCCcc
Q psy17827 192 HASERIIVRASNPGQFESDVE 212 (299)
Q Consensus 192 ~~S~~~IVRgrsPg~f~s~~~ 212 (299)
..|+||||||||||||+++..
T Consensus 316 ~~S~P~IVRGRSP~nY~s~rr 336 (340)
T 1mnn_A 316 MKTPPLIIRGRSPSNYASSQR 336 (340)
T ss_dssp EECSCEEEECSCGGGSGGGC-
T ss_pred ccCCCEEEeCCCcccccccCC
Confidence 999999999999999999764
No 2
>3gw6_A Endo-N-acetylneuraminidase; chaperone, glycosidase, hydrolase; HET: TAM; 2.60A {Enterobacteria phage K1F}
Probab=94.99 E-value=0.0084 Score=55.63 Aligned_cols=41 Identities=10% Similarity=0.105 Sum_probs=34.7
Q ss_pred eecCCchhhhccCccCChHHHHhhcceeEEEEEeechhHHhh
Q psy17827 253 IIQPSDIRAKQHITKCNTKEQLRNVQQLNVVQFHYTPEFALH 294 (299)
Q Consensus 253 ~~~pSD~R~K~~i~~~dt~~~l~~i~~~r~v~y~~~~e~a~~ 294 (299)
.+.+||+|+|.+|++++..+ |+....|+.+.|+|+...+.+
T Consensus 118 tInTSDaRlKtdI~~i~d~~-L~A~~~L~p~~Ykwkdav~~K 158 (275)
T 3gw6_A 118 PIVTANGERKTEPVVFDDAF-LDAWGDVHYIMYQWLDAVQLK 158 (275)
T ss_dssp CEEECTTCCBCCCBCCCHHH-HHHHTTCCCEEECBHHHHHHH
T ss_pred CcccCcHhhcCCCccCCHHH-HHHHhcCCcEEEEeccccccc
Confidence 34799999999999998754 888889999999999876643
No 3
>3mln_A Transcription factor COE1; transcription factor, pseudo-IG-fold, Zn-finger, Zn-knuckle; HET: DNA; 2.40A {Mus musculus} PDB: 3mlo_A*
Probab=39.57 E-value=30 Score=30.59 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=28.2
Q ss_pred cccceeccccccccccCCCCCCCCceeEEEEEeeeeeCC
Q psy17827 145 LENRIEDETTSNNMRKKGKPNPDQRYFYLVVGLHAHCSD 183 (299)
Q Consensus 145 ~eRLqF~~aTaNNgrr~~~p~p~Qqyf~LvV~L~A~~~~ 183 (299)
+.|.||.+..-+|-|| -.|||+|+.||..-++
T Consensus 26 l~rahfEkqPPsNlRK-------SNFFhFVlalyDr~gq 57 (224)
T 3mln_A 26 LARAHFEKQPPSNLRK-------SNFFHFVLALYDRQGQ 57 (224)
T ss_dssp EEEEEEEECCCSEEET-------TSEEEEEEEEEETTSC
T ss_pred ceeheeccCCCccccc-------cccceeeeeecccCCC
Confidence 3499999999999998 7899999999987654
No 4
>3lyr_A Transcription factor COE1; immunoglobulin (IG)-like domain, structural genomics, struct genomics consortium, SGC, activator, developmental protein; 2.51A {Homo sapiens}
Probab=38.65 E-value=31 Score=30.95 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=28.2
Q ss_pred cccceeccccccccccCCCCCCCCceeEEEEEeeeeeCC
Q psy17827 145 LENRIEDETTSNNMRKKGKPNPDQRYFYLVVGLHAHCSD 183 (299)
Q Consensus 145 ~eRLqF~~aTaNNgrr~~~p~p~Qqyf~LvV~L~A~~~~ 183 (299)
+.|.||.+..-+|-|| -.|||+|+.||..-++
T Consensus 42 l~rahfekqPpsnlrK-------snFFhfvlalyd~~~q 73 (243)
T 3lyr_A 42 LARAHFEKQPPSNLRK-------SNFFHFVLALYDRQGQ 73 (243)
T ss_dssp EEEEEEEECCCSEEET-------TSEEEEEEEEEETTSC
T ss_pred cchhhcccCCcchhhh-------cccceeeeeehhcCCC
Confidence 3499999999999998 7899999999987654
No 5
>3gud_A NECK appendage protein; 3-helix bundle, chaperon, chaperone; HET: PEG; 2.20A {Bacillus phage ga-1}
Probab=37.85 E-value=9.3 Score=31.62 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=20.4
Q ss_pred CchhhhccCccCChHHH--HhhcceeEEEEEe
Q psy17827 257 SDIRAKQHITKCNTKEQ--LRNVQQLNVVQFH 286 (299)
Q Consensus 257 SD~R~K~~i~~~dt~~~--l~~i~~~r~v~y~ 286 (299)
||.|+|++|.+++.++. ...| .+..+.|+
T Consensus 1 SDar~K~di~~i~da~l~Aw~~v-~~~~yk~~ 31 (129)
T 3gud_A 1 SDERHKTDIAPISDKVLDAWEKV-KFYQYKFK 31 (129)
T ss_dssp --CCCCCSCCSCCHHHHHHHTTC-CCEEECCH
T ss_pred CcccccCCCCCCCHHHHHHHHcC-CceEEEEc
Confidence 89999999999999875 5555 45555543
No 6
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=24.63 E-value=66 Score=30.95 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=27.5
Q ss_pred cccceeccccccccccCCCCCCCCceeEEEEEeeeeeC
Q psy17827 145 LENRIEDETTSNNMRKKGKPNPDQRYFYLVVGLHAHCS 182 (299)
Q Consensus 145 ~eRLqF~~aTaNNgrr~~~p~p~Qqyf~LvV~L~A~~~ 182 (299)
+.|.||.+-.-+|-|| -.|||+|+.||..-+
T Consensus 26 l~rahfekqpp~nlrk-------snffhfvlalyd~~~ 56 (402)
T 3mlp_A 26 LARAHFEKQPPSNLRK-------SNFFHFVLALYDRQG 56 (402)
T ss_dssp EEEEEEEECCCSEEET-------TSEEEEEEEEEETTC
T ss_pred cchheeccCCchhhhh-------cccceeEeeecccCC
Confidence 3499999999999998 789999999998655
No 7
>2llh_A Nucleophosmin; nucleolar, chaperone, oncoprotein, DNA binding protein; NMR {Homo sapiens} PDB: 2vxd_A
Probab=28.30 E-value=18 Score=27.19 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=24.1
Q ss_pred EEcCCCceeecCCCceEEeeeceeEEEE
Q psy17827 9 VDADKGFNFSNADDAFVCQKKNHFQITC 36 (299)
Q Consensus 9 ~~~dKGF~~s~~d~~~tCyRrN~Fqvt~ 36 (299)
+.|+||=.+--+...|..|=||.|+++-
T Consensus 33 asieKg~slPKvE~KF~NyvKn~F~mtd 60 (74)
T 2llh_A 33 ASIEKGGSLPKVEAKFINYVKNCFRMTD 60 (74)
Confidence 3678988888888999999999999864
No 8
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=20.46 E-value=31 Score=21.65 Aligned_cols=10 Identities=20% Similarity=0.723 Sum_probs=7.8
Q ss_pred cCCCceeecC
Q psy17827 11 ADKGFNFSNA 20 (299)
Q Consensus 11 ~dKGF~~s~~ 20 (299)
-|+||+|+..
T Consensus 20 gdRGF~~~p~ 29 (30)
T 1m5a_B 20 GERGFFYTPK 29 (30)
T ss_dssp GGGCEEECCC
T ss_pred ccCccccCCC
Confidence 4899999763
No 9
>4sgb_I Potato inhibitor, PCI-1; complex(serine proteinase-inhibitor); 2.10A {Streptomyces griseus} SCOP: g.69.1.1 PDB: 2jzm_A 1tih_A 1qh2_B
Probab=18.32 E-value=59 Score=22.62 Aligned_cols=17 Identities=41% Similarity=0.851 Sum_probs=14.2
Q ss_pred CCCceeecCCCceEEee
Q psy17827 12 DKGFNFSNADDAFVCQK 28 (299)
Q Consensus 12 dKGF~~s~~d~~~tCyR 28 (299)
-||=+|+.+|+.|+|.-
T Consensus 10 ~KGC~Yf~~~GtfiCeG 26 (51)
T 4sgb_I 10 YKGCNYYSANGAFICEG 26 (51)
T ss_dssp BTTCEEECTTCCEEEEC
T ss_pred cccceeecCCCCEEecc
Confidence 48889999999998863
No 10
>2dcv_A Tachystatin-B1; antimicrobial, cystine-knot, antimicrobial protein; NMR {Tachypleus tridentatus} PDB: 2dcw_A
Probab=13.74 E-value=63 Score=21.69 Aligned_cols=7 Identities=29% Similarity=0.989 Sum_probs=6.0
Q ss_pred EEeeece
Q psy17827 25 VCQKKNH 31 (299)
Q Consensus 25 tCyRrN~ 31 (299)
+|+|||.
T Consensus 36 ~c~r~~~ 42 (42)
T 2dcv_A 36 TCSRRNF 42 (42)
T ss_dssp EEEECCC
T ss_pred eeeeccC
Confidence 8999984
Done!