RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17827
(299 letters)
>gnl|CDD|203212 pfam05224, NDT80_PhoG, NDT80 / PhoG like DNA-binding family. This
family includes the DNA-binding region of NDT80 as well
as PhoG and its homologues. The family contains VIB-1.
VIB-1 is thought to be a regulator of conidiation in
Neurospora crassa and shares a region of similarity to
PHOG, a possible phosphate nonrepressible acid
phosphatase in Aspergillus nidulans. It has been found
that vib-1 is not the structural gene for nonrepressible
acid phosphatase, but rather may regulate nonrepressible
acid phosphatase activity.
Length = 172
Score = 96.3 bits (240), Expect = 3e-24
Identities = 47/203 (23%), Positives = 72/203 (35%), Gaps = 50/203 (24%)
Query: 23 AFVCQKKNHFQITCHTQLQGD--PQFVK----TPEGMRKITSFHLHFYGVKVESLTQTIK 76
+VC ++N+FQ+ L G P+FVK I F L K + I+
Sbjct: 1 EWVCYRRNYFQVVASFTLPGFSPPKFVKHVFTGSGERVPIKYFALKISATKNSADNSPIE 60
Query: 77 VEQ-SQSDRSKKAFHPVL------PVPIYTVDADKGFNFSNADDA----FVCQKKNHFQD 125
+ Q + F PV+ P+P + + + +N+ V ++ F
Sbjct: 61 LVQHTAKRDKGPQFAPVIVPLVPGPLPPHQLIREASNVRNNSKMDRIKTVVTVERLQFS- 119
Query: 126 RIFMESVGAVKELCKVTQNLENRIEDETTSNNMRKKGKPNPDQRYFYLVVGLHAHCSDSN 185
T+NN R+KG Q++F LVV L A + S
Sbjct: 120 --------------------------SATANNGRRKGL----QQFFVLVVKLLAIHTLSG 149
Query: 186 H--YPIVSHASERIIVRASNPGQ 206
I S IIVR +PG
Sbjct: 150 GTKILIAELVSPPIIVRGRSPGN 172
>gnl|CDD|206058 pfam13887, MRF_C1, Myelin gene regulatory factor -C-terminal domain
1. This domain is found just downstream of
Peptidase_S74, pfam13884. The function is not known.
Length = 36
Score = 55.9 bits (135), Expect = 7e-11
Identities = 21/28 (75%), Positives = 26/28 (92%)
Query: 124 QDRIFMESVGAVKELCKVTQNLENRIED 151
+DRIFME+VGAVKELCK+T NLE RI++
Sbjct: 5 KDRIFMENVGAVKELCKLTGNLETRIDE 32
>gnl|CDD|222434 pfam13884, Peptidase_S74, Chaperone of endosialidase. This is the
very C-terminal, chaperone, domain of the bacteriophage
protein endosialidase. It releases itself, via the
serine-lysine dyad at the N-terminus, from the remainder
of the end-tail-spike. Cleavage occurs after the
threonine which is the final residue of the
End-tail-spike family, pfam12219. The endosialidase
protein forms homotrimeric molecules in bacteriophages.
The catalytic dyad allows this portion of the molecule
to be cleaved from the more N-terminal region such that
the latter can fold and presumably bind to DNA.
Length = 54
Score = 37.2 bits (87), Expect = 5e-04
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 257 SDIRAKQHITKCNTKEQLRNVQQLNVVQFHYTPEFA---LHFGL 297
SD R K +I + L ++QL V + Y H G+
Sbjct: 1 SDRRLKTNIKPIDEAA-LDKIKQLEPVTYDYKEGEDEARRHIGV 43
>gnl|CDD|240359 PTZ00324, PTZ00324, glutamate dehydrogenase 2; Provisional.
Length = 1002
Score = 29.0 bits (65), Expect = 3.9
Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 3/97 (3%)
Query: 62 HFYGVKVESLTQTIKVEQSQSDRSKKA-FHPVLPVPIYT-VDADKGFNFSNADDAFVCQK 119
Y + LT + S DR+ +LP T + ++ + A
Sbjct: 274 QVYTFFIRGLTADDNPDLSIEDRASLIRLLYILPFSSLTRLHEERVLSCEETAYADAAVI 333
Query: 120 -KNHFQDRIFMESVGAVKELCKVTQNLENRIEDETTS 155
HF + ++ L N +R+ + T
Sbjct: 334 FAFHFTPSPTTDDYRHLEALLAKEPNGVSRLNNLRTR 370
>gnl|CDD|220635 pfam10221, DUF2151, Cell cycle and development regulator. This is
a set of proteins conserved from worms to humans. The
proteins are a PAN GU kinase substrate, Mat89Bb,
essential for S-M cycles of early Drosophila
embryogenesis, Xenopus embryonic cell cycles and
morphogenesis, and cell division in cultured mammalian
cells.
Length = 692
Score = 28.7 bits (64), Expect = 4.6
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 12/50 (24%)
Query: 56 ITSFHL---HFYGVKVESLTQTIKVEQSQSDRSKKAFHPVLPVPIYTVDA 102
ITS HL + Y ES+ S RS K P+L +++V A
Sbjct: 197 ITSCHLVIVNIYPAGEESMV---------STRSLKEISPLLKSEVHSVKA 237
>gnl|CDD|204914 pfam12422, Condensin2nSMC, Condensin II non structural
maintenance of chromosomes subunit. This domain family
is found in eukaryotes, and is approximately 150 amino
acids in length. This family is part of a non-SMC
subunit of condensin II which is involved in
maintenance of the structural integrity of chromosomes.
Condensin II is made up of SMC (structural maintenance
of chromosomes) and non-SMC subunits. The non-SMC
subunits bind to the catalytic ends of the SMC subunit
dimer. The condensin holocomplex is able to introduce
superhelical tension into DNA in an ATP hydrolysis-
dependent manner, resulting in the formation of
positive supercoils in the presence of topoisomerase I
and of positive knots in the presence of topoisomerase
II.
Length = 152
Score = 26.9 bits (60), Expect = 9.2
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 42 GDPQFVKTPEGMRKITSFHLHFYGVKVESLTQTIK 76
P F+KT EG +K SF + ++ + IK
Sbjct: 6 VPPAFIKTEEG-KKFLSFLFSLSSILIKEIHTLIK 39
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.403
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,959,811
Number of extensions: 1372441
Number of successful extensions: 923
Number of sequences better than 10.0: 1
Number of HSP's gapped: 919
Number of HSP's successfully gapped: 11
Length of query: 299
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 203
Effective length of database: 6,679,618
Effective search space: 1355962454
Effective search space used: 1355962454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)