RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17827
         (299 letters)



>d1mnna_ b.2.5.7 (A:) DNA-binding domain from NDT80 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 303

 Score =  122 bits (306), Expect = 2e-33
 Identities = 33/246 (13%), Positives = 68/246 (27%), Gaps = 52/246 (21%)

Query: 11  ADKGFNFSNADDAFVCQKKNHFQITCHTQLQGDPQFVKTPEG------------MRKITS 58
            D+GF+    D+ +V  K+N+F +    +                           ++  
Sbjct: 63  IDRGFDH--IDEEWVGYKRNYFTLVSTFETANCDLDTFLKSSFDLLVEDSSVEGRLRVQY 120

Query: 59  FHLHFYGVKVESLTQTIKVEQSQSDRSKKAFHPVLPVPIYTVDADKGFNFSNADDAFVCQ 118
           F +       +  T+   V+ +        F P +  P+      K      A +     
Sbjct: 121 FAIKIKAKNDDDDTEINLVQHTAKRDKGPQFCPSV-CPLVPSPLPKHQTIREASNVRNIT 179

Query: 119 KKNHFQDRIFMESVGAVKELCKVTQNLENRIEDE------------TTSNNMRKKGKPNP 166
           K   +    ++       E   V   L +  ED              +S +++K    + 
Sbjct: 180 KMKKYDSTFYLHRDHVNYEEYGVDSLLFSYPEDSIQKVARYERVQFASSISVKKP---SQ 236

Query: 167 DQRYFYLVVGLHAHCSDSNH----------------------YPIVSHASERIIVRASNP 204
             ++F L V L A                               +    +  +I+R  +P
Sbjct: 237 QNKHFSLHVILGAVVDPDTFHGENPGIPYDELALKNGSKGMFVYLQEMKTPPLIIRGRSP 296

Query: 205 GQFESD 210
             + S 
Sbjct: 297 SNYASS 302


>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl
           transferase (EPT, MurA, MurZ) {Enterobacter cloacae
           [TaxId: 550]}
          Length = 419

 Score = 28.3 bits (62), Expect = 1.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 229 RVGINTERPDEALVVHGNVKLTGHIIQPSDIRA 261
           R+G + E     ++ HG  KL+G  +  +D+RA
Sbjct: 340 RMGAHAEIESNTVICHGVEKLSGAQVMATDLRA 372


>d1gr3a_ b.22.1.1 (A:) Collagen NC1 trimerisation domain {Human
           (Homo sapiens), isoform X [TaxId: 9606]}
          Length = 132

 Score = 26.5 bits (58), Expect = 2.3
 Identities = 9/83 (10%), Positives = 34/83 (40%)

Query: 2   MPVPIYTVDADKGFNFSNADDAFVCQKKNHFQITCHTQLQGDPQFVKTPEGMRKITSFHL 61
            P+P   +  ++  ++      F CQ    +  + H  ++G   +V   +    +   + 
Sbjct: 19  TPIPFDKILYNRQQHYDPRTGIFTCQIPGIYYFSYHVHVKGTHVWVGLYKNGTPVMYTYD 78

Query: 62  HFYGVKVESLTQTIKVEQSQSDR 84
            +    ++  + +  ++ +++D+
Sbjct: 79  EYTKGYLDQASGSAIIDLTENDQ 101


>d2id4a1 b.18.1.20 (A:461-601) Kexin, C-terminal domain {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 141

 Score = 26.2 bits (57), Expect = 3.7
 Identities = 4/46 (8%), Positives = 20/46 (43%)

Query: 221 PESVFHSGRVGINTERPDEALVVHGNVKLTGHIIQPSDIRAKQHIT 266
            ++ F+   + ++         +   + ++   +Q ++ +  +H+T
Sbjct: 4   AQTWFYLPTLYVSQSTNSTEETLESVITISEKSLQDANFKRIEHVT 49


>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
           (HCV), different isolates [TaxId: 11103]}
          Length = 138

 Score = 25.4 bits (55), Expect = 6.3
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 238 DEALVVHGNVKLTGHIIQPSDIRAKQHITKCNTKEQ 273
           + AL   G +   G  I    I+  +H+  C++K++
Sbjct: 12  EVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKK 47


>d2vnud4 b.40.4.16 (D:495-910) Exosome complex exonuclease RRP44
           {Saccharomyces cerevisiae [TaxId: 4932]}
          Length = 416

 Score = 25.7 bits (55), Expect = 8.2
 Identities = 42/307 (13%), Positives = 87/307 (28%), Gaps = 20/307 (6%)

Query: 4   VPIYTVDADKGFNFSNADDAFVCQKK--NHFQITCHTQLQGDP-QFVKT-----PEGMRK 55
             I ++D     +    +DA   +K    ++++  H     D   FVK       EG  +
Sbjct: 43  KLICSIDPPGCVDI---NDALHAKKLPNGNWEVGVHI---ADVTHFVKPGTALDAEGAAR 96

Query: 56  ITSFHLHFYGVKVESLTQTIKVEQSQSDRSKKAFHPVLPVPIYTVDADKGFNFSNADDAF 115
            TS +L    + +  +     +   +    + AF  +  +       +  F  S      
Sbjct: 97  GTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSRE 156

Query: 116 VC----QKKNHFQDRIFMESVGAVKELCKVTQNLENRIEDETTSNNMRKKGKPNPDQRYF 171
                  +          E    ++ L K++  L+ +  +    N    + K + D    
Sbjct: 157 AFSYEQAQLRIDDKTQNDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVHMDSETS 216

Query: 172 YLVVGLHAHCSDSNHYPIVSHASERIIVRASNPGQFESDVELCWQRGSSPESVFHSGRVG 231
                       +N           I V       F        +R ++P S        
Sbjct: 217 DPNEVEIKKLLATNSLVEEFMLLANISVARKIYDAFPQTA--MLRRHAAPPSTNFEILNE 274

Query: 232 INTERPDEALVVHGNVKLTGHIIQPSDIRAKQHITKCNTKEQLRNVQQLNVVQFHYTPEF 291
           +   R + ++ +  +  L   + +  D       T          +         Y+   
Sbjct: 275 MLNTRKNMSISLESSKALADSLDRCVDPEDPYFNTLVRIMSTRCMMAAQYFYSGAYSYPD 334

Query: 292 ALHFGLA 298
             H+GLA
Sbjct: 335 FRHYGLA 341


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0432    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,129,139
Number of extensions: 51136
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 11
Length of query: 299
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,240,546
Effective search space: 265476844
Effective search space used: 265476844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.9 bits)