Query psy17828
Match_columns 1061
No_of_seqs 534 out of 1224
Neff 4.4
Searched_HMMs 29240
Date Sat Aug 17 00:02:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17828.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17828hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_U RPN8, 26S proteasome re 100.0 4.6E-48 1.6E-52 428.0 22.0 229 633-1004 3-233 (338)
2 2o95_A 26S proteasome non-ATPa 100.0 4.6E-37 1.6E-41 313.2 17.1 141 632-773 4-144 (187)
3 4e0q_A COP9 signalosome comple 100.0 7.9E-36 2.7E-40 294.1 10.0 135 634-772 4-140 (141)
4 4b4t_V 26S proteasome regulato 100.0 6.1E-28 2.1E-32 264.4 16.9 140 630-775 19-163 (306)
5 4e0q_A COP9 signalosome comple 99.5 3.7E-16 1.3E-20 154.2 -3.7 98 806-912 38-139 (141)
6 4b4t_U RPN8, 26S proteasome re 99.4 5.2E-14 1.8E-18 156.3 6.6 182 806-1019 36-232 (338)
7 2o95_A 26S proteasome non-ATPa 99.2 9.7E-12 3.3E-16 126.8 5.2 145 806-956 39-186 (187)
8 2znr_A AMSH-like protease; met 99.2 1.1E-10 3.6E-15 119.4 12.3 126 634-773 7-136 (178)
9 3rzv_A STAM-binding protein; u 99.0 3.7E-09 1.3E-13 110.9 13.3 123 636-773 42-169 (211)
10 2kks_A Uncharacterized protein 98.4 1.1E-06 3.9E-11 86.3 11.6 119 638-771 2-124 (146)
11 2kcq_A MOV34/MPN/PAD-1 family; 98.3 5.8E-07 2E-11 89.1 7.2 119 640-771 3-126 (153)
12 4b4t_V 26S proteasome regulato 98.2 3.2E-07 1.1E-11 100.9 1.6 176 806-989 52-258 (306)
13 1oi0_A AF2198, hypothetical pr 97.5 0.00021 7.3E-09 68.3 7.9 105 637-770 3-111 (124)
14 1g60_A Adenine-specific methyl 95.9 0.0039 1.3E-07 66.0 3.6 97 339-438 7-121 (260)
15 1boo_A Protein (N-4 cytosine-s 95.7 0.0078 2.7E-07 66.0 5.0 87 338-425 16-121 (323)
16 1eg2_A Modification methylase 93.6 0.023 7.9E-07 62.5 2.1 94 341-438 44-161 (319)
17 2p8r_A PRP8, PRE-mRNA-splicing 91.7 0.3 1E-05 53.3 7.4 112 647-773 46-170 (273)
18 2zig_A TTHA0409, putative modi 91.5 0.12 4.2E-06 55.6 4.2 85 338-425 23-137 (297)
19 2og4_A PRE-mRNA-splicing facto 91.0 0.73 2.5E-05 49.8 9.5 120 638-773 39-167 (254)
20 3lpm_A Putative methyltransfer 89.3 0.17 5.7E-06 52.8 2.8 81 338-418 102-196 (259)
21 3sbg_A PRE-mRNA-splicing facto 82.0 1.3 4.4E-05 51.9 5.4 101 661-774 368-479 (565)
22 4dzr_A Protein-(glutamine-N5) 78.9 1.5 5.1E-05 42.9 4.1 79 337-416 81-185 (215)
23 3evz_A Methyltransferase; NYSG 74.5 1.7 5.9E-05 43.6 3.2 83 336-418 105-201 (230)
24 2ozv_A Hypothetical protein AT 74.5 2.8 9.5E-05 43.9 4.9 78 338-416 93-187 (260)
25 1ne2_A Hypothetical protein TA 71.7 1.7 5.8E-05 42.9 2.4 67 337-416 97-163 (200)
26 3q87_B N6 adenine specific DNA 70.6 3.7 0.00013 40.0 4.5 77 338-418 64-144 (170)
27 1wy7_A Hypothetical protein PH 69.8 3.5 0.00012 40.7 4.2 70 337-418 99-170 (207)
28 3tma_A Methyltransferase; thum 64.0 2.3 8E-05 46.4 1.7 70 337-416 256-332 (354)
29 2znr_A AMSH-like protease; met 63.6 5.7 0.0002 40.4 4.4 52 858-913 80-135 (178)
30 3rzv_A STAM-binding protein; u 62.9 6.8 0.00023 41.2 4.9 52 858-913 113-168 (211)
31 2gau_A Transcriptional regulat 62.5 17 0.00057 36.3 7.5 56 102-166 175-230 (232)
32 2fmy_A COOA, carbon monoxide o 61.1 10 0.00035 37.5 5.7 69 90-166 138-218 (220)
33 3b02_A Transcriptional regulat 60.4 9.8 0.00034 37.1 5.3 67 91-166 112-189 (195)
34 3e97_A Transcriptional regulat 60.1 7.6 0.00026 38.7 4.5 66 93-167 150-226 (231)
35 3e6c_C CPRK, cyclic nucleotide 59.8 9.7 0.00033 38.7 5.3 68 91-167 149-228 (250)
36 2rh2_A Dihydrofolate reductase 59.7 2.9 0.0001 35.0 1.1 11 859-869 23-33 (62)
37 2zcw_A TTHA1359, transcription 59.2 12 0.00042 36.6 5.8 67 91-166 119-196 (202)
38 4ev0_A Transcription regulator 58.8 13 0.00044 36.5 5.8 68 91-167 142-214 (216)
39 2b3t_A Protein methyltransfera 57.4 7.5 0.00026 40.7 4.1 78 338-417 162-257 (276)
40 3d0s_A Transcriptional regulat 55.0 15 0.00051 36.4 5.7 54 103-165 173-226 (227)
41 2frn_A Hypothetical protein PH 54.8 4.9 0.00017 42.6 2.2 68 338-418 178-252 (278)
42 2qm3_A Predicted methyltransfe 54.1 11 0.00036 41.8 4.8 36 106-143 54-89 (373)
43 3dv8_A Transcriptional regulat 52.8 20 0.00069 35.2 6.1 54 104-166 166-219 (220)
44 3ryp_A Catabolite gene activat 52.4 17 0.00059 35.4 5.5 38 104-143 164-201 (210)
45 2yx1_A Hypothetical protein MJ 49.2 5.3 0.00018 43.7 1.4 64 338-416 246-310 (336)
46 3grz_A L11 mtase, ribosomal pr 48.6 12 0.00042 36.8 3.8 68 337-417 111-179 (205)
47 3iwz_A CAP-like, catabolite ac 47.8 22 0.00075 35.1 5.5 38 104-143 184-221 (230)
48 3v97_A Ribosomal RNA large sub 45.9 3 0.0001 50.5 -1.3 80 338-417 593-676 (703)
49 1yb2_A Hypothetical protein TA 45.4 10 0.00036 39.6 2.8 66 338-417 165-231 (275)
50 2pwy_A TRNA (adenine-N(1)-)-me 45.1 11 0.00036 38.3 2.8 66 338-416 151-217 (258)
51 1zyb_A Transcription regulator 44.6 19 0.00064 36.2 4.5 53 89-143 162-220 (232)
52 1ft9_A Carbon monoxide oxidati 43.9 20 0.0007 35.5 4.6 69 90-167 134-215 (222)
53 2xvc_A ESCRT-III, SSO0910; cel 43.6 20 0.00067 30.9 3.6 23 120-142 36-58 (59)
54 2bgc_A PRFA; bacterial infecti 43.3 29 0.00099 35.0 5.7 55 103-166 164-220 (238)
55 1qgp_A Protein (double strande 42.1 25 0.00084 31.0 4.3 55 86-142 10-64 (77)
56 3dkw_A DNR protein; CRP-FNR, H 41.9 22 0.00076 35.0 4.5 52 90-143 152-212 (227)
57 3la7_A Global nitrogen regulat 41.4 23 0.0008 35.8 4.7 38 103-142 189-226 (243)
58 3kcc_A Catabolite gene activat 37.3 31 0.001 35.5 4.8 38 104-143 214-251 (260)
59 3a27_A TYW2, uncharacterized p 37.1 13 0.00044 39.3 2.0 66 338-416 172-244 (272)
60 1o54_A SAM-dependent O-methylt 36.2 16 0.00055 38.1 2.5 66 338-417 167-233 (277)
61 2oz6_A Virulence factor regula 35.9 30 0.001 33.6 4.2 38 104-143 161-198 (207)
62 2yxd_A Probable cobalt-precorr 35.1 16 0.00053 34.6 2.0 66 338-418 86-152 (183)
63 1xmk_A Double-stranded RNA-spe 33.9 39 0.0013 30.3 4.2 50 88-142 9-59 (79)
64 1qbj_A Protein (double-strande 33.8 37 0.0013 30.4 4.1 55 87-143 7-61 (81)
65 2jjq_A Uncharacterized RNA met 32.2 33 0.0011 39.0 4.4 62 337-411 339-400 (425)
66 2heo_A Z-DNA binding protein 1 31.3 50 0.0017 28.0 4.4 47 91-141 11-57 (67)
67 2oyr_A UPF0341 protein YHIQ; a 30.7 16 0.00056 39.0 1.5 29 338-366 148-176 (258)
68 2oo3_A Protein involved in cat 30.6 23 0.00077 38.9 2.6 39 354-399 159-199 (283)
69 3c0k_A UPF0064 protein YCCW; P 30.5 13 0.00043 41.4 0.6 81 338-418 274-365 (396)
70 3p9n_A Possible methyltransfer 30.4 12 0.00041 36.5 0.3 29 338-366 96-125 (189)
71 3bwc_A Spermidine synthase; SA 29.9 11 0.00038 40.6 -0.0 76 338-416 152-233 (304)
72 3fx3_A Cyclic nucleotide-bindi 29.1 84 0.0029 31.2 6.3 66 91-166 154-227 (237)
73 3mb5_A SAM-dependent methyltra 29.0 29 0.00099 35.3 3.0 67 338-418 148-217 (255)
74 3tm4_A TRNA (guanine N2-)-meth 28.7 20 0.0007 39.6 1.9 30 337-367 270-299 (373)
75 1p6r_A Penicillinase repressor 28.6 65 0.0022 27.6 4.7 51 90-143 9-61 (82)
76 2kcq_A MOV34/MPN/PAD-1 family; 28.0 43 0.0015 32.7 3.8 66 859-936 75-142 (153)
77 3ldg_A Putative uncharacterize 27.8 26 0.00088 39.5 2.5 28 338-367 286-313 (384)
78 2qfm_A Spermine synthase; sper 27.6 10 0.00034 42.9 -0.9 73 338-411 248-327 (364)
79 3ll7_A Putative methyltransfer 27.1 12 0.0004 42.9 -0.4 30 337-366 145-175 (410)
80 2xyq_A Putative 2'-O-methyl tr 27.0 46 0.0016 36.2 4.2 78 337-417 107-191 (290)
81 3ldu_A Putative methylase; str 26.2 29 0.00098 38.9 2.5 28 338-367 287-314 (385)
82 2ih2_A Modification methylase 26.0 28 0.00097 38.2 2.4 27 338-366 84-110 (421)
83 1o5l_A Transcriptional regulat 25.2 15 0.00051 36.4 0.0 50 92-143 144-198 (213)
84 3gdh_A Trimethylguanosine synt 24.8 23 0.00078 35.7 1.3 27 338-366 130-156 (241)
85 1l3i_A Precorrin-6Y methyltran 24.8 24 0.00082 33.5 1.3 70 338-418 85-155 (192)
86 3e05_A Precorrin-6Y C5,15-meth 24.7 67 0.0023 31.5 4.6 68 338-416 93-161 (204)
87 2dql_A PEX protein; circadian 24.6 1.5E+02 0.0051 27.6 6.8 79 86-168 17-106 (115)
88 3k0b_A Predicted N6-adenine-sp 24.4 32 0.0011 38.7 2.5 29 337-367 292-320 (393)
89 1uwv_A 23S rRNA (uracil-5-)-me 24.3 62 0.0021 36.5 4.8 69 338-417 337-408 (433)
90 2fpo_A Methylase YHHF; structu 23.9 24 0.00081 35.2 1.1 56 338-399 106-161 (202)
91 3adn_A Spermidine synthase; am 23.8 29 0.00099 37.4 1.9 61 338-401 141-201 (294)
92 2htj_A P fimbrial regulatory p 22.9 1.6E+02 0.0054 25.2 6.1 47 92-143 2-48 (81)
93 1txp_A HnRNP C, heterogeneous 22.8 53 0.0018 24.4 2.4 23 6-28 6-28 (28)
94 2ipx_A RRNA 2'-O-methyltransfe 22.2 32 0.0011 34.7 1.7 69 338-417 129-211 (233)
95 1o9g_A RRNA methyltransferase; 22.1 37 0.0013 34.7 2.2 29 338-366 148-180 (250)
96 3bj6_A Transcriptional regulat 21.9 2.2E+02 0.0077 26.1 7.4 50 92-146 42-91 (152)
97 2aze_A Transcription factor DP 21.8 67 0.0023 32.5 3.9 29 4-32 3-31 (155)
98 1iy9_A Spermidine synthase; ro 21.5 37 0.0013 35.9 2.2 61 338-401 132-192 (275)
99 2h00_A Methyltransferase 10 do 21.3 51 0.0017 33.6 3.0 28 338-365 119-151 (254)
100 2r6z_A UPF0341 protein in RSP 21.2 17 0.00058 38.5 -0.6 29 338-366 142-173 (258)
101 2esr_A Methyltransferase; stru 21.1 20 0.0007 34.2 0.0 56 338-399 84-139 (177)
102 3l7w_A Putative uncharacterize 21.0 1.1E+02 0.0036 28.0 4.9 74 91-168 10-88 (108)
103 1nv8_A HEMK protein; class I a 21.0 57 0.0019 34.7 3.4 73 338-413 176-264 (284)
104 1i9g_A Hypothetical protein RV 20.2 56 0.0019 33.6 3.1 65 338-417 156-224 (280)
No 1
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-48 Score=428.05 Aligned_cols=229 Identities=50% Similarity=0.878 Sum_probs=180.5
Q ss_pred cccceEEEeehhHhhHHHHHhhccccCCceeEEEEEeeEEecCcEEEEEEEeeccccCCCCCCccccccHHHHHHHHHHH
Q psy17828 633 VVTSKVVVHPLVLLSVVDHFNRMSKIGNQKRVVGVLLGCWKGKGILDVSNSFAVPFDEDDKDNSVWFLDHDYLENMYGMF 712 (1061)
Q Consensus 633 ~~~~~V~VHPLVLLsIsDH~tR~~~~~~~~rVvGvLLG~~~g~gtVEVTNSFaVP~eEde~d~~v~~lD~~Y~e~Mlemf 712 (1061)
....+|.|||||||+|+|||+|.+. +.+.||+|+|||.+.| ++|+|+|||++|+++++++.++|++|++|+++|++||
T Consensus 3 ~~~~~V~vhPlVll~I~dH~~R~~~-~~~~rViG~LLG~~~~-~~veV~nsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~ 80 (338)
T 4b4t_U 3 LQHEKVTIAPLVLLSALDHYERTQT-KENKRCVGVILGDANS-STIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMC 80 (338)
T ss_dssp CCCSEEEECHHHHHHHHHHHHHHTT-TCCSCCEEEEEEEECS-SEEEEEEEEECCEEECSSSTTCEEECHHHHHHHHHHH
T ss_pred CCCCEEEEecHHHHHHHHHHHHhhc-CCCCeEEEEEEeEEcC-CEEEEEEEEEeccccCCCCCccccccHHHHHHHHHHH
Confidence 3457999999999999999999654 4568999999999976 5799999999999998888889999999999999999
Q ss_pred HhhcCCCceEEEEecCCCCCcccHHHHHHHHhhCC-CcEEEEEcCCCCCCCcceEEEEecccccCCCCCCCCCCCCcccc
Q psy17828 713 KKVNAREKVVGWYHTGPKLHQNDIQINELIRRYCT-NSVLVIIDAKPKELGLPTEAYRVVDEDKIRPEREPNPRPSANKA 791 (1061)
Q Consensus 713 KkVnp~E~VVGWYsTGp~ls~~Dl~Ihe~f~~~~~-nPI~LivDPs~ss~gLplKAYrlv~e~~~~~g~e~~~~~~~~~a 791 (1061)
|+|||++.+||||+||+.+++.|+.||++|+++++ +|++|++|+....++
T Consensus 81 kkV~~~e~iVGWY~tg~~~~~~d~~Ih~~~~~~~~~~pi~l~~d~~~~~~~----------------------------- 131 (338)
T 4b4t_U 81 KKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQNNPLLLIVDVKQQGVG----------------------------- 131 (338)
T ss_dssp HHHCCSCEEEEEEECCSSCCSTHHHHHHHHGGGCCSCCCEEEECSCCCSSS-----------------------------
T ss_pred hhcCccCCEEEEEecCCCCCccHHHHHHHHHhccCCCcEEEEecCCCCCCC-----------------------------
Confidence 99999999999999999998888888888888774 666666666544444
Q ss_pred cccccccCCCCCccccccccCCCCccccccccccccccccceeeeecCCCCCcceecccCcCCCCCCccceeeeeccCCC
Q psy17828 792 AIGKWKTNTTPNKAFLCGRSSRGGKVGRIRCRSHFSTTGVLSIRRIFNPIGTWTFIRIPTTTWPSRAREKVVGWYHTGPK 871 (1061)
Q Consensus 792 ~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~m~~L~qKVNPkE~IVGWYsTGse 871 (1061)
T Consensus 132 -------------------------------------------------------------------------------- 131 (338)
T 4b4t_U 132 -------------------------------------------------------------------------------- 131 (338)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCchHHHHHHHHhhcCCceEEEEcCCCCCCCCCceeEEEeeeccCCCCcceeeEEeecccccccccccccccccccccc
Q psy17828 872 LHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVVDEVHDDGSPTTKTFDHVPSEIGAEEAEEVGVEHLLRDIK 951 (1061)
Q Consensus 872 lt~~s~lIHefys~~~~~PIhL~VDt~~~~~~LPi~AYvsv~ev~~dGs~~~k~Fv~VP~~I~aeEAErIgVEhLlr~i~ 951 (1061)
+|++||+++.++..+|......|+++|++|.++|||||||+|++|+..
T Consensus 132 --------------------------------lpi~aY~s~~~~~~~~~~~~~~F~~lp~~i~~~eaE~Igv~~l~r~~~ 179 (338)
T 4b4t_U 132 --------------------------------LPTDAYVAIEQVKDDGTSTEKTFLHLPCTIEAEEAEEIGVEHLLRDVR 179 (338)
T ss_dssp --------------------------------CSEEEEEEEEECSSCSTTCEEEEEEECEEECSCHHHHHHHHHHHHHHS
T ss_pred --------------------------------cceEEEEeehhccCCCcccccEEEEeeeEeecCcHHHHHHHHHHhccc
Confidence 455555554445455666677899999999999999999999999998
Q ss_pred ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHhhc
Q psy17828 952 DTTVGSLSQRVTNQLMGLKGLNQQIKEIEKYVGQVSRY-WPPFYVVVINLIDKR 1004 (1061)
Q Consensus 952 dat~s~L~s~l~~~~~aLk~L~~rL~~I~~YLd~V~~g-vpp~~~ilr~l~~~~ 1004 (1061)
+.+.+.+..++.++.+++++|+.+|+.|.+||++|.+| +|+||.|+|.|++.+
T Consensus 180 ~~~~~~l~~~l~~~~~al~~L~~~l~~i~~Yl~~V~~g~~~~n~~ilr~l~~~~ 233 (338)
T 4b4t_U 180 DQAAGGLSIRLTNQLKSLKGLQSKLKDVVEYLDKVINKELPINHTILGKLQDVF 233 (338)
T ss_dssp SCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------
T ss_pred cCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999 999999999999853
No 2
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=100.00 E-value=4.6e-37 Score=313.21 Aligned_cols=141 Identities=82% Similarity=1.369 Sum_probs=126.8
Q ss_pred CcccceEEEeehhHhhHHHHHhhccccCCceeEEEEEeeEEecCcEEEEEEEeeccccCCCCCCccccccHHHHHHHHHH
Q psy17828 632 EVVTSKVVVHPLVLLSVVDHFNRMSKIGNQKRVVGVLLGCWKGKGILDVSNSFAVPFDEDDKDNSVWFLDHDYLENMYGM 711 (1061)
Q Consensus 632 ~~~~~~V~VHPLVLLsIsDH~tR~~~~~~~~rVvGvLLG~~~g~gtVEVTNSFaVP~eEde~d~~v~~lD~~Y~e~Mlem 711 (1061)
+.+..+|+|||+|+|+|+|||+|..+.+.+.+|+|+|||.+.+ ++++|+|||++|+++++.+++.|++|++|++.|+++
T Consensus 4 ~~~~~~V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~~~~-~~v~V~~~f~lp~~~~~~~~~~~~~d~ey~~~m~~~ 82 (187)
T 2o95_A 4 ELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQK-KVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGM 82 (187)
T ss_dssp CCSCSEEEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEEESS-SEEEEEEEEEECEEECSSCTTSEEECHHHHHHHHHH
T ss_pred CCCCCEEEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEEEcC-CEEEEEEEEEeCCcccCCCcchhhcCHHHHHHHHHH
Confidence 3566799999999999999999974334678999999999975 579999999999998876667789999999999999
Q ss_pred HHhhcCCCceEEEEecCCCCCcccHHHHHHHHhhCCCcEEEEEcCCCCCCCcceEEEEeccc
Q psy17828 712 FKKVNAREKVVGWYHTGPKLHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVVDE 773 (1061)
Q Consensus 712 fKkVnp~E~VVGWYsTGp~ls~~Dl~Ihe~f~~~~~nPI~LivDPs~ss~gLplKAYrlv~e 773 (1061)
|++||+++.+||||||++..+..|+.||++|++++++|++|++||..+.+++|++||+++++
T Consensus 83 ~~~v~~~~~iVGWY~s~~~~s~~d~~i~~~~~~~~~~~v~Livd~~~~~~~l~i~ay~~~~~ 144 (187)
T 2o95_A 83 FKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEE 144 (187)
T ss_dssp HHTTSSSCEEEEEEECCSSCCTTHHHHHHHHTTTCTTCEEEEECCCTTC-CCSEEEEEEEEE
T ss_pred HHHhCCCCCEEEEEcCCCcCCcccHHHHHHHHhcCCCCEEEEECCCCCCCCcCeEEEEEech
Confidence 99999999999999999999999999999999999999999999988766799999988754
No 3
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=100.00 E-value=7.9e-36 Score=294.13 Aligned_cols=135 Identities=24% Similarity=0.510 Sum_probs=113.0
Q ss_pred ccceEEEeehhHhhHHHHHhhccc-cCCceeEEEEEeeEEecCcEEEEEEEeeccccCCCCCCccccccHHHHHHHHHHH
Q psy17828 634 VTSKVVVHPLVLLSVVDHFNRMSK-IGNQKRVVGVLLGCWKGKGILDVSNSFAVPFDEDDKDNSVWFLDHDYLENMYGMF 712 (1061)
Q Consensus 634 ~~~~V~VHPLVLLsIsDH~tR~~~-~~~~~rVvGvLLG~~~g~gtVEVTNSFaVP~eEde~d~~v~~lD~~Y~e~Mlemf 712 (1061)
+..+|+|||||||+|+|||+|.+. .+.+.+|+|+|||.+.+ ++|+|+|||++|+++++++ +++|++|+++|++||
T Consensus 4 ~~~~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~~~~-~~veV~nsF~~p~~~~~~~---~~~d~~y~~~m~~~~ 79 (141)
T 4e0q_A 4 MSVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKG-RNIEIMNSFELKTDVIGDE---TVINKDYYNKKEQQY 79 (141)
T ss_dssp -CEEEEECHHHHHHHHHHHHCC------CCEEEEEEEEEEET-TEEEEEEEEECCEEEETTE---EEECHHHHHHHHHHH
T ss_pred CcEEEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEEEeC-CEEEEEEEEEecccCCCCc---eeecHHHHHHHHHHH
Confidence 467999999999999999999643 23578999999999976 5899999999999887643 699999999999999
Q ss_pred HhhcCCCceEEEEecCCCCCcccHHHHHHHHhhCCCcEEEEEcCCCCCCC-cceEEEEecc
Q psy17828 713 KKVNAREKVVGWYHTGPKLHQNDIQINELIRRYCTNSVLVIIDAKPKELG-LPTEAYRVVD 772 (1061)
Q Consensus 713 KkVnp~E~VVGWYsTGp~ls~~Dl~Ihe~f~~~~~nPI~LivDPs~ss~g-LplKAYrlv~ 772 (1061)
|+|||++++||||+||++++.+|+.||++|++++++||+|++||.++.+| ||++||+++.
T Consensus 80 k~v~~~e~iVGWY~s~~~~~~~d~~i~~~~~~~~~~pV~L~~Dp~~~~~g~Lp~~ay~sv~ 140 (141)
T 4e0q_A 80 KQVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQLNPLSRSVDHLPLKLFESLI 140 (141)
T ss_dssp HHHSTTCEEEEEEEEEC-------CHHHHHHHTTCCCEEEEESCSCCCCTTHHHHHHCC--
T ss_pred HHhCCCccEEEEEeCCCCCCcchHHHHHHHHHHCCCCEEEEECCCccCCCeEEEEEEEEEc
Confidence 99999999999999999999999999999999999999999999998876 9999999874
No 4
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.1e-28 Score=264.39 Aligned_cols=140 Identities=26% Similarity=0.478 Sum_probs=124.7
Q ss_pred CCCcccceEEEeehhHhhHHHHHhhccccCCceeEEEEEeeEEecCcEEEEEEEeeccccCCCCCCccccccHHHHHHHH
Q psy17828 630 GQEVVTSKVVVHPLVLLSVVDHFNRMSKIGNQKRVVGVLLGCWKGKGILDVSNSFAVPFDEDDKDNSVWFLDHDYLENMY 709 (1061)
Q Consensus 630 ~~~~~~~~V~VHPLVLLsIsDH~tR~~~~~~~~rVvGvLLG~~~g~gtVEVTNSFaVP~eEde~d~~v~~lD~~Y~e~Ml 709 (1061)
....+..+|+|+|||||+|++|+.+ +.+.+|+|+|||...++++++|+|||++|.++++. .++.+|+.|+.+|+
T Consensus 19 ~~~~~~~~V~is~lallkm~~Ha~~----~~~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~~~~--~v~~~d~~y~~~m~ 92 (306)
T 4b4t_V 19 GRDDTKETVYISSIALLKMLKHGRA----GVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGV--SVEAVDDVFQAKMM 92 (306)
T ss_dssp CCCSSCCEEEECHHHHHHHHHHTCS----CSSSCCEEEEEEEEETTTEEEEEEEECCCCEESSS--CEECCCHHHHHHHH
T ss_pred CCCCCCCEEEEeHHHHHHHHHHhcC----CCCceEEEEEeeEEcCCeEEEEEEEEeCCcCCCCC--chhcCCHHHHHHHH
Confidence 3345678999999999999999954 56789999999987666789999999999987754 46789999999999
Q ss_pred HHHHhhcCCCceEEEEecCCC----CCcccHHHHHHHHhhCCCcEEEEEcCCCCCCC-cceEEEEeccccc
Q psy17828 710 GMFKKVNAREKVVGWYHTGPK----LHQNDIQINELIRRYCTNSVLVIIDAKPKELG-LPTEAYRVVDEDK 775 (1061)
Q Consensus 710 emfKkVnp~E~VVGWYsTGp~----ls~~Dl~Ihe~f~~~~~nPI~LivDPs~ss~g-LplKAYrlv~e~~ 775 (1061)
++++++|+++.+||||||+|. ++..|+.+|..|+++++++|+|++||.++.+| ++++|||++++..
T Consensus 93 ~~~~~v~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t~~G~~~i~Afr~~~~~~ 163 (306)
T 4b4t_V 93 DMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDTGA 163 (306)
T ss_dssp HHHHHHSCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSSSSSCSSCEEEEECCHHHH
T ss_pred HHHHHhCCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCcCCCCceeeeEEEecCccc
Confidence 999999999999999999986 67899999999999999999999999988755 9999999998744
No 5
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=99.51 E-value=3.7e-16 Score=154.21 Aligned_cols=98 Identities=15% Similarity=0.304 Sum_probs=75.6
Q ss_pred ccccccCCCCccccccc---cccccccccceeeeecCCCCCcceecccCcCCCCCCccceeeeeccCCCCCCchHHHHHH
Q psy17828 806 FLCGRSSRGGKVGRIRC---RSHFSTTGVLSIRRIFNPIGTWTFIRIPTTTWPSRAREKVVGWYHTGPKLHQNDIQINEL 882 (1061)
Q Consensus 806 ~~~g~~~~~g~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~m~~L~qKVNPkE~IVGWYsTGselt~~s~lIHef 882 (1061)
.|+|... |+.+.+.+| .+.-+++.+ -+|.--++.|+++++||||+|.|||||+||+.++++|.+||++
T Consensus 38 ~LLG~~~-~~~veV~nsF~~p~~~~~~~~--------~~d~~y~~~m~~~~k~v~~~e~iVGWY~s~~~~~~~d~~i~~~ 108 (141)
T 4e0q_A 38 ALIGKQK-GRNIEIMNSFELKTDVIGDET--------VINKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQRQ 108 (141)
T ss_dssp EEEEEEE-TTEEEEEEEEECCEEEETTEE--------EECHHHHHHHHHHHHHHSTTCEEEEEEEEEC-------CHHHH
T ss_pred EEEEEEe-CCEEEEEEEEEecccCCCCce--------eecHHHHHHHHHHHHHhCCCccEEEEEeCCCCCCcchHHHHHH
Confidence 5889884 789999999 343333322 1355567899999999999999999999999999999999999
Q ss_pred HHhhcCCceEEEEcCCCCCC-CCCceeEEEe
Q psy17828 883 IRRYCTNSVLVIIDAKPKEL-GLPTEAYRVV 912 (1061)
Q Consensus 883 ys~~~~~PIhL~VDt~~~~~-~LPi~AYvsv 912 (1061)
|++++++||+|++|+..... +||++||+++
T Consensus 109 ~~~~~~~pV~L~~Dp~~~~~g~Lp~~ay~sv 139 (141)
T 4e0q_A 109 IAAINECPIMLQLNPLSRSVDHLPLKLFESL 139 (141)
T ss_dssp HHHTTCCCEEEEESCSCCCCTTHHHHHHCC-
T ss_pred HHHHCCCCEEEEECCCccCCCeEEEEEEEEE
Confidence 99999999999999998775 4999999975
No 6
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.44 E-value=5.2e-14 Score=156.26 Aligned_cols=182 Identities=20% Similarity=0.287 Sum_probs=114.6
Q ss_pred ccccccCCCCccccccc---cccccccccceeeeecCCCCCcceecccCcCCCCCCccceeeeeccCCCCCCchHHHHHH
Q psy17828 806 FLCGRSSRGGKVGRIRC---RSHFSTTGVLSIRRIFNPIGTWTFIRIPTTTWPSRAREKVVGWYHTGPKLHQNDIQINEL 882 (1061)
Q Consensus 806 ~~~g~~~~~g~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~m~~L~qKVNPkE~IVGWYsTGselt~~s~lIHef 882 (1061)
.|+|.+ .||.+.+..| .+.-++++.-.+. +|..-+++|+++++||||+|.|||||+||++++++|++||+|
T Consensus 36 ~LLG~~-~~~~veV~nsF~~p~~e~~~~~~~~~-----~D~~y~~~m~~~~kkV~~~e~iVGWY~tg~~~~~~d~~Ih~~ 109 (338)
T 4b4t_U 36 VILGDA-NSSTIRVTNSFALPFEEDEKNSDVWF-----LDHNYIENMNEMCKKINAKEKLIGWYHSGPKLRASDLKINEL 109 (338)
T ss_dssp EEEEEE-CSSEEEEEEEEECCEEECSSSTTCEE-----ECHHHHHHHHHHHHHHCCSCEEEEEEECCSSCCSTHHHHHHH
T ss_pred EEEeEE-cCCEEEEEEEEEeccccCCCCCcccc-----ccHHHHHHHHHHHhhcCccCCEEEEEecCCCCCccHHHHHHH
Confidence 488987 4789999999 3433333332222 366667999999999999999999999999999999999999
Q ss_pred HHhhcC-CceEEEEcCCCCCCCCCceeEEEeeeccCCCCcceeeEEeeccccccccccccccccccccccc--cc---cc
Q psy17828 883 IRRYCT-NSVLVIIDAKPKELGLPTEAYRVVDEVHDDGSPTTKTFDHVPSEIGAEEAEEVGVEHLLRDIKD--TT---VG 956 (1061)
Q Consensus 883 ys~~~~-~PIhL~VDt~~~~~~LPi~AYvsv~ev~~dGs~~~k~Fv~VP~~I~aeEAErIgVEhLlr~i~d--at---~s 956 (1061)
|++++. +|+||++|+.. .+|....++|+.++-......+...-+.++.-.+.. +. +.
T Consensus 110 ~~~~~~~~pi~l~~d~~~-----------------~~~~lpi~aY~s~~~~~~~~~~~~~~F~~lp~~i~~~eaE~Igv~ 172 (338)
T 4b4t_U 110 FKKYTQNNPLLLIVDVKQ-----------------QGVGLPTDAYVAIEQVKDDGTSTEKTFLHLPCTIEAEEAEEIGVE 172 (338)
T ss_dssp HGGGCCSCCCEEEECSCC-----------------CSSSCSEEEEEEEEECSSCSTTCEEEEEEECEEECSCHHHHHHHH
T ss_pred HHhccCCCcEEEEecCCC-----------------CCCCcceEEEEeehhccCCCcccccEEEEeeeEeecCcHHHHHHH
Confidence 999995 89999999751 134456788998875444333333333444333331 11 11
Q ss_pred cchh-----hhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHh-hccccccCCCccccccc
Q psy17828 957 SLSQ-----RVTNQLMGLKGLNQQIKEIEKYVGQVSRYWPPFYVVVINLID-KRSVTHLSGPGRWLLPW 1019 (1061)
Q Consensus 957 ~L~s-----~l~~~~~aLk~L~~rL~~I~~YLd~V~~gvpp~~~ilr~l~~-~~~~~~~~~~gr~l~~~ 1019 (1061)
.+.. ........+..+...|+.+...|+.|.+|+ .++.+ ++.+++ .+||+|..-
T Consensus 173 ~l~r~~~~~~~~~l~~~l~~~~~al~~L~~~l~~i~~Yl-------~~V~~g~~~~n~--~ilr~l~~~ 232 (338)
T 4b4t_U 173 HLLRDVRDQAAGGLSIRLTNQLKSLKGLQSKLKDVVEYL-------DKVINKELPINH--TILGKLQDV 232 (338)
T ss_dssp HHHHHHSSCC---CHHHHHHHHHHHHHHHHHHHHHHHHH-------HHC--------------------
T ss_pred HHHhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHH-------HhhccCCCCCCH--HHHHHHHHH
Confidence 1111 122334457778888999999999999997 77777 788887 999998653
No 7
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=99.18 E-value=9.7e-12 Score=126.76 Aligned_cols=145 Identities=59% Similarity=0.848 Sum_probs=117.0
Q ss_pred ccccccCCCCccccccc---cccccccccceeeeecCCCCCcceecccCcCCCCCCccceeeeeccCCCCCCchHHHHHH
Q psy17828 806 FLCGRSSRGGKVGRIRC---RSHFSTTGVLSIRRIFNPIGTWTFIRIPTTTWPSRAREKVVGWYHTGPKLHQNDIQINEL 882 (1061)
Q Consensus 806 ~~~g~~~~~g~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~m~~L~qKVNPkE~IVGWYsTGselt~~s~lIHef 882 (1061)
+|+|+.. ||.+.+.+| .+.-+.++.-..+ +|.--+..|.++++|+||+|.|||||+||+.++..|..||++
T Consensus 39 ~LLG~~~-~~~v~V~~~f~lp~~~~~~~~~~~~-----~d~ey~~~m~~~~~~v~~~~~iVGWY~s~~~~s~~d~~i~~~ 112 (187)
T 2o95_A 39 VLLGSWQ-KKVLDVSNSFAVPFDEDDKDDSVWF-----LDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINEL 112 (187)
T ss_dssp EEEEEES-SSEEEEEEEEEECEEECSSCTTSEE-----ECHHHHHHHHHHHHTTSSSCEEEEEEECCSSCCTTHHHHHHH
T ss_pred EEEEEEc-CCEEEEEEEEEeCCcccCCCcchhh-----cCHHHHHHHHHHHHHhCCCCCEEEEEcCCCcCCcccHHHHHH
Confidence 6889887 678999999 3433333211111 233345789999999999999999999999999999999999
Q ss_pred HHhhcCCceEEEEcCCCCCCCCCceeEEEeeeccCCCCcceeeEEeeccccccccccccccccccccccccccc
Q psy17828 883 IRRYCTNSVLVIIDAKPKELGLPTEAYRVVDEVHDDGSPTTKTFDHVPSEIGAEEAEEVGVEHLLRDIKDTTVG 956 (1061)
Q Consensus 883 ys~~~~~PIhL~VDt~~~~~~LPi~AYvsv~ev~~dGs~~~k~Fv~VP~~I~aeEAErIgVEhLlr~i~dat~s 956 (1061)
|.+++++|++|++|+....+++|++||.+..++.++|......|+++|++|.++|||||||+|++|++++++++
T Consensus 113 ~~~~~~~~v~Livd~~~~~~~l~i~ay~~~~~~~~~~~~~~~~F~~ip~~I~~~eaE~i~v~~l~~~~~~~~~~ 186 (187)
T 2o95_A 113 MKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVG 186 (187)
T ss_dssp HTTTCTTCEEEEECCCTTC-CCSEEEEEEEEECC----CCEEEEEEEEEEECCCHHHHHHHHHHHHHCCSCCC-
T ss_pred HHhcCCCCEEEEECCCCCCCCcCeEEEEEechhcCCCCcccCEEEEeeEEEecCcHHHHHHHHHHhcCCCcccc
Confidence 99999999999999987666799999999887766665567889999999999999999999999999987765
No 8
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=99.18 E-value=1.1e-10 Score=119.37 Aligned_cols=126 Identities=13% Similarity=0.174 Sum_probs=97.7
Q ss_pred ccceEEEeehhHhhHHHHHhhccccCCceeEEEEEeeEEecCcEEEEEEEeeccccCCCCCCccccccHHHHHHHHHHHH
Q psy17828 634 VTSKVVVHPLVLLSVVDHFNRMSKIGNQKRVVGVLLGCWKGKGILDVSNSFAVPFDEDDKDNSVWFLDHDYLENMYGMFK 713 (1061)
Q Consensus 634 ~~~~V~VHPLVLLsIsDH~tR~~~~~~~~rVvGvLLG~~~g~gtVEVTNSFaVP~eEde~d~~v~~lD~~Y~e~MlemfK 713 (1061)
+...|.|-..++.+|+.|+.+.. ..+..|+|.|+|...++ +.+|+++|++|....... +...+..- .++.
T Consensus 7 ~~~~v~i~~~~l~k~l~hA~~~~--~~~~EvcGlL~G~~~~~-~~~V~~v~~~pq~~t~~~--~~~~~~~e---~~~~-- 76 (178)
T 2znr_A 7 GLRCVVLPEDLCHKFLQLAESNT--VRGIETCGILCGKLTHN-EFTITHVIVPKQSAGPDY--CDMENVEE---LFNV-- 76 (178)
T ss_dssp SCCCEEEETTHHHHHHHHHHHHH--TTTCCCEEEEEEEEETT-EEEEEEEEECCEEEETTE--EEECCHHH---HHHH--
T ss_pred CcEEEEECHHHHHHHHHHHHhCC--CCCceEEEEEeeEecCC-CeEEEEEEeCCcCCCCCe--eccCCHHH---HHHH--
Confidence 45689999999999999997742 12468999999998754 699999999998654322 22233321 2222
Q ss_pred hhcCCCceEEEEecCCC----CCcccHHHHHHHHhhCCCcEEEEEcCCCCCCCcceEEEEeccc
Q psy17828 714 KVNAREKVVGWYHTGPK----LHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVVDE 773 (1061)
Q Consensus 714 kVnp~E~VVGWYsTGp~----ls~~Dl~Ihe~f~~~~~nPI~LivDPs~ss~gLplKAYrlv~e 773 (1061)
....++.+||||||+|. ++..|+..|..|+.+.+..|+|+++|..+ .++|||+.++
T Consensus 77 ~~~~~l~~vGwyHSHP~~~~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~~----~~~afrl~~~ 136 (178)
T 2znr_A 77 QDQHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHK----DTGIFRLTNA 136 (178)
T ss_dssp HHHHTCEEEEEEEECSSSCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGGT----EEEEEEECHH
T ss_pred HHhCCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhcCCEEEEEEcCCCC----cceEEEEECC
Confidence 34578999999999874 88999999999999999999999999874 3799999965
No 9
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=98.96 E-value=3.7e-09 Score=110.87 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=94.0
Q ss_pred ceEEEeehhHhhHHHHHhhccccCCceeEEEEEeeEEecCcEEEEEEEeeccccCCCCCCccccccHH-HHHHHHHHHHh
Q psy17828 636 SKVVVHPLVLLSVVDHFNRMSKIGNQKRVVGVLLGCWKGKGILDVSNSFAVPFDEDDKDNSVWFLDHD-YLENMYGMFKK 714 (1061)
Q Consensus 636 ~~V~VHPLVLLsIsDH~tR~~~~~~~~rVvGvLLG~~~g~gtVEVTNSFaVP~eEde~d~~v~~lD~~-Y~e~MlemfKk 714 (1061)
.+|.|-.-++-+|+.|..... ..+..|+|.|+|...+ ++++|+++|..|....++. +...+.. .++-+. .
T Consensus 42 r~v~Ipk~ll~kfL~~A~~~t--p~~~EvcGlL~Gk~~~-~~~~I~~v~~ppq~gt~~~--v~~~~~~e~~~~~~----~ 112 (211)
T 3rzv_A 42 RHVVVPGRLCPQFLQLASANT--ARGVATCGILCGKLMR-NEFTITHVLIPKQSAGSDY--CNTENEEELFLIQD----Q 112 (211)
T ss_dssp CCEEEETTHHHHHHHHHHHHH--HTTCCCEEEEEEEEET-TEEEEEEEEECCEEECSSC--EEECCHHHHHHHHH----H
T ss_pred EEEEECHHHHHHHHHHHHhCC--CCCceEEEEEEeEcCC-CCEEEEEEEeCCccCCCCc--eeccChHHHHHHHh----h
Confidence 578888899999999987632 1246899999999865 5799999998887655432 2233322 221111 1
Q ss_pred hcCCCceEEEEecCCC----CCcccHHHHHHHHhhCCCcEEEEEcCCCCCCCcceEEEEeccc
Q psy17828 715 VNAREKVVGWYHTGPK----LHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVVDE 773 (1061)
Q Consensus 715 Vnp~E~VVGWYsTGp~----ls~~Dl~Ihe~f~~~~~nPI~LivDPs~ss~gLplKAYrlv~e 773 (1061)
.++.+||||||+|. ++..|+..|..|+...+..|+|++||... +++|||++++
T Consensus 113 --~~l~~vGWyHSHP~~~~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~~~----~lgaFrLtp~ 169 (211)
T 3rzv_A 113 --QGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQ----ETGFFKLTDH 169 (211)
T ss_dssp --HTCEEEEEEEECTTSCSCCCHHHHHHHHHHHHHCTTCEEEEEETTTT----EEEEEEECHH
T ss_pred --CCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCC----eeeEEEeccc
Confidence 58999999999874 89999999999999999999999999743 7999999976
No 10
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=98.43 E-value=1.1e-06 Score=86.32 Aligned_cols=119 Identities=12% Similarity=0.141 Sum_probs=85.5
Q ss_pred EEEeehhHhhHHHHHhhccccCCceeEEEEEeeEEecCcEEEEEEEeeccccCCCCCCccccccHHHHHHHHHHHHhhcC
Q psy17828 638 VVVHPLVLLSVVDHFNRMSKIGNQKRVVGVLLGCWKGKGILDVSNSFAVPFDEDDKDNSVWFLDHDYLENMYGMFKKVNA 717 (1061)
Q Consensus 638 V~VHPLVLLsIsDH~tR~~~~~~~~rVvGvLLG~~~g~gtVEVTNSFaVP~eEde~d~~v~~lD~~Y~e~MlemfKkVnp 717 (1061)
+.|...++..|+.|..+ +.+..++|.|+|...++ +..|+..|++|-.... +..+.+|+..+.+..+..++ .
T Consensus 2 l~i~~~~l~~i~~ha~~----~~p~E~cGlL~G~~~~~-~~~v~~~~p~~n~~~~--~~~f~~dp~~~~~~~~~~~~--~ 72 (146)
T 2kks_A 2 ITLTKKQMEEMLAHARQ----ALPNEACGLLGGRRDGD-DRWVERVYPLNNLDQS--PEHFSMDPREQLTAVKDMRK--N 72 (146)
T ss_dssp EEEEHHHHHHHHHHHHH----HTTSCEEEEEEEEEETT-EEEEEEEECCCCCSCC--SSSCCCCHHHHHHHHHHHHH--H
T ss_pred EEECHHHHHHHHHHHHh----cCCcceEEEEEEEEcCC-CcEEEEEEECCCcCCC--CceEEECHHHHHHHHHHHHH--C
Confidence 56778899999999876 45789999999998754 5889999999854433 23467888777666655544 3
Q ss_pred CCceEEEEecCCC----CCcccHHHHHHHHhhCCCcEEEEEcCCCCCCCcceEEEEec
Q psy17828 718 REKVVGWYHTGPK----LHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVV 771 (1061)
Q Consensus 718 ~E~VVGWYsTGp~----ls~~Dl~Ihe~f~~~~~nPI~LivDPs~ss~gLplKAYrlv 771 (1061)
.+.+||||||+|. ++..|+... ..+..+++|+.+.. .....++||++.
T Consensus 73 g~~ivG~~HSHP~~~~~PS~~D~~~~-----~~~~~~~lIvs~~~-~~~~~~~af~~~ 124 (146)
T 2kks_A 73 GWVMLGNFHSHPATPARPSAEDKRLA-----FDPSLSYLIISLAE-PQKPVCKSFLIK 124 (146)
T ss_dssp TCEEEEEEEEESSSCSSCCHHHHTTC-----CSSSCEEEEEECSC-SSSCEEEEEEEC
T ss_pred CCEEEEEEeCCCcCCCCCCHHHHHhh-----hcCCCeEEEEEccC-CCceEEEEEEEe
Confidence 5799999999885 566665421 12455788887643 123669999984
No 11
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=98.34 E-value=5.8e-07 Score=89.05 Aligned_cols=119 Identities=18% Similarity=0.179 Sum_probs=81.3
Q ss_pred EeehhHhhHHHHHhhccccCCceeEEEEEeeEEecCcEEEEEEEeeccccCCCCCCccccccHHHHHHHHHHHHhhcCCC
Q psy17828 640 VHPLVLLSVVDHFNRMSKIGNQKRVVGVLLGCWKGKGILDVSNSFAVPFDEDDKDNSVWFLDHDYLENMYGMFKKVNARE 719 (1061)
Q Consensus 640 VHPLVLLsIsDH~tR~~~~~~~~rVvGvLLG~~~g~gtVEVTNSFaVP~eEde~d~~v~~lD~~Y~e~MlemfKkVnp~E 719 (1061)
|...++..|+.|..+ +.+..++|.|+|....++++.|+..|++|-...+.....+.+|+..+..+.+..++. ++
T Consensus 3 i~~~~l~~i~~ha~~----~~p~E~cGlL~G~~~~~~~~~v~~~~p~~n~~~~~~~~~f~~dp~~~~~~~~~~~~~--g~ 76 (153)
T 2kcq_A 3 TTPDILDQIRVHGAD----AYPEEGCGFLLGTVTDDGDNRVAALHRATNRRSEQRTRRYELTADDYRAADAAAQEQ--GL 76 (153)
T ss_dssp CCHHHHHHHHHHHHH----HTTSCCCEEEEEEECTTSCEEEEEEEESSCCCCCCCSCCSSCCCCSHHHHHHHHHHH--TC
T ss_pred eCHHHHHHHHHHHHh----cCCcceEEEEEEeeccCCCeEEEEEEECCCCCCCCCCcEEEECHHHHHHHHHHHHHC--CC
Confidence 566789999999977 356899999999985234688999999986511111233567765555555555443 58
Q ss_pred ceEEEEecCCC----CCcccHHHHHHHHhhCCCcEEEEEcCCCCCCC-cceEEEEec
Q psy17828 720 KVVGWYHTGPK----LHQNDIQINELIRRYCTNSVLVIIDAKPKELG-LPTEAYRVV 771 (1061)
Q Consensus 720 ~VVGWYsTGp~----ls~~Dl~Ihe~f~~~~~nPI~LivDPs~ss~g-LplKAYrlv 771 (1061)
.+||||||+|. ++..|+.. . ..+..++||+.+.. ++ ..++||++.
T Consensus 77 ~ivG~yHSHP~~~~~PS~~D~~~--~---~~~~~~~lIvs~~~--~~~~~~~af~~~ 126 (153)
T 2kcq_A 77 DVVGVYHSHPDHPARPSATDLEE--A---TFPGFTYVIVSVRD--GAPEALTAWALA 126 (153)
T ss_dssp EEEEEEEECSSSSSSCCHHHHHT--C---CCTTSEEEEEEEET--TEEEEEEEEEEC
T ss_pred eEEEEEeCCCCCCCCCCHHHHHh--h---hcCCCeEEEEECCC--CCccEEEEEEEe
Confidence 99999999985 56666532 1 23456888886532 22 458999985
No 12
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=3.2e-07 Score=100.87 Aligned_cols=176 Identities=14% Similarity=0.207 Sum_probs=122.5
Q ss_pred ccccccCCCCccccccc---cccccccccceeeeecCCCCCcceecccCcCCCCCCccceeeeeccCCCC----CCchHH
Q psy17828 806 FLCGRSSRGGKVGRIRC---RSHFSTTGVLSIRRIFNPIGTWTFIRIPTTTWPSRAREKVVGWYHTGPKL----HQNDIQ 878 (1061)
Q Consensus 806 ~~~g~~~~~g~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~m~~L~qKVNPkE~IVGWYsTGsel----t~~s~l 878 (1061)
+|+|....|+.+.+++| .+.-+.+.+-. .|.--...|.++++++|++|.|||||+|++.+ +..|..
T Consensus 52 lLlG~~~~~~~v~Vt~~f~~P~~~~~~~v~~-------~d~~y~~~m~~~~~~v~~~~~vVGWYhShP~~~~~~S~~Di~ 124 (306)
T 4b4t_V 52 LMLGEFVDDYTVNVVDVFAMPQSGTGVSVEA-------VDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVN 124 (306)
T ss_dssp EEEEEEETTTEEEEEEEECCCCEESSSCEEC-------CCHHHHHHHHHHHHHHSCCCCCSEEEEECCSSSCCCCHHHHH
T ss_pred EEeeEEcCCeEEEEEEEEeCCcCCCCCchhc-------CCHHHHHHHHHHHHHhCCCcceeeEEecCCCCCCcCCHHHHH
Confidence 68888766777888888 44444443321 12111257999999999999999999998864 567888
Q ss_pred HHHHHHhhcCCceEEEEcCCCC-CCCCCceeEEEeeecc----C--------CC-----------CcceeeEEeeccccc
Q psy17828 879 INELIRRYCTNSVLVIIDAKPK-ELGLPTEAYRVVDEVH----D--------DG-----------SPTTKTFDHVPSEIG 934 (1061)
Q Consensus 879 IHefys~~~~~PIhL~VDt~~~-~~~LPi~AYvsv~ev~----~--------dG-----------s~~~k~Fv~VP~~I~ 934 (1061)
.|..|...++++|+|++|+... .+.+++.||...+... . .| ....+.|.++|+++.
T Consensus 125 tq~~yQ~~~~~~V~lV~Dp~~t~~G~~~i~Afr~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~yy~l~i~~~ 204 (306)
T 4b4t_V 125 TQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDTGALINNLEPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYH 204 (306)
T ss_dssp HHHHHHHHCSSCEEEEECSSSSSSCSSCEEEEECCHHHHHHCCCCCSCC----------------------CEEECSCCC
T ss_pred HHHHHHhcCCCcEEEEECCCcCCCCceeeeEEEecCccccccccCcccccccccccCchhhhhhhccccceEEEeeeEEE
Confidence 8888999999999999999754 4678999998764310 0 00 011246999999999
Q ss_pred cccccccccccccccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17828 935 AEEAEEVGVEHLLRDIKDTTVGSLSQRVTNQLMGLKGLNQQIKEIEKYVGQVSRY 989 (1061)
Q Consensus 935 aeEAErIgVEhLlr~i~dat~s~L~s~l~~~~~aLk~L~~rL~~I~~YLd~V~~g 989 (1061)
..+.|+..++.|.+..-..+. .+.+-........+.+..+++.+..|.+.|.++
T Consensus 205 ks~le~~~L~~L~~~~w~~~l-~~~~~~~~~~~~~~~i~~m~~~~~~y~k~v~~e 258 (306)
T 4b4t_V 205 KTAKETKMLMNLHKEQWQSGL-KMYDYEEKEESNLAATKSMVKIAEQYSKRIEEE 258 (306)
T ss_dssp CCSSCTHHHHHHHHC-----------CHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred eCcHHHHHHHHHHhccccccc-ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999998875432221 122334455567788888999999999999876
No 13
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=97.49 E-value=0.00021 Score=68.34 Aligned_cols=105 Identities=12% Similarity=0.122 Sum_probs=66.5
Q ss_pred eEEEeehhHhhHHHHHhhccccCCceeEEEEEeeEEecCcEEEEEEEeeccccCCCCCCccccccHHHHHHHHHHHHhhc
Q psy17828 637 KVVVHPLVLLSVVDHFNRMSKIGNQKRVVGVLLGCWKGKGILDVSNSFAVPFDEDDKDNSVWFLDHDYLENMYGMFKKVN 716 (1061)
Q Consensus 637 ~V~VHPLVLLsIsDH~tR~~~~~~~~rVvGvLLG~~~g~gtVEVTNSFaVP~eEde~d~~v~~lD~~Y~e~MlemfKkVn 716 (1061)
.+.|...++..|+.|..+ ..+..++|.|+|.. + .|+..|++| ..... + ...|...|..
T Consensus 3 ~v~i~~~~l~~i~~ha~~----~~P~E~cGlL~g~~---~--~v~~~~~~p-~~~~~-~-----~~~f~~~~~~------ 60 (124)
T 1oi0_A 3 SMKISRGLLKTILEAAKS----AHPDEFIALLSGSK---D--VMDELIFLP-FVSGS-V-----SAVIHLDMLP------ 60 (124)
T ss_dssp SCEECHHHHHHHHHHHHH----HTTSCCEEEEEEST---T--EECEEEECC-CCC-------------------------
T ss_pred EEEEcHHHHHHHHHHHHh----cCCCeeEEEEeccc---C--EEEEEEECC-CCCCC-c-----Cceeeeeecc------
Confidence 356788899999999977 45789999999985 2 588999999 43321 1 1122222222
Q ss_pred CCCceEEEEecCCC----CCcccHHHHHHHHhhCCCcEEEEEcCCCCCCCcceEEEEe
Q psy17828 717 AREKVVGWYHTGPK----LHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRV 770 (1061)
Q Consensus 717 p~E~VVGWYsTGp~----ls~~Dl~Ihe~f~~~~~nPI~LivDPs~ss~gLplKAYrl 770 (1061)
.++.+||||||+|. ++..|+.... . +..+++|+.+... .-.+++|+.
T Consensus 61 ~~~~ivG~~HSHP~~~~~PS~~D~~~~~----~-~~~~~lIvs~~~~--~~~~~~f~~ 111 (124)
T 1oi0_A 61 IGMKVFGTVHSHPSPSCRPSEEDLSLFT----R-FGKYHIIVCYPYD--ENSWKCYNR 111 (124)
T ss_dssp CCCEEEEEEEEESSSCCSCCHHHHHHHH----H-SCSEEEEEETTCC--TTCEEEEET
T ss_pred CCCEEEEEEEECcCCCCccCHHHHHhhh----c-CCCEEEEEEccCC--CceEEEEec
Confidence 56999999999885 5666665422 1 4567888765321 234667655
No 14
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=95.89 E-value=0.0039 Score=66.04 Aligned_cols=97 Identities=18% Similarity=0.254 Sum_probs=56.7
Q ss_pred ceecccCccCccc--CCCccEEEECCCccccccCCCCCC-ChHH-------HhcCCccccCCCcEEEEecCccchHHHHH
Q psy17828 339 WIQCDLRYLDMTV--LGKFAVIMADPPWDIHMELPYGTM-SDDE-------MRQLGIPQLQDEGLLFLWVTGRAMELGRE 408 (1061)
Q Consensus 339 ~i~cDlr~~d~~~--lgkFdvIlaDPPW~~~~~~~Y~tm-s~de-------I~~LPV~~La~~g~LFLWvT~~~Le~g~e 408 (1061)
.++.|...+ +.. .++||+|++|||+.... ..|+.+ +.++ +...-.+-|.++|.+|+|...........
T Consensus 7 l~~gD~~~~-l~~l~~~~vdlI~~DPPY~~~~-~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d~~~~~~~~ 84 (260)
T 1g60_A 7 IHQMNCFDF-LDQVENKSVQLAVIDPPYNLSK-ADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQ 84 (260)
T ss_dssp EEECCHHHH-HHHSCTTCEEEEEECCCCSSCS-SGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHHHHHHHH
T ss_pred EEechHHHH-HHhccccccCEEEECCCCCCCc-ccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCcHHHHHHHH
Confidence 466665431 111 25899999999997531 124433 2221 11111123567999999976544444556
Q ss_pred HhhccceeccceeEEEc----CC---cccccCeE-EEe
Q psy17828 409 CLKLFMLQDEGLLFLWV----TG---RAMELGRE-CLK 438 (1061)
Q Consensus 409 lL~~WGf~~et~~ivWV----tG---~~l~~~kE-CLv 438 (1061)
++..+||..... |+|. +| +.+..++| ||+
T Consensus 85 ~~~~~gf~~~~~-iiW~K~~~~~~~~~~~~~~hE~Il~ 121 (260)
T 1g60_A 85 YLVSKGMIFQNW-ITWDKRDGMGSAKRRFSTGQETILF 121 (260)
T ss_dssp HHHHTTCEEEEE-EEECCCCSCCCCSSSCBCCCEEEEE
T ss_pred HHHhhccceeEE-EEEEecCCCccccCccccCCcEEEE
Confidence 777778773222 9998 22 35677788 776
No 15
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=95.68 E-value=0.0078 Score=66.01 Aligned_cols=87 Identities=15% Similarity=0.218 Sum_probs=55.2
Q ss_pred CceecccCc-cCcccCCCccEEEECCCccccccCCCCCCChHHHhcCC-------ccccCCCcEEEEecCcc--------
Q psy17828 338 QWIQCDLRY-LDMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLG-------IPQLQDEGLLFLWVTGR-------- 401 (1061)
Q Consensus 338 q~i~cDlr~-~d~~~lgkFdvIlaDPPW~~~~~~~Y~tms~deI~~LP-------V~~La~~g~LFLWvT~~-------- 401 (1061)
..++.|... +..-.-++||+|++|||+.......|+.++.++...+- -.-|.++|.+|+|+...
T Consensus 16 ~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~~~~ 95 (323)
T 1boo_A 16 SMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPAR 95 (323)
T ss_dssp EEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEEEE
T ss_pred eEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCCccc
Confidence 357777654 22112358999999999976554567665444432221 12345799999988754
Q ss_pred ---chHHHHHHhhccceeccceeEEEc
Q psy17828 402 ---AMELGRECLKLFMLQDEGLLFLWV 425 (1061)
Q Consensus 402 ---~Le~g~elL~~WGf~~et~~ivWV 425 (1061)
.+....++++..||..... ++|.
T Consensus 96 ~~~~~~~i~~~~~~~Gf~~~~~-iiW~ 121 (323)
T 1boo_A 96 SIYNFRVLIRMIDEVGFFLAED-FYWF 121 (323)
T ss_dssp CCHHHHHHHHHHHTTCCEEEEE-EEEE
T ss_pred ccchHHHHHHHHHhCCCEEEEE-EEEe
Confidence 2445567788999983322 8997
No 16
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=93.60 E-value=0.023 Score=62.54 Aligned_cols=94 Identities=14% Similarity=0.150 Sum_probs=54.6
Q ss_pred ecccCcc-CcccCCCccEEEECCCcccccc-----CCCCCCChHHHhcCCccccCCCcEEEEecCccch--------HHH
Q psy17828 341 QCDLRYL-DMTVLGKFAVIMADPPWDIHME-----LPYGTMSDDEMRQLGIPQLQDEGLLFLWVTGRAM--------ELG 406 (1061)
Q Consensus 341 ~cDlr~~-d~~~lgkFdvIlaDPPW~~~~~-----~~Y~tms~deI~~LPV~~La~~g~LFLWvT~~~L--------e~g 406 (1061)
+.|...+ ..-.-++||+|++|||+..... ..|-.+-.+-|..+ -.-|.++|.+|+|+..... ...
T Consensus 44 ~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~-~rvLk~~G~i~i~~~~~~~~~~~~~~l~~l 122 (319)
T 1eg2_A 44 VCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEA-ERVLSPTGSIAIFGGLQYQGEAGSGDLISI 122 (319)
T ss_dssp ECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHH-HHHEEEEEEEEEEECSCCCCCTTBCCHHHH
T ss_pred CCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHH-HHHcCCCeEEEEEcCcccccccccccHHHH
Confidence 7777542 1111248999999999975310 11111111222211 1235679999999886544 555
Q ss_pred HHHhhccc-ee--ccceeEEEc--C----CcccccCeE-EEe
Q psy17828 407 RECLKLFM-LQ--DEGLLFLWV--T----GRAMELGRE-CLK 438 (1061)
Q Consensus 407 ~elL~~WG-f~--~et~~ivWV--t----G~~l~~~kE-CLv 438 (1061)
.+.+..+| |. .. |+|. . ++.++..+| ||+
T Consensus 123 ~~~i~~~G~~~~~~~---IIW~K~~~~~~~~~~~~~hE~ILv 161 (319)
T 1eg2_A 123 ISHMRQNSKMLLANL---IIWNYPNGMSAQRFFANRHEEIAW 161 (319)
T ss_dssp HHHHHHHCCCEEEEE---EEEECSCCCCCSSSCCCCEEEEEE
T ss_pred HHHHhCcccceeEEE---EEEECCCCccccCeecCCCcEEEE
Confidence 55666655 55 66 9998 1 236677788 776
No 17
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=91.71 E-value=0.3 Score=53.26 Aligned_cols=112 Identities=17% Similarity=0.337 Sum_probs=71.5
Q ss_pred hHHHHHhhccccCCceeEEEEEeeEEec--CcEEEEEEEeeccccCCCCCCcc--ccccHHHHHHHHHHHHhhcCCCceE
Q psy17828 647 SVVDHFNRMSKIGNQKRVVGVLLGCWKG--KGILDVSNSFAVPFDEDDKDNSV--WFLDHDYLENMYGMFKKVNAREKVV 722 (1061)
Q Consensus 647 sIsDH~tR~~~~~~~~rVvGvLLG~~~g--~gtVEVTNSFaVP~eEde~d~~v--~~lD~~Y~e~MlemfKkVnp~E~VV 722 (1061)
+|++-+-..+ .....+.|.|.|.-.. .++.||+.---+|...+.+.... ..-.++|+ -++.++
T Consensus 46 nllkkFi~IA--DlrTq~~G~LyG~s~~d~~~vkeI~~ivipPQ~gt~~sv~~~~~~p~~~~l-----------~dLe~L 112 (273)
T 2p8r_A 46 NILKKFITIS--DLRTQIAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHELL-----------RDFEPL 112 (273)
T ss_dssp HHHHHHHHTS--CSSSCCEEEEEEECCTTCTTEEEEEEEECCSBEECSSCEECCSSCCCCTTT-----------TTSEEE
T ss_pred HHHHHHHHHh--hccceEEEEEeccCCCCCCCeEEEEEEEECCccCCCceEECCCcCcchhhh-----------cccccc
Confidence 4455555543 2345799999999742 25677876555565433221000 00122343 688999
Q ss_pred EEEecCC----CCCcccHHHHHHHHhh----C-CCcEEEEEcCCCCCCCcceEEEEeccc
Q psy17828 723 GWYHTGP----KLHQNDIQINELIRRY----C-TNSVLVIIDAKPKELGLPTEAYRVVDE 773 (1061)
Q Consensus 723 GWYsTGp----~ls~~Dl~Ihe~f~~~----~-~nPI~LivDPs~ss~gLplKAYrlv~e 773 (1061)
||-||.| .+++.|+..|..|+.- . +.+|+++.=+ +.+...+.||+++++
T Consensus 113 GWIHTqp~e~~~LSs~Dl~tH~~~~~~~~~~~~~e~I~Ivcsf--tpgs~sl~af~LT~~ 170 (273)
T 2p8r_A 113 GWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSF--TPGSVSLTAYKLTPS 170 (273)
T ss_dssp EEEEEESSCCSSCCHHHHHHHHHHHHHCTTCCTTTCEEEEEEE--ETTEEEEEEEEECHH
T ss_pred ceEeeCCCCCCCcCHHHHHHHHHHHhcccccCCCceEEEEEec--CCCCceeEEEEcChH
Confidence 9999976 4899999999888653 2 3778877633 344578999999975
No 18
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=91.45 E-value=0.12 Score=55.60 Aligned_cols=85 Identities=14% Similarity=0.127 Sum_probs=47.8
Q ss_pred CceecccCcc-CcccCCCccEEEECCCccccccCCCCCCC--------h-------HHHhcCCccccCCCcEEEEecCcc
Q psy17828 338 QWIQCDLRYL-DMTVLGKFAVIMADPPWDIHMELPYGTMS--------D-------DEMRQLGIPQLQDEGLLFLWVTGR 401 (1061)
Q Consensus 338 q~i~cDlr~~-d~~~lgkFdvIlaDPPW~~~~~~~Y~tms--------~-------deI~~LPV~~La~~g~LFLWvT~~ 401 (1061)
.+++.|...+ ..-.-++||+|+.|||+.... .|.... . .++...--.-|.++|.+|+++...
T Consensus 23 ~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~--~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~ 100 (297)
T 2zig_A 23 RLHVGDAREVLASFPEASVHLVVTSPPYWTLK--RYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDV 100 (297)
T ss_dssp EEEESCHHHHHTTSCTTCEEEEEECCCCCCCC---------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCE
T ss_pred EEEECcHHHHHhhCCCCceeEEEECCCCCCcc--ccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCC
Confidence 4688887763 211225899999999995321 232111 0 111111112245699999998743
Q ss_pred c-------------h-HHHHHHhhccceeccceeEEEc
Q psy17828 402 A-------------M-ELGRECLKLFMLQDEGLLFLWV 425 (1061)
Q Consensus 402 ~-------------L-e~g~elL~~WGf~~et~~ivWV 425 (1061)
. + +...++|+..||..... |+|.
T Consensus 101 ~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~~-iiW~ 137 (297)
T 2zig_A 101 AVARRRFGRHLVFPLHADIQVRCRKLGFDNLNP-IIWH 137 (297)
T ss_dssp EEECC----EEEECHHHHHHHHHHHTTCEEEEE-EEEE
T ss_pred ccccccCCcccccccHHHHHHHHHHcCCeeecc-EEEe
Confidence 2 1 23457788899983322 8998
No 19
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=91.01 E-value=0.73 Score=49.77 Aligned_cols=120 Identities=16% Similarity=0.210 Sum_probs=73.7
Q ss_pred EEEeehhHhhHHHHHhhccccCCceeEEEEEeeEEecC--cEEEEEEEeeccccCCCCCCcc--ccccHHHHHHHHHHHH
Q psy17828 638 VVVHPLVLLSVVDHFNRMSKIGNQKRVVGVLLGCWKGK--GILDVSNSFAVPFDEDDKDNSV--WFLDHDYLENMYGMFK 713 (1061)
Q Consensus 638 V~VHPLVLLsIsDH~tR~~~~~~~~rVvGvLLG~~~g~--gtVEVTNSFaVP~eEde~d~~v--~~lD~~Y~e~MlemfK 713 (1061)
..|=|- +|++-+...+ .....+.|.|.|.-..+ ++.||+.---+|...+.+.... ..--++|.+
T Consensus 39 t~vlPk---nLlkkFi~IA--D~~Tq~cG~LyG~~~~d~~~v~eI~~ivippQ~gt~~s~~~~~~~p~~~~~~------- 106 (254)
T 2og4_A 39 VYVLPK---NLLKKFIEIS--DVKIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPD------- 106 (254)
T ss_dssp EEEEEH---HHHHHHHHTS--CSSSCCEEEEEEEECSSCTTEEEEEEEECCCEEEETTEEEECCCCCCTTSTT-------
T ss_pred EEEcCH---HHHHHHHHHh--hccceEEEEEEccCCCCCCCeEEEEEEEECCccCCCceEECCCcCccccchh-------
Confidence 344454 3444444443 23356999999997432 4677865555554332211000 000122321
Q ss_pred hhcCCCceEEEEecCC----CCCcccHHHHHHHHh-hCCCcEEEEEcCCCCCCCcceEEEEeccc
Q psy17828 714 KVNAREKVVGWYHTGP----KLHQNDIQINELIRR-YCTNSVLVIIDAKPKELGLPTEAYRVVDE 773 (1061)
Q Consensus 714 kVnp~E~VVGWYsTGp----~ls~~Dl~Ihe~f~~-~~~nPI~LivDPs~ss~gLplKAYrlv~e 773 (1061)
--++..+||=||.| .+++.|+..|..|+. ..+.+|+++.=+ +.+...+.||+++++
T Consensus 107 --l~dLe~LGWIHTqptq~~fLSs~Dl~tH~~~~~~~~~eaIaIvcsf--tpgs~sl~af~LT~~ 167 (254)
T 2og4_A 107 --TEGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFS--TPGSVSLSAYNLTDE 167 (254)
T ss_dssp --CTTCEEEEEEEEESSCCSSCCHHHHHHHHHHHTTTCTTCEEEEEEE--ETTEEEEEEEEECHH
T ss_pred --hcCCEecceEeeCCCCCcccCHHHHHHHHHHHHhcCCCeEEEEEec--CCCCceeEEEEcChh
Confidence 26789999999976 489999999988876 557888887643 334577899999976
No 20
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=89.25 E-value=0.17 Score=52.81 Aligned_cols=81 Identities=10% Similarity=0.120 Sum_probs=50.5
Q ss_pred CceecccCccCccc-CCCccEEEECCCccccc-------------cCCCCCCChHHHhcCCccccCCCcEEEEecCccch
Q psy17828 338 QWIQCDLRYLDMTV-LGKFAVIMADPPWDIHM-------------ELPYGTMSDDEMRQLGIPQLQDEGLLFLWVTGRAM 403 (1061)
Q Consensus 338 q~i~cDlr~~d~~~-lgkFdvIlaDPPW~~~~-------------~~~Y~tms~deI~~LPV~~La~~g~LFLWvT~~~L 403 (1061)
+++++|++.+.... .++||+|++|||+-... ..+....+.+++.+-=...|.++|.+++-.....+
T Consensus 102 ~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 181 (259)
T 3lpm_A 102 EIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERL 181 (259)
T ss_dssp EEECSCGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTH
T ss_pred EEEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHH
Confidence 58899998876433 47999999999985320 01111122233333323345678888876666777
Q ss_pred HHHHHHhhccceecc
Q psy17828 404 ELGRECLKLFMLQDE 418 (1061)
Q Consensus 404 e~g~elL~~WGf~~e 418 (1061)
....+.+++.||...
T Consensus 182 ~~~~~~l~~~~~~~~ 196 (259)
T 3lpm_A 182 LDIIDIMRKYRLEPK 196 (259)
T ss_dssp HHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHCCCceE
Confidence 888899999999844
No 21
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=81.96 E-value=1.3 Score=51.95 Aligned_cols=101 Identities=13% Similarity=0.162 Sum_probs=64.5
Q ss_pred ceeEEEEEeeEEecC--cEEEEEEEeeccccCCCCCCcccc-ccHH---HHHHHHHHHHhhcCCCceEEEEecCC----C
Q psy17828 661 QKRVVGVLLGCWKGK--GILDVSNSFAVPFDEDDKDNSVWF-LDHD---YLENMYGMFKKVNAREKVVGWYHTGP----K 730 (1061)
Q Consensus 661 ~~rVvGvLLG~~~g~--gtVEVTNSFaVP~eEde~d~~v~~-lD~~---Y~e~MlemfKkVnp~E~VVGWYsTGp----~ 730 (1061)
..++.|.|.|....+ ++.||+.---+|.-.+.+....-. -.++ | -.+..++||-||.| .
T Consensus 368 rTQicGyLyG~sp~dn~nVkEI~cIVipPQ~Gt~~sv~lp~lp~he~~~~-----------l~dLe~LGWIHTqp~et~f 436 (565)
T 3sbg_A 368 KIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPD-----------TEGLELLGWIHTQTEELKF 436 (565)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEEEEECCCEEECSSCEEECCCCCCTTSTT-----------CTTCEEEEEEEEESSCCSS
T ss_pred cceeEEEEecCCCCCCCCeEEEEEEEECCccCCCceEECCCCCccccccc-----------cccCEecceeeecCCcccc
Confidence 346999999997643 457776555555544332210000 0011 2 26789999999976 4
Q ss_pred CCcccHHHHHHHHhhC-CCcEEEEEcCCCCCCCcceEEEEecccc
Q psy17828 731 LHQNDIQINELIRRYC-TNSVLVIIDAKPKELGLPTEAYRVVDED 774 (1061)
Q Consensus 731 ls~~Dl~Ihe~f~~~~-~nPI~LivDPs~ss~gLplKAYrlv~e~ 774 (1061)
+++.|+..|.-+...+ .+.|.+. .+.+.|.+.+.||.+++++
T Consensus 437 LSs~Dl~THakl~~~n~~~~I~it--vsftPGS~SLsAy~LT~eG 479 (565)
T 3sbg_A 437 MAASEVATHSKLFADKKRDCIDIS--IFSTPGSVSLSAYNLTDEG 479 (565)
T ss_dssp CCHHHHHHHHHHHSSSCTTCEEEE--EEEETTEEEEEEEEECHHH
T ss_pred cCHHHHHHHHHHHHhCCCCeEEEE--EEecCCceEEEEEecCHhH
Confidence 8999999997664443 3445444 3445577999999999874
No 22
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=78.86 E-value=1.5 Score=42.88 Aligned_cols=79 Identities=16% Similarity=0.088 Sum_probs=46.7
Q ss_pred CCceecccCccCccc----CCCccEEEECCCccccccCC--------CC-CCCh----------HHHhcCCccccCCCcE
Q psy17828 337 PQWIQCDLRYLDMTV----LGKFAVIMADPPWDIHMELP--------YG-TMSD----------DEMRQLGIPQLQDEGL 393 (1061)
Q Consensus 337 pq~i~cDlr~~d~~~----lgkFdvIlaDPPW~~~~~~~--------Y~-tms~----------deI~~LPV~~La~~g~ 393 (1061)
-+++++|+.. .+.. .++||+|++||||......+ |. .... .++.+-=...|.++|.
T Consensus 81 ~~~~~~d~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 159 (215)
T 4dzr_A 81 VDWAAADGIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRA 159 (215)
T ss_dssp --CCHHHHHH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSE
T ss_pred eEEEEcchHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCe
Confidence 4677888776 3322 37999999999985322110 00 0000 3444444455678998
Q ss_pred -EEEecCccchHHHHHHhh--cccee
Q psy17828 394 -LFLWVTGRAMELGRECLK--LFMLQ 416 (1061)
Q Consensus 394 -LFLWvT~~~Le~g~elL~--~WGf~ 416 (1061)
+++-+.....+.-.++++ .-||.
T Consensus 160 l~~~~~~~~~~~~~~~~l~~~~~gf~ 185 (215)
T 4dzr_A 160 GVFLEVGHNQADEVARLFAPWRERGF 185 (215)
T ss_dssp EEEEECTTSCHHHHHHHTGGGGGGTE
T ss_pred EEEEEECCccHHHHHHHHHHhhcCCc
Confidence 666666666777788999 77886
No 23
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=74.54 E-value=1.7 Score=43.65 Aligned_cols=83 Identities=16% Similarity=0.202 Sum_probs=47.6
Q ss_pred CCCceecccCccCcccCCCccEEEECCCcccccc-C-----------CCCCCChHHHhcCCccccCCCcEEEEecCc--c
Q psy17828 336 PPQWIQCDLRYLDMTVLGKFAVIMADPPWDIHME-L-----------PYGTMSDDEMRQLGIPQLQDEGLLFLWVTG--R 401 (1061)
Q Consensus 336 Ppq~i~cDlr~~d~~~lgkFdvIlaDPPW~~~~~-~-----------~Y~tms~deI~~LPV~~La~~g~LFLWvT~--~ 401 (1061)
.-.++++|++.+.--..++||+|++|||+..... . .++.-...++.+-=...|.++|.+++.+.. .
T Consensus 105 ~v~~~~~d~~~~~~~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 184 (230)
T 3evz_A 105 NVRLVKSNGGIIKGVVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEK 184 (230)
T ss_dssp CCEEEECSSCSSTTTCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHH
T ss_pred CcEEEeCCchhhhhcccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHh
Confidence 4578899976543322379999999999853211 0 000000022222222335678888876543 3
Q ss_pred chHHHHHHhhccceecc
Q psy17828 402 AMELGRECLKLFMLQDE 418 (1061)
Q Consensus 402 ~Le~g~elL~~WGf~~e 418 (1061)
..+.-++.|+..||+.+
T Consensus 185 ~~~~~~~~l~~~g~~~~ 201 (230)
T 3evz_A 185 LLNVIKERGIKLGYSVK 201 (230)
T ss_dssp HHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHcCCceE
Confidence 45667789999999844
No 24
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=74.50 E-value=2.8 Score=43.95 Aligned_cols=78 Identities=9% Similarity=0.023 Sum_probs=44.2
Q ss_pred CceecccCccCc------ccCCCccEEEECCCccccc-----------cCCCCCCChHHHhcCCccccCCCcEEEEecCc
Q psy17828 338 QWIQCDLRYLDM------TVLGKFAVIMADPPWDIHM-----------ELPYGTMSDDEMRQLGIPQLQDEGLLFLWVTG 400 (1061)
Q Consensus 338 q~i~cDlr~~d~------~~lgkFdvIlaDPPW~~~~-----------~~~Y~tms~deI~~LPV~~La~~g~LFLWvT~ 400 (1061)
.+++.|+..+.. -..++||+|+++|||.... ..+......+++.+.=..-|.++|.+++-...
T Consensus 93 ~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 172 (260)
T 2ozv_A 93 EVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP 172 (260)
T ss_dssp EEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred EEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH
Confidence 478899987621 1236899999999996431 11122223344433222345568888776665
Q ss_pred cchHHHHHHhhcccee
Q psy17828 401 RAMELGRECLKLFMLQ 416 (1061)
Q Consensus 401 ~~Le~g~elL~~WGf~ 416 (1061)
..++.-.+.|++- |.
T Consensus 173 ~~~~~~~~~l~~~-~~ 187 (260)
T 2ozv_A 173 QSVAEIIAACGSR-FG 187 (260)
T ss_dssp GGHHHHHHHHTTT-EE
T ss_pred HHHHHHHHHHHhc-CC
Confidence 6666667777763 65
No 25
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=71.66 E-value=1.7 Score=42.89 Aligned_cols=67 Identities=12% Similarity=0.178 Sum_probs=40.8
Q ss_pred CCceecccCccCcccCCCccEEEECCCccccccCCCCCCChHHHhcCCccccCCCcEEEEecCccchHHHHHHhhcccee
Q psy17828 337 PQWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVTGRAMELGRECLKLFMLQ 416 (1061)
Q Consensus 337 pq~i~cDlr~~d~~~lgkFdvIlaDPPW~~~~~~~Y~tms~deI~~LPV~~La~~g~LFLWvT~~~Le~g~elL~~WGf~ 416 (1061)
-.++++|+..++ ++||+|++||||.......... -..++.++ -|.+|+++.......-.++++.+| +
T Consensus 97 ~~~~~~d~~~~~----~~~D~v~~~~p~~~~~~~~~~~-~l~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~~g-~ 163 (200)
T 1ne2_A 97 VNFMVADVSEIS----GKYDTWIMNPPFGSVVKHSDRA-FIDKAFET-------SMWIYSIGNAKARDFLRREFSARG-D 163 (200)
T ss_dssp SEEEECCGGGCC----CCEEEEEECCCC-------CHH-HHHHHHHH-------EEEEEEEEEGGGHHHHHHHHHHHE-E
T ss_pred CEEEECcHHHCC----CCeeEEEECCCchhccCchhHH-HHHHHHHh-------cCcEEEEEcCchHHHHHHHHHHCC-C
Confidence 468889988764 7999999999997432100000 01112111 267888886656666778888888 6
No 26
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=70.64 E-value=3.7 Score=39.98 Aligned_cols=77 Identities=14% Similarity=0.187 Sum_probs=45.2
Q ss_pred CceecccCccCcccCCCccEEEECCCccccccC--CCCCCC-hHHHhcCCccccCCCcEEEEecC-ccchHHHHHHhhcc
Q psy17828 338 QWIQCDLRYLDMTVLGKFAVIMADPPWDIHMEL--PYGTMS-DDEMRQLGIPQLQDEGLLFLWVT-GRAMELGRECLKLF 413 (1061)
Q Consensus 338 q~i~cDlr~~d~~~lgkFdvIlaDPPW~~~~~~--~Y~tms-~deI~~LPV~~La~~g~LFLWvT-~~~Le~g~elL~~W 413 (1061)
.|+++|+.. .+ ..++||+|+++||+...... ..+... .+-+..+ +..+ ++|.+++.+. ....+..+++|+.-
T Consensus 64 ~~~~~d~~~-~~-~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~ 139 (170)
T 3q87_B 64 NLVRADLLC-SI-NQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRF-VDAV-TVGMLYLLVIEANRPKEVLARLEER 139 (170)
T ss_dssp CEEECSTTT-TB-CGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHH-HHHC-CSSEEEEEEEGGGCHHHHHHHHHHT
T ss_pred eEEECChhh-hc-ccCCCCEEEECCCCccCCccccccCCcchHHHHHHH-HhhC-CCCEEEEEEecCCCHHHHHHHHHHC
Confidence 588888876 22 22799999999998632211 000000 0111111 1122 7888877654 34566778899999
Q ss_pred ceecc
Q psy17828 414 MLQDE 418 (1061)
Q Consensus 414 Gf~~e 418 (1061)
||+..
T Consensus 140 gf~~~ 144 (170)
T 3q87_B 140 GYGTR 144 (170)
T ss_dssp TCEEE
T ss_pred CCcEE
Confidence 99844
No 27
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=69.81 E-value=3.5 Score=40.66 Aligned_cols=70 Identities=4% Similarity=0.058 Sum_probs=41.3
Q ss_pred CCceecccCccCcccCCCccEEEECCCccccccCCCCCCChHHHhcCCccccCCCcEEEEec--CccchHHHHHHhhccc
Q psy17828 337 PQWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWV--TGRAMELGRECLKLFM 414 (1061)
Q Consensus 337 pq~i~cDlr~~d~~~lgkFdvIlaDPPW~~~~~~~Y~tms~deI~~LPV~~La~~g~LFLWv--T~~~Le~g~elL~~WG 414 (1061)
-.++++|+..++ ++||+|++|||+..... .....-+..+ ..+. |.+|+-+ .....+...+.++..|
T Consensus 99 ~~~~~~d~~~~~----~~~D~v~~~~p~~~~~~----~~~~~~l~~~--~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g 166 (207)
T 1wy7_A 99 FKVFIGDVSEFN----SRVDIVIMNPPFGSQRK----HADRPFLLKA--FEIS--DVVYSIHLAKPEVRRFIEKFSWEHG 166 (207)
T ss_dssp EEEEESCGGGCC----CCCSEEEECCCCSSSST----TTTHHHHHHH--HHHC--SEEEEEEECCHHHHHHHHHHHHHTT
T ss_pred EEEEECchHHcC----CCCCEEEEcCCCccccC----CchHHHHHHH--HHhc--CcEEEEEeCCcCCHHHHHHHHHHCC
Confidence 467888888764 58999999999865321 1111111111 0111 4455444 3345566678889999
Q ss_pred eecc
Q psy17828 415 LQDE 418 (1061)
Q Consensus 415 f~~e 418 (1061)
|+.+
T Consensus 167 ~~~~ 170 (207)
T 1wy7_A 167 FVVT 170 (207)
T ss_dssp EEEE
T ss_pred CeEE
Confidence 9843
No 28
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=64.00 E-value=2.3 Score=46.42 Aligned_cols=70 Identities=19% Similarity=0.286 Sum_probs=43.3
Q ss_pred CCceecccCccCcccCCCccEEEECCCccccccCCCCCCChHHHhcC-------CccccCCCcEEEEecCccchHHHHHH
Q psy17828 337 PQWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQL-------GIPQLQDEGLLFLWVTGRAMELGREC 409 (1061)
Q Consensus 337 pq~i~cDlr~~d~~~lgkFdvIlaDPPW~~~~~~~Y~tms~deI~~L-------PV~~La~~g~LFLWvT~~~Le~g~el 409 (1061)
-+|++.|++.+... .+.||+|++||||..... +..++..+ =...|.++|.+++.+.+. +...+.
T Consensus 256 i~~~~~D~~~~~~~-~~~~D~Ii~npPyg~r~~------~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~--~~~~~~ 326 (354)
T 3tma_A 256 IRFLRADARHLPRF-FPEVDRILANPPHGLRLG------RKEGLFHLYWDFLRGALALLPPGGRVALLTLRP--ALLKRA 326 (354)
T ss_dssp CEEEECCGGGGGGT-CCCCSEEEECCCSCC----------CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH--HHHHHH
T ss_pred eEEEeCChhhCccc-cCCCCEEEECCCCcCccC------CcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH--HHHHHH
Confidence 46889999886543 246999999999965321 11222111 112345688888887654 345667
Q ss_pred hhcccee
Q psy17828 410 LKLFMLQ 416 (1061)
Q Consensus 410 L~~WGf~ 416 (1061)
++ +||+
T Consensus 327 ~~-~g~~ 332 (354)
T 3tma_A 327 LP-PGFA 332 (354)
T ss_dssp CC-TTEE
T ss_pred hh-cCcE
Confidence 77 9998
No 29
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=63.64 E-value=5.7 Score=40.41 Aligned_cols=52 Identities=21% Similarity=0.382 Sum_probs=39.0
Q ss_pred CccceeeeeccCC----CCCCchHHHHHHHHhhcCCceEEEEcCCCCCCCCCceeEEEee
Q psy17828 858 AREKVVGWYHTGP----KLHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVVD 913 (1061)
Q Consensus 858 PkE~IVGWYsTGs----elt~~s~lIHefys~~~~~PIhL~VDt~~~~~~LPi~AYvsv~ 913 (1061)
-.+.+||||+|-+ -+...|...|--|....+..|.|++|+... .+.||....
T Consensus 80 ~~l~~vGwyHSHP~~~~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~~----~~~afrl~~ 135 (178)
T 2znr_A 80 HDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHK----DTGIFRLTN 135 (178)
T ss_dssp HTCEEEEEEEECSSSCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGGT----EEEEEEECH
T ss_pred CCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhcCCEEEEEEcCCCC----cceEEEEEC
Confidence 4678999998853 577778877877766667899999998753 267787543
No 30
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=62.93 E-value=6.8 Score=41.20 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=39.4
Q ss_pred CccceeeeeccC----CCCCCchHHHHHHHHhhcCCceEEEEcCCCCCCCCCceeEEEee
Q psy17828 858 AREKVVGWYHTG----PKLHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVVD 913 (1061)
Q Consensus 858 PkE~IVGWYsTG----selt~~s~lIHefys~~~~~PIhL~VDt~~~~~~LPi~AYvsv~ 913 (1061)
-.+.+||||+|- .-+...|...|.-|....+..|.|++|+... ++.||....
T Consensus 113 ~~l~~vGWyHSHP~~~~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~~~----~lgaFrLtp 168 (211)
T 3rzv_A 113 QGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQ----ETGFFKLTD 168 (211)
T ss_dssp HTCEEEEEEEECTTSCSCCCHHHHHHHHHHHHHCTTCEEEEEETTTT----EEEEEEECH
T ss_pred CCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCC----eeeEEEecc
Confidence 368899999874 3577778887777776677889999997732 678888543
No 31
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=62.48 E-value=17 Score=36.25 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=45.1
Q ss_pred cccccccchHHHHhhhhhhhhHHHHHHHHHHhhccCcEeeecccCCCCceEEEEeehHhHHhHHH
Q psy17828 102 VSLVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINESKDDDNQVEIVSVEHVKLLGMVN 166 (1061)
Q Consensus 102 ~~l~lP~~s~~l~~~~~~~~~~~~v~~lL~k~a~q~lI~i~~~~~~~~~~~i~~~~~~kl~~m~~ 166 (1061)
..+.+|.+-.+|...+.. +++.|..+|.+|..+|+|.+.. . .|+=.|.++|.++.+
T Consensus 175 ~~~~~~~t~~~lA~~lg~--sr~tvsR~l~~l~~~g~I~~~~-----~--~i~i~d~~~L~~~~~ 230 (232)
T 2gau_A 175 ATLSIYLSREELATLSNM--TVSNAIRTLSTFVSERMLALDG-----K--RIKIIDCDRLQKTAR 230 (232)
T ss_dssp SBBSCCCCHHHHHHHTTS--CHHHHHHHHHHHHHTTSEEEET-----T--EEEESCHHHHHHHHH
T ss_pred cEEEcccCHHHHHHHhCC--CHHHHHHHHHHHHHCCCEeeCC-----C--EEEEeCHHHHHHHhh
Confidence 357789999999998876 8899999999999999999873 2 255568888887654
No 32
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=61.06 E-value=10 Score=37.54 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=51.3
Q ss_pred hHHHHHHHHhhcc------------ccccccchHHHHhhhhhhhhHHHHHHHHHHhhccCcEeeecccCCCCceEEEEee
Q psy17828 90 DLELELLEKLCDV------------SLVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINESKDDDNQVEIVSVE 157 (1061)
Q Consensus 90 ~~e~~ll~~L~d~------------~l~lP~~s~~l~~~~~~~~~~~~v~~lL~k~a~q~lI~i~~~~~~~~~~~i~~~~ 157 (1061)
..+.+|...|.+. .+.+|.+-.+|...+.. +++.|..+|.+|..+|+|...+ .+ .|+=.|
T Consensus 138 ~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~--sr~tvsR~l~~l~~~g~I~~~~-----~~-~i~i~d 209 (220)
T 2fmy_A 138 DARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGT--TRQTVSVLLNDFKKMGILERVN-----QR-TLLLKD 209 (220)
T ss_dssp HHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTS--CHHHHHHHHHHHHHTTSEEESS-----SS-EEEESC
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCC--cHHHHHHHHHHHHHCCCEEEcC-----CC-EEEEcC
Confidence 3466666665443 27789999999999976 8999999999999999998841 12 344457
Q ss_pred hHhHHhHHH
Q psy17828 158 HVKLLGMVN 166 (1061)
Q Consensus 158 ~~kl~~m~~ 166 (1061)
.++|.++.+
T Consensus 210 ~~~L~~~~~ 218 (220)
T 2fmy_A 210 LQKLKEFSS 218 (220)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHhc
Confidence 888877654
No 33
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=60.40 E-value=9.8 Score=37.14 Aligned_cols=67 Identities=9% Similarity=0.145 Sum_probs=50.7
Q ss_pred HHHHHHHHhhccc-----------cccccchHHHHhhhhhhhhHHHHHHHHHHhhccCcEeeecccCCCCceEEEEeehH
Q psy17828 91 LELELLEKLCDVS-----------LVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINESKDDDNQVEIVSVEHV 159 (1061)
Q Consensus 91 ~e~~ll~~L~d~~-----------l~lP~~s~~l~~~~~~~~~~~~v~~lL~k~a~q~lI~i~~~~~~~~~~~i~~~~~~ 159 (1061)
.+.+|..+|.+.. +.+|.+-.+|...+.. +++.|..+|.+|..+|+|.+.. .. |+=.|.+
T Consensus 112 ~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~--sr~tvsR~l~~L~~~g~I~~~~-----~~--i~i~d~~ 182 (195)
T 3b02_A 112 LRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATAS--IRESVSKVLADLRREGLIATAY-----RR--VYLLDLA 182 (195)
T ss_dssp HHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTS--CHHHHHHHHHHHHHHTSEEEET-----TE--EEECCHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCC--CHHHHHHHHHHHHHCCCEEecC-----CE--EEEeCHH
Confidence 4566666654422 6788999999999876 8999999999999999999872 22 4455888
Q ss_pred hHHhHHH
Q psy17828 160 KLLGMVN 166 (1061)
Q Consensus 160 kl~~m~~ 166 (1061)
+|.++.+
T Consensus 183 ~L~~~~~ 189 (195)
T 3b02_A 183 ALEREAG 189 (195)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 8887654
No 34
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=60.10 E-value=7.6 Score=38.71 Aligned_cols=66 Identities=14% Similarity=0.317 Sum_probs=49.2
Q ss_pred HHHHHHhhcc-----------ccccccchHHHHhhhhhhhhHHHHHHHHHHhhccCcEeeecccCCCCceEEEEeehHhH
Q psy17828 93 LELLEKLCDV-----------SLVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINESKDDDNQVEIVSVEHVKL 161 (1061)
Q Consensus 93 ~~ll~~L~d~-----------~l~lP~~s~~l~~~~~~~~~~~~v~~lL~k~a~q~lI~i~~~~~~~~~~~i~~~~~~kl 161 (1061)
.+|..+|.+. .+.+|.+-.+|...+.. +++.|..+|.+|..+|+|.+.. .. |+=.|.++|
T Consensus 150 ~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~--sr~tvsR~l~~L~~~g~I~~~~-----~~--i~i~d~~~L 220 (231)
T 3e97_A 150 AALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSS--SRETVSRVLKRLEAHNILEVSP-----RS--VTLLDLAAL 220 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTC--CHHHHHHHHHHHHHTTSEEECS-----SC--EEESCHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCC--cHHHHHHHHHHHHHCCcEEecC-----CE--EEEeCHHHH
Confidence 6666655443 47889999999999976 8899999999999999999873 23 333577888
Q ss_pred HhHHHH
Q psy17828 162 LGMVNE 167 (1061)
Q Consensus 162 ~~m~~~ 167 (1061)
.++..+
T Consensus 221 ~~~a~~ 226 (231)
T 3e97_A 221 EALSFE 226 (231)
T ss_dssp HHCC--
T ss_pred HHHHhc
Confidence 776544
No 35
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=59.79 E-value=9.7 Score=38.70 Aligned_cols=68 Identities=10% Similarity=0.302 Sum_probs=52.3
Q ss_pred HHHHHHHHhhcc------------ccccccchHHHHhhhhhhhhHHHHHHHHHHhhccCcEeeecccCCCCceEEEEeeh
Q psy17828 91 LELELLEKLCDV------------SLVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINESKDDDNQVEIVSVEH 158 (1061)
Q Consensus 91 ~e~~ll~~L~d~------------~l~lP~~s~~l~~~~~~~~~~~~v~~lL~k~a~q~lI~i~~~~~~~~~~~i~~~~~ 158 (1061)
.+.+|..+|.+. .+.+|.+-.+|...+.. +++.|..+|.+|..+|+|.+. .... +=.|.
T Consensus 149 ~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~--sr~tvsR~l~~L~~~g~I~~~-----~~~i--~i~d~ 219 (250)
T 3e6c_C 149 PTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGV--HHVTVSRVLASLKRENILDKK-----KNKI--IVYNL 219 (250)
T ss_dssp HHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTC--CHHHHHHHHHHHHHTTSEEEC-----SSEE--EESCH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCC--cHHHHHHHHHHHHHCCCeEeC-----CCEE--EEecH
Confidence 356666665432 46789999999999976 889999999999999999987 2333 34489
Q ss_pred HhHHhHHHH
Q psy17828 159 VKLLGMVNE 167 (1061)
Q Consensus 159 ~kl~~m~~~ 167 (1061)
++|.++.+.
T Consensus 220 ~~L~~~a~~ 228 (250)
T 3e6c_C 220 GELKHLSEQ 228 (250)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHcc
Confidence 999877665
No 36
>2rh2_A Dihydrofolate reductase type 2; folate metabolism, plasmid-encoded R67 DHFR, TMP-resistant DHFR, antibiotic resistance, methotrexate resistance; 0.96A {Escherichia coli} SCOP: b.34.4.1 PDB: 1vif_A* 1vie_A 2gqv_A 2rk1_A* 2rk2_A* 3sfm_A 2p4t_A*
Probab=59.70 E-value=2.9 Score=35.03 Aligned_cols=11 Identities=45% Similarity=1.177 Sum_probs=9.0
Q ss_pred ccceeeeeccC
Q psy17828 859 REKVVGWYHTG 869 (1061)
Q Consensus 859 kE~IVGWYsTG 869 (1061)
.-+|||||||.
T Consensus 23 qg~ivgwyct~ 33 (62)
T 2rh2_A 23 QGQIVGWYCTN 33 (62)
T ss_dssp EEEEEEEECCS
T ss_pred cceEeEEEEcc
Confidence 46899999974
No 37
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=59.23 E-value=12 Score=36.58 Aligned_cols=67 Identities=15% Similarity=0.221 Sum_probs=50.7
Q ss_pred HHHHHHHHhhcc-----------ccccccchHHHHhhhhhhhhHHHHHHHHHHhhccCcEeeecccCCCCceEEEEeehH
Q psy17828 91 LELELLEKLCDV-----------SLVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINESKDDDNQVEIVSVEHV 159 (1061)
Q Consensus 91 ~e~~ll~~L~d~-----------~l~lP~~s~~l~~~~~~~~~~~~v~~lL~k~a~q~lI~i~~~~~~~~~~~i~~~~~~ 159 (1061)
.+.+|.+.|.+. .+.+|.+-.+|...+.. +++.|..+|.+|..+|+|.+.. .. |+=.|.+
T Consensus 119 ~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~--sr~tvsR~l~~L~~~g~I~~~~-----~~--i~i~d~~ 189 (202)
T 2zcw_A 119 LKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGS--VRETVTKVIGELAREGYIRSGY-----GK--IQLLDLK 189 (202)
T ss_dssp HHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTC--CHHHHHHHHHHHHHTTSEEEET-----TE--EEESCHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCC--CHHHHHHHHHHHHHCCCEEeCC-----CE--EEEeCHH
Confidence 356666665542 47789999999999976 8999999999999999999862 22 4445788
Q ss_pred hHHhHHH
Q psy17828 160 KLLGMVN 166 (1061)
Q Consensus 160 kl~~m~~ 166 (1061)
+|.++.+
T Consensus 190 ~L~~~~~ 196 (202)
T 2zcw_A 190 GLKELAE 196 (202)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 8876653
No 38
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=58.83 E-value=13 Score=36.49 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=51.3
Q ss_pred HHHHHHHHhhc-----cccccccchHHHHhhhhhhhhHHHHHHHHHHhhccCcEeeecccCCCCceEEEEeehHhHHhHH
Q psy17828 91 LELELLEKLCD-----VSLVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINESKDDDNQVEIVSVEHVKLLGMV 165 (1061)
Q Consensus 91 ~e~~ll~~L~d-----~~l~lP~~s~~l~~~~~~~~~~~~v~~lL~k~a~q~lI~i~~~~~~~~~~~i~~~~~~kl~~m~ 165 (1061)
.+.+|..+|.+ ..+.+|.+-.+|...+.. +++.|..+|.+|..+|+|.+.. .. |+=.|.++|.++.
T Consensus 142 ~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~--sr~tvsR~l~~l~~~g~I~~~~-----~~--i~i~d~~~L~~~a 212 (216)
T 4ev0_A 142 ARNRVAYALLKLLRQGLGPLFQIRHHELAALAGT--SRETVSRVLHALAEEGVVRLGP-----GT--VEVREAALLEEIA 212 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTS--CHHHHHHHHHHHHHTTSEEEET-----TE--EEESCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCC--CHHHHHHHHHHHHHCCCEEecC-----CE--EEEeCHHHHHHHh
Confidence 45666666642 356788888899988876 8899999999999999999872 23 4445788888776
Q ss_pred HH
Q psy17828 166 NE 167 (1061)
Q Consensus 166 ~~ 167 (1061)
+.
T Consensus 213 ~~ 214 (216)
T 4ev0_A 213 FG 214 (216)
T ss_dssp TT
T ss_pred hc
Confidence 54
No 39
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=57.40 E-value=7.5 Score=40.66 Aligned_cols=78 Identities=19% Similarity=0.184 Sum_probs=46.7
Q ss_pred CceecccCccCcccCCCccEEEECCCccccc-------cCCC-CCCCh----------HHHhcCCccccCCCcEEEEecC
Q psy17828 338 QWIQCDLRYLDMTVLGKFAVIMADPPWDIHM-------ELPY-GTMSD----------DEMRQLGIPQLQDEGLLFLWVT 399 (1061)
Q Consensus 338 q~i~cDlr~~d~~~lgkFdvIlaDPPW~~~~-------~~~Y-~tms~----------deI~~LPV~~La~~g~LFLWvT 399 (1061)
.|+++|+... ...++||+|+++||+-... ...| +.... ..+..-=...|.++|.+++-..
T Consensus 162 ~~~~~d~~~~--~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~ 239 (276)
T 2b3t_A 162 HILQSDWFSA--LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG 239 (276)
T ss_dssp EEECCSTTGG--GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred EEEEcchhhh--cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 5778887653 1246899999999985321 0111 11111 1111111223456888888776
Q ss_pred ccchHHHHHHhhccceec
Q psy17828 400 GRAMELGRECLKLFMLQD 417 (1061)
Q Consensus 400 ~~~Le~g~elL~~WGf~~ 417 (1061)
....+.-.++|+.-||+.
T Consensus 240 ~~~~~~~~~~l~~~Gf~~ 257 (276)
T 2b3t_A 240 WQQGEAVRQAFILAGYHD 257 (276)
T ss_dssp SSCHHHHHHHHHHTTCTT
T ss_pred chHHHHHHHHHHHCCCcE
Confidence 666677788999999983
No 40
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=55.03 E-value=15 Score=36.45 Aligned_cols=54 Identities=11% Similarity=0.196 Sum_probs=42.6
Q ss_pred ccccccchHHHHhhhhhhhhHHHHHHHHHHhhccCcEeeecccCCCCceEEEEeehHhHHhHH
Q psy17828 103 SLVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINESKDDDNQVEIVSVEHVKLLGMV 165 (1061)
Q Consensus 103 ~l~lP~~s~~l~~~~~~~~~~~~v~~lL~k~a~q~lI~i~~~~~~~~~~~i~~~~~~kl~~m~ 165 (1061)
.+.+|.+-.+|...+.. +++.|..+|.+|..+|+|.+.. . .|+=.|.++|.++.
T Consensus 173 ~i~~~~t~~~lA~~lg~--sr~tvsR~l~~l~~~g~I~~~~-----~--~i~i~d~~~L~~~a 226 (227)
T 3d0s_A 173 RVTHDLTQEEIAQLVGA--SRETVNKALADFAHRGWIRLEG-----K--SVLISDSERLARRA 226 (227)
T ss_dssp EEECCCCHHHHHHHHTS--CHHHHHHHHHHHHHTTSEEEET-----T--EEEESCHHHHHHHH
T ss_pred EEcCCCCHHHHHHHhCC--cHHHHHHHHHHHHHCCCEEecC-----C--EEEEcCHHHHHHhh
Confidence 36788888899988876 8899999999999999999862 2 24445777777653
No 41
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=54.77 E-value=4.9 Score=42.55 Aligned_cols=68 Identities=13% Similarity=-0.049 Sum_probs=44.1
Q ss_pred CceecccCccCcccCCCccEEEECCCccccccCCCCCCChHHHhcCCccccCCCcEEEEecCc-------cchHHHHHHh
Q psy17828 338 QWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVTG-------RAMELGRECL 410 (1061)
Q Consensus 338 q~i~cDlr~~d~~~lgkFdvIlaDPPW~~~~~~~Y~tms~deI~~LPV~~La~~g~LFLWvT~-------~~Le~g~elL 410 (1061)
.|+++|++.+.. .++||+|++|||..... -.+++. ..|.++|.+++-... ..++...+.+
T Consensus 178 ~~~~~D~~~~~~--~~~fD~Vi~~~p~~~~~-------~l~~~~----~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~ 244 (278)
T 2frn_A 178 SAYNMDNRDFPG--ENIADRILMGYVVRTHE-------FIPKAL----SIAKDGAIIHYHNTVPEKLMPREPFETFKRIT 244 (278)
T ss_dssp EEECSCTTTCCC--CSCEEEEEECCCSSGGG-------GHHHHH----HHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHH
T ss_pred EEEECCHHHhcc--cCCccEEEECCchhHHH-------HHHHHH----HHCCCCeEEEEEEeeccccccccHHHHHHHHH
Confidence 488999988765 56899999999954310 111221 234567777664332 3456667888
Q ss_pred hccceecc
Q psy17828 411 KLFMLQDE 418 (1061)
Q Consensus 411 ~~WGf~~e 418 (1061)
+.-||+..
T Consensus 245 ~~~G~~~~ 252 (278)
T 2frn_A 245 KEYGYDVE 252 (278)
T ss_dssp HHTTCEEE
T ss_pred HHcCCeeE
Confidence 88898844
No 42
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=54.11 E-value=11 Score=41.77 Aligned_cols=36 Identities=6% Similarity=0.093 Sum_probs=28.7
Q ss_pred cccchHHHHhhhhhhhhHHHHHHHHHHhhccCcEeeec
Q psy17828 106 LPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINE 143 (1061)
Q Consensus 106 lP~~s~~l~~~~~~~~~~~~v~~lL~k~a~q~lI~i~~ 143 (1061)
-|.+..+|...... ....+.-+|..|++.|+++..+
T Consensus 54 ~~~t~~eLa~~~g~--~~~~v~~~L~~l~~~gll~~~~ 89 (373)
T 2qm3_A 54 ASDDIWRIVDLSEE--PLPLVVAILESLNELGYVTFED 89 (373)
T ss_dssp HCSCHHHHHHHHTS--CHHHHHHHHHHHHHTTSEECSS
T ss_pred CCCCHHHHHHHhCC--ChHHHHHHHHHHhhCCcEEECC
Confidence 47888899776544 6678899999999999998753
No 43
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=52.82 E-value=20 Score=35.17 Aligned_cols=54 Identities=17% Similarity=0.308 Sum_probs=41.7
Q ss_pred cccccchHHHHhhhhhhhhHHHHHHHHHHhhccCcEeeecccCCCCceEEEEeehHhHHhHHH
Q psy17828 104 LVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINESKDDDNQVEIVSVEHVKLLGMVN 166 (1061)
Q Consensus 104 l~lP~~s~~l~~~~~~~~~~~~v~~lL~k~a~q~lI~i~~~~~~~~~~~i~~~~~~kl~~m~~ 166 (1061)
+.+|.+-.+|...+.. +++.|..+|.+|..+|+|.+.. . .|+=.|.++|.++.+
T Consensus 166 ~~~~~t~~~lA~~lg~--sr~tvsR~l~~L~~~g~I~~~~-----~--~i~i~d~~~L~~~a~ 219 (220)
T 3dv8_A 166 NELKITHETIANHLGS--HREVITRMLRYFQVEGLVKLSR-----G--KITILDSKRLETLQR 219 (220)
T ss_dssp SEECCCHHHHHHHHTC--CHHHHHHHHHHHHHTTSEEEET-----T--EEEESCHHHHHHHHH
T ss_pred ceecCCHHHHHHHhCC--CHHHHHHHHHHHHHCCCEEeCC-----C--EEEEeCHHHHHHHhc
Confidence 4567788888888866 8899999999999999999872 2 244457888877654
No 44
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=52.37 E-value=17 Score=35.36 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=33.7
Q ss_pred cccccchHHHHhhhhhhhhHHHHHHHHHHhhccCcEeeec
Q psy17828 104 LVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINE 143 (1061)
Q Consensus 104 l~lP~~s~~l~~~~~~~~~~~~v~~lL~k~a~q~lI~i~~ 143 (1061)
+.+|.+-.+|...+.. +++.|..+|.+|..+|+|.+..
T Consensus 164 ~~~~~t~~~iA~~lg~--sr~tvsR~l~~L~~~g~I~~~~ 201 (210)
T 3ryp_A 164 MQIKITRQEIGQIVGC--SRETVGRILKMLEDQNLISAHG 201 (210)
T ss_dssp EEEECCHHHHHHHHTC--CHHHHHHHHHHHHHTTSEEEET
T ss_pred eEeccCHHHHHHHhCC--cHHHHHHHHHHHHHCCcEEeCC
Confidence 5578888899998876 8999999999999999999873
No 45
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=49.16 E-value=5.3 Score=43.66 Aligned_cols=64 Identities=14% Similarity=0.192 Sum_probs=40.0
Q ss_pred CceecccCccCcccCCCccEEEECCCccccccCCCCCCChHHHhcCCccccCCCcEEEEecCccchHHHHHHhhcc-cee
Q psy17828 338 QWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVTGRAMELGRECLKLF-MLQ 416 (1061)
Q Consensus 338 q~i~cDlr~~d~~~lgkFdvIlaDPPW~~~~~~~Y~tms~deI~~LPV~~La~~g~LFLWvT~~~Le~g~elL~~W-Gf~ 416 (1061)
++++.|++.+. ++||+|++|||.... ++...=...|.++|.+++.......+...+.++.- ||+
T Consensus 246 ~~~~~D~~~~~----~~fD~Vi~dpP~~~~-----------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~l~~~~~~~ 310 (336)
T 2yx1_A 246 IPILSDVREVD----VKGNRVIMNLPKFAH-----------KFIDKALDIVEEGGVIHYYTIGKDFDKAIKLFEKKCDCE 310 (336)
T ss_dssp EEEESCGGGCC----CCEEEEEECCTTTGG-----------GGHHHHHHHEEEEEEEEEEEEESSSHHHHHHHHHHSEEE
T ss_pred EEEECChHHhc----CCCcEEEECCcHhHH-----------HHHHHHHHHcCCCCEEEEEEeecCchHHHHHHHHhcCCc
Confidence 58899988764 899999999996421 11111122345678766543333366666666665 776
No 46
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=48.63 E-value=12 Score=36.77 Aligned_cols=68 Identities=16% Similarity=0.005 Sum_probs=44.8
Q ss_pred CCceecccCccCcccCCCccEEEECCCccccccCCCCCCChHHHhcCCccccCCCcEEEEec-CccchHHHHHHhhccce
Q psy17828 337 PQWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWV-TGRAMELGRECLKLFML 415 (1061)
Q Consensus 337 pq~i~cDlr~~d~~~lgkFdvIlaDPPW~~~~~~~Y~tms~deI~~LPV~~La~~g~LFLWv-T~~~Le~g~elL~~WGf 415 (1061)
-.++++|+..+. .++||+|++++|.+. ..++.+-=...|.++|.+++-. .....+.-.++++..||
T Consensus 111 v~~~~~d~~~~~---~~~fD~i~~~~~~~~----------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf 177 (205)
T 3grz_A 111 IALQKTSLLADV---DGKFDLIVANILAEI----------LLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSF 177 (205)
T ss_dssp CEEEESSTTTTC---CSCEEEEEEESCHHH----------HHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTE
T ss_pred eEEEeccccccC---CCCceEEEECCcHHH----------HHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCC
Confidence 467888886532 379999999998752 1222222223445688887742 23456777899999999
Q ss_pred ec
Q psy17828 416 QD 417 (1061)
Q Consensus 416 ~~ 417 (1061)
+.
T Consensus 178 ~~ 179 (205)
T 3grz_A 178 QI 179 (205)
T ss_dssp EE
T ss_pred ce
Confidence 93
No 47
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=47.82 E-value=22 Score=35.14 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=34.0
Q ss_pred cccccchHHHHhhhhhhhhHHHHHHHHHHhhccCcEeeec
Q psy17828 104 LVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINE 143 (1061)
Q Consensus 104 l~lP~~s~~l~~~~~~~~~~~~v~~lL~k~a~q~lI~i~~ 143 (1061)
+.+|.+-.+|...+.. +++.|..+|.+|..+|+|.+..
T Consensus 184 ~~~~lt~~~lA~~lg~--sr~tvsR~l~~L~~~g~I~~~~ 221 (230)
T 3iwz_A 184 TQLRVSRQELARLVGC--SREMAGRVLKKLQADGLLHARG 221 (230)
T ss_dssp EEEECCHHHHHHHHTC--CHHHHHHHHHHHHHTTSEEEET
T ss_pred eecCCCHHHHHHHhCC--cHHHHHHHHHHHHHCCCEEECC
Confidence 5788888999998876 8999999999999999999874
No 48
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=45.89 E-value=3 Score=50.54 Aligned_cols=80 Identities=16% Similarity=0.118 Sum_probs=45.7
Q ss_pred CceecccCccCcccCCCccEEEECCCccccccCCCCCCC----hHHHhcCCccccCCCcEEEEecCccchHHHHHHhhcc
Q psy17828 338 QWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMS----DDEMRQLGIPQLQDEGLLFLWVTGRAMELGRECLKLF 413 (1061)
Q Consensus 338 q~i~cDlr~~d~~~lgkFdvIlaDPPW~~~~~~~Y~tms----~deI~~LPV~~La~~g~LFLWvT~~~Le~g~elL~~W 413 (1061)
+|++.|+..+--...++||+|++|||.-......-..+. ..+|...-...|.++|++++=+..+......+.|+..
T Consensus 593 ~~i~~D~~~~l~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~~~ 672 (703)
T 3v97_A 593 RLIQADCLAWLREANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKL 672 (703)
T ss_dssp EEEESCHHHHHHHCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHHHHT
T ss_pred EEEecCHHHHHHhcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccCHHHHHHc
Confidence 589999876321223689999999997432211111111 1122222233456788888655554555567888889
Q ss_pred ceec
Q psy17828 414 MLQD 417 (1061)
Q Consensus 414 Gf~~ 417 (1061)
||+.
T Consensus 673 g~~~ 676 (703)
T 3v97_A 673 GLKA 676 (703)
T ss_dssp TEEE
T ss_pred CCce
Confidence 9983
No 49
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=45.37 E-value=10 Score=39.60 Aligned_cols=66 Identities=9% Similarity=0.046 Sum_probs=42.8
Q ss_pred CceecccCccCcccCCCccEEEECCCccccccCCCCCCChHHHhcCCccccCCCcEEEEecCcc-chHHHHHHhhcccee
Q psy17828 338 QWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVTGR-AMELGRECLKLFMLQ 416 (1061)
Q Consensus 338 q~i~cDlr~~d~~~lgkFdvIlaDPPW~~~~~~~Y~tms~deI~~LPV~~La~~g~LFLWvT~~-~Le~g~elL~~WGf~ 416 (1061)
.++++|+.. +-..++||+|++|+|=. .--.+++. ..|.++|.+++.+.+. ..+...+.|+..||+
T Consensus 165 ~~~~~d~~~--~~~~~~fD~Vi~~~~~~--------~~~l~~~~----~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~ 230 (275)
T 1yb2_A 165 RTSRSDIAD--FISDQMYDAVIADIPDP--------WNHVQKIA----SMMKPGSVATFYLPNFDQSEKTVLSLSASGMH 230 (275)
T ss_dssp EEECSCTTT--CCCSCCEEEEEECCSCG--------GGSHHHHH----HTEEEEEEEEEEESSHHHHHHHHHHSGGGTEE
T ss_pred EEEECchhc--cCcCCCccEEEEcCcCH--------HHHHHHHH----HHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCe
Confidence 577788776 22236899999997611 01122222 2345689888887755 556667889999998
Q ss_pred c
Q psy17828 417 D 417 (1061)
Q Consensus 417 ~ 417 (1061)
.
T Consensus 231 ~ 231 (275)
T 1yb2_A 231 H 231 (275)
T ss_dssp E
T ss_pred E
Confidence 3
No 50
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=45.12 E-value=11 Score=38.33 Aligned_cols=66 Identities=6% Similarity=-0.007 Sum_probs=42.7
Q ss_pred CceecccCccCcccCCCccEEEECCCccccccCCCCCCChHHHhcCCccccCCCcEEEEecCcc-chHHHHHHhhcccee
Q psy17828 338 QWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVTGR-AMELGRECLKLFMLQ 416 (1061)
Q Consensus 338 q~i~cDlr~~d~~~lgkFdvIlaDPPW~~~~~~~Y~tms~deI~~LPV~~La~~g~LFLWvT~~-~Le~g~elL~~WGf~ 416 (1061)
.+++.|+..+++. .++||+|++|||=.. --.+++. ..|.++|.+++.+... .+....+.|+..||.
T Consensus 151 ~~~~~d~~~~~~~-~~~~D~v~~~~~~~~--------~~l~~~~----~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~ 217 (258)
T 2pwy_A 151 RFHLGKLEEAELE-EAAYDGVALDLMEPW--------KVLEKAA----LALKPDRFLVAYLPNITQVLELVRAAEAHPFR 217 (258)
T ss_dssp EEEESCGGGCCCC-TTCEEEEEEESSCGG--------GGHHHHH----HHEEEEEEEEEEESCHHHHHHHHHHHTTTTEE
T ss_pred EEEECchhhcCCC-CCCcCEEEECCcCHH--------HHHHHHH----HhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence 4778888765432 268999999976110 0112222 2345688888877654 666777888999998
No 51
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=44.61 E-value=19 Score=36.21 Aligned_cols=53 Identities=17% Similarity=0.290 Sum_probs=43.3
Q ss_pred hhHHHHHHHHhhcc------ccccccchHHHHhhhhhhhhHHHHHHHHHHhhccCcEeeec
Q psy17828 89 PDLELELLEKLCDV------SLVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINE 143 (1061)
Q Consensus 89 ~~~e~~ll~~L~d~------~l~lP~~s~~l~~~~~~~~~~~~v~~lL~k~a~q~lI~i~~ 143 (1061)
..++.+|..+|.+. .+.+|.+-.+|...+.. +++.|..+|.+|..+|+|.+..
T Consensus 162 ~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~--sr~tvsR~l~~l~~~glI~~~~ 220 (232)
T 1zyb_A 162 LDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDD--TRLNISKTLNELQDNGLIELHR 220 (232)
T ss_dssp CSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTS--CHHHHHHHHHHHHHTTSCEEET
T ss_pred cCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCC--ChhHHHHHHHHHHHCCCEEecC
Confidence 34567777776654 47788999999999876 8899999999999999999873
No 52
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=43.91 E-value=20 Score=35.51 Aligned_cols=69 Identities=10% Similarity=0.135 Sum_probs=50.7
Q ss_pred hHHHHHHHHhhcc------------ccccccchHHHHhhhhhhhhHHHHHHHHHHhhccCcEeeecccCCCCceEEEE-e
Q psy17828 90 DLELELLEKLCDV------------SLVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINESKDDDNQVEIVS-V 156 (1061)
Q Consensus 90 ~~e~~ll~~L~d~------------~l~lP~~s~~l~~~~~~~~~~~~v~~lL~k~a~q~lI~i~~~~~~~~~~~i~~-~ 156 (1061)
..+.+|...|.+. .+.+|.+-.+|...+.. +++.|..+|.+|..+|+|.+... . |+- .
T Consensus 134 ~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~--sr~tvsR~l~~L~~~g~I~~~~~-----~--i~~i~ 204 (222)
T 1ft9_A 134 DIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGS--SRQTTSTALNSLIKEGYISRQGR-----G--HYTIP 204 (222)
T ss_dssp HHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCS--CHHHHHHHHHHHHHTTSSEECST-----T--CEECS
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCC--cHHHHHHHHHHHHHCCcEEEcCC-----c--eEEEc
Confidence 3466777666554 37788999999999976 89999999999999999998632 2 222 3
Q ss_pred ehHhHHhHHHH
Q psy17828 157 EHVKLLGMVNE 167 (1061)
Q Consensus 157 ~~~kl~~m~~~ 167 (1061)
|.++|.++.+.
T Consensus 205 d~~~L~~~~~~ 215 (222)
T 1ft9_A 205 NLVRLKAAADG 215 (222)
T ss_dssp SHHHHHHTC--
T ss_pred CHHHHHHHHhc
Confidence 78888766543
No 53
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=43.58 E-value=20 Score=30.89 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHhhccCcEeee
Q psy17828 120 EYTHLCLINLLHKFATQKLITIN 142 (1061)
Q Consensus 120 ~~~~~~v~~lL~k~a~q~lI~i~ 142 (1061)
-|+.++|-.+|.+|++.|||.|.
T Consensus 36 gV~kdeV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 36 GVEKQEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHHCCCeecc
Confidence 56789999999999999999985
No 54
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=43.27 E-value=29 Score=34.96 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=44.2
Q ss_pred cccc-ccchHHHHhhhhhhhhH-HHHHHHHHHhhccCcEeeecccCCCCceEEEEeehHhHHhHHH
Q psy17828 103 SLVL-PITSQSLMGTLNQEYTH-LCLINLLHKFATQKLITINESKDDDNQVEIVSVEHVKLLGMVN 166 (1061)
Q Consensus 103 ~l~l-P~~s~~l~~~~~~~~~~-~~v~~lL~k~a~q~lI~i~~~~~~~~~~~i~~~~~~kl~~m~~ 166 (1061)
.+.+ |.+-.+|...+.. ++ +.|..+|.+|..+|+|.+.. .. |+=.|.++|.++.+
T Consensus 164 ~i~~~~~t~~~lA~~lG~--sr~etvsR~l~~l~~~glI~~~~-----~~--i~I~d~~~L~~~~~ 220 (238)
T 2bgc_A 164 KITLDNLTMQELGYSSGI--AHSSAVSRIISKLKQEKVIVYKN-----SC--FYVQNLDYLKRYAP 220 (238)
T ss_dssp EECCSCCCHHHHHHHTTC--CCHHHHHHHHHHHHHTTSEEEET-----TE--EEESCHHHHHHHCH
T ss_pred EEEeccCCHHHHHHHhCC--ChHHHHHHHHHHHHHCCCEEecC-----CE--EEEeCHHHHHHHhc
Confidence 4678 8999999999976 88 79999999999999999872 22 44458888887765
No 55
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=42.09 E-value=25 Score=30.97 Aligned_cols=55 Identities=18% Similarity=0.195 Sum_probs=44.8
Q ss_pred cCChhHHHHHHHHhhccccccccchHHHHhhhhhhhhHHHHHHHHHHhhccCcEeee
Q psy17828 86 KLNPDLELELLEKLCDVSLVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITIN 142 (1061)
Q Consensus 86 ~~d~~~e~~ll~~L~d~~l~lP~~s~~l~~~~~~~~~~~~v~~lL~k~a~q~lI~i~ 142 (1061)
...++.|.++|.+|.+..-.=+++..+|...+.- +...|...|.+|...|+|.-.
T Consensus 10 ~~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv--s~~tV~~~L~~L~~~G~I~~~ 64 (77)
T 1qgp_A 10 SIYQDQEQRILKFLEELGEGKATTAHDLSGKLGT--PKKEINRVLYSLAKKGKLQKE 64 (77)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCC--CHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCc--CHHHHHHHHHHHHHCCCEEec
Confidence 3456778999999988544446888999999974 778899999999999999765
No 56
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=41.91 E-value=22 Score=35.04 Aligned_cols=52 Identities=13% Similarity=0.352 Sum_probs=41.0
Q ss_pred hHHHHHHHHhhcc---------ccccccchHHHHhhhhhhhhHHHHHHHHHHhhccCcEeeec
Q psy17828 90 DLELELLEKLCDV---------SLVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINE 143 (1061)
Q Consensus 90 ~~e~~ll~~L~d~---------~l~lP~~s~~l~~~~~~~~~~~~v~~lL~k~a~q~lI~i~~ 143 (1061)
..+.+|..+|.+. .+.+|.+-.+|...+.. +++.|..+|.+|..+|+|.+..
T Consensus 152 ~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~--sr~tvsR~l~~l~~~g~I~~~~ 212 (227)
T 3dkw_A 152 NATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSI--QPETFSRIMHRLGDEGIIHLDG 212 (227)
T ss_dssp HHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTS--CHHHHHHHHHHHHHHTSEEESS
T ss_pred CHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCC--CHHHHHHHHHHHHHCCcEEecC
Confidence 3456666655332 27788899999999876 8899999999999999999873
No 57
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=41.39 E-value=23 Score=35.84 Aligned_cols=38 Identities=21% Similarity=0.444 Sum_probs=33.9
Q ss_pred ccccccchHHHHhhhhhhhhHHHHHHHHHHhhccCcEeee
Q psy17828 103 SLVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITIN 142 (1061)
Q Consensus 103 ~l~lP~~s~~l~~~~~~~~~~~~v~~lL~k~a~q~lI~i~ 142 (1061)
.+.+|.+-.+|...+.. +++.|..+|.+|..+|+|.++
T Consensus 189 ~i~~~lt~~~lA~~lG~--sr~tvsR~l~~L~~~GlI~~~ 226 (243)
T 3la7_A 189 TIDLKLSHQAIAEAIGS--TRVTVTRLLGDLREKKMISIH 226 (243)
T ss_dssp EECSCCCHHHHHHHHTC--CHHHHHHHHHHHHHTTSEEEE
T ss_pred EEeccCCHHHHHHHHCC--cHHHHHHHHHHHHHCCCEEEc
Confidence 46788888999988876 899999999999999999987
No 58
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=37.33 E-value=31 Score=35.51 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=33.4
Q ss_pred cccccchHHHHhhhhhhhhHHHHHHHHHHhhccCcEeeec
Q psy17828 104 LVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINE 143 (1061)
Q Consensus 104 l~lP~~s~~l~~~~~~~~~~~~v~~lL~k~a~q~lI~i~~ 143 (1061)
+.+|.+-.+|...+.. +++.|..+|.+|..+|+|.+..
T Consensus 214 ~~l~lt~~~lA~~lG~--sr~tvsR~l~~L~~~GlI~~~~ 251 (260)
T 3kcc_A 214 MQIKITRQEIGQIVGC--SRETVGRILKMLEDQNLISAHG 251 (260)
T ss_dssp EEEECCHHHHHHHHTC--CHHHHHHHHHHHHHTTSEEECS
T ss_pred eeecCCHHHHHHHhCC--CHHHHHHHHHHHHHCCCEEEcC
Confidence 5578888889988876 8899999999999999999873
No 59
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=37.07 E-value=13 Score=39.28 Aligned_cols=66 Identities=11% Similarity=-0.056 Sum_probs=39.2
Q ss_pred CceecccCccCcccCCCccEEEECCCccccccCCCCCCChHHHhcCCccccCCCcEEEEecCcc------chHHHHHHhh
Q psy17828 338 QWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVTGR------AMELGRECLK 411 (1061)
Q Consensus 338 q~i~cDlr~~d~~~lgkFdvIlaDPPW~~~~~~~Y~tms~deI~~LPV~~La~~g~LFLWvT~~------~Le~g~elL~ 411 (1061)
.|++.|++.+. . .++||+|++|||... .++...=+..|.++|++++-+... .+....+.++
T Consensus 172 ~~~~~d~~~~~-~-~~~~D~Vi~d~p~~~-----------~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~ 238 (272)
T 3a27_A 172 IPILADNRDVE-L-KDVADRVIMGYVHKT-----------HKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYA 238 (272)
T ss_dssp EEEESCGGGCC-C-TTCEEEEEECCCSSG-----------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHH
T ss_pred EEEECChHHcC-c-cCCceEEEECCcccH-----------HHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHH
Confidence 48899998872 2 568999999999621 112111123345788888766633 3334444444
Q ss_pred c-ccee
Q psy17828 412 L-FMLQ 416 (1061)
Q Consensus 412 ~-WGf~ 416 (1061)
. -|++
T Consensus 239 ~~~~~~ 244 (272)
T 3a27_A 239 EKNGYK 244 (272)
T ss_dssp HHTTEE
T ss_pred HHhCCe
Confidence 3 3555
No 60
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=36.19 E-value=16 Score=38.06 Aligned_cols=66 Identities=11% Similarity=-0.046 Sum_probs=42.3
Q ss_pred CceecccCccCcccCCCccEEEECCCccccccCCCCCCChHHHhcCCccccCCCcEEEEecCc-cchHHHHHHhhcccee
Q psy17828 338 QWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVTG-RAMELGRECLKLFMLQ 416 (1061)
Q Consensus 338 q~i~cDlr~~d~~~lgkFdvIlaDPPW~~~~~~~Y~tms~deI~~LPV~~La~~g~LFLWvT~-~~Le~g~elL~~WGf~ 416 (1061)
.+++.|+..+ + ..++||+|++|||-.. --.+++. ..|.++|.+++.+.. ..++...+.|++.||.
T Consensus 167 ~~~~~d~~~~-~-~~~~~D~V~~~~~~~~--------~~l~~~~----~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~ 232 (277)
T 1o54_A 167 TIKVRDISEG-F-DEKDVDALFLDVPDPW--------NYIDKCW----EALKGGGRFATVCPTTNQVQETLKKLQELPFI 232 (277)
T ss_dssp EEECCCGGGC-C-SCCSEEEEEECCSCGG--------GTHHHHH----HHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred EEEECCHHHc-c-cCCccCEEEECCcCHH--------HHHHHHH----HHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence 4677777654 2 2258999999987321 1122222 235668888877763 3566777888889998
Q ss_pred c
Q psy17828 417 D 417 (1061)
Q Consensus 417 ~ 417 (1061)
.
T Consensus 233 ~ 233 (277)
T 1o54_A 233 R 233 (277)
T ss_dssp E
T ss_pred e
Confidence 3
No 61
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=35.89 E-value=30 Score=33.58 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=33.8
Q ss_pred cccccchHHHHhhhhhhhhHHHHHHHHHHhhccCcEeeec
Q psy17828 104 LVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINE 143 (1061)
Q Consensus 104 l~lP~~s~~l~~~~~~~~~~~~v~~lL~k~a~q~lI~i~~ 143 (1061)
+.+|.+-.+|...+.. +++.|..+|.+|..+|+|.+..
T Consensus 161 ~~~~~t~~~lA~~lg~--sr~tvsR~l~~l~~~g~I~~~~ 198 (207)
T 2oz6_A 161 MQIKITRQEIGRIVGC--SREMVGRVLKSLEEQGLVHVKG 198 (207)
T ss_dssp EEEECCHHHHHHHHTS--CHHHHHHHHHHHHHTTSEEEET
T ss_pred eecccCHHHHHHHhCC--CHHHHHHHHHHHHHCCCEEecC
Confidence 6788888899998876 8899999999999999999873
No 62
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=35.14 E-value=16 Score=34.58 Aligned_cols=66 Identities=5% Similarity=-0.182 Sum_probs=42.2
Q ss_pred CceecccCccCcccCCCccEEEECCCccccccCCCCCCChHHHhcCCccccCCCcEEEEec-CccchHHHHHHhhcccee
Q psy17828 338 QWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWV-TGRAMELGRECLKLFMLQ 416 (1061)
Q Consensus 338 q~i~cDlr~~d~~~lgkFdvIlaDPPW~~~~~~~Y~tms~deI~~LPV~~La~~g~LFLWv-T~~~Le~g~elL~~WGf~ 416 (1061)
+++++|+.. .+.. ++||+|+++++ .. +. --..++.++ ++|.+++-. ....+....+.|+..||+
T Consensus 86 ~~~~~d~~~-~~~~-~~~D~i~~~~~-~~-----~~-~~l~~~~~~------~gG~l~~~~~~~~~~~~~~~~l~~~g~~ 150 (183)
T 2yxd_A 86 QIIKGRAED-VLDK-LEFNKAFIGGT-KN-----IE-KIIEILDKK------KINHIVANTIVLENAAKIINEFESRGYN 150 (183)
T ss_dssp EEEESCHHH-HGGG-CCCSEEEECSC-SC-----HH-HHHHHHHHT------TCCEEEEEESCHHHHHHHHHHHHHTTCE
T ss_pred EEEECCccc-cccC-CCCcEEEECCc-cc-----HH-HHHHHHhhC------CCCEEEEEecccccHHHHHHHHHHcCCe
Confidence 578888776 2222 68999999988 11 00 012333333 777666544 455677788999999988
Q ss_pred cc
Q psy17828 417 DE 418 (1061)
Q Consensus 417 ~e 418 (1061)
.+
T Consensus 151 ~~ 152 (183)
T 2yxd_A 151 VD 152 (183)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 63
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=33.85 E-value=39 Score=30.34 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=41.8
Q ss_pred ChhHHHHHHHHhhccccccccchHHHHhhhhhhhhHH-HHHHHHHHhhccCcEeee
Q psy17828 88 NPDLELELLEKLCDVSLVLPITSQSLMGTLNQEYTHL-CLINLLHKFATQKLITIN 142 (1061)
Q Consensus 88 d~~~e~~ll~~L~d~~l~lP~~s~~l~~~~~~~~~~~-~v~~lL~k~a~q~lI~i~ 142 (1061)
+++...++|.+|...- |.+..+|...+.- +.. .|...|.+|..+|+|+-.
T Consensus 9 ~~~~~~~IL~~Lk~~g---~~ta~eiA~~Lgi--t~~~aVr~hL~~Le~eGlV~~~ 59 (79)
T 1xmk_A 9 MAEIKEKICDYLFNVS---DSSALNLAKNIGL--TKARDINAVLIDMERQGDVYRQ 59 (79)
T ss_dssp HHHHHHHHHHHHHHTC---CEEHHHHHHHHCG--GGHHHHHHHHHHHHHTTSEEEE
T ss_pred chhHHHHHHHHHHHcC---CcCHHHHHHHcCC--CcHHHHHHHHHHHHHCCCEEec
Confidence 3567888999988754 8889999999865 777 999999999999999833
No 64
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=33.84 E-value=37 Score=30.40 Aligned_cols=55 Identities=18% Similarity=0.183 Sum_probs=44.2
Q ss_pred CChhHHHHHHHHhhccccccccchHHHHhhhhhhhhHHHHHHHHHHhhccCcEeeec
Q psy17828 87 LNPDLELELLEKLCDVSLVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINE 143 (1061)
Q Consensus 87 ~d~~~e~~ll~~L~d~~l~lP~~s~~l~~~~~~~~~~~~v~~lL~k~a~q~lI~i~~ 143 (1061)
...+.|+++|.+|.+...-=+++..+|...+. ++...|..-|.+|...|+|....
T Consensus 7 ~~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lg--vsr~tV~~~L~~Le~~G~I~~~g 61 (81)
T 1qbj_A 7 IYQDQEQRILKFLEELGEGKATTAHDLSGKLG--TPKKEINRVLYSLAKKGKLQKEA 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEES
T ss_pred cchHHHHHHHHHHHHcCCCCCcCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEecC
Confidence 34567899999998744334588899999987 47789999999999999998763
No 65
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=32.18 E-value=33 Score=38.99 Aligned_cols=62 Identities=11% Similarity=0.250 Sum_probs=37.7
Q ss_pred CCceecccCccCcccCCCccEEEECCCccccccCCCCCCChHHHhcCCccccCCCcEEEEecCccchHHHHHHhh
Q psy17828 337 PQWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVTGRAMELGRECLK 411 (1061)
Q Consensus 337 pq~i~cDlr~~d~~~lgkFdvIlaDPPW~~~~~~~Y~tms~deI~~LPV~~La~~g~LFLWvT~~~Le~g~elL~ 411 (1061)
-.|++.|+..+... +||+|++|||.. -+...-+..+ ..|.++|++++=|....+.+-...|.
T Consensus 339 v~~~~~d~~~~~~~---~fD~Vv~dPPr~--------g~~~~~~~~l--~~l~p~givyvsc~p~tlarDl~~l~ 400 (425)
T 2jjq_A 339 AEFEVASDREVSVK---GFDTVIVDPPRA--------GLHPRLVKRL--NREKPGVIVYVSCNPETFARDVKMLD 400 (425)
T ss_dssp EEEEECCTTTCCCT---TCSEEEECCCTT--------CSCHHHHHHH--HHHCCSEEEEEESCHHHHHHHHHHSS
T ss_pred EEEEECChHHcCcc---CCCEEEEcCCcc--------chHHHHHHHH--HhcCCCcEEEEECChHHHHhHHhhCe
Confidence 46888888875332 899999999953 1112122222 23678999998775444443334444
No 66
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=31.30 E-value=50 Score=27.99 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=38.8
Q ss_pred HHHHHHHHhhccccccccchHHHHhhhhhhhhHHHHHHHHHHhhccCcEee
Q psy17828 91 LELELLEKLCDVSLVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITI 141 (1061)
Q Consensus 91 ~e~~ll~~L~d~~l~lP~~s~~l~~~~~~~~~~~~v~~lL~k~a~q~lI~i 141 (1061)
.+.++|++|.+- .=|.+..+|...+.- ++..|..+|++|.++|+|.-
T Consensus 11 ~~~~IL~~L~~~--~~~~s~~eLA~~lgl--sr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 11 LEQKILQVLSDD--GGPVAIFQLVKKCQV--PKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHHHHHHHHHHH--CSCEEHHHHHHHHCS--CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHc--CCCcCHHHHHHHHCc--CHHHHHHHHHHHHHCCcEec
Confidence 577899999762 246888999988854 88999999999999999753
No 67
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=30.74 E-value=16 Score=39.01 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=20.2
Q ss_pred CceecccCccCcccCCCccEEEECCCccc
Q psy17828 338 QWIQCDLRYLDMTVLGKFAVIMADPPWDI 366 (1061)
Q Consensus 338 q~i~cDlr~~d~~~lgkFdvIlaDPPW~~ 366 (1061)
++++.|...+--...++||+|++|||+..
T Consensus 148 ~~~~~D~~~~L~~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 148 QLIHASSLTALTDITPRPQVVYLDPMFPH 176 (258)
T ss_dssp EEEESCHHHHSTTCSSCCSEEEECCCCCC
T ss_pred EEEECCHHHHHHhCcccCCEEEEcCCCCC
Confidence 57888876642222247999999999953
No 68
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=30.60 E-value=23 Score=38.87 Aligned_cols=39 Identities=21% Similarity=0.379 Sum_probs=24.4
Q ss_pred CccEEEECCCccccccCCCCCCChHHHh-cCC-ccccCCCcEEEEecC
Q psy17828 354 KFAVIMADPPWDIHMELPYGTMSDDEMR-QLG-IPQLQDEGLLFLWVT 399 (1061)
Q Consensus 354 kFdvIlaDPPW~~~~~~~Y~tms~deI~-~LP-V~~La~~g~LFLWvT 399 (1061)
+||+|++|||++... ..+++. .|- ...+.+.|++.+|..
T Consensus 159 ~fdLVfiDPPYe~k~-------~~~~vl~~L~~~~~r~~~Gi~v~WYP 199 (283)
T 2oo3_A 159 KRGLIFIDPSYERKE-------EYKEIPYAIKNAYSKFSTGLYCVWYP 199 (283)
T ss_dssp SCEEEEECCCCCSTT-------HHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred CccEEEECCCCCCCc-------HHHHHHHHHHHhCccCCCeEEEEEEe
Confidence 699999999997421 011221 111 112356999999997
No 69
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=30.49 E-value=13 Score=41.44 Aligned_cols=81 Identities=21% Similarity=0.240 Sum_probs=42.4
Q ss_pred CceecccCccCccc---CCCccEEEECCCccccccCCC-CC-CChHHHhcCCccccCCCcEEEEecCccchH------HH
Q psy17828 338 QWIQCDLRYLDMTV---LGKFAVIMADPPWDIHMELPY-GT-MSDDEMRQLGIPQLQDEGLLFLWVTGRAME------LG 406 (1061)
Q Consensus 338 q~i~cDlr~~d~~~---lgkFdvIlaDPPW~~~~~~~Y-~t-ms~deI~~LPV~~La~~g~LFLWvT~~~Le------~g 406 (1061)
.|++.|+..+-... .++||+|++|||......... .. -...++...-+..|.++|++++-+....+. .-
T Consensus 274 ~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i 353 (396)
T 3c0k_A 274 EFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKII 353 (396)
T ss_dssp EEEESCHHHHHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHH
T ss_pred EEEECCHHHHHHHHHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHH
Confidence 57888887652211 258999999999743221110 01 111222222233456788887755433322 22
Q ss_pred HHHhhccceecc
Q psy17828 407 RECLKLFMLQDE 418 (1061)
Q Consensus 407 ~elL~~WGf~~e 418 (1061)
.+.+...|++.+
T Consensus 354 ~~~~~~~g~~~~ 365 (396)
T 3c0k_A 354 ADAAIDAGRDVQ 365 (396)
T ss_dssp HHHHHHHTCCEE
T ss_pred HHHHHHcCCeEE
Confidence 346666776543
No 70
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=30.35 E-value=12 Score=36.52 Aligned_cols=29 Identities=14% Similarity=0.327 Sum_probs=22.2
Q ss_pred CceecccCccCccc-CCCccEEEECCCccc
Q psy17828 338 QWIQCDLRYLDMTV-LGKFAVIMADPPWDI 366 (1061)
Q Consensus 338 q~i~cDlr~~d~~~-lgkFdvIlaDPPW~~ 366 (1061)
+++++|+..+.... .++||+|++|||+..
T Consensus 96 ~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~ 125 (189)
T 3p9n_A 96 TLRRGAVAAVVAAGTTSPVDLVLADPPYNV 125 (189)
T ss_dssp EEEESCHHHHHHHCCSSCCSEEEECCCTTS
T ss_pred EEEEccHHHHHhhccCCCccEEEECCCCCc
Confidence 58889988764322 469999999999753
No 71
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=29.92 E-value=11 Score=40.59 Aligned_cols=76 Identities=8% Similarity=-0.074 Sum_probs=44.3
Q ss_pred CceecccCccCcc-cCCCccEEEECCCccccccCCCCCCChHHHhcCCccccCCCcEEEEecCcc-----chHHHHHHhh
Q psy17828 338 QWIQCDLRYLDMT-VLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVTGR-----AMELGRECLK 411 (1061)
Q Consensus 338 q~i~cDlr~~d~~-~lgkFdvIlaDPPW~~~~~~~Y~tms~deI~~LPV~~La~~g~LFLWvT~~-----~Le~g~elL~ 411 (1061)
.++..|.+.+... ..++||+|++|++-.... .....+ .++.+.=-..|.++|+++++..++ ....-.+.|+
T Consensus 152 ~~~~~D~~~~~~~~~~~~fDvIi~d~~~~~~~--~~~l~~-~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~ 228 (304)
T 3bwc_A 152 TVRVGDGLAFVRQTPDNTYDVVIIDTTDPAGP--ASKLFG-EAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIR 228 (304)
T ss_dssp EEEESCHHHHHHSSCTTCEEEEEEECC-----------CC-HHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHH
T ss_pred EEEECcHHHHHHhccCCceeEEEECCCCcccc--chhhhH-HHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHH
Confidence 4788888776544 356999999998753211 001111 222222223456799999998764 2344457778
Q ss_pred cccee
Q psy17828 412 LFMLQ 416 (1061)
Q Consensus 412 ~WGf~ 416 (1061)
+=||.
T Consensus 229 ~~GF~ 233 (304)
T 3bwc_A 229 ETGFA 233 (304)
T ss_dssp HHTCS
T ss_pred hCCCC
Confidence 88997
No 72
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=29.07 E-value=84 Score=31.18 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=47.8
Q ss_pred HHHHHHHHhhcc--------ccccccchHHHHhhhhhhhhHHHHHHHHHHhhccCcEeeecccCCCCceEEEEeehHhHH
Q psy17828 91 LELELLEKLCDV--------SLVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINESKDDDNQVEIVSVEHVKLL 162 (1061)
Q Consensus 91 ~e~~ll~~L~d~--------~l~lP~~s~~l~~~~~~~~~~~~v~~lL~k~a~q~lI~i~~~~~~~~~~~i~~~~~~kl~ 162 (1061)
.+.+|..+|.+. .+.+|.+-.+|...+.. +++.|..+|.+|..+|+ .++ .. .|+=.|.++|.
T Consensus 154 ~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~--sr~tvsR~l~~L~~~gi-~~~-----~~--~i~I~d~~~L~ 223 (237)
T 3fx3_A 154 GAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGM--KPESLSRAFSRLKAAGV-TVK-----RN--HAEIEDIALLR 223 (237)
T ss_dssp HHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTC--CHHHHHHHHHHHGGGTE-ECC-----TT--EEEESCHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCC--CHHHHHHHHHHHHHCCe-Eee-----CC--EEEEcCHHHHH
Confidence 355666665543 46789888999999876 88999999999999994 332 22 34445888888
Q ss_pred hHHH
Q psy17828 163 GMVN 166 (1061)
Q Consensus 163 ~m~~ 166 (1061)
++.+
T Consensus 224 ~~~~ 227 (237)
T 3fx3_A 224 DYAE 227 (237)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 7654
No 73
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=28.99 E-value=29 Score=35.26 Aligned_cols=67 Identities=12% Similarity=0.038 Sum_probs=44.0
Q ss_pred CceecccCccCcccCCCccEEEECCCccccccCCCCCCChHHHhcCCccccCCCcEEEEecCc-cchHHHHHHhhccc--
Q psy17828 338 QWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVTG-RAMELGRECLKLFM-- 414 (1061)
Q Consensus 338 q~i~cDlr~~d~~~lgkFdvIlaDPPW~~~~~~~Y~tms~deI~~LPV~~La~~g~LFLWvT~-~~Le~g~elL~~WG-- 414 (1061)
.+++.|+... -..++||+|++|||-.. -..+++. ..|.++|.+++.+.. ...+...+.|+.-|
T Consensus 148 ~~~~~d~~~~--~~~~~~D~v~~~~~~~~--------~~l~~~~----~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~ 213 (255)
T 3mb5_A 148 TIKLKDIYEG--IEEENVDHVILDLPQPE--------RVVEHAA----KALKPGGFFVAYTPCSNQVMRLHEKLREFKDY 213 (255)
T ss_dssp EEECSCGGGC--CCCCSEEEEEECSSCGG--------GGHHHHH----HHEEEEEEEEEEESSHHHHHHHHHHHHHTGGG
T ss_pred EEEECchhhc--cCCCCcCEEEECCCCHH--------HHHHHHH----HHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 5778888743 23357999999988321 0122222 235678999888764 35666788999999
Q ss_pred eecc
Q psy17828 415 LQDE 418 (1061)
Q Consensus 415 f~~e 418 (1061)
|...
T Consensus 214 f~~~ 217 (255)
T 3mb5_A 214 FMKP 217 (255)
T ss_dssp BSCC
T ss_pred cccc
Confidence 8833
No 74
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=28.68 E-value=20 Score=39.61 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=22.8
Q ss_pred CCceecccCccCcccCCCccEEEECCCcccc
Q psy17828 337 PQWIQCDLRYLDMTVLGKFAVIMADPPWDIH 367 (1061)
Q Consensus 337 pq~i~cDlr~~d~~~lgkFdvIlaDPPW~~~ 367 (1061)
-+|+++|++.+++. .++||+|++||||...
T Consensus 270 i~~~~~D~~~~~~~-~~~fD~Ii~npPyg~r 299 (373)
T 3tm4_A 270 IKFIQGDATQLSQY-VDSVDFAISNLPYGLK 299 (373)
T ss_dssp CEEEECCGGGGGGT-CSCEEEEEEECCCC--
T ss_pred eEEEECChhhCCcc-cCCcCEEEECCCCCcc
Confidence 36899999887643 3689999999999754
No 75
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=28.61 E-value=65 Score=27.56 Aligned_cols=51 Identities=14% Similarity=0.319 Sum_probs=42.5
Q ss_pred hHHHHHHHHhhccccccccchHHHHhhhhh--hhhHHHHHHHHHHhhccCcEeeec
Q psy17828 90 DLELELLEKLCDVSLVLPITSQSLMGTLNQ--EYTHLCLINLLHKFATQKLITINE 143 (1061)
Q Consensus 90 ~~e~~ll~~L~d~~l~lP~~s~~l~~~~~~--~~~~~~v~~lL~k~a~q~lI~i~~ 143 (1061)
..|..+|.+|.+. =|.+..+|.+.+.. .++..-|-.+|.+|.++|+|.-..
T Consensus 9 ~~e~~vL~~L~~~---~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 9 DAELEVMKVIWKH---SSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHHHHTS---SSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHcC---CCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 3488899999872 38999999999975 357789999999999999998763
No 76
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=28.05 E-value=43 Score=32.70 Aligned_cols=66 Identities=18% Similarity=0.234 Sum_probs=37.4
Q ss_pred ccceeeeeccCCC--CCCchHHHHHHHHhhcCCceEEEEcCCCCCCCCCceeEEEeeeccCCCCcceeeEEeeccccccc
Q psy17828 859 REKVVGWYHTGPK--LHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVVDEVHDDGSPTTKTFDHVPSEIGAE 936 (1061)
Q Consensus 859 kE~IVGWYsTGse--lt~~s~lIHefys~~~~~PIhL~VDt~~~~~~LPi~AYvsv~ev~~dGs~~~k~Fv~VP~~I~ae 936 (1061)
.+.|||||+|=+. ..+...-+..++ .+..++|+|.+... ....+.+|...+ .+| .|.+.|+.|...
T Consensus 75 g~~ivG~yHSHP~~~~~PS~~D~~~~~---~~~~~~lIvs~~~~-~~~~~~af~~~~---~~g-----~~~e~~i~v~~~ 142 (153)
T 2kcq_A 75 GLDVVGVYHSHPDHPARPSATDLEEAT---FPGFTYVIVSVRDG-APEALTAWALAP---DRS-----EFHREDIVRPDP 142 (153)
T ss_dssp TCEEEEEEEECSSSSSSCCHHHHHTCC---CTTSEEEEEEEETT-EEEEEEEEEECT---TCS-----CEEEECCBCCCS
T ss_pred CCeEEEEEeCCCCCCCCCCHHHHHhhh---cCCCeEEEEECCCC-CccEEEEEEEeC---CCC-----cEEEEEEEEecC
Confidence 4689999987542 333333343321 24578999976421 112366776321 222 489999888654
No 77
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=27.80 E-value=26 Score=39.46 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=22.8
Q ss_pred CceecccCccCcccCCCccEEEECCCcccc
Q psy17828 338 QWIQCDLRYLDMTVLGKFAVIMADPPWDIH 367 (1061)
Q Consensus 338 q~i~cDlr~~d~~~lgkFdvIlaDPPW~~~ 367 (1061)
++++.|+..+.. .++||+|++||||-..
T Consensus 286 ~~~~~D~~~l~~--~~~fD~Iv~NPPYG~r 313 (384)
T 3ldg_A 286 KLKQMRLQDFKT--NKINGVLISNPPYGER 313 (384)
T ss_dssp EEEECCGGGCCC--CCCSCEEEECCCCTTT
T ss_pred EEEECChHHCCc--cCCcCEEEECCchhhc
Confidence 588999988654 3589999999999754
No 78
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=27.59 E-value=10 Score=42.94 Aligned_cols=73 Identities=12% Similarity=0.028 Sum_probs=40.8
Q ss_pred CceecccCccCcc---cCCCccEEEECCCc-cccccCCCCCCChHHHhcC---CccccCCCcEEEEecCccchHHHHHHh
Q psy17828 338 QWIQCDLRYLDMT---VLGKFAVIMADPPW-DIHMELPYGTMSDDEMRQL---GIPQLQDEGLLFLWVTGRAMELGRECL 410 (1061)
Q Consensus 338 q~i~cDlr~~d~~---~lgkFdvIlaDPPW-~~~~~~~Y~tms~deI~~L---PV~~La~~g~LFLWvT~~~Le~g~elL 410 (1061)
+.+..|.+.|=-. .-++||+|++|||= .+..... ...+.+-.+.+ -...|.++|+++.|..+..++....++
T Consensus 248 ~vi~~Da~~~L~~~~~~~~~fDvII~D~~d~P~~~~p~-~L~t~eFy~~~~~~~~~~L~pgGilv~qs~s~~~~e~~~~~ 326 (364)
T 2qfm_A 248 QVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPE-EDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLY 326 (364)
T ss_dssp EEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC-----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHH
T ss_pred EEEECcHHHHHHhhhccCCCceEEEECCCCcccCcCch-hhhHHHHHHHHHHHHHhhCCCCcEEEEEcCCcchHHHHHHH
Confidence 3566666654222 23689999999964 2211110 11112222221 135578899999999988876655544
Q ss_pred h
Q psy17828 411 K 411 (1061)
Q Consensus 411 ~ 411 (1061)
+
T Consensus 327 ~ 327 (364)
T 2qfm_A 327 E 327 (364)
T ss_dssp H
T ss_pred H
Confidence 4
No 79
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=27.06 E-value=12 Score=42.90 Aligned_cols=30 Identities=13% Similarity=0.070 Sum_probs=21.5
Q ss_pred CCceecccCcc-CcccCCCccEEEECCCccc
Q psy17828 337 PQWIQCDLRYL-DMTVLGKFAVIMADPPWDI 366 (1061)
Q Consensus 337 pq~i~cDlr~~-d~~~lgkFdvIlaDPPW~~ 366 (1061)
-+|+++|+..+ +....++||+|++|||+.-
T Consensus 145 i~~i~~Da~~~L~~~~~~~fDvV~lDPPrr~ 175 (410)
T 3ll7_A 145 VNILTGDFKEYLPLIKTFHPDYIYVDPARRS 175 (410)
T ss_dssp EEEEESCGGGSHHHHHHHCCSEEEECCEEC-
T ss_pred EEEEECcHHHhhhhccCCCceEEEECCCCcC
Confidence 36899998864 2211258999999999975
No 80
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=26.98 E-value=46 Score=36.19 Aligned_cols=78 Identities=10% Similarity=-0.054 Sum_probs=42.9
Q ss_pred CCc-eecccCccCcccCCCccEEEECCC--ccccccC-CCCCCCh-HHHhcCCccccCCCcEEEE--ecCccchHHHHHH
Q psy17828 337 PQW-IQCDLRYLDMTVLGKFAVIMADPP--WDIHMEL-PYGTMSD-DEMRQLGIPQLQDEGLLFL--WVTGRAMELGREC 409 (1061)
Q Consensus 337 pq~-i~cDlr~~d~~~lgkFdvIlaDPP--W~~~~~~-~Y~tms~-deI~~LPV~~La~~g~LFL--WvT~~~Le~g~el 409 (1061)
-.| ++.|++.+++. ++||+|+.|++ |.-.... +...+.. +++.+.=...|.++|.+++ |.. ...+.-+++
T Consensus 107 v~~~i~gD~~~~~~~--~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~-~~~~~l~~~ 183 (290)
T 2xyq_A 107 ADSTLIGDCATVHTA--NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH-SWNADLYKL 183 (290)
T ss_dssp SSEEEESCGGGCCCS--SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS-SCCHHHHHH
T ss_pred CEEEEECccccCCcc--CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc-CCHHHHHHH
Confidence 357 88999876543 78999999953 4211111 1111111 1222111223456776665 443 334567788
Q ss_pred hhccceec
Q psy17828 410 LKLFMLQD 417 (1061)
Q Consensus 410 L~~WGf~~ 417 (1061)
|++.||..
T Consensus 184 l~~~GF~~ 191 (290)
T 2xyq_A 184 MGHFSWWT 191 (290)
T ss_dssp HTTEEEEE
T ss_pred HHHcCCcE
Confidence 99999973
No 81
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=26.16 E-value=29 Score=38.91 Aligned_cols=28 Identities=18% Similarity=0.411 Sum_probs=22.1
Q ss_pred CceecccCccCcccCCCccEEEECCCcccc
Q psy17828 338 QWIQCDLRYLDMTVLGKFAVIMADPPWDIH 367 (1061)
Q Consensus 338 q~i~cDlr~~d~~~lgkFdvIlaDPPW~~~ 367 (1061)
+|+++|+..+.. .++||+|++||||-.+
T Consensus 287 ~~~~~D~~~l~~--~~~~D~Iv~NPPyg~r 314 (385)
T 3ldu_A 287 EFNVGDATQFKS--EDEFGFIITNPPYGER 314 (385)
T ss_dssp EEEECCGGGCCC--SCBSCEEEECCCCCCS
T ss_pred EEEECChhhcCc--CCCCcEEEECCCCcCc
Confidence 578889887554 4689999999999643
No 82
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=25.97 E-value=28 Score=38.19 Aligned_cols=27 Identities=26% Similarity=0.508 Sum_probs=20.8
Q ss_pred CceecccCccCcccCCCccEEEECCCccc
Q psy17828 338 QWIQCDLRYLDMTVLGKFAVIMADPPWDI 366 (1061)
Q Consensus 338 q~i~cDlr~~d~~~lgkFdvIlaDPPW~~ 366 (1061)
.++++|+..++ ..++||+|+++|||-.
T Consensus 84 ~~~~~D~~~~~--~~~~fD~Ii~NPPy~~ 110 (421)
T 2ih2_A 84 EGILADFLLWE--PGEAFDLILGNPPYGI 110 (421)
T ss_dssp EEEESCGGGCC--CSSCEEEEEECCCCCC
T ss_pred cEEeCChhhcC--ccCCCCEEEECcCccC
Confidence 46788877643 3469999999999964
No 83
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=25.22 E-value=15 Score=36.42 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHhhcc-----ccccccchHHHHhhhhhhhhHHHHHHHHHHhhccCcEeeec
Q psy17828 92 ELELLEKLCDV-----SLVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINE 143 (1061)
Q Consensus 92 e~~ll~~L~d~-----~l~lP~~s~~l~~~~~~~~~~~~v~~lL~k~a~q~lI~i~~ 143 (1061)
+.+|..+|.+. .+.+|.+-.+|...+.. +++.|..+|.+|..+|+|.+..
T Consensus 144 ~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~--sr~tvsR~l~~L~~~G~I~~~~ 198 (213)
T 1o5l_A 144 REKLMNFLVRHMNEKRELTLPVTLEELSRLFGC--ARPALSRVFQELEREGYIEKHG 198 (213)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHhccCCcccCCCCHHHHHHHhCC--CHHHHHHHHHHHHHCCeEEEcC
Confidence 45555555543 36778888888888766 8899999999999999998863
No 84
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=24.83 E-value=23 Score=35.71 Aligned_cols=27 Identities=30% Similarity=0.528 Sum_probs=22.1
Q ss_pred CceecccCccCcccCCCccEEEECCCccc
Q psy17828 338 QWIQCDLRYLDMTVLGKFAVIMADPPWDI 366 (1061)
Q Consensus 338 q~i~cDlr~~d~~~lgkFdvIlaDPPW~~ 366 (1061)
.|+++|+..+. ..++||+|++||||..
T Consensus 130 ~~~~~d~~~~~--~~~~~D~v~~~~~~~~ 156 (241)
T 3gdh_A 130 EFICGDFLLLA--SFLKADVVFLSPPWGG 156 (241)
T ss_dssp EEEESCHHHHG--GGCCCSEEEECCCCSS
T ss_pred EEEECChHHhc--ccCCCCEEEECCCcCC
Confidence 58888988765 4479999999999974
No 85
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=24.80 E-value=24 Score=33.46 Aligned_cols=70 Identities=10% Similarity=0.070 Sum_probs=43.3
Q ss_pred CceecccCccCcccCCCccEEEECCCccccccCCCCCCChHHHhcCCccccCCCcEEEEecC-ccchHHHHHHhhcccee
Q psy17828 338 QWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVT-GRAMELGRECLKLFMLQ 416 (1061)
Q Consensus 338 q~i~cDlr~~d~~~lgkFdvIlaDPPW~~~~~~~Y~tms~deI~~LPV~~La~~g~LFLWvT-~~~Le~g~elL~~WGf~ 416 (1061)
.++++|+.. .+...++||+|++++++.. ..++.+-=...|.++|.+++-.. ....+...+.+++.||+
T Consensus 85 ~~~~~d~~~-~~~~~~~~D~v~~~~~~~~----------~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~ 153 (192)
T 1l3i_A 85 TLMEGDAPE-ALCKIPDIDIAVVGGSGGE----------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFD 153 (192)
T ss_dssp EEEESCHHH-HHTTSCCEEEEEESCCTTC----------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCC
T ss_pred EEEecCHHH-hcccCCCCCEEEECCchHH----------HHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCc
Confidence 467777765 2333468999999987631 12222111233456888776554 34556677899999997
Q ss_pred cc
Q psy17828 417 DE 418 (1061)
Q Consensus 417 ~e 418 (1061)
.+
T Consensus 154 ~~ 155 (192)
T 1l3i_A 154 VN 155 (192)
T ss_dssp CE
T ss_pred eE
Confidence 44
No 86
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=24.68 E-value=67 Score=31.45 Aligned_cols=68 Identities=12% Similarity=-0.015 Sum_probs=43.8
Q ss_pred CceecccCccCcccCCCccEEEECCCccccccCCCCCCChHHHhcCCccccCCCcEEEEecC-ccchHHHHHHhhcccee
Q psy17828 338 QWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVT-GRAMELGRECLKLFMLQ 416 (1061)
Q Consensus 338 q~i~cDlr~~d~~~lgkFdvIlaDPPW~~~~~~~Y~tms~deI~~LPV~~La~~g~LFLWvT-~~~Le~g~elL~~WGf~ 416 (1061)
.+++.|+... +...++||+|+++++.. ...++.+-=...|.++|.+++-+. ....+...+.|++.||.
T Consensus 93 ~~~~~d~~~~-~~~~~~~D~i~~~~~~~----------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~ 161 (204)
T 3e05_A 93 TLVEAFAPEG-LDDLPDPDRVFIGGSGG----------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGYM 161 (204)
T ss_dssp EEEECCTTTT-CTTSCCCSEEEESCCTT----------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTCE
T ss_pred EEEeCChhhh-hhcCCCCCEEEECCCCc----------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCCc
Confidence 4677777532 22347899999998653 222333322334677888887644 35667778999999985
No 87
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=24.61 E-value=1.5e+02 Score=27.60 Aligned_cols=79 Identities=11% Similarity=0.033 Sum_probs=58.6
Q ss_pred cCChhHHHH-HHHHhhccccccccchHHHHhhhhh-----hhhHHHHHHHHHHhhccCcEeeecccC-C-CC---ceEEE
Q psy17828 86 KLNPDLELE-LLEKLCDVSLVLPITSQSLMGTLNQ-----EYTHLCLINLLHKFATQKLITINESKD-D-DN---QVEIV 154 (1061)
Q Consensus 86 ~~d~~~e~~-ll~~L~d~~l~lP~~s~~l~~~~~~-----~~~~~~v~~lL~k~a~q~lI~i~~~~~-~-~~---~~~i~ 154 (1061)
...-|++-. +|.+|++ =|+.+-+|...+.. .++.-.|-++|.+|..+|+|+...... + .. -|.||
T Consensus 17 ~l~~~l~~~~IL~lL~~----~~~~Gyei~~~l~~~~~~~~is~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT 92 (115)
T 2dql_A 17 YLCQEVAICYILYVLLQ----GESYGTELIQQLETEHPTYRLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVS 92 (115)
T ss_dssp ECCHHHHHHHHHHHHTT----SCBCHHHHHHHHHHHCTTEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEEC
T ss_pred hhhhhHHHHHHHHHHHh----CCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEEC
Confidence 455677877 8888986 38999999888864 467899999999999999999875543 1 22 56676
Q ss_pred EeehHhHHhHHHHh
Q psy17828 155 SVEHVKLLGMVNEV 168 (1061)
Q Consensus 155 ~~~~~kl~~m~~~~ 168 (1061)
..=.+.+.+...+.
T Consensus 93 ~~G~~~l~~~~~~~ 106 (115)
T 2dql_A 93 PEWQHQAEDLARLW 106 (115)
T ss_dssp GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655554
No 88
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=24.42 E-value=32 Score=38.70 Aligned_cols=29 Identities=17% Similarity=0.409 Sum_probs=22.9
Q ss_pred CCceecccCccCcccCCCccEEEECCCcccc
Q psy17828 337 PQWIQCDLRYLDMTVLGKFAVIMADPPWDIH 367 (1061)
Q Consensus 337 pq~i~cDlr~~d~~~lgkFdvIlaDPPW~~~ 367 (1061)
-+++++|+..+.. .++||+|++||||-.+
T Consensus 292 I~~~~~D~~~~~~--~~~fD~Iv~NPPYg~r 320 (393)
T 3k0b_A 292 ITFRQLQVADFQT--EDEYGVVVANPPYGER 320 (393)
T ss_dssp SEEEECCGGGCCC--CCCSCEEEECCCCCCS
T ss_pred eEEEECChHhCCC--CCCCCEEEECCCCccc
Confidence 3588999987654 3589999999999643
No 89
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=24.29 E-value=62 Score=36.54 Aligned_cols=69 Identities=13% Similarity=0.106 Sum_probs=43.4
Q ss_pred CceecccCccCcc---cCCCccEEEECCCccccccCCCCCCChHHHhcCCccccCCCcEEEEecCccchHHHHHHhhccc
Q psy17828 338 QWIQCDLRYLDMT---VLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVTGRAMELGRECLKLFM 414 (1061)
Q Consensus 338 q~i~cDlr~~d~~---~lgkFdvIlaDPPW~~~~~~~Y~tms~deI~~LPV~~La~~g~LFLWvT~~~Le~g~elL~~WG 414 (1061)
.|++.|+..+--. ..++||+|++|||..- + .+-+..| ..+.+++++++=|....+......|..=|
T Consensus 337 ~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g--------~-~~~~~~l--~~~~p~~ivyvsc~p~tlard~~~l~~~G 405 (433)
T 1uwv_A 337 TFYHENLEEDVTKQPWAKNGFDKVLLDPARAG--------A-AGVMQQI--IKLEPIRIVYVSCNPATLARDSEALLKAG 405 (433)
T ss_dssp EEEECCTTSCCSSSGGGTTCCSEEEECCCTTC--------C-HHHHHHH--HHHCCSEEEEEESCHHHHHHHHHHHHHTT
T ss_pred EEEECCHHHHhhhhhhhcCCCCEEEECCCCcc--------H-HHHHHHH--HhcCCCeEEEEECChHHHHhhHHHHHHCC
Confidence 5888888763211 1258999999999752 1 1222222 23456888888776666666666666668
Q ss_pred eec
Q psy17828 415 LQD 417 (1061)
Q Consensus 415 f~~ 417 (1061)
|+.
T Consensus 406 y~~ 408 (433)
T 1uwv_A 406 YTI 408 (433)
T ss_dssp CEE
T ss_pred cEE
Confidence 883
No 90
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=23.91 E-value=24 Score=35.22 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=31.3
Q ss_pred CceecccCccCcccCCCccEEEECCCccccccCCCCCCChHHHhcCCccccCCCcEEEEecC
Q psy17828 338 QWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVT 399 (1061)
Q Consensus 338 q~i~cDlr~~d~~~lgkFdvIlaDPPW~~~~~~~Y~tms~deI~~LPV~~La~~g~LFLWvT 399 (1061)
.+++.|+..+.....++||+|++|||+... .+. --.+++.+ ..-|.++|++++-+.
T Consensus 106 ~~~~~D~~~~~~~~~~~fD~V~~~~p~~~~---~~~-~~l~~l~~--~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 106 RVVNSNAMSFLAQKGTPHNIVFVDPPFRRG---LLE-ETINLLED--NGWLADEALIYVESE 161 (202)
T ss_dssp EEECSCHHHHHSSCCCCEEEEEECCSSSTT---THH-HHHHHHHH--TTCEEEEEEEEEEEE
T ss_pred EEEECCHHHHHhhcCCCCCEEEECCCCCCC---cHH-HHHHHHHh--cCccCCCcEEEEEEC
Confidence 578888776422234689999999995421 000 01222332 122567887776554
No 91
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=23.77 E-value=29 Score=37.45 Aligned_cols=61 Identities=13% Similarity=-0.033 Sum_probs=32.5
Q ss_pred CceecccCccCcccCCCccEEEECCCccccccCCCCCCChHHHhcCCccccCCCcEEEEecCcc
Q psy17828 338 QWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVTGR 401 (1061)
Q Consensus 338 q~i~cDlr~~d~~~lgkFdvIlaDPPW~~~~~~~Y~tms~deI~~LPV~~La~~g~LFLWvT~~ 401 (1061)
.++..|.+.+--...++||+|++|+|=.... .....+ .++.+.--..|.++|++.++++++
T Consensus 141 ~~~~~D~~~~l~~~~~~fDvIi~D~~~p~~~--~~~l~~-~~f~~~~~~~LkpgG~lv~~~~s~ 201 (294)
T 3adn_A 141 KLVIDDGVNFVNQTSQTFDVIISDCTDPIGP--GESLFT-SAFYEGCKRCLNPGGIFVAQNGVC 201 (294)
T ss_dssp CEECSCSCC---CCCCCEEEEEECC------------CC-HHHHHHHHHTEEEEEEEEEEEEEC
T ss_pred EEEEChHHHHHhhcCCCccEEEECCCCccCc--chhccH-HHHHHHHHHhcCCCCEEEEecCCc
Confidence 5788888765323346899999998732211 111112 333333244567899999987644
No 92
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=22.89 E-value=1.6e+02 Score=25.22 Aligned_cols=47 Identities=15% Similarity=0.045 Sum_probs=37.5
Q ss_pred HHHHHHHhhccccccccchHHHHhhhhhhhhHHHHHHHHHHhhccCcEeeec
Q psy17828 92 ELELLEKLCDVSLVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINE 143 (1061)
Q Consensus 92 e~~ll~~L~d~~l~lP~~s~~l~~~~~~~~~~~~v~~lL~k~a~q~lI~i~~ 143 (1061)
.+++|.+|.+. =|.+..+|.+.+. ++...|...|.+|.++|+|.-..
T Consensus 2 r~~Il~~L~~~---~~~s~~eLa~~lg--vs~~tv~r~L~~L~~~GlI~~~~ 48 (81)
T 2htj_A 2 KNEILEFLNRH---NGGKTAEIAEALA--VTDYQARYYLLLLEKAGMVQRSP 48 (81)
T ss_dssp HHHHHHHHHHS---CCCCHHHHHHHHT--SCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEEec
Confidence 46788888763 2678889988885 48889999999999999997543
No 93
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=22.84 E-value=53 Score=24.45 Aligned_cols=23 Identities=43% Similarity=0.572 Sum_probs=17.9
Q ss_pred HHHHHHHHhhHHHHHHHHHhhhh
Q psy17828 6 EEIQAIKSKRNSLREKLQKRKQE 28 (1061)
Q Consensus 6 ~~iqa~k~~~~~lre~l~~r~~~ 28 (1061)
.|.-.+|.|.+||-|+|+|-.||
T Consensus 6 kELtQIK~kvDsLLe~Le~~~~~ 28 (28)
T 1txp_A 6 KELTQIKQKVDSLLENLEKIEKE 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhcC
Confidence 35567888999999999986543
No 94
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=22.25 E-value=32 Score=34.70 Aligned_cols=69 Identities=12% Similarity=0.083 Sum_probs=39.4
Q ss_pred CceecccCccC-cc-cCCCccEEEECCCccccccCCCCCCChH-HHhcCCcc-ccCCCcEEEEecCccc----------h
Q psy17828 338 QWIQCDLRYLD-MT-VLGKFAVIMADPPWDIHMELPYGTMSDD-EMRQLGIP-QLQDEGLLFLWVTGRA----------M 403 (1061)
Q Consensus 338 q~i~cDlr~~d-~~-~lgkFdvIlaDPPW~~~~~~~Y~tms~d-eI~~LPV~-~La~~g~LFLWvT~~~----------L 403 (1061)
.|+++|+...+ +. ..++||+|++|||.. ... .+.. .+. .|.++|.+++-+.... +
T Consensus 129 ~~~~~d~~~~~~~~~~~~~~D~V~~~~~~~----------~~~~~~~~-~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 197 (233)
T 2ipx_A 129 IPVIEDARHPHKYRMLIAMVDVIFADVAQP----------DQTRIVAL-NAHTFLRNGGHFVISIKANCIDSTASAEAVF 197 (233)
T ss_dssp EEECSCTTCGGGGGGGCCCEEEEEECCCCT----------THHHHHHH-HHHHHEEEEEEEEEEEEHHHHCSSSCHHHHH
T ss_pred EEEEcccCChhhhcccCCcEEEEEEcCCCc----------cHHHHHHH-HHHHHcCCCeEEEEEEcccccccCCCHHHHH
Confidence 47888888754 22 236899999998821 111 1111 122 3456887776333211 2
Q ss_pred HHHHHHhhccceec
Q psy17828 404 ELGRECLKLFMLQD 417 (1061)
Q Consensus 404 e~g~elL~~WGf~~ 417 (1061)
....++|++-||+.
T Consensus 198 ~~~~~~l~~~Gf~~ 211 (233)
T 2ipx_A 198 ASEVKKMQQENMKP 211 (233)
T ss_dssp HHHHHTTGGGTEEE
T ss_pred HHHHHHHHHCCCce
Confidence 22367888889983
No 95
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=22.13 E-value=37 Score=34.68 Aligned_cols=29 Identities=14% Similarity=0.060 Sum_probs=20.3
Q ss_pred CceecccCccCcc----cCCCccEEEECCCccc
Q psy17828 338 QWIQCDLRYLDMT----VLGKFAVIMADPPWDI 366 (1061)
Q Consensus 338 q~i~cDlr~~d~~----~lgkFdvIlaDPPW~~ 366 (1061)
.|+++|+...... ..++||+|+++||+-.
T Consensus 148 ~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~ 180 (250)
T 1o9g_A 148 AIRTADVFDPRALSAVLAGSAPDVVLTDLPYGE 180 (250)
T ss_dssp EEEECCTTCGGGHHHHHTTCCCSEEEEECCGGG
T ss_pred ceeecccccccccccccCCCCceEEEeCCCeec
Confidence 3888888763211 2238999999999964
No 96
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=21.92 E-value=2.2e+02 Score=26.14 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=40.4
Q ss_pred HHHHHHHhhccccccccchHHHHhhhhhhhhHHHHHHHHHHhhccCcEeeecccC
Q psy17828 92 ELELLEKLCDVSLVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINESKD 146 (1061)
Q Consensus 92 e~~ll~~L~d~~l~lP~~s~~l~~~~~~~~~~~~v~~lL~k~a~q~lI~i~~~~~ 146 (1061)
|..+|.+|.... |++-.+|...+. ++...|-.+|.+|.++|+|.......
T Consensus 42 ~~~iL~~l~~~~---~~t~~ela~~l~--~~~~~vs~~l~~Le~~Glv~r~~~~~ 91 (152)
T 3bj6_A 42 QRAILEGLSLTP---GATAPQLGAALQ--MKRQYISRILQEVQRAGLIERRTNPE 91 (152)
T ss_dssp HHHHHHHHHHST---TEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEECCSS
T ss_pred HHHHHHHHHhCC---CCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCeeecCCcc
Confidence 778888887633 778888888875 47888999999999999999875444
No 97
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=21.77 E-value=67 Score=32.45 Aligned_cols=29 Identities=14% Similarity=0.331 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHhhhhhhhh
Q psy17828 4 AWEEIQAIKSKRNSLREKLQKRKQERKDI 32 (1061)
Q Consensus 4 ~w~~iqa~k~~~~~lre~l~~r~~~~~~~ 32 (1061)
.+++|++++..+..++||+++.+.+-|+|
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~LqeL 31 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQLQEL 31 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999998888864
No 98
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=21.49 E-value=37 Score=35.95 Aligned_cols=61 Identities=11% Similarity=0.028 Sum_probs=35.5
Q ss_pred CceecccCccCcccCCCccEEEECCCccccccCCCCCCChHHHhcCCccccCCCcEEEEecCcc
Q psy17828 338 QWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVTGR 401 (1061)
Q Consensus 338 q~i~cDlr~~d~~~lgkFdvIlaDPPW~~~~~~~Y~tms~deI~~LPV~~La~~g~LFLWvT~~ 401 (1061)
.++..|.+.+--...++||+|++|+|..... +....+ .++.+.=...|.++|++.+|+.++
T Consensus 132 ~v~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~--~~~l~~-~~~~~~~~~~L~pgG~lv~~~~~~ 192 (275)
T 1iy9_A 132 DVQVDDGFMHIAKSENQYDVIMVDSTEPVGP--AVNLFT-KGFYAGIAKALKEDGIFVAQTDNP 192 (275)
T ss_dssp EEEESCSHHHHHTCCSCEEEEEESCSSCCSC--CCCCST-THHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEEECcHHHHHhhCCCCeeEEEECCCCCCCc--chhhhH-HHHHHHHHHhcCCCcEEEEEcCCc
Confidence 4677777653112236899999999863321 111122 233322234567899999998764
No 99
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=21.29 E-value=51 Score=33.57 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=19.9
Q ss_pred CceecccCcc--C-ccc--CCCccEEEECCCcc
Q psy17828 338 QWIQCDLRYL--D-MTV--LGKFAVIMADPPWD 365 (1061)
Q Consensus 338 q~i~cDlr~~--d-~~~--lgkFdvIlaDPPW~ 365 (1061)
.+++.|+... + +.. .++||+|+++||+-
T Consensus 119 ~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~ 151 (254)
T 2h00_A 119 KVVKVPQKTLLMDALKEESEIIYDFCMCNPPFF 151 (254)
T ss_dssp EEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC
T ss_pred EEEEcchhhhhhhhhhcccCCcccEEEECCCCc
Confidence 5788887752 1 222 25899999999985
No 100
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=21.23 E-value=17 Score=38.53 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=19.6
Q ss_pred CceecccCccCcccC---CCccEEEECCCccc
Q psy17828 338 QWIQCDLRYLDMTVL---GKFAVIMADPPWDI 366 (1061)
Q Consensus 338 q~i~cDlr~~d~~~l---gkFdvIlaDPPW~~ 366 (1061)
+|++.|...+--... +.||+|++||||..
T Consensus 142 ~~~~~d~~~~l~~~~~~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 142 NLHFGNAAEQMPALVKTQGKPDIVYLDPMYPE 173 (258)
T ss_dssp EEEESCHHHHHHHHHHHHCCCSEEEECCCC--
T ss_pred EEEECCHHHHHHhhhccCCCccEEEECCCCCC
Confidence 578888876421111 68999999999953
No 101
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=21.11 E-value=20 Score=34.19 Aligned_cols=56 Identities=11% Similarity=0.197 Sum_probs=31.3
Q ss_pred CceecccCccCcccCCCccEEEECCCccccccCCCCCCChHHHhcCCccccCCCcEEEEecC
Q psy17828 338 QWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVT 399 (1061)
Q Consensus 338 q~i~cDlr~~d~~~lgkFdvIlaDPPW~~~~~~~Y~tms~deI~~LPV~~La~~g~LFLWvT 399 (1061)
.+++.|+..+.....++||+|++|||+..... . -..+.+.+ ...|.++|.+++-+.
T Consensus 84 ~~~~~d~~~~~~~~~~~fD~i~~~~~~~~~~~---~-~~~~~l~~--~~~L~~gG~l~~~~~ 139 (177)
T 2esr_A 84 TLLKMEAERAIDCLTGRFDLVFLDPPYAKETI---V-ATIEALAA--KNLLSEQVMVVCETD 139 (177)
T ss_dssp EEECSCHHHHHHHBCSCEEEEEECCSSHHHHH---H-HHHHHHHH--TTCEEEEEEEEEEEE
T ss_pred EEEECcHHHhHHhhcCCCCEEEECCCCCcchH---H-HHHHHHHh--CCCcCCCcEEEEEEC
Confidence 47778877632223367999999999742110 0 00122322 234567888776554
No 102
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=21.00 E-value=1.1e+02 Score=28.03 Aligned_cols=74 Identities=11% Similarity=0.136 Sum_probs=53.7
Q ss_pred HHHHHHHHhhccccccccchHHHHhhhhh--hhhHHHHHHHHHHhhccCcEeeecccCCCC---ceEEEEeehHhHHhHH
Q psy17828 91 LELELLEKLCDVSLVLPITSQSLMGTLNQ--EYTHLCLINLLHKFATQKLITINESKDDDN---QVEIVSVEHVKLLGMV 165 (1061)
Q Consensus 91 ~e~~ll~~L~d~~l~lP~~s~~l~~~~~~--~~~~~~v~~lL~k~a~q~lI~i~~~~~~~~---~~~i~~~~~~kl~~m~ 165 (1061)
++-.+|..|++ =|+.+-+|...|.. .++...|-++|.+|..+|+|+-.....+.. -|.+|..=...+.++.
T Consensus 10 l~~~IL~~L~~----~~~~gyel~~~l~~~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~~ 85 (108)
T 3l7w_A 10 IEYLILAIVSK----HDSYGYDISQTIKLIASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYLT 85 (108)
T ss_dssp HHHHHHHHHHH----SCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHc----CCCcHHHHHHHHHHHhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHHH
Confidence 57778999986 38899999888864 467799999999999999999875433322 3555555555555555
Q ss_pred HHh
Q psy17828 166 NEV 168 (1061)
Q Consensus 166 ~~~ 168 (1061)
.+.
T Consensus 86 ~~~ 88 (108)
T 3l7w_A 86 KEW 88 (108)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 103
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=20.97 E-value=57 Score=34.73 Aligned_cols=73 Identities=11% Similarity=0.041 Sum_probs=39.9
Q ss_pred CceecccCccCcccCCCc---cEEEECCCcccccc-----CCCCC-C-------ChHHHhcCCccccCCCcEEEEecCcc
Q psy17828 338 QWIQCDLRYLDMTVLGKF---AVIMADPPWDIHME-----LPYGT-M-------SDDEMRQLGIPQLQDEGLLFLWVTGR 401 (1061)
Q Consensus 338 q~i~cDlr~~d~~~lgkF---dvIlaDPPW~~~~~-----~~Y~t-m-------s~deI~~LPV~~La~~g~LFLWvT~~ 401 (1061)
.|+++|+.... .++| |+|+++||+--... ..|.. + ..+-++.+-...+.++|.+++-+...
T Consensus 176 ~~~~~D~~~~~---~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~ 252 (284)
T 1nv8_A 176 FVRKGEFLEPF---KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED 252 (284)
T ss_dssp EEEESSTTGGG---GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT
T ss_pred EEEECcchhhc---ccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECch
Confidence 57888887631 1578 99999999953211 00110 0 00112222113445788888877665
Q ss_pred chHHHHHHhhcc
Q psy17828 402 AMELGRECLKLF 413 (1061)
Q Consensus 402 ~Le~g~elL~~W 413 (1061)
..+...+++++-
T Consensus 253 q~~~v~~~~~~~ 264 (284)
T 1nv8_A 253 QVEELKKIVSDT 264 (284)
T ss_dssp CHHHHTTTSTTC
T ss_pred HHHHHHHHHHhC
Confidence 555555555543
No 104
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=20.17 E-value=56 Score=33.63 Aligned_cols=65 Identities=18% Similarity=0.295 Sum_probs=40.8
Q ss_pred CceecccCccCcccCCCccEEEECCC--ccccccCCCCCCChHHHhcCCccccCCCcEEEEecCc-cchHHHHHHhhc-c
Q psy17828 338 QWIQCDLRYLDMTVLGKFAVIMADPP--WDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVTG-RAMELGRECLKL-F 413 (1061)
Q Consensus 338 q~i~cDlr~~d~~~lgkFdvIlaDPP--W~~~~~~~Y~tms~deI~~LPV~~La~~g~LFLWvT~-~~Le~g~elL~~-W 413 (1061)
.++..|+....+. .++||+|++|+| |.+ .+++. ..|.++|.+++.+.. ..+....+.|+. .
T Consensus 156 ~~~~~d~~~~~~~-~~~~D~v~~~~~~~~~~----------l~~~~----~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~ 220 (280)
T 1i9g_A 156 RLVVSDLADSELP-DGSVDRAVLDMLAPWEV----------LDAVS----RLLVAGGVLMVYVATVTQLSRIVEALRAKQ 220 (280)
T ss_dssp EEECSCGGGCCCC-TTCEEEEEEESSCGGGG----------HHHHH----HHEEEEEEEEEEESSHHHHHHHHHHHHHHS
T ss_pred EEEECchHhcCCC-CCceeEEEECCcCHHHH----------HHHHH----HhCCCCCEEEEEeCCHHHHHHHHHHHHhcC
Confidence 4677888776432 358999999976 211 22221 234568888887764 344555566666 8
Q ss_pred ceec
Q psy17828 414 MLQD 417 (1061)
Q Consensus 414 Gf~~ 417 (1061)
||..
T Consensus 221 ~f~~ 224 (280)
T 1i9g_A 221 CWTE 224 (280)
T ss_dssp SBCC
T ss_pred CcCC
Confidence 8883
Done!