RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17828
(1061 letters)
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34,
JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P
ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Length = 187
Score = 174 bits (441), Expect = 6e-50
Identities = 116/142 (81%), Positives = 129/142 (90%), Gaps = 1/142 (0%)
Query: 632 EVVTSKVVVHPLVLLSVVDHFNRMSKIGNQKRVVGVLLGCWKGKGILDVSNSFAVPFDED 691
E+ KVVVHPLVLLSVVDHFNR+ K+GNQKRVVGVLLG W+ K + DVSNSFAVPFDED
Sbjct: 4 ELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVL-DVSNSFAVPFDED 62
Query: 692 DKDNSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGPKLHQNDIQINELIRRYCTNSVL 751
DKD+SVWFLDHDYLENMYGMFKKVNARE++VGWYHTGPKLH+NDI INEL++RYC NSVL
Sbjct: 63 DKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVL 122
Query: 752 VIIDAKPKELGLPTEAYRVVDE 773
VIID KPK+LGLPTEAY V+E
Sbjct: 123 VIIDVKPKDLGLPTEAYISVEE 144
Score = 130 bits (329), Expect = 6e-35
Identities = 83/100 (83%), Positives = 94/100 (94%)
Query: 858 AREKVVGWYHTGPKLHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVVDEVHD 917
ARE++VGWYHTGPKLH+NDI INEL++RYC NSVLVIID KPK+LGLPTEAY V+EVHD
Sbjct: 88 ARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHD 147
Query: 918 DGSPTTKTFDHVPSEIGAEEAEEVGVEHLLRDIKDTTVGS 957
DG+PT+KTF+HV SEIGAEEAEEVGVEHLLRDIKDTTVG+
Sbjct: 148 DGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGT 187
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P
N-terminal) domain, unknown function; 2.50A {Drosophila
melanogaster}
Length = 141
Score = 166 bits (421), Expect = 7e-48
Identities = 33/139 (23%), Positives = 69/139 (49%), Gaps = 6/139 (4%)
Query: 637 KVVVHPLVLLSVVDHFNRMS-KIGNQKRVVGVLLGCWKGKGILDVSNSFAVPFDEDDKDN 695
+ +HPLV++++ +H+ R + G ++V G L+G KG+ I ++ NSF + D +
Sbjct: 7 TISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNI-EIMNSFELKTDVIGDE- 64
Query: 696 SVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGPKLHQNDIQINELIRRYCTNSVLVIID 755
++ DY +K+V + +GWY TG +DI+I I +++ ++
Sbjct: 65 --TVINKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQLN 122
Query: 756 AKPKELG-LPTEAYRVVDE 773
+ + LP + + + +
Sbjct: 123 PLSRSVDHLPLKLFESLID 141
Score = 73.8 bits (181), Expect = 1e-15
Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 858 AREKVVGWYHTGPKLHQNDIQINELIRRYCTNSVLVIIDAKPKELG-LPTEAYRVVDE 914
+ +GWY TG +DI+I I +++ ++ + + LP + + + +
Sbjct: 84 SDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQLNPLSRSVDHLPLKLFESLID 141
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.6 bits (164), Expect = 2e-11
Identities = 62/443 (13%), Positives = 124/443 (27%), Gaps = 146/443 (32%)
Query: 8 IQAIKSKRNSLREKLQKRKQER----------KDILE------------RDGSLSPARNE 45
I S + LR L+ + E R ++
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT----- 278
Query: 46 EDSVDTSYQT----EEDAIKLNPDLELELLEKLCDVSLTE--EDAIKLNPDLELELLEKL 99
D + + T + ++ L PD LL K D + + + NP
Sbjct: 279 -DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP---------- 327
Query: 100 CDVSLVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINESKDDDNQVEIVSVEHV 159
L S++ ++ L + KL TI ES S+ +
Sbjct: 328 ----RRL-----SIIAESIRD--GLATWDNWKHVNCDKLTTIIES----------SLNVL 366
Query: 160 KLLGMVNEVSKGIKRKADTDTSDYEDD-EDLKKFKDNGD-ETDVMSLLSKPSIREKQVKQ 217
+ ++Y + L F + T ++SL+ I+
Sbjct: 367 -------------------EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV--- 404
Query: 218 IGEEILDLLTKPTAKERSLAERFRSQSGNQVQEYCS-HGTRAECLRMKDTPNICTKLHFR 276
+++ L K SL E+ + S L +K LH R
Sbjct: 405 --MVVVNKLHK-----YSLVEK------QPKESTISIPSIY---LELKVKLENEYALH-R 447
Query: 277 KIIQ--------CHTDESL--GD---CSFLNTCFHMDSCK-----------YVHYEVDGA 312
I+ D D S + H+ + + ++ +
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG--HHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 313 KIK--GISDISDEGNKSLLEKTKLYPPQWIQCDLRYLDMTV--LGKF-----AVIMADPP 363
KI+ + + + L++ K Y +I + + V + F ++
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFY-KPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 364 WDI-HMEL--PYGTMSDDEMRQL 383
D+ + L + ++ +Q+
Sbjct: 565 TDLLRIALMAEDEAIFEEAHKQV 587
Score = 56.0 bits (134), Expect = 6e-08
Identities = 89/603 (14%), Positives = 166/603 (27%), Gaps = 204/603 (33%)
Query: 175 KADTDTSDYED-------DEDLK---KFKDNGDETDVM--SLLSKPSIREKQVKQIGEEI 222
+ D D +D E++ KD T + +LLSK E+ V++ EE+
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ---EEMVQKFVEEV 86
Query: 223 LD-----LLTK-------PTAKERSLAE-RFRSQSGNQV-QEYCSHGTRAEC-------- 260
L L++ P+ R E R R + NQV +Y + +R +
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY--NVSRLQPYLKLRQAL 144
Query: 261 LRMKDTPNI-------CTK-------LHFRKIIQCHTDE----SLGDCS--------FLN 294
L ++ N+ K K+ + +L +C+
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 295 TCFHMDSCKYVHYEVDGAKIKGISDISDEGNKSLLEKTKLYPPQ-------W-------- 339
+ +D + I I E L K+K Y
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAE--LRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 340 -IQCDLRYL----DMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLL 394
+ C + L V + A I ++ T++ DE+ + LL
Sbjct: 263 NLSC--KILLTTRFKQV---TDFLSAATTTHISLDHHSMTLTPDEV----------KSLL 307
Query: 395 FLWVTGRAMELGRE-C------LKLF--MLQDEGLLF-LWVTGRAMELGRECLKLSLNCQ 444
++ R +L RE L + ++D + W +L ++ SLN
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL-TTIIESSLNVL 366
Query: 445 --------------LSQDVEFTWPYLG--W-----------MSKF--------------- 462
L W ++K
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 463 SLHHFFQVVYLAAMIRSIIALHN-LINN-----KITNRDAEVNIEFNFSLQHFSQVVYLA 516
S+ + L + + ALH ++++ + D + H
Sbjct: 427 SIPSIYLE--LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH-------- 476
Query: 517 AMIRSIIALHNLINNKITNRDAEKKEI------TKSKVEDKPQEDKKPEIKVNISSSAQA 570
I H L N + R + + + K+ + + +A
Sbjct: 477 ------IGHH-LKNIEHPERMTLFRMVFLDFRFLEQKI-----------RHDSTAWNASG 518
Query: 571 SSMPASTSRITFLGYMDMAGETYGR----YTHYVPA----LIMSVICN-TRRVMFISHSG 621
S + + Y+ Y R ++P LI S + R +
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
Query: 622 LVE 624
+ E
Sbjct: 579 IFE 581
Score = 54.5 bits (130), Expect = 2e-07
Identities = 96/655 (14%), Positives = 200/655 (30%), Gaps = 199/655 (30%)
Query: 182 DYEDDEDLKKFKDNGDETDVMSLLSKPSIREKQVKQIGEEILDLLTK---------PTAK 232
D+E E ++KD ++S+ + K + + +L+K A
Sbjct: 8 DFETGEHQYQYKD------ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 233 ERS--LAERFRSQSGNQVQEYCSHGTRAECLRMKDTPNICTKLHFRKIIQCHTDESLGDC 290
+ L S+ VQ++ E LR + + + + + S+
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVE-----EVLR-INYKFLMSPIKTEQR-----QPSMMTR 110
Query: 291 SFLNTC--FHMDSCKYVHYEVDGAKIKGISDISDEGNKSLLEKTKLYPPQWIQCDLRYLD 348
++ + D+ + Y V ++++ + ++LLE L P + + +D
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNV--SRLQPYLKL----RQALLE---LRPAKNV-----LID 156
Query: 349 -MTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVTGRAMELGR 407
+ GK + D ++ Q + + +F W+ L
Sbjct: 157 GVLGSGK-TWVALD------------VCLSYKV------QCKMDFKIF-WLN-----LKN 191
Query: 408 ECLKLFMLQDEGLLFLWVTGRAMELGRECLKLSLNCQLSQDVEFTWPY-LGWMSKFSLHH 466
E +L L + ++ N D + +
Sbjct: 192 CN------SPETVL--------EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 467 FFQVVYLAAMIRSIIALHNLINNK------------ITNRDAEVNIEFNFSLQHFSQVVY 514
Y ++ L N+ N K +T R +V +F
Sbjct: 238 LKSKPY----ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV---TDF---------- 280
Query: 515 LAAMIRSIIALHNLINNKITNRDAEKKEI----TKSKVEDKPQEDKK--P--------EI 560
L+A + I+ L ++ +T E K + + +D P+E P I
Sbjct: 281 LSAATTTHIS---LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 561 KVNISSS---AQASSMPASTSRITFLGYMDMAGETYGRYTH--------YVPALIMSVI- 608
+ +++ + +T + L ++ E + ++P +++S+I
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 609 --CNTRRVMFISHSGLVEVSKMVGQEVVTSKVVVHPLVLL-------------SVVDHFN 653
VM + + L + S +V ++ S + + + L S+VDH+N
Sbjct: 397 FDVIKSDVMVVVNK-LHKYS-LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 654 RMSKIGNQKRVVGVLLGCWKGKGILDVSNSFA-------VPFDEDDKDN--SVWFLDHDY 704
+ F + ++ + FLD +
Sbjct: 455 IPKTF------------DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 705 LENMYGMFKKVNAREKVVGWYHTGPKLHQNDIQINELIRRYCTNSVLVIIDAKPK 759
LE K+ R W +G L N +Q + + Y I D PK
Sbjct: 503 LEQ------KI--RHDSTAWNASGSIL--NTLQQLKFYKPY-------ICDNDPK 540
Score = 33.7 bits (76), Expect = 0.38
Identities = 44/264 (16%), Positives = 77/264 (29%), Gaps = 65/264 (24%)
Query: 1 MSDAWEEIQ------AIKSKRNSLREKLQKRKQERKDILERDGSLSPARNEEDSVDTSYQ 54
D W+ + I+S N L ++ +R + S
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP------------PSAHIPTI 390
Query: 55 TEEDAI---KLNPDLELELLEKLCDVSLTEEDAIKLN---PDLELELLEKLCDV-----S 103
+ + + ++ KL SL E+ + P + LEL KL + S
Sbjct: 391 LLS--LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 104 LV----LPITSQSLMGTLNQE--YT------HLCLINLLHKFATQKLITIN----ESK-- 145
+V +P T S Y HL I + +++ ++ E K
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 146 -DDDNQVEIVSVEHVKLLGMVNEVSKGIKRKADTDTSDYEDDEDLKKFKDN-------GD 197
D S+ + L + I D D + F
Sbjct: 509 HDSTAWNASGSILN--TLQQLKFYKPYI---CDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 198 ETDVMSL-LSKPS--IREKQVKQI 218
TD++ + L I E+ KQ+
Sbjct: 564 YTDLLRIALMAEDEAIFEEAHKQV 587
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.4 bits (164), Expect = 2e-11
Identities = 103/667 (15%), Positives = 197/667 (29%), Gaps = 236/667 (35%)
Query: 444 QLSQ-DVEFTW--PYLGWMSKFSLHHFFQ------------------VVYLAAMIRSIIA 482
LS +E P + L F L ++
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVS 69
Query: 483 LHNLINNKITNRDAEVNIEFNFSLQHFSQVVYLAAM-IRSIIALHNLINNKITNRDAEKK 541
+L+ + +V N L F YL I ++ A L+ T + K
Sbjct: 70 --SLVEPSKVGQFDQV---LNLCLTEFENC-YLEGNDIHALAA--KLLQENDT-TLVKTK 120
Query: 542 EITKSKVEDKPQEDKKPEIKVNISSSAQASSMPASTSRI--TFLG------YMD-MAGET 592
E+ K+ + + K+P K S+SA ++ +++ F G Y + + +
Sbjct: 121 ELIKNYITAR-IMAKRPFDKK--SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR-DL 176
Query: 593 YGRYTHYVPALIMSV-------ICNTRRVMFISHSG------LVEVSKMVGQEVVTSKVV 639
Y Y V LI I T + G L S ++ + S +
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI 236
Query: 640 VHPLVLLSVVDHFNRMSKI-----GNQKRVVGVLLGCWKGKGILDVSNSFAVPFDEDDKD 694
PL+ + + H+ +K+ G + + G +G++ + + A +
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH--SQGLV-TAVAIAETDSWES-- 291
Query: 695 NSVWFLDHDYLENMYGMFKKVNAREKVVGW-YHTGPKLHQNDIQINELIRRYCTNSV--L 751
F + R K + + G + ++ Y S+
Sbjct: 292 ----FFV--------------SVR-KAITVLFFIGVRCYE----------AYPNTSLPPS 322
Query: 752 VIIDAKPKELGLPTEAYRVVD------EDKIRPEREPNPR-PSANKAAIGKWKTNTTPNK 804
++ D+ G+P+ + + +D + + N P+ + I N
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQVQDYV---NKTNSHLPAGKQVEIS--LVN-GAKN 376
Query: 805 AFLCG---------RSSRGGKV--GRIRCRSHFSTTGVLSIRRIFNPIGTWTFIRIPTTT 853
+ G + R K G + R FS R+ + F +P +
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE------RK---LKFSNRF--LPVAS 425
Query: 854 WPSRAREKVVGWYHTGPKLHQ-NDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVV 912
P +H+ L +D+ +L++ + K++ +P
Sbjct: 426 -P----------FHS-HLLVPASDLINKDLVKNN--------VSFNAKDIQIP------- 458
Query: 913 DEVHDDGSPTTKTFDHVPSEIGAEEAEEVGVEHLLRDIKDTTVGSLSQRVTNQLMGLKGL 972
V+D TFD G++ LR + GS+S+R+ + +
Sbjct: 459 --VYD-------TFD------GSD----------LRVLS----GSISERIVDCI------ 483
Query: 973 NQQIKEIEKYVGQVSRYWPPFYVVVINLIDKRSVTHL--SGPGRWLLPWGWSIMMWVLVG 1030
I V W + TH+ GPG
Sbjct: 484 ------IRLPV-----KWE--------TTTQFKATHILDFGPG----------------- 507
Query: 1031 WGVLGIG 1037
G G+G
Sbjct: 508 -GASGLG 513
Score = 52.7 bits (126), Expect = 7e-07
Identities = 78/507 (15%), Positives = 147/507 (28%), Gaps = 192/507 (37%)
Query: 573 MPASTSRITFLGYMDMAGETYG--RYTHYVPALIMSVICNTRRVMFISHSGLVEVSKMVG 630
M A ++R L ++G + VP + + + F L E ++
Sbjct: 1 MDAYSTRPLTL--------SHGSLEHVLLVPTASFFI-ASQLQEQFNKI--LPEPTEGFA 49
Query: 631 QEVVTSKVVVHPLVL--LSVVDHFNRMSKIGNQKRVVGVLLGCWKGKGIL---DVSNSFA 685
+ + LV L V SK+G +V+ + L ++ L D+ ++ A
Sbjct: 50 ADDEPTTPA--ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE-NCYLEGNDI-HALA 105
Query: 686 VPFDEDDKDNSVWFLDHDYLENMY----------------GMFKKVNARE-KVV---GWY 725
+++ V + ++N +F+ V ++V G
Sbjct: 106 AKLLQENDTTLV--KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG-- 161
Query: 726 HTGPKLHQ--NDIQINELIRRYCTNSVLV--IIDAKPKELGLPTEAYRVVDEDKIRPE-- 779
G Q D EL Y T VLV +I + L +D +K+ +
Sbjct: 162 --G----QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS--ELIRTTLDAEKVFTQGL 213
Query: 780 ------REPNPRPS-------------------ANKAAIGKWKTNTTPNKAF--LCGRSS 812
P+ P A+ K TP + L G +
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK-LLGFTPGELRSYLKGATG 272
Query: 813 RGGKVGRIRCRSHFSTTGVLSIRRIFNPIGTWTFIRIPTTTWPS--RAREKVVGW-YHTG 869
G+++ I T +W S + K + + G
Sbjct: 273 HSQ--------------GLVTA----------VAIA-ETDSWESFFVSVRKAITVLFFIG 307
Query: 870 PKLHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVVDEV-HDDGSPTTKTFDH 928
+ ++ A P LP + D + +++G P+
Sbjct: 308 VRCYE----------------------AYP-NTSLPPSI--LEDSLENNEGVPS------ 336
Query: 929 VPSEIGAEEAEEVGVEHLLRDIKDTTVGSLSQRVTNQLM-GLKGLNQQIKEIEKYVGQVS 987
P M + L Q ++++ YV + +
Sbjct: 337 -P------------------------------------MLSISNLTQ--EQVQDYVNKTN 357
Query: 988 RYWPPFYVVVINLIDKRS--VTHLSGP 1012
+ P V I+L++ V +SGP
Sbjct: 358 SHLPAGKQVEISLVNGAKNLV--VSGP 382
Score = 38.1 bits (88), Expect = 0.018
Identities = 47/275 (17%), Positives = 79/275 (28%), Gaps = 105/275 (38%)
Query: 1 MSDAWEEIQAIKSKRNSLREKLQ------KRKQERKDILERDGSLSPARNEEDSVDTSYQ 54
+D+WE +R+ + R E SL P+ EDS++
Sbjct: 285 ETDSWESFFVS------VRKAITVLFFIGVRCYEAYPNT----SLPPS-ILEDSLE---N 330
Query: 55 TEED-----AIKLNPDLELELLEKLCD---VSLTEEDAIKL---N-PDLELELLEKLCDV 102
E +I +L E ++ + L +++ N
Sbjct: 331 NEGVPSPMLSIS---NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK------------ 375
Query: 103 SLVL---PITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINESKDDDNQVEI------ 153
+LV+ P QSL G L L K + +Q I
Sbjct: 376 NLVVSGPP---QSLYG----------LNLTLRKAK---------APSGLDQSRIPFSERK 413
Query: 154 ---------VSV-EHVKLLGMVNEV------SKGIKRKADT------DTSDYEDDEDLKK 191
V+ H LL +++ + A DT D DL+
Sbjct: 414 LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT---FDGSDLRV 470
Query: 192 FKDNGDETDVMSLLSKPSIR-EKQVKQIGEEILDL 225
+ E V ++ P ++ E + ILD
Sbjct: 471 LSGSISERIVDCIIRLP-VKWETTTQFKATHILDF 504
Score = 33.5 bits (76), Expect = 0.47
Identities = 40/236 (16%), Positives = 66/236 (27%), Gaps = 110/236 (46%)
Query: 12 KSKRNSLREKLQKRKQERKDILERDGSLSPAR--NEEDSVDTSYQTEEDAIKLN------ 63
K KR +RE E DG L + E + TSY + L+
Sbjct: 1680 KGKR--IRENYSAMIFETIV----DGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ 1733
Query: 64 P-----------DLELELLEKLCDV----SLTE-------------EDAIKL-------- 87
P DL+ + L SL E E +++
Sbjct: 1734 PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTM 1793
Query: 88 -------------------NPD-----LELELLEKLCD---------VSLV---LP---- 107
NP E L+ + + V +V +
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY 1853
Query: 108 ITSQSLMGTLNQEYTHL-CLINLLHKFATQK--LITINESKDDDNQVEIVSVEHVK 160
+ + G L L + N+L+ QK +I + +S +S+E V+
Sbjct: 1854 VAA----GDLRA----LDTVTNVLNFIKLQKIDIIELQKS---------LSLEEVE 1892
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 36.3 bits (83), Expect = 0.023
Identities = 13/85 (15%), Positives = 32/85 (37%), Gaps = 17/85 (20%)
Query: 6 EEIQAIKSKRNSLREKLQKR----KQERKDILERDGSLSPARNEEDSVDTSYQTE-EDAI 60
+E ++I+ R R++LQ+ K ++ E+ A+ + + + + E
Sbjct: 82 QEPESIRKWREEQRKRLQELDAASKVMEQEWREK------AKKDLEEWNQRQSEQVEKNK 135
Query: 61 KLNPDLELELLEKLCDVSLTEEDAI 85
N + ++ + D I
Sbjct: 136 INNRIADKAFYQQP------DADII 154
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated
deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens}
PDB: 3rzu_A
Length = 211
Score = 35.4 bits (81), Expect = 0.062
Identities = 22/142 (15%), Positives = 43/142 (30%), Gaps = 20/142 (14%)
Query: 637 KVVVHPLVLLSVVDHFNRMSKIGNQKRVVGVLLGCWKGKGILDVSNSFAVPFDEDDKDNS 696
VVV + + + G+L G +++ +
Sbjct: 43 HVVVPGRLCPQFLQLA--SANTARGVATCGILCGKLMR-NEFTITHVLIPKQSAGSDYCN 99
Query: 697 VWFLDHDYLENMYGMFKKVNAR-EKVVGWYHTGPK----LHQNDIQINELIRRYCTNSVL 751
EN +F + + +GW HT P L D+ + + SV
Sbjct: 100 T--------ENEEELFLIQDQQGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVA 151
Query: 752 VIIDAKPKELGLPTEAYRVVDE 773
++ K +E G +++ D
Sbjct: 152 IVCSPKFQETG----FFKLTDH 169
Score = 33.5 bits (76), Expect = 0.21
Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 14/84 (16%)
Query: 860 EKVVGWYHTGPK----LHQNDIQINELIRRYCTNSVLVIIDAKPKELG---LPTEAYRVV 912
+GW HT P L D+ + + SV ++ K +E G L +
Sbjct: 115 LITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQETGFFKLTDHGLEEI 174
Query: 913 DE-------VHDDGSPTTKTFDHV 929
H P + HV
Sbjct: 175 SSCRQKGFHPHSKDPPLFCSCSHV 198
>2znr_A AMSH-like protease; metal binding protein, alternative splicing,
hydrolase, metal-binding, metalloprotease, UBL
conjugation pathway, zinc; 1.20A {Homo sapiens} PDB:
2znv_A
Length = 178
Score = 35.1 bits (80), Expect = 0.065
Identities = 17/142 (11%), Positives = 41/142 (28%), Gaps = 20/142 (14%)
Query: 637 KVVVHPLVLLSVVDHFNRMSKIGNQKRVVGVLLGCWKGKGILDVSNSFAVPFDEDDKDNS 696
VV+ + + S G+L G +++
Sbjct: 10 CVVLPEDLCHKFLQLA--ESNTVRGIETCGILCGKLTH-NEFTITHVIVPKQSAGPDYCD 66
Query: 697 VWFLDHDYLENMYGMFKKVNAR-EKVVGWYHT----GPKLHQNDIQINELIRRYCTNSVL 751
+ ++ +F + +GW HT L D+ + + ++
Sbjct: 67 MENVEE--------LFNVQDQHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIA 118
Query: 752 VIIDAKPKELGLPTEAYRVVDE 773
++ K K+ G +R+ +
Sbjct: 119 IVCSPKHKDTG----IFRLTNA 136
Score = 32.0 bits (72), Expect = 0.55
Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 10/99 (10%)
Query: 860 EKVVGWYHT----GPKLHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVVDEV 915
+GW HT L D+ + + ++ ++ K K+ G +R+ +
Sbjct: 82 LLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHKDTG----IFRLTNAG 137
Query: 916 HDDGSPTTKTFDHVPSEIGA--EEAEEVGVEHLLRDIKD 952
+ S K H ++ + V V+ + + D
Sbjct: 138 MLEVSACKKKGFHPHTKEPRLFSICKHVLVKDIKIIVLD 176
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.066
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 539 EKKEITKSKVED--KPQE-DKKPEIKVNIS 565
EK+ + K K++ K D P + + +
Sbjct: 18 EKQAL-K-KLQASLKLYADDSAPALAIKAT 45
Score = 32.6 bits (73), Expect = 0.31
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 8/29 (27%)
Query: 974 QQIKEIEKYVGQVSRYWP---PFYVVVIN 999
Q +K+++ + Y P + I
Sbjct: 20 QALKKLQ---ASLKLYADDSAP--ALAIK 43
Score = 30.3 bits (67), Expect = 1.8
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 14/36 (38%)
Query: 7 EIQAIKSKRNSLREKLQKRKQERKDILERDGSLSPA 42
E QA+K + SL+ L D S +PA
Sbjct: 18 EKQALKKLQASLK-------------LYADDS-APA 39
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 36.0 bits (83), Expect = 0.084
Identities = 26/152 (17%), Positives = 42/152 (27%), Gaps = 51/152 (33%)
Query: 863 VGWY--HTGPKLHQNDI------QINE--LIRRYCTNSVLVIIDAKPKELGLPTEAYRVV 912
GW T + D+ I E IR +
Sbjct: 874 TGWVDSKTKEPVDDKDVKAKYETSILEHSGIRL-------------------------IE 908
Query: 913 DEVHDDGSPTTKTF--------DHVPSEIGAEEAEEVGVEHLLRDIKDTTVGSLSQRVTN 964
E+ + +P K D P E E AE+ +H D + + +
Sbjct: 909 PELFNGYNPEKKEMIQEVIVEEDLEPFEASKETAEQFKHQH--GDK--VDIFEIPETGEY 964
Query: 965 QLMGLKGLNQQIKEIEKYV----GQVSRYWPP 992
+ LKG I + ++ GQ+ W
Sbjct: 965 SVKLLKGATLYIPKALRFDRLVAGQIPTGWNA 996
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 31.8 bits (72), Expect = 0.37
Identities = 22/94 (23%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 6 EEIQAIKSKRNSLREKLQKRKQERKDILERDGSLSPARNE-----EDSVDTSYQTEEDAI 60
+E+ ++K + L+E L+K + RK++ E+ SL +N+ + D EE
Sbjct: 13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCD 72
Query: 61 KLNPDLELELLEKLCDVSLTEEDAIKLNPDLELE 94
+L +++L K+ +++ ED ++N +L +
Sbjct: 73 QLI-KNKIQLEAKVKEMNKRLEDEEEMNAELTAK 105
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 33.7 bits (77), Expect = 0.44
Identities = 35/255 (13%), Positives = 72/255 (28%), Gaps = 58/255 (22%)
Query: 6 EEIQAIKSKRNSLREKLQKRKQERKDILERDGSLSPARNEEDSVDTSYQTEEDAIKLNPD 65
E+ +++ R K+Q + DI + A +E S
Sbjct: 827 EKFAELQTIRLPADRKIQDYRSAYNDIRDWQRREKEAEKKEKSTTDWDD---------VV 877
Query: 66 LELELLEKLCDVSLTEEDAIKLNPDLELELLEKLCDVSLVLPITSQSLMGTLNQEYTHLC 125
E++LL+ ++N D L L+ + + + + + +
Sbjct: 878 FEVDLLKS-----------QEINLDYILGLIFEHNRQNKGKGEMIEEVKRLIRSSLGNRA 926
Query: 126 LINLLHKFATQKLITINESKDDDNQVEIVSVEHVKLLGMVNEVSKGIKRKADTDTSDYED 185
L+ F + N D I + E IK + +
Sbjct: 927 KEGLVVDF----IQQTNLDDLPDKASIIDAFFTFAQREQQREAEALIKE-------ENLN 975
Query: 186 DEDLKKFKDNGDETDVMSLLSKPSIREKQVKQIGEEILDLLTKP--------------TA 231
++ K++ S++ + + G E+ + L K
Sbjct: 976 EDAAKRYIRT-------------SLKREYATENGTELNETLPKLSPLNPQYKTKKQAVFQ 1022
Query: 232 KERSLAERFRSQSGN 246
K S E+F+ G
Sbjct: 1023 KIVSFIEKFKGVGGK 1037
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Salinibacter
ruber dsm 13855}
Length = 153
Score = 31.2 bits (70), Expect = 0.84
Identities = 25/154 (16%), Positives = 44/154 (28%), Gaps = 11/154 (7%)
Query: 638 VVVHPLVLLSVVDHFNRMSKIGNQKRVVGVLLGCWKGKGILDVSNSFAVPFDEDDKDNSV 697
+ P +L + H + G LLG G V+ ++
Sbjct: 1 MKTTPDILDQIRVH----GADAYPEEGCGFLLGTVTDDGDNRVAALHRATNRRSEQRTRR 56
Query: 698 WFLDHDYLENMYGMFKKVNAREKVVGWYHTGPKLHQNDIQINELIRRYCTNSVLV-IIDA 756
+ L D ++ VVG YH+ P + + + T +I +
Sbjct: 57 YELTADDYRAADAAAQEQG--LDVVGVYHSHPD---HPARPSATDLEEATFPGFTYVIVS 111
Query: 757 KPKELGLPTEAYRVV-DEDKIRPEREPNPRPSAN 789
A+ + D + E P P A
Sbjct: 112 VRDGAPEALTAWALAPDRSEFHREDIVRPDPEAP 145
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila}
Length = 185
Score = 30.8 bits (69), Expect = 1.6
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 655 MSKIGNQKRVVGVLLGCWKGKGILD 679
M + QKR+ +L C + + LD
Sbjct: 1 MVSLRLQKRLAASVLKCGQKRLWLD 25
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4
chimera; alpha-helical coiled coil, disorder, salt
links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB:
1nkn_A 3bat_A
Length = 89
Score = 29.2 bits (65), Expect = 1.9
Identities = 15/68 (22%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 6 EEIQAIKSKRNSLREKLQKRKQERKDILERDGSLSPARNE-EDSVDTSYQTEEDAIKLNP 64
EE++ + + ++E L K ++ +K++ E++ +L +N+ S+ E+ + N
Sbjct: 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNY 73
Query: 65 DLELELLE 72
LE E+
Sbjct: 74 HLENEVAR 81
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic
fragment, transferase; HET: BZC; 2.20A {Gallus gallus}
SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A
2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A*
2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A*
Length = 350
Score = 30.8 bits (69), Expect = 2.3
Identities = 39/271 (14%), Positives = 90/271 (33%), Gaps = 50/271 (18%)
Query: 61 KLNPDLELELLEKLCDVSLTEEDAIKLNPDLE---------------LELLEKLCDVSLV 105
KL ++ +L++ + DV ++ ++ DL+ +L ++ V
Sbjct: 3 KLAKPIQ-DLIKMIFDVESMKKAMVEFEIDLQKMPLGKLSKRQIQSAYSILNEVQQ--AV 59
Query: 106 LPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINESKDDDNQVEIVSVEHVKLLGMV 165
S+S + L+ + L + H F +K ++ + Q ++ ++++ + +
Sbjct: 60 SDGGSESQILDLSNRFYTL----IPHDFGMKKPPLLSNL--EYIQAKVQMLDNLLDIEVA 113
Query: 166 NEVSKGIKRKADTDTSDYEDDEDLKKFKDNGDETDVMSLLSKPS----IREKQVKQIGEE 221
+ +G D D D ++ + ++ K S I ++ VK
Sbjct: 114 YSLLRGGNEDGDKDPIDINYEKLRTD----------IKVVDKDSEEAKIIKQYVKNTHAA 163
Query: 222 ILDLLT-KPTAKER----SLAERFRSQSGNQVQEYCSHGTRAECLRMKDTPNICTK-LHF 275
+ K R ++R++ ++ HG+R I ++ L
Sbjct: 164 THNAYDLKVVEIFRIEREGESQRYKPFKQLHNRQLLWHGSRTTNF-----AGILSQGLRI 218
Query: 276 RKIIQCHTDESLGDCSFLNTCFHMDSCKYVH 306
T G + S Y H
Sbjct: 219 APPEAPVTGYMFGKGIYFADMVSK-SANYCH 248
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural
genomics, center for structural genomics of infectious
diseases, csgid; 2.10A {Bacillus anthracis}
Length = 108
Score = 28.6 bits (65), Expect = 3.2
Identities = 8/25 (32%), Positives = 9/25 (36%), Gaps = 6/25 (24%)
Query: 361 DPPWDIHMELPYGTMSDDEMRQLGI 385
+PPW MS LGI
Sbjct: 88 NPPWSKER------MSRMAKIALGI 106
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta
fold,structural genomics joint center for structural
genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2
PDB: 1wcj_A
Length = 103
Score = 28.6 bits (65), Expect = 3.5
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 6/25 (24%)
Query: 361 DPPWDIHMELPYGTMSDDEMRQLGI 385
DPPW MS + + G+
Sbjct: 85 DPPWTPER------MSPELREKFGV 103
>2kq9_A DNAK suppressor protein; zinc binding protein, structural
genomics, PSI-2, protein ST initiative; NMR
{Agrobacterium tumefaciens str}
Length = 112
Score = 27.8 bits (62), Expect = 7.0
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 18 LREKLQKRKQERKDILERDGSLSPARNEEDSVDTSYQTEEDAIKL-NPDLELELLEK 73
+ L+ R++E L + + D D + + D + + + L
Sbjct: 12 YEKILRDRQRELYRRLHKIEADFEEPRNPDDEDRASERSNDEVLDELGQVGQDELRA 68
>1oao_C CODH, carbon monoxide dehydrogenase/acetyl-COA synthase alpha;
oxidoreductase-transferase complex, electron transfer,
oxidoreductase; 1.90A {Moorella thermoacetica} SCOP:
e.26.1.3 PDB: 2z8y_M 3i01_M 3i04_M 1mjg_M 1ru3_A 3git_A
3s2x_A
Length = 729
Score = 29.1 bits (65), Expect = 8.7
Identities = 20/141 (14%), Positives = 48/141 (34%), Gaps = 4/141 (2%)
Query: 305 VHYEVDGAKIKGISDISD--EGNKSLLEKTKLYPPQWIQCDLRYLDMTVLGKFAVIMADP 362
V G ++K + D+ ++ + + + + + ++ + P
Sbjct: 64 VIRCFSGEEVKKLGDLPPILNRKRAQVSPVLNFENARLAGEATWYAAEIIEALRYLKYKP 123
Query: 363 PWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVTGRAMELGRECLKLFM-LQDEGLL 421
+ G + D +R+ GI + + GRA + + K+ L G +
Sbjct: 124 DEPLLPPPWTGFIGDPVVRRFGIKMVDWTIPGEAIILGRAKD-SKALAKIVKELMGMGFM 182
Query: 422 FLWVTGRAMELGRECLKLSLN 442
+L E +KL ++
Sbjct: 183 LFICDEAVEQLLEENVKLGID 203
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Length = 155
Score = 28.0 bits (62), Expect = 8.8
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 86 KLNPDLELEL---LEKLCDVSLVLPITSQSLMGTLNQEYTHLC-LINLLHKFATQKLITI 141
+ + DLE L + C + P + ++ T LC LIN L+ + I
Sbjct: 13 QYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKI 72
Query: 142 NESKDDDNQVE 152
S Q+E
Sbjct: 73 QASTMAFKQME 83
>3sks_A Putative oligoendopeptidase F; structural genomics, center for
structural genomics of infec diseases, csgid, protease,
hydrolase; 2.05A {Bacillus anthracis}
Length = 567
Score = 28.9 bits (65), Expect = 9.4
Identities = 25/157 (15%), Positives = 47/157 (29%), Gaps = 31/157 (19%)
Query: 6 EEIQAIKSKRNSLREKLQ------------KRKQERKDILERDGSLSPARNEEDSVDTSY 53
I+ +K K EK E ++ G+L R+ D+ D Y
Sbjct: 14 PNIEELKEKFTVALEKFDNAKTVEEQKQVIHSINEIRNDFGTMGNLCYIRHSVDTTDAFY 73
Query: 54 QTEEDAI-KLNPDL---ELELLEKLCDVSLTEE----------DAIKLNPDLELELLEKL 99
+ E+D + +P + + L EE + + + + K
Sbjct: 74 KEEQDFFDEFSPVVQGYGTKYYNALIHSPFREELEAYYGKQLFALAECDLKTYSDEVVKD 133
Query: 100 CDVSLVLPITSQSLMGTL-----NQEYTHLCLINLLH 131
+ L L+ + +E T LI +
Sbjct: 134 LQLENKLSSQYTQLLASAKIDFAGEERTLSQLIPFMQ 170
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H
helix, HHH motif, three helix bundle, methanopyrus
kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP:
a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB:
2csd_A
Length = 519
Score = 28.9 bits (64), Expect = 9.4
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 15/107 (14%)
Query: 11 IKSKRNSLREKLQKR-------KQERKDILERDGSLSPARNEEDSVD----TSYQTEEDA 59
++ KR+ +R L++R Q+R I E D +L AR + S+ T Y+T +D
Sbjct: 279 VEHKRDIMRRYLEQRIVECALKLQDRYGIRE-DVALCLARAFDGSISMIATTPYRTLKDV 337
Query: 60 IKLNPDLELELLEKLCDVSLTEEDAIKLNPDLELELLEKLCDVSLVL 106
PDL LE + + T D L+PD EL+E ++ +L
Sbjct: 338 C---PDLTLEEAKSVNRTLATLIDEHGLSPDAADELIEHFESIAGIL 381
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.405
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,314,141
Number of extensions: 1014772
Number of successful extensions: 2139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2113
Number of HSP's successfully gapped: 51
Length of query: 1061
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 958
Effective length of database: 3,825,930
Effective search space: 3665240940
Effective search space used: 3665240940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)