RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17828
(1061 letters)
>d1uaza_ f.13.1.1 (A:) Archaerhodopsin-1 {Archaeon Halobacterium sp.
[TaxId: 2243]}
Length = 236
Score = 32.3 bits (73), Expect = 0.25
Identities = 9/50 (18%), Positives = 16/50 (32%)
Query: 989 YWPPFYVVVINLIDKRSVTHLSGPGRWLLPWGWSIMMWVLVGWGVLGIGW 1038
+ +VV+ + G + ++ VLV W I W
Sbjct: 146 FSTICMIVVLYFLATSLRAAAKERGPEVASTFNTLTALVLVLWTAYPILW 195
>d1ew3a_ b.60.1.1 (A:) Lipocalin allergen {Horse (Equus caballus),
equ c 1 [TaxId: 9796]}
Length = 159
Score = 29.8 bits (66), Expect = 1.1
Identities = 9/104 (8%), Positives = 27/104 (25%), Gaps = 13/104 (12%)
Query: 671 CWKGKGILDVSNSFAVPFDEDDKDNSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGPK 730
C + + D + V D N + + E++ + + +
Sbjct: 61 CTEFPMVFDKTEEDGVYSLNYDGYNVFRISEFENDEHIILYLVNFDKDRPFQLFEFYARE 120
Query: 731 LHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVVDED 774
+ E ++ ++ G+ E + +
Sbjct: 121 PDVSPEIKEEFVKIV-------------QKRGIVKENIIDLTKI 151
>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon Natronobacterium
pharaonis [TaxId: 2257]}
Length = 225
Score = 29.3 bits (65), Expect = 1.9
Identities = 5/49 (10%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 990 WPPFYVVVINLIDKRSVTHLSGPGRWLLPWGWSIMMWVLVGWGVLGIGW 1038
F +V L+ + + + + ++ W + W
Sbjct: 131 AVAFLGLVYYLVGPMTESASQRSSG-IKSLYVRLRNLTVILWAIYPFIW 178
>d1rxta1 d.108.1.2 (A:78-218) N-myristoyl transferase, NMT {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 28.6 bits (64), Expect = 2.0
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 689 DEDDKDNSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGPKLHQNDIQINELIRRYCTN 748
D L+ +Y+E+ MF + + + + W P +R +
Sbjct: 11 DRGVLKELYTLLNENYVEDDDNMF-RFDYSPEFLLWALRPPGWLPQWHCG---VRVVSSR 66
Query: 749 SVLVIIDAKPKEL 761
++ I A P +
Sbjct: 67 KLVGFISAIPANI 79
>d1epba_ b.60.1.1 (A:) Retinoic acid-binding protein {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 160
Score = 28.6 bits (63), Expect = 2.4
Identities = 14/108 (12%), Positives = 22/108 (20%), Gaps = 18/108 (16%)
Query: 670 GCWKGKGILDVSNS---FAVPFDEDDKDNSVWFLDHDYLENMYGMFKKVNAREKVVGWYH 726
C K + F V K+ V DYL + A
Sbjct: 57 HCVLEKVTATEGDGPAKFQVTRLSGKKE--VVVEATDYLTYAIIDITSLVAGAVHRTMKL 114
Query: 727 TGPKLHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVVDED 774
L N + + + G ++ D
Sbjct: 115 YSRSLDDNGEALYNFRKIT-------------SDHGFSETDLYILKHD 149
>d1m0ka_ f.13.1.1 (A:) Bacteriorhodopsin {Archaeon Halobacterium
salinarum [TaxId: 2242]}
Length = 227
Score = 28.9 bits (64), Expect = 2.5
Identities = 3/46 (6%), Positives = 13/46 (28%)
Query: 993 FYVVVINLIDKRSVTHLSGPGRWLLPWGWSIMMWVLVGWGVLGIGW 1038
+ ++ ++ + + + +V W + W
Sbjct: 140 AMLYILYVLFFGFTSKAESMRPEVASTFKVLRNVTVVLWSAYPVVW 185
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId:
9913]}
Length = 234
Score = 28.5 bits (63), Expect = 3.2
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 1010 SGPGRWL---LPWGWSIMMWVLVGWGVLGIGWNSA 1041
GP L L +G ++ V + G N A
Sbjct: 31 PGPLHVLQVALAFGLALATLVQAVGHISGAHVNPA 65
>d2o4ta1 a.69.4.1 (A:16-105) Uncharacterized protein BH3976
{Bacillus halodurans [TaxId: 86665]}
Length = 90
Score = 27.0 bits (60), Expect = 3.5
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
Query: 204 LLSKPSIREKQVKQIGEEILDLLTKPTAKERSLAERFRSQSGNQVQEYC 252
L + + + EIL + A + + + G V +C
Sbjct: 23 LFKVGPVELNEGIGLLSEILGFFEEGAAAGKGVLDVT----GTDVAAFC 67
>d2o3la1 a.69.4.1 (A:14-95) Hypothetical protein BCE3448 {Bacillus
cereus [TaxId: 1396]}
Length = 82
Score = 26.6 bits (59), Expect = 4.1
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 204 LLSKPSIREKQVKQIGEEILDLLTKPTAKERSLAERFRSQSGNQVQEYCS 253
+ + + + I E++DL A+ R + + G V +
Sbjct: 27 MWNFSAGNGMDMLHIQYELIDLFEAGAAEGRQVLDIT----GEDVASFAD 72
>d1jzua_ b.60.1.1 (A:) Lipocalin q83 {Common quail (Coturnix
coturnix) [TaxId: 9091]}
Length = 157
Score = 27.9 bits (61), Expect = 4.4
Identities = 10/104 (9%), Positives = 22/104 (21%), Gaps = 13/104 (12%)
Query: 671 CWKGKGILDVSNSFAVPFDEDDKDNSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGPK 730
C K + ++ + ++ V LD DY +V +
Sbjct: 59 CRKWETTFKKTSDDGEVYYSEEAKKKVEVLDTDYKSYAVIYATRVKDGRTLHMMRLYSRS 118
Query: 731 LHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVVDED 774
+ + E E ++
Sbjct: 119 PEVSPAATAIFRKLA-------------GERNYTDEMVAMLPRQ 149
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 96
Score = 26.6 bits (59), Expect = 5.8
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 540 KKEITKSKVEDKPQEDKKPEIKV 562
KK++ +S + + +E K +
Sbjct: 73 KKKLEESNLTEYMKEKIKIRMPT 95
>d1beba_ b.60.1.1 (A:) beta-Lactoglobulin {Cow (Bos taurus) [TaxId:
9913]}
Length = 156
Score = 27.2 bits (59), Expect = 6.4
Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 13/104 (12%)
Query: 670 GCWKGKGILDVSNSFAVPFDEDDKDNSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGP 729
C + K I + + AV + +N V LD DY + + + E+ +
Sbjct: 61 ECAQKKIIAEKTKIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLVCQCLVR 120
Query: 730 KLHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVVDE 773
+D + + + K L + +
Sbjct: 121 TPEVDDEALEKFDKAL-------------KALPMHIRLSFNPTQ 151
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 26.7 bits (59), Expect = 7.9
Identities = 8/61 (13%), Positives = 29/61 (47%)
Query: 1 MSDAWEEIQAIKSKRNSLREKLQKRKQERKDILERDGSLSPARNEEDSVDTSYQTEEDAI 60
M + +E+++ I+ + + E +++ K++ IL + E + + + + + +
Sbjct: 5 MDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKV 64
Query: 61 K 61
+
Sbjct: 65 R 65
>d1r17a2 b.2.3.4 (A:425-596) Fibrinogen-binding adhesin SdrG
{Staphylococcus epidermidis [TaxId: 1282]}
Length = 172
Score = 27.1 bits (60), Expect = 8.1
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 14/86 (16%)
Query: 118 NQEYTHLCLINLLHKFATQKLITINESKD-----DDNQVEIVSVEHVKLLGMVNEVSKGI 172
N IN L A + + I+ + D D+ I + + + S I
Sbjct: 22 NHTVEQTIYINPLRYSAKETNVNISGNGDEGSTIIDDSTIIKVYKVGDNQNLPD--SNRI 79
Query: 173 KRKADTDTSDYED--DEDLKKFKDNG 196
D S+YED ++D + +N
Sbjct: 80 -----YDYSEYEDVTNDDYAQLGNNN 100
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus
thermophilus [TaxId: 274]}
Length = 86
Score = 25.8 bits (57), Expect = 8.2
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 130 LHKFATQKLITINESKDDDNQVEIVSVEHV 159
+ K + +IT+ ESK + +++ V V +
Sbjct: 27 MEKVGKEGIITVEESKSLETELKFVGVAVI 56
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.405
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,009,337
Number of extensions: 196102
Number of successful extensions: 527
Number of sequences better than 10.0: 1
Number of HSP's gapped: 527
Number of HSP's successfully gapped: 21
Length of query: 1061
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 966
Effective length of database: 1,103,246
Effective search space: 1065735636
Effective search space used: 1065735636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.4 bits)