BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17832
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 77/105 (73%), Gaps = 2/105 (1%)
Query: 56 STSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDV 115
ST+F I D +F+ +V + TPV+VDF A+WC PCK++ P LE +V + +GKV +AKVD+
Sbjct: 12 STTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDI 71
Query: 116 DLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFV 160
D TDLA++Y+VS+VP ++ MK+G D+FVG + ++LEAF+
Sbjct: 72 DDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDE--DQLEAFL 114
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
Query: 56 STSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDV 115
S + ++TD F V ++ PV+VDF+A WC PCK++AP LE I + +AK+DV
Sbjct: 7 SATIKVTDA-SFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDV 65
Query: 116 DLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGF--QKSNLEELEAFVTN 162
D + A ++QV S+P LI KDG+ R VG + + L EL V N
Sbjct: 66 DTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPN 114
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
Query: 56 STSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDV 115
S + ++TD F V ++ PV+VDF+A WC PCK++AP LE I + +AK+DV
Sbjct: 12 SATIKVTDA-SFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDV 70
Query: 116 DLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQK--SNLEELEAFVTN 162
D + A ++QV S+P LI KDG+ R VG + + L EL V N
Sbjct: 71 DTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPN 119
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 61/98 (62%), Gaps = 4/98 (4%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
++TD +F++KV+ +VDF+A WC PCK++AP LE + GK + K+DVD
Sbjct: 8 KVTDA-DFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENP 64
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEEL 156
A Y+V S+P LI KDG+ D+ VGFQ K NL E+
Sbjct: 65 STAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEV 102
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 52 AEAPSTSFQITDQKEFEAKVKQASTPVIV-DFFAKWCDPCKLMAPCLEAIVERMNGKVQL 110
A A + +Q+ D+ + + ++ +AS ++V DFFA WC PCK+++P L + + V +
Sbjct: 1 AAAAAMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVV 60
Query: 111 AKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEEL 156
KVDVD D+AM+Y +SS+P + +K+G + + F G LE++
Sbjct: 61 LKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDV 106
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
++TD +F++KV+ +VDF+A WC CK++AP LE + GK + K+DVD
Sbjct: 7 KVTDA-DFDSKVESGVQ--LVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENP 63
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEEL 156
A Y+V S+P LI KDG+ D+ VGFQ K NL E+
Sbjct: 64 STAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEV 101
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
++TD +F++KV+ +VDF+A WC CK++AP LE + GK + K+DVD
Sbjct: 8 KVTDA-DFDSKVESGVQ--LVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENP 64
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEEL 156
A Y+V S+P LI KDG+ D+ VGFQ K NL E+
Sbjct: 65 STAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEV 102
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Query: 56 STSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDV 115
S + ++TD F V ++ PV+VDF+A WC P K++AP LE I + +AK+DV
Sbjct: 9 SATIKVTDA-SFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDV 67
Query: 116 DLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQK--SNLEELEAFVTN 162
D + A ++QV S+P LI KDG+ R VG + + L EL V N
Sbjct: 68 DTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPN 116
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 62/99 (62%), Gaps = 2/99 (2%)
Query: 59 FQITDQKEFEAKVKQASTP-VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDL 117
+Q+ DQ++F ++ +A V++DF+A WC PCK++AP LE + + M+ V L KVDVD
Sbjct: 3 YQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFL-KVDVDE 61
Query: 118 MTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEEL 156
D+A D Q++ +P + MK+G++ D G L EL
Sbjct: 62 CEDIAQDNQIACMPTFLFMKNGQKLDSLSGANYDKLLEL 100
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
Query: 59 FQITDQKEFEAKVKQASTPVIV-DFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDL 117
+Q+ D+ + + ++ +AS ++V DFFA WC PCK+++P L + + V + KVDVD
Sbjct: 3 YQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE 62
Query: 118 MTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEEL 156
D+AM+Y +SS+P + +K+G + + F G LE++
Sbjct: 63 CEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDV 101
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 64/99 (64%), Gaps = 4/99 (4%)
Query: 67 FEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQ 126
F+ V +AS V+VDF+A+WC PCK++ P L I + GKV +AKV++D + YQ
Sbjct: 12 FDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQ 71
Query: 127 VSSVPVLIRMKDGREQDRFVG-FQKSNLEELEAFVTNAE 164
V S+P L+ ++DG+ D+ VG KS +L+A+V +A+
Sbjct: 72 VRSIPTLMLVRDGKVIDKKVGALPKS---QLKAWVESAQ 107
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 58/95 (61%), Gaps = 4/95 (4%)
Query: 63 DQKEFEA---KVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
++ EF+A K K+A VI+DF A WC PC+ +AP ++ G V L KVDVD +
Sbjct: 21 NKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFL-KVDVDELK 79
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLE 154
++A Y V ++P + +KDG E D+ VG +K +L+
Sbjct: 80 EVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQ 114
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMK 137
++VDFFA+WC PC+ +AP +EA+ + + +V+ AKVDVD + A Y V+++P + +K
Sbjct: 22 IVVDFFAQWCGPCRNIAPKVEALAKEI-PEVEFAKVDVDQNEEAAAKYSVTAMPTFVFIK 80
Query: 138 DGREQDRFVGFQKSNLEE 155
DG+E DRF G ++ L E
Sbjct: 81 DGKEVDRFSGANETKLRE 98
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 73 QASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPV 132
Q PV+VDF+A WC PC++MAP LE E KV +AK++VD + + + S+P
Sbjct: 15 QGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPT 74
Query: 133 LIRMKDGREQDRFVGFQKSNLEELEA 158
LI K GR + +G+Q E+LEA
Sbjct: 75 LILFKGGRPVKQLIGYQPK--EQLEA 98
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 73 QASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPV 132
Q PV+VDF+A WC PC++MAP LE E KV +AK++VD + + + S+P
Sbjct: 15 QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPT 74
Query: 133 LIRMKDGREQDRFVGFQKSNLEELEA 158
LI K GR + +G+Q E+LEA
Sbjct: 75 LILFKGGRPVKQLIGYQPK--EQLEA 98
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
++TD +F++KV+ +VDF+A C PCK++AP LE + GK + K+DVD
Sbjct: 7 KVTDA-DFDSKVESGVQ--LVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENP 63
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEEL 156
A Y+V S+P LI KDG+ D+ VGFQ K NL E+
Sbjct: 64 STAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEV 101
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
Q+ E+++ + V+VDFFA WC PCK++AP +E E+ + K+DVD ++
Sbjct: 4 QLKSASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYS-DAAFYKLDVDEVS 62
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVG 147
D+A +VSS+P LI K G+E R VG
Sbjct: 63 DVAQKAEVSSMPTLIFYKGGKEVTRVVG 90
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
Q+ E+++ + V+VDFFA WC PCK++AP +E E+ + K+DVD ++
Sbjct: 11 QLKSASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYS-DAAFYKLDVDEVS 69
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVG 147
D+A +VSS+P LI K G+E R VG
Sbjct: 70 DVAQKAEVSSMPTLIFYKGGKEVTRVVG 97
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
++TDQ F+ + Q V+VDF+A+WC PC+ +AP LE I + GK+ +AK+DVD
Sbjct: 5 IEVTDQN-FDETLGQHPL-VLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDEN 62
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVGFQ 149
A Y+V S+P +I KDG+ + VG Q
Sbjct: 63 PKTAXRYRVXSIPTVILFKDGQPVEVLVGAQ 93
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
++TDQ F+ + Q V+VDF+A+WC PC+ +AP LE I + GK+ +AK+DVD
Sbjct: 4 IEVTDQN-FDETLGQHPL-VLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDEN 61
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVGFQ 149
A Y+V S+P +I KDG+ + VG Q
Sbjct: 62 PKTAXRYRVXSIPTVILFKDGQPVEVLVGAQ 92
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
++TD +F++KV+ +VDF+A WC K++AP LE + GK + K+DVD
Sbjct: 8 KVTDA-DFDSKVESGVQ--LVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDENP 64
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEEL 156
A Y+V S+P LI KDG+ D+ VGFQ K NL E+
Sbjct: 65 STAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEV 102
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 59/96 (61%), Gaps = 4/96 (4%)
Query: 62 TDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDL 121
TDQ F A+ + V+ DF+A WC PCK++AP LE + + M K+++ K+DVD +
Sbjct: 7 TDQS-FSAETSEGV--VLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQET 63
Query: 122 AMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEEL 156
A Y V S+P L+ +KDG + VGF+ K L+EL
Sbjct: 64 AGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQEL 99
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 73 QASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPV 132
Q PV+VDF+A WC PC++MAP LE E KV +AK++VD + + + S+P
Sbjct: 15 QGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPT 74
Query: 133 LIRMKDGREQDRFVGFQKSNLEELEA 158
LI K G + +G+Q E+LEA
Sbjct: 75 LILFKGGEPVKQLIGYQPK--EQLEA 98
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 73 QASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPV 132
Q PV+VDF+A WC PC++MAP LE E KV +AK++VD + + + S+P
Sbjct: 15 QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPT 74
Query: 133 LIRMKDGREQDRFVGFQKSNLEELEA 158
LI K G + +G+Q E+LEA
Sbjct: 75 LILFKGGEPVKQLIGYQPK--EQLEA 98
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 62 TDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDL 121
+ KEF V ++ PV+VDF+A WC PCKL+AP ++ + + +GK+ + K++ D +
Sbjct: 7 SSWKEF---VLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGI 63
Query: 122 AMDYQVSSVPVLIRMKDGREQDRFVG 147
A Y + S+P ++ K+G ++ +G
Sbjct: 64 ATQYNIRSIPTVLFFKNGERKESIIG 89
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 62 TDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDL 121
+ KEF V ++ PV+VDF+A WC PCKL+AP ++ + + +GK+ + K++ D +
Sbjct: 8 SSWKEF---VLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGI 64
Query: 122 AMDYQVSSVPVLIRMKDGREQDRFVG 147
A Y + S+P ++ K+G ++ +G
Sbjct: 65 ATQYNIRSIPTVLFFKNGERKESIIG 90
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
Q+ E+++ + V+VDFFA WC P K++AP +E E+ + K+DVD ++
Sbjct: 4 QLKSASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYS-DAAFYKLDVDEVS 62
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVG 147
D+A +VSS+P LI K G+E R VG
Sbjct: 63 DVAQKAEVSSMPTLIFYKGGKEVTRVVG 90
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
Q+ E+++ + V+VDFFA WC P K++AP +E E+ + K+DVD ++
Sbjct: 12 QLKSASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYS-DAAFYKLDVDEVS 70
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVG 147
D+A +VSS+P LI K G+E R VG
Sbjct: 71 DVAQKAEVSSMPTLIFYKGGKEVTRVVG 98
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 57 TSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVD 116
+ ++TD+ FE +V ++ PV+VDF+A WC PC+++AP +E + + GKV++ KV+VD
Sbjct: 2 SVIEVTDEN-FEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVD 60
Query: 117 LMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQ 149
+ A Y + S+P L+ K+G+ DR VG Q
Sbjct: 61 ENPNTAAQYGIRSIPTLLLFKNGQVVDRLVGAQ 93
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
+TD F+ V +A ++VDF+A+WC PCK++AP L+ I E GK+ +AK+++D
Sbjct: 5 IHLTDD-SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQN 63
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEEL 156
A Y + +P L+ K+G VG K L+E
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
+TD FE V +A ++VDF+A+WC PCK++AP L+ I + GK+ +AK+++D
Sbjct: 5 IHLTDD-SFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEEL 156
A Y + +P L+ K+G VG K L+E
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
+TD F+ V +A ++VDF+A+WC PCK++AP LE I + GK+ +AK+++D
Sbjct: 5 IHLTDD-SFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQN 63
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEEL 156
A Y + +P L+ K+G VG K L+E
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
+TD F+ V +A ++VDF+A+WC PCK++AP L+ I + GK+ +AK+++D
Sbjct: 5 IHLTDD-SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEEL 156
A Y + S+P L+ K+G VG K L+E
Sbjct: 64 PGTAPKYGIRSIPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 58/96 (60%), Gaps = 4/96 (4%)
Query: 62 TDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDL 121
TDQ F A+ + V+ DF+A WC P K++AP LE + + M K+++ K+DVD +
Sbjct: 7 TDQS-FSAETSEGV--VLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQET 63
Query: 122 AMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEEL 156
A Y V S+P L+ +KDG + VGF+ K L+EL
Sbjct: 64 AGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQEL 99
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
+TD+ F+ V +A ++VDF+A+WC PCK++AP L+ I + GK+ +AK+++D
Sbjct: 5 IHLTDE-SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEEL 156
A Y + +P L+ K+G VG K L+E
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 58/96 (60%), Gaps = 4/96 (4%)
Query: 62 TDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDL 121
TDQ F A+ + V+ DF+A WC P K++AP LE + + M K+++ K+DVD +
Sbjct: 7 TDQS-FSAETSEGV--VLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQET 63
Query: 122 AMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEEL 156
A Y V S+P L+ +KDG + VGF+ K L+EL
Sbjct: 64 AGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQEL 99
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 63 DQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLA 122
D+K F +V A +VDFFA WC PC+L++P LE + G++++ KV+VD LA
Sbjct: 39 DEKGFAQEVAGAPL-TLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLA 97
Query: 123 MDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEE 155
Y V SVP L+ + G +VG + E
Sbjct: 98 ARYGVRSVPTLVLFRRGAPVATWVGASPRRVLE 130
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
+TD F+ V +A ++VDF+A+WC PCK++AP L+ I + GK+ +AK+++D
Sbjct: 5 IHVTDD-SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEEL 156
A Y + +P L+ K+G VG K L+E
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
+TD F+ V +A ++VDF+A+WC PCK++AP L+ I + GK+ +AK+++D
Sbjct: 5 IHLTDD-SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEEL 156
A Y + +P L+ K+G VG K L+E
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 69 AKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVS 128
A+ ++ P++VDF+A WC PC+ MAP +A + G+V+LAK+D +A +++
Sbjct: 58 ARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQ 117
Query: 129 SVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTN 162
+P I GRE R G + ++ EL FV
Sbjct: 118 GIPAFILFHKGRELARAAGARPAS--ELVGFVRG 149
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
+TD F+ V +A ++VDF+A+WC PCK++AP L+ I + GK+ +AK+++D
Sbjct: 5 IHLTDD-SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEEL 156
A Y + +P L+ K+G VG K L+E
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
+TD F+ V +A ++VDF+A+WC PCK++AP L+ I + GK+ +AK+++D
Sbjct: 5 IHLTDD-SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEEL 156
A Y + +P L+ K+G VG K L+E
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
+TD F+ V +A ++VDF+A+WC PCK++AP L+ I + GK+ +AK+++D
Sbjct: 5 IHLTDD-SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQN 63
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEEL 156
A Y + +P L+ K+G VG K L+E
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 64 QKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAM 123
+ F+ V +A ++VDF+A+WC PCK++AP L+ I + GK+ +AK+++D A
Sbjct: 9 EDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP 68
Query: 124 DYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEEL 156
Y + +P L+ K+G VG K L+E
Sbjct: 69 KYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
+TD F+ V +A ++VDF+A+WC PCK++AP L+ I + GK+ +AK+++D
Sbjct: 5 IHLTDD-SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEEL 156
A Y + +P L+ K+G VG K L+E
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGDVAATKVGALSKGQLKEF 102
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
+TD F+ V +A ++VDF+A+WC PCK++AP L+ I + GK+ +AK+++D
Sbjct: 5 IHLTDD-SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQN 63
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEEL 156
A Y + +P L+ K+G VG K L+E
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
+TD F+ V +A ++VDF+A+WC PCK++AP L+ I + GK+ +AK+++D
Sbjct: 15 IHLTDDS-FDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 73
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEEL 156
A Y + +P L+ K+G VG K L+E
Sbjct: 74 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 112
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
+TD F+ V +A ++VDF+A+WC PCK++AP L+ I + GK+ +AK+++D
Sbjct: 6 IHLTDD-SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 64
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEEL 156
A Y + P L+ K+G VG K L+E
Sbjct: 65 PGTAPKYGIRGTPTLLLFKNGEVAATKVGALSKGQLKEF 103
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 62 TDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDL 121
+ KEF V ++ PV+VDF+A WC P KL+AP ++ + + +GK+ + K++ D +
Sbjct: 8 SSWKEF---VLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEAPGI 64
Query: 122 AMDYQVSSVPVLIRMKDGREQDRFVG 147
A Y + S+P ++ K+G ++ +G
Sbjct: 65 ATQYNIRSIPTVLFFKNGERKESIIG 90
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
+TD F+ V +A ++VDF+A+WC PCK++AP L+ I + GK+ +AK+++D
Sbjct: 5 IHLTDD-SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEEL 156
A Y + +P L+ K+G VG K L+E
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAACKVGALSKGQLKEF 102
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
+TD FE V + PV+VDF+A WC PC+ +AP LEAI K+++ K+++D
Sbjct: 9 HVTDD-SFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENP 67
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGF--QKSNLEELEAFVTN 162
A Y V S+P L + G VG + + + +LE F+ +
Sbjct: 68 GTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFIAD 112
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
+TD F+ V +A ++VDF+A+WC PC+++AP L+ I + GK+ +AK+++D
Sbjct: 5 IHLTDD-SFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEEL 156
A Y + +P L+ K+G VG K L+E
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 4/94 (4%)
Query: 64 QKEFE---AKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTD 120
++EF+ A K VI+DF A WC PC+++AP ++ G + L KVDVD + D
Sbjct: 14 KQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFL-KVDVDELKD 72
Query: 121 LAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLE 154
+A Y V ++P + +KDG + D VG +K ++
Sbjct: 73 VAEAYNVEAMPTFLFIKDGEKVDSVVGGRKDDIH 106
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
+TD F+ V +A ++VDF+A+WC PCK++AP L+ I + GK+ +AK+++D
Sbjct: 5 IHLTDD-SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 119 TDLAMDYQVSSVPVLIRMKDG 139
A Y + +P L+ K+G
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
+TD F+ V +A ++VDF+A+WC PCKL+A L+ I + GK+ +AK+++D
Sbjct: 5 IHLTDD-SFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQN 63
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEEL 156
A Y + +P L+ K+G VG K L+E
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
+TD F+ V +A ++VDF+A+WC PCK++AP L+ I + GK+ +AK+++D
Sbjct: 5 IHLTDD-SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 119 TDLAMDYQVSSVPVLIRMKDG 139
A Y + +P L+ K+G
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
Q EF++ + Q V+VDF+A WC PCK++AP +E E+ + K+DVD +
Sbjct: 4 QFKTASEFDSAIAQDKL-VVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELG 61
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVG 147
D+A +VS++P L+ K+G+E + VG
Sbjct: 62 DVAQKNEVSAMPTLLLFKNGKEVAKVVG 89
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
Q EF++ + Q V+VDF+A WC PCK++AP +E E+ + K+DVD +
Sbjct: 10 QFKTASEFDSAIAQDKL-VVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELG 67
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVG 147
D+A +VS++P L+ K+G+E + VG
Sbjct: 68 DVAQKNEVSAMPTLLLFKNGKEVAKVVG 95
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 77 PVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVL 133
P IVDF+A WC PCK++AP LE + + GK+ + KV+VD +LA D+ + S+P +
Sbjct: 53 PAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTI 109
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
+TD F+ V +A ++VDF+A+WC P K++AP L+ I + GK+ +AK+++D
Sbjct: 25 IHLTDD-SFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQN 83
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEEL 156
A Y + +P L+ K+G VG K L+E
Sbjct: 84 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 122
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 51/81 (62%)
Query: 67 FEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQ 126
F+ V ++S PV+VDF+A WC PC+++AP ++ I K++ K++ D ++A +Y
Sbjct: 11 FKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYG 70
Query: 127 VSSVPVLIRMKDGREQDRFVG 147
+ S+P ++ K G++ + +G
Sbjct: 71 IRSIPTIMVFKGGKKCETIIG 91
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
+TD F+ V +A ++VDF+A+WC CK++AP L+ I + GK+ +AK+++D
Sbjct: 5 IHLTDD-SFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEEL 156
A Y + +P L+ K+G VG K L+E
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
+TD F+ V +A ++VDF+A+WC P K++AP L+ I + GK+ +AK+++D
Sbjct: 5 IHLTDD-SFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEEL 156
A Y + +P L+ K+G VG K L+E
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%)
Query: 77 PVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVL 133
P IVDF+A WC PCK++AP LE + + GK+ + KV+VD +LA D+ + +P +
Sbjct: 53 PAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQGIPTI 109
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 56 STSFQITDQKEFEAKVKQASTP--VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKV 113
S ++TD FE+++ + ++V+FFA WC CK +AP EA R+ G V LAKV
Sbjct: 1 SDVLELTDDN-FESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKV 59
Query: 114 DVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVG 147
D T+ Y VS P L +DG E + G
Sbjct: 60 DCTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDG 93
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 55 PSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKV 113
P S Q+ + +V V++DF+A WC PCK++ P E I + G KV KV
Sbjct: 13 PRGSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKV 72
Query: 114 DVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLE 154
DVD + +A + + ++P + K+G++ D VG S L+
Sbjct: 73 DVDEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGADPSKLQ 113
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 64 QKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAM 123
KE K K + ++VDF A WC PCK++AP + ++ V KVDVD + +A
Sbjct: 15 WKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVDELKAVAE 73
Query: 124 DYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEA 158
++ V ++P I +KDG+ D+ VG K L L A
Sbjct: 74 EWNVEAMPTFIFLKDGKLVDKTVGADKDGLPTLVA 108
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
+TD F+ + +A ++VDF+A+WC PCK++AP L+ I + GK+ +AK+++D
Sbjct: 5 IHLTDD-SFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEEL 156
A Y +P L+ K+G VG K L+E
Sbjct: 64 PGTAPKYIERGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCD-PCKLMAPCLEAIVERMNGKVQLAKVDVDL 117
+TD F+ V +A ++VDF+A+WC PCK++AP L+ I + GK+ +AK+++D
Sbjct: 5 IHLTDD-SFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQ 63
Query: 118 MTDLAMDYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEEL 156
A Y + +P L+ K+G VG K L+E
Sbjct: 64 NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 103
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
+TD F+ V +A ++VDF+A+WC CK++AP L+ I + GK+ +AK+++D
Sbjct: 5 IHLTDD-SFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEEL 156
A Y + +P L+ K+G VG K L+E
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 61 ITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTD 120
+T Q EF++ + Q + VIVDFFA+WC PCK +AP E + K+ KVDVD +++
Sbjct: 13 VTSQAEFDSIISQ-NELVIVDFFAEWCGPCKRIAPFYEE-CSKTYTKMVFIKVDVDEVSE 70
Query: 121 LAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEEL 156
+ ++S+P K+G D +G S L++L
Sbjct: 71 VTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQL 106
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
Q EF++ + Q V+VDF+A WC P K++AP +E E+ + K+DVD +
Sbjct: 10 QFKTASEFDSAIAQ-DKLVVVDFYATWCGPSKMIAPMIEKFSEQYP-QADFYKLDVDELG 67
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVG 147
D+A +VS++P L+ K+G+E + VG
Sbjct: 68 DVAQKNEVSAMPTLLLFKNGKEVAKVVG 95
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
++T+ EF +KQ + +++DF+A WC PCK+M P L +++ V+ K DVD
Sbjct: 16 KLTNLTEFRNLIKQ-NDKLVIDFYATWCGPCKMMQPHLTKLIQAYP-DVRFVKCDVDESP 73
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEE 155
D+A + +V+++P + KDG+ + +G + LE+
Sbjct: 74 DIAKECEVTAMPTFVLGKDGQLIGKIIGANPTALEK 109
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMK 137
V+VDFFA WC PCK +AP + + E+ + KVDVD + + A Y +S++P I +K
Sbjct: 36 VVVDFFATWCGPCKTIAPLFKELSEKYDA--IFVKVDVDKLEETARKYNISAMPTFIAIK 93
Query: 138 DGREQDRFVGFQKSNLEEL 156
+G + VG + +E++
Sbjct: 94 NGEKVGDVVGASIAKVEDM 112
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMK 137
V+VDFFA WC PCK +AP + + E+ + KVDVD + + A Y +S++P I +K
Sbjct: 27 VVVDFFATWCGPCKTIAPLFKELSEKYDA--IFVKVDVDKLEETARKYNISAMPTFIAIK 84
Query: 138 DGREQDRFVGFQKSNLEEL 156
+G + VG + +E++
Sbjct: 85 NGEKVGDVVGASIAKVEDM 103
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 70 KVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSS 129
K ++ T V+VDF A WC PC+ +AP + +++ V KVD D + +A D+ + +
Sbjct: 33 KANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN-VLFLKVDTDELKSVASDWAIQA 91
Query: 130 VPVLIRMKDGREQDRFVGFQKSNLE 154
+P + +K+G+ D+ VG +K L+
Sbjct: 92 MPTFMFLKEGKILDKVVGAKKDELQ 116
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 4/92 (4%)
Query: 65 KEFEAKVKQASTP---VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDL 121
+++ ++++A+T V++DF A WC PC++MAP + ++ V L KVDVD + +
Sbjct: 21 EQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFL-KVDVDELKPI 79
Query: 122 AMDYQVSSVPVLIRMKDGREQDRFVGFQKSNL 153
A + V ++P + MK+G +DR VG K L
Sbjct: 80 AEQFSVEAMPTFLFMKEGDVKDRVVGAIKEEL 111
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 6/95 (6%)
Query: 70 KVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSS 129
++K+A V+VDFFA WC PC+ + L +I E N V KVDVD + A Y VSS
Sbjct: 18 RIKEAPGLVLVDFFATWCGPCQRLGQILPSIAE-ANKDVTFIKVDVDKNGNAADAYGVSS 76
Query: 130 VPVLIRM-KDGRE---QDRFVGFQKSNLE-ELEAF 159
+P L + K+G E D+FVG S ++ ++E F
Sbjct: 77 IPALFFVKKEGNEIKTLDQFVGADVSRIKADIEKF 111
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 56 STSFQITDQKEFEAKVKQASTP--VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKV 113
S ++TD FE+++ + ++V+FFA WC K +AP EA R+ G V LAKV
Sbjct: 1 SDVLELTDDN-FESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKV 59
Query: 114 DVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVG 147
D T+ Y VS P L +DG E + G
Sbjct: 60 DCTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDG 93
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 14/95 (14%)
Query: 67 FEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG--KVQLAKVDVDLMTDLAMD 124
F+ V + V+++F+A WC CK + P + + E+++ + +AK+D D+
Sbjct: 362 FDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDA-TANDVPSP 420
Query: 125 YQVSSVPVLI-----------RMKDGREQDRFVGF 148
Y+V P + + + GRE F+ +
Sbjct: 421 YEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISY 455
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
+TD F+ V +A ++VDF+A+WC K++AP L+ I + GK+ +AK+++D
Sbjct: 5 IHLTDD-SFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEEL 156
A Y + +P L+ K+G VG K L+E
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 40/62 (64%)
Query: 73 QASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPV 132
+ P IVDF+A WC PCK++AP L+ + + +G++ + KVD + +LA + + S+P
Sbjct: 36 EGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPS 95
Query: 133 LI 134
++
Sbjct: 96 IL 97
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 69 AKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVS 128
AK K+ P++VDF A WC PCK++AP E + GKV KVDVD + +A ++
Sbjct: 18 AKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGIT 77
Query: 129 SVPVLIRMKDGREQDRFVGFQKSNLEELEA 158
++P KDG + D VG + L+ L A
Sbjct: 78 AMPTFHVYKDGVKADDLVGASQDKLKALVA 107
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 16/113 (14%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDP--------------CKLMAPCLEAIVERM 104
+TD F+ V +A ++VDF+A+WC P CK++AP L+ I +
Sbjct: 6 IHLTDD-SFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEY 64
Query: 105 NGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEEL 156
GK+ +AK+++D A Y + +P L+ K+G VG K L+E
Sbjct: 65 QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 117
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Query: 65 KEFEAKVKQASTP---VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDL 121
+++ ++++A+T V++DF A WC P ++MAP + ++ V L KVDVD + +
Sbjct: 24 EQWTMQIEEANTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPNAVFL-KVDVDELKPI 82
Query: 122 AMDYQVSSVPVLIRMKDGREQDRFVGFQKSNL 153
A + V ++P + MK+G +DR VG K L
Sbjct: 83 AEQFSVEAMPTFLFMKEGDVKDRVVGAIKEEL 114
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 12/103 (11%)
Query: 61 ITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTD 120
ITD EFE++V +A PV+V F+A WC PC+LM+P + + ++++ K+++D
Sbjct: 12 ITDA-EFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPT 70
Query: 121 LAMDYQVSSVPVLIRMKDGRE----------QDRFVGFQKSNL 153
Y+V VP L R+ G + +D+ + F ++L
Sbjct: 71 TVKKYKVEGVPAL-RLVKGEQILDSTEGVISKDKLLSFLDTHL 112
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 63 DQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLA 122
D K F++ + V VDF+A+WC PC ++AP +E + E +V K++ D D+A
Sbjct: 5 DSKNFDSFLASHEIAV-VDFWAEWCAPCLILAPIIEELAEDYP-QVGFGKLNSDENPDIA 62
Query: 123 MDYQVSSVPVLIRMKDGREQDRFVG 147
Y V S+P +I KDG D +G
Sbjct: 63 ARYGVMSLPTVIFFKDGEPVDEIIG 87
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 61 ITDQKEFEAKVKQASTP---VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDL 117
IT ++ ++ K+ +AS V+ +F A+WC PCK +AP + E + L +DVD
Sbjct: 29 ITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLV-IDVDE 87
Query: 118 MTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEE 155
++D + +++ + P ++DG++ D+ VG K L +
Sbjct: 88 LSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHK 125
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMK 137
V+VDF A WC PCK++ P ++ E+ + + L +VDVD D+A + +V S+P K
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVDDCQDVASESEVKSMPTFQFFK 81
Query: 138 DGREQDRFVGFQKSNLE 154
G++ F G K LE
Sbjct: 82 KGQKVGEFSGANKEKLE 98
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 70 KVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSS 129
K+ Q P ++DF+A WC PC+ AP GKV+ KV+ + L+ +++ S
Sbjct: 50 KLLQDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRS 109
Query: 130 VPVLIRMKDGREQDRFVG 147
+P + ++G+ D G
Sbjct: 110 IPTIXLYRNGKXIDXLNG 127
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 66 EFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDY 125
+F+ +V+Q P+I+ F WC PCK M P E + +M G ++ A +D + +
Sbjct: 8 DFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAEKTMAEL 67
Query: 126 QVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTN 162
+ ++P L DG ++ F G N +L ++ N
Sbjct: 68 NIRTLPSLALFVDGMIREVFSG--TMNKSDLRYWINN 102
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMK 137
V+VDF A WC PCK++ P ++ E+ + + L +VDVD D+A + +V S+P K
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVDDCQDVASECEVKSMPTFQFFK 81
Query: 138 DGREQDRFVGFQKSNLE 154
G++ F G K LE
Sbjct: 82 KGQKVGEFSGANKEKLE 98
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 49/90 (54%)
Query: 69 AKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVS 128
AK K+ P++V F A WC PCK++AP E + GKV KVDVD + +A ++
Sbjct: 18 AKGKEEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGIT 77
Query: 129 SVPVLIRMKDGREQDRFVGFQKSNLEELEA 158
++P KDG + D VG + L+ L A
Sbjct: 78 AMPTFHVYKDGVKADDLVGASQDKLKALVA 107
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMK 137
V+VDF A WC PCK++ P ++ E+ + + L +VDVD D+A + +V + P K
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVDDAQDVASEAEVKATPTFQFFK 81
Query: 138 DGREQDRFVGFQKSNLE 154
G++ F G K LE
Sbjct: 82 KGQKVGEFSGANKEKLE 98
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMK 137
V+VDF+A+WC PC ++AP +E + +V K++ + D+AM Y + S+P ++ K
Sbjct: 26 VVVDFWAEWCAPCLILAPVIEELANDY-PQVAFGKLNTEESQDIAMRYGIMSLPTIMFFK 84
Query: 138 DGREQDRFVG 147
+G D+ +G
Sbjct: 85 NGELVDQILG 94
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 60 QITDQKEFEAKVKQASTP-VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
QI + F+ + A V+VDF A WC PCK++ P ++ E+ + + L +VDVD
Sbjct: 4 QIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVDDA 62
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEEL 156
D+A Y + +P L+ K+G VG K L+E
Sbjct: 63 QDVAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 101
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMK 137
V+VDF A WC PCK++ P ++ E+ + + L +VDVD D+A + +V +P K
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVDDCQDVASEXEVKCMPTFQFFK 81
Query: 138 DGREQDRFVGFQKSNLE 154
G++ F G K LE
Sbjct: 82 KGQKVGEFSGANKEKLE 98
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMK 137
V+VDF A WC PCK++ P ++ E+ + + L +VDVD D+A + +V P K
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVDDCQDVASECEVKCTPTFQFFK 81
Query: 138 DGREQDRFVGFQKSNLE 154
G++ F G K LE
Sbjct: 82 KGQKVGEFSGANKEKLE 98
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMK 137
V+VDF A WC PCK++ P ++ E+ + + L +VDVD D+A + +V +P K
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVDDCQDVASECEVKCMPTFQFFK 81
Query: 138 DGREQDRFVGFQKSNLE 154
G++ F G K LE
Sbjct: 82 KGQKVGEFSGANKEKLE 98
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 61 ITDQKEFEAKVKQASTP---VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDL 117
IT ++ ++ K+ +AS V+ +F A+WC P + +AP + E + L +DVD
Sbjct: 29 ITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLV-IDVDE 87
Query: 118 MTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEE 155
++D + +++ + P ++DG++ D+ VG K L +
Sbjct: 88 LSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHK 125
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMK 137
V+VDF A WC P K++ P ++ E+ + + L +VDVD D+A + +V S+P K
Sbjct: 23 VVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFL-EVDVDDSQDVASESEVKSMPTFQFFK 81
Query: 138 DGREQDRFVGFQKSNLEELEA 158
G++ F G +N E+LEA
Sbjct: 82 KGQKVGEFSG---ANKEKLEA 99
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 55 PSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVD 114
P S +T Q F KV Q T +VDF+A WC PC+ AP E + + GKV+ KVD
Sbjct: 2 PQASIDLTPQ-TFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVD 60
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMK 137
V+VDF A WC P K++ P ++ E+ + + L +VDVD D+A + +V + P K
Sbjct: 23 VVVDFSATWCGPAKMIKPFFHSLSEKYSNVIFL-EVDVDDAQDVASEAEVKATPTFQFFK 81
Query: 138 DGREQDRFVGFQKSNLE 154
G++ F G K LE
Sbjct: 82 KGQKVGEFSGANKEKLE 98
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMK 137
V+VDF A WC P K++ P ++ E+ + + L +VDVD D+A + +V S+P K
Sbjct: 34 VVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFL-EVDVDDCQDVASECEVKSMPTFQFFK 92
Query: 138 DGREQDRFVGFQKSNLE 154
G++ F G K LE
Sbjct: 93 KGQKVGEFSGANKEKLE 109
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMK 137
V+VDF A WC PCK++ P ++ E+ + + L +VDV+ D+A + +V +P K
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVNDCQDVASECEVKCMPTFQFFK 81
Query: 138 DGREQDRFVGFQKSNLE 154
G++ F G K LE
Sbjct: 82 KGQKVGEFSGANKEKLE 98
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 55 PSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGK---VQLA 111
P + +T ++ F+ V A ++V+F+A WC CK +AP E + ++ + + LA
Sbjct: 129 PEVTLVLT-KENFDEVVNDADI-ILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLA 186
Query: 112 KVDVDLMTDLAMDYQVSSVPVLIRMKDGREQD 143
KVD TDLA + VS P L + GR D
Sbjct: 187 KVDATAETDLAKRFDVSGYPTLKIFRKGRPYD 218
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGK---VQLAKVDVDLMTDLAMDYQVSSVPVLI 134
V+++F+A WC CK AP E I + K + +AK+D + LA + VS P +
Sbjct: 35 VLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIK 94
Query: 135 RMKDGREQD 143
+K G+ D
Sbjct: 95 ILKKGQAVD 103
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGK---VQLAKVDVDLMTDLAMDYQVSSVPVLI 134
++V+F+A WC CK +AP E + ++ + + LAKVD TDLA + VS P L
Sbjct: 27 ILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDLAKRFDVSGYPTLK 86
Query: 135 RMKDGREQD 143
+ GR D
Sbjct: 87 IFRKGRPFD 95
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMK 137
V+VD +A+WC PC L P + + E+ GK +++VD +A Y V ++P +
Sbjct: 24 VLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPTTLIFV 83
Query: 138 DGREQDRFVG 147
+G+ D VG
Sbjct: 84 NGQLVDSLVG 93
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 71 VKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSV 130
V +T +++ FFAKWC C + + ++ + + ++ L KVD+D LA + V S+
Sbjct: 38 VNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSL 97
Query: 131 PVLIRMKDGR---EQDRFVG 147
P +I +K+ +D FV
Sbjct: 98 PTIILLKNKTMLARKDHFVS 117
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMK 137
V+VDF A WC P K++ P ++ E+ + + L +VDVD D+A + +V +P K
Sbjct: 23 VVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFL-EVDVDDCQDVASECEVKRMPTFQFFK 81
Query: 138 DGREQDRFVGFQKSNLE 154
G++ F G K LE
Sbjct: 82 KGQKVGEFSGANKEKLE 98
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 65 KEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAM- 123
K F+ + + +V+F+A WC CK ++ +R++G VQ+A V+ DL + A+
Sbjct: 25 KSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALC 84
Query: 124 -DYQVSSVPVLIRMK 137
Y V+ P L+ +
Sbjct: 85 AKYDVNGFPTLMVFR 99
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 74 ASTPVIVDFFAKWCDPCKLMAPCLEAIVERM---NGKVQLAKVDVDLMTDLAMDYQVSSV 130
A ++V+F+A WC CK +AP ++ +++LAKVD +DLA Y V
Sbjct: 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGY 82
Query: 131 PVLIRMKDG 139
P + ++G
Sbjct: 83 PTIKFFRNG 91
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%)
Query: 75 STPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLI 134
+TPV+ F+++ C + P LE++ + NG+ LAK+D D +A + + ++P +
Sbjct: 26 TTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVY 85
Query: 135 RMKDGREQDRFVG 147
++G+ D F G
Sbjct: 86 LFQNGQPVDGFQG 98
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 79 IVDFFAKWCDPCKLMAPCLEAIVERMN-GKVQLAKVDVDLMTDLAMDYQVSS------VP 131
IV+FFA W + C+ AP + + N + KVDV TD++ Y+VS+ +P
Sbjct: 30 IVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLP 89
Query: 132 VLIRMKDGREQDR 144
LI + G+E R
Sbjct: 90 TLILFQGGKEAMR 102
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 41/73 (56%)
Query: 75 STPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLI 134
+TPV+ F+++ C + P LE++ + +G+ LAK+D D +A + + ++P +
Sbjct: 26 TTPVLFYFWSERSQHCLQLTPVLESLAAQYHGQFILAKLDCDAEQXIAAQFGLRAIPTVY 85
Query: 135 RMKDGREQDRFVG 147
++G+ D F G
Sbjct: 86 LFQNGQPVDGFQG 98
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Query: 65 KEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQL--AKVDVDLMTDLA 122
K F+A V V+++F+A WC CK + P ++ ++ G+ L AK+D D+
Sbjct: 15 KTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDA-TANDIT 73
Query: 123 MD-YQVSSVPVLIRMKDGREQD--RFVGFQKSNLEELEAFVT-NAEKPAETSE 171
D Y+V P + G +++ +F G + +LE L F+ +A K + T E
Sbjct: 74 NDQYKVEGFPTIYFAPSGDKKNPIKFEGGNR-DLEHLSKFIDEHATKRSRTKE 125
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMK 137
V+VDF A W P K++ P ++ E+ + + L +VDVD D+A + +V +P K
Sbjct: 23 VVVDFSATWSGPSKMIKPFFHSLSEKYSNVIFL-EVDVDDCQDVASECEVKCMPTFQFFK 81
Query: 138 DGREQDRFVGFQKSNLE 154
G++ F G K LE
Sbjct: 82 KGQKVGEFSGANKEKLE 98
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 45.8 bits (107), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 55 PSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVD 114
P S +T Q F KV Q T +VDF+A W P + AP E + + GKV+ KVD
Sbjct: 656 PQASIDLTPQT-FNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVD 714
Score = 35.0 bits (79), Expect = 0.022, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 77 PVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLI 134
P +VDFFA W P + + P L + G++++ +D + L Y + + P +
Sbjct: 457 PWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTV 514
Score = 28.1 bits (61), Expect = 3.4, Method: Composition-based stats.
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVD 114
+VDF++ W P +++ P + + + G + + VD
Sbjct: 567 MVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVD 602
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEA----IVERMNGKVQLAKVD 114
++TD F+ V + +V+F+A WC CK + P A + E+ GKV+LA VD
Sbjct: 10 IELTDDS-FDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVD 68
Query: 115 VDLMTDLAMDYQVSSVPVLIRMKDGREQ-DRFVGFQKSNL--EELEAFVTNAEKPAETSE 171
+ LA Y + P + + G D G +S++ L+ F NA P E E
Sbjct: 69 ATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNA-PPPELLE 127
Query: 172 GVPS 175
PS
Sbjct: 128 SGPS 131
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVER----MNGKVQLAKVDVDLMTDLAMDYQVSSVPVL 133
+ F+A WC CK +AP E + ++ + G V++A+VD ++ Y V P L
Sbjct: 26 TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAG-VKIAEVDCTAERNICSKYSVRGYPTL 84
Query: 134 IRMKDGREQDRFVGFQKSNLEELEAFVTNAEK 165
+ + G++ G + +L+ L FV + K
Sbjct: 85 LLFRGGKKVSEHSGGR--DLDSLHRFVLSQAK 114
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 56 STSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVER----MNGKVQLA 111
ST +T+ F+ + + T + F+A WC CK +AP E + ++ + G V++A
Sbjct: 5 STVLALTENN-FDDTIAEGIT--FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAG-VKIA 60
Query: 112 KVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFV 160
+VD ++ Y V P L+ + G++ G + +L+ L FV
Sbjct: 61 EVDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGR--DLDSLHRFV 107
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 60 QITDQKEFEAKVKQASTP--VIVDFFAKWCDPCKLMAPCLEAIV-ERMNGKVQLAKVDVD 116
+I DQ++F A+ +++ F W +PCK + EAI E N V +D D
Sbjct: 4 EINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDAD 63
Query: 117 LMTDLAMDYQVSSVPVLIRMKDG 139
++++ +++S+VP I + G
Sbjct: 64 ENSEISELFEISAVPYFIIIHKG 86
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMK 137
V+VDF A WC PCK++ P ++ E+ + + L +VDVD D+A + +V +P K
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVDDXQDVASEXEVKCMPTFQFFK 81
Query: 138 DGREQDRFVGFQKSNLEELEA 158
G++ F G +N E+LEA
Sbjct: 82 KGQKVGEFSG---ANKEKLEA 99
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 79 IVDFFAKWCDPCKLMAPCLEAIVER----MNGKVQLAKVDVDLMTDLAMDYQVSSVPVLI 134
+ F+A WC CK +AP E + ++ + G V++A+VD ++ Y V P L+
Sbjct: 20 FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAG-VKIAEVDCTAERNICSKYSVRGYPTLL 78
Query: 135 RMKDGREQDRFVGFQKSNLEELEAFVTNAEK 165
+ G++ G + +L+ L FV + K
Sbjct: 79 LFRGGKKVSEHSGGR--DLDSLHRFVLSQAK 107
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGK---VQLAKVDVDLMTDLAMDYQVSSVPVLI 134
V+++F+A WC CK AP E I + + +AK+D + LA + VS P +
Sbjct: 37 VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIK 96
Query: 135 RMKDGREQD 143
+K G+ D
Sbjct: 97 ILKKGQAVD 105
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 79 IVDFFAKWCDPCKLMAPCLE----AIVERM--NGKVQLAKVDVDLMTDLAMDYQVSSVPV 132
+V+F+A WC + + P E I E +V A+VD D +D+A Y++S P
Sbjct: 26 LVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPT 85
Query: 133 LIRMKDGREQDRFVGFQKS 151
L ++G R Q+S
Sbjct: 86 LKLFRNGXXXKREYRGQRS 104
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 73 QASTPVIVDFFAKWCDPCKLMAP----CLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVS 128
Q+ V+ +FFA WC CK MAP E +VE+ + LA++D DL M++ +
Sbjct: 29 QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK---NITLAQIDCTENQDLCMEHNIP 85
Query: 129 SVPVLIRMKD 138
P L K+
Sbjct: 86 GFPSLKIFKN 95
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 56 STSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERM---NGKVQLAK 112
S+ FQ+ K + V V+V ++A WC CK +AP + + + V +AK
Sbjct: 358 SSVFQLV-GKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAK 416
Query: 113 VD 114
+D
Sbjct: 417 LD 418
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 79 IVDFFAKWCDPCKLMAPCLEAIVERM-NGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMK 137
+++F+A WC C+ + P E+ E + +V +AKVDV L+ + ++++P + K
Sbjct: 26 MIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYHCK 85
Query: 138 DGREQDRFVG 147
DG E R+ G
Sbjct: 86 DG-EFRRYQG 94
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 14/95 (14%)
Query: 67 FEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERM--NGKVQLAKVDVDLMTDLAMD 124
F+ V + V+++F+A WC CK + P + + E++ + + +AK+D D+
Sbjct: 37 FDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDA-TANDVPSP 95
Query: 125 YQVSSVPVLI-----------RMKDGREQDRFVGF 148
Y+V P + + + GRE F+ +
Sbjct: 96 YEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISY 130
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 66 EFEAKVK-QASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMD 124
+FE ++ +A + ++V F+A W C M + + + + +V K++ + + +++
Sbjct: 28 QFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEGVPEVSEK 86
Query: 125 YQVSSVPVLIRMKDGREQDRFVG 147
Y++SSVP + K+ ++ DR G
Sbjct: 87 YEISSVPTFLFFKNSQKIDRLDG 109
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 77 PVIVDFFAKWCDPCKLMAPCLEAIVE 102
PV++D F +WC PCK MAP E + E
Sbjct: 39 PVVLDMFTQWCGPCKAMAPKYEKLAE 64
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 77 PVIVDFFAKWCDPCKLMAPCLEAIVE 102
PV++D F +WC PCK MAP E + E
Sbjct: 27 PVVLDMFTQWCGPCKAMAPKYEKLAE 52
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 66 EFEAKVK-QASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMD 124
+FE ++ +A + ++V F+A W C M + + + + +V K++ + + +++
Sbjct: 22 QFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEGVPEVSEK 80
Query: 125 YQVSSVPVLIRMKDGREQDRFVG 147
Y++SSVP + K+ ++ DR G
Sbjct: 81 YEISSVPTFLFFKNSQKIDRLDG 103
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 30/67 (44%)
Query: 67 FEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQ 126
F +V Q+ +V+F+A WC C+ + P + + V++ V+ D L Y
Sbjct: 27 FNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYG 86
Query: 127 VSSVPVL 133
V P +
Sbjct: 87 VQGFPTI 93
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 77 PVIVDFFAKWCDPCKLMAPCLEAIVE 102
PV++D F +WC P K MAP E + E
Sbjct: 26 PVVLDMFTQWCGPSKAMAPKYEKLAE 51
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 37/94 (39%)
Query: 54 APSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKV 113
+ + S + D FE + +V F K C C+ + P LE + V
Sbjct: 1 SNAXSLEKLDTNTFEQLIYDEGKACLVXFSRKNCHVCQKVTPVLEELRLNYEESFGFYYV 60
Query: 114 DVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVG 147
DV+ L + + VP ++ KDG + + G
Sbjct: 61 DVEEEKTLFQRFSLKGVPQILYFKDGEYKGKXAG 94
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 28/69 (40%)
Query: 65 KEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMD 124
K FE V V+F+A WC CK +AP + + E + +D +
Sbjct: 257 KNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEA 316
Query: 125 YQVSSVPVL 133
+V S P L
Sbjct: 317 VKVHSFPTL 325
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 82 FFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGRE 141
F A WC PCK + +E I V+ AKVD D +++ +V +P I + G+
Sbjct: 44 FTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSEIVSKCRVLQLPTFIIARSGKM 102
Query: 142 QDRFVG 147
+G
Sbjct: 103 LGHVIG 108
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 28/69 (40%)
Query: 65 KEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMD 124
K FE V V+F+A WC CK +AP + + E + +D +
Sbjct: 15 KNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEA 74
Query: 125 YQVSSVPVL 133
+V S P L
Sbjct: 75 VKVHSFPTL 83
>pdb|3OR5|A Chain A, Crystal Structure Of Thiol:disulfide Interchange
Protein, Thioredoxin Family Protein From Chlorobium
Tepidum Tls
Length = 165
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 54 APSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCK 91
APS S D K F + + IV+FFA WC PC+
Sbjct: 14 APSFSGVTVDGKPFSSASLKGKA-YIVNFFATWCPPCR 50
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 33.5 bits (75), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 52 AEAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIV-----ERMNG 106
+E P T + K + V + V+++F+A WC CK +AP E +
Sbjct: 5 SEGPVT---VVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKD 61
Query: 107 KVQLAKVD 114
+V +AKVD
Sbjct: 62 RVVIAKVD 69
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 33.1 bits (74), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 27/71 (38%)
Query: 70 KVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSS 129
+V+ + PV+V F++ C CK P E + ++++ A Y V
Sbjct: 19 QVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQG 78
Query: 130 VPVLIRMKDGR 140
P GR
Sbjct: 79 TPTFKFFCHGR 89
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGK 107
+ +D +A WC PC+ P L+ + E+ GK
Sbjct: 33 IYIDVWATWCGPCRGELPALKELEEKYAGK 62
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 54 APSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG---KVQL 110
+PS + V + + V+FFA WC C AP A+ E + + L
Sbjct: 9 SPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYL 68
Query: 111 AKVDVDLMTDLAM--DYQVSSVPVL 133
A +D T+ A+ D+ + P +
Sbjct: 69 AALDCAEETNSAVCRDFNIPGFPTV 93
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 24/104 (23%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGK-VQLAKVDVDLMTD--------------LA 122
V +DF+A WC PC+ P + K Q+ V++D T +A
Sbjct: 31 VYLDFWASWCGPCRQSFPWXNQXQAKYKAKGFQVVAVNLDAKTGDAXKFLAQVPAEFTVA 90
Query: 123 MD--------YQVSSVPVLIRM-KDGREQDRFVGFQKSNLEELE 157
D Y V P + ++G+ + VGF+ ++ E LE
Sbjct: 91 FDPKGQTPRLYGVKGXPTSFLIDRNGKVLLQHVGFRPADKEALE 134
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 74 ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVL 133
S +V F + C PC +AP ++ + V L +VDV A +S+ P
Sbjct: 20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFL-EVDVHQCQGTAATNNISATPTF 78
Query: 134 IRMKDGREQDRFVGFQKSNLEE 155
++ D++ G LEE
Sbjct: 79 QFFRNKVRIDQYQGADAVGLEE 100
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 17/95 (17%)
Query: 75 STPVIVDFFAKWCDPCKLMAPCLEAIVERMN-GKVQLAKVDVDLMTDLAMDYQVSSVP-- 131
++ +++ F A WC PC + E ++N V L +DVD+ L + + ++P
Sbjct: 40 NSSIVIKFGAVWCKPCNKIK---EYFKNQLNYYYVTLVDIDVDIHPKLNDQHNIKALPTF 96
Query: 132 ----------VLIRMKDGREQDRF-VGFQKSNLEE 155
VL+ +G Q+ FQK LE+
Sbjct: 97 EFYFNLNNEWVLVHTVEGANQNDIEKAFQKYCLEK 131
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 63 DQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLA 122
+++EF+A V V+F++ C C +AP + ++G +++ V+ L
Sbjct: 103 ERREFDAAVNSGEL-WFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLC 161
Query: 123 MDYQVSSVPVLIRMKDG 139
V+S P L + G
Sbjct: 162 RMKGVNSYPSLFIFRSG 178
>pdb|3IA1|A Chain A, Crystal Structure Of Thio-Disulfide Isomerase From Thermus
Thermophilus
pdb|3IA1|B Chain B, Crystal Structure Of Thio-Disulfide Isomerase From Thermus
Thermophilus
Length = 154
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 55 PSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVE 102
P F + D K S P ++ F+A WC CK P L + E
Sbjct: 10 PLPDFLLLDPKGQPVTPATVSKPAVIVFWASWCTVCKAEFPGLHRVAE 57
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 55 PSTSFQITDQK-----EFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG-KV 108
P +F+ D K +F K ++V+ +A WC PC+ P L+ + +++G
Sbjct: 41 PDLAFEDADGKPKKLSDFRGKT------LLVNLWATWCVPCRKEMPALDELQGKLSGPNF 94
Query: 109 QLAKVDVD 116
++ +++D
Sbjct: 95 EVVAINID 102
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 52 AEAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCL 97
++AP+ + T+ K E + V ++F+ WC+PCK P +
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKG-VFLNFWGTWCEPCKKQFPYM 48
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced Form
Length = 110
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKD 138
IV F C CK M L+ R +V ++ VD + +L + VP L+ ++D
Sbjct: 23 IVFFHKNLCPHCKNMEKVLDKFGARAP-QVAISSVDSEARPELMKELGFERVPTLVFIRD 81
Query: 139 GREQDRFVGFQKSNLEELEAFVTN 162
G+ F G N EL+A +
Sbjct: 82 GKVAKVFSGIM--NPRELQALYAS 103
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 52 AEAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCL 97
++AP+ + T+ K E + V ++F+ WC+PCK P +
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKG-VFLNFWGTWCEPCKKEFPYM 48
>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|2F9S|B Chain B, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
Length = 151
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 52 AEAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAP 95
++AP+ + T+ K E + V ++F+ WC+PCK P
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKG-VFLNFWGTWCEPCKKEFP 46
>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The
Electron Transfer Catalyst Dsbd (Oxidized Form)
pdb|2FWF|A Chain A, High Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form)
pdb|2FWG|A Chain A, High Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd
(Photoreduced Form)
pdb|2FWH|A Chain A, Atomic Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form At Ph7)
Length = 134
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 68 EAKVKQASTPVIVDFFAKWCDPCK 91
+A V+ PV++D +A WC CK
Sbjct: 24 QALVEAKGKPVMLDLYADWCVACK 47
>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma
pdb|1UC7|B Chain B, Crystal Structure Of Dsbdgamma
Length = 125
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 68 EAKVKQASTPVIVDFFAKWCDPCK 91
+A V+ PV++D +A WC CK
Sbjct: 21 QALVEAKGKPVMLDLYADWCVACK 44
>pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|B Chain B, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|C Chain C, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|D Chain D, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|E Chain E, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|F Chain F, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 154
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 78 VIVDFFAKWCDPCK 91
VIV+F+A WC PC+
Sbjct: 31 VIVNFWATWCPPCR 44
>pdb|4DVC|A Chain A, Structural And Functional Studies Of Tcpg, The Vibrio
Cholerae Dsba Disulfide-Forming Protein Required For
Pilus And Cholera Toxin Production
Length = 184
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 70 KVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
K +S+PV+ +FF+ +C C P + + +++ + K V M
Sbjct: 16 KTPASSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFM 64
>pdb|2IJY|A Chain A, Nmr Structure Ensemble For The Reduced Dsba Disulphide
Oxidoreductase From Vibrio Cholerae
Length = 181
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 70 KVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
K +S+PV+ +FF+ +C C P + + +++ + K V M
Sbjct: 13 KTPASSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFM 61
>pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei
Length = 144
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMN 105
V + F A WC PC+ P L E+ +
Sbjct: 31 VFLYFSASWCPPCRGFTPVLAEFYEKHH 58
>pdb|1BED|A Chain A, Structure Of Disulfide Oxidoreductase
Length = 181
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 70 KVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
K +S+PV+ +FF+ +C C P + + +++ + K V M
Sbjct: 13 KTPASSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFM 61
>pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1O81|B Chain B, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1OC9|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 74 ASTPVIVDFFAKWCDPCKLMAPCL----EAIVERMNGKVQLAKVD 114
A V F A WC PC+ P L +A E+ N +V L D
Sbjct: 30 AGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKNFEVMLISWD 74
>pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
pdb|1O6J|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
Length = 150
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 74 ASTPVIVDFFAKWCDPCKLMAPCL----EAIVERMNGKVQLAKVD 114
A V F A WC PC+ P L +A E+ N +V L D
Sbjct: 28 AGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKNFEVMLISWD 72
>pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii
pdb|1FG4|B Chain B, Structure Of Tryparedoxin Ii
Length = 149
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 74 ASTPVIVDFFAKWCDPCKLMAPCL----EAIVERMNGKVQLAKVD 114
A V F A WC PC+ P L +A E+ N +V L D
Sbjct: 27 AGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKNFEVMLISWD 71
>pdb|2XZM|C Chain C, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|C Chain C, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 243
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 86 WCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSV 130
W +P K C A VE MN K L K D+ LA +Y + SV
Sbjct: 90 WAEPIKFKGLCASAQVEAMNYK--LLK---DVPVRLAANYIIKSV 129
>pdb|2KUC|A Chain A, Solution Structure Of A Putative Disulphide-Isomerase From
Bacteroides Thetaiotaomicron
Length = 130
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 78 VIVDFFAKWCDPCKLMAPCL---EAIVERMNGKVQLAKVDVDL--MTDLAMDYQVSSVPV 132
+ VD F WC PCK ++ + + + N K+D++ +L Y V + P
Sbjct: 30 LFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPT 89
Query: 133 LIRMK-DGREQDRFVG 147
L+ + G R VG
Sbjct: 90 LLFINSSGEVVYRLVG 105
>pdb|2IJA|A Chain A, Human N-Acetyltransferase 1 F125s Mutant
Length = 295
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 97 LEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVP 131
+EA +ER+ K K+D++ +TD+ + +Q+ +VP
Sbjct: 8 IEAYLERIGYKKSRNKLDLETLTDI-LQHQIRAVP 41
>pdb|2PFR|A Chain A, Human N-Acetyltransferase 2
pdb|2PFR|B Chain B, Human N-Acetyltransferase 2
Length = 294
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 97 LEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVP 131
+EA ER+ K K+D++ +TD+ +++Q+ +VP
Sbjct: 7 IEAYFERIGYKNSRNKLDLETLTDI-LEHQIRAVP 40
>pdb|2ATM|A Chain A, Crystal Structure Of The Recombinant Allergen Ves V 2
Length = 331
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 121 LAMDYQVSSVPVLIRMKDGREQDRFVGF-QKSNLE-ELEAFVTNAEK--PAETSEGV 173
+A+ Y P L+ +KDG+ + R G Q+ N+ L+ F+ N +K P G+
Sbjct: 47 IAIFYDPGEFPALLSLKDGKYKKRNGGVPQEGNITIHLQKFIENLDKIYPNRNFSGI 103
>pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 74 ASTPVIVDFFAKWCDPCKLMAPCL----EAIVERMNGKVQLAKVD 114
A V F A WC PC+ P L +A E N +V L D
Sbjct: 30 AGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAESKNFEVMLISWD 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.126 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,548,386
Number of Sequences: 62578
Number of extensions: 145750
Number of successful extensions: 511
Number of sequences better than 100.0: 176
Number of HSP's better than 100.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 181
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)