Query psy17832
Match_columns 189
No_of_seqs 200 out of 1499
Neff 9.2
Searched_HMMs 46136
Date Sat Aug 17 00:09:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17832.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17832hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910|consensus 100.0 1E-27 2.2E-32 169.5 11.8 108 56-165 42-149 (150)
2 cd02954 DIM1 Dim1 family; Dim1 99.9 9.4E-25 2E-29 149.9 14.4 101 64-164 2-111 (114)
3 PHA02278 thioredoxin-like prot 99.9 6.5E-24 1.4E-28 144.4 12.5 94 63-159 3-100 (103)
4 cd02985 TRX_CDSP32 TRX family, 99.9 9.4E-24 2E-28 144.0 12.7 95 63-161 2-100 (103)
5 COG3118 Thioredoxin domain-con 99.9 3.8E-24 8.3E-29 166.3 11.7 106 59-166 25-132 (304)
6 cd03065 PDI_b_Calsequestrin_N 99.9 8.9E-24 1.9E-28 147.1 12.2 102 61-165 13-120 (120)
7 cd03006 PDI_a_EFP1_N PDIa fami 99.9 1.2E-23 2.5E-28 145.4 12.5 103 54-159 7-112 (113)
8 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 8.4E-24 1.8E-28 144.3 11.7 99 60-160 4-104 (104)
9 PF00085 Thioredoxin: Thioredo 99.9 2.1E-23 4.6E-28 141.4 12.4 101 61-163 3-103 (103)
10 PRK09381 trxA thioredoxin; Pro 99.9 3.3E-23 7.1E-28 142.6 13.5 103 61-165 7-109 (109)
11 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 1.5E-23 3.2E-28 142.4 11.3 97 60-159 4-100 (101)
12 cd02956 ybbN ybbN protein fami 99.9 2.2E-23 4.8E-28 140.1 11.2 94 66-161 2-96 (96)
13 PLN00410 U5 snRNP protein, DIM 99.9 2.4E-23 5.3E-28 148.1 11.8 111 60-172 7-128 (142)
14 KOG0907|consensus 99.9 3.7E-23 7.9E-28 140.9 11.7 91 68-162 14-104 (106)
15 cd02948 TRX_NDPK TRX domain, T 99.9 9.3E-23 2E-27 138.8 13.5 98 61-163 4-102 (102)
16 cd02963 TRX_DnaJ TRX domain, D 99.9 3.5E-23 7.7E-28 143.0 11.5 99 63-163 10-111 (111)
17 PRK10996 thioredoxin 2; Provis 99.9 3.1E-22 6.8E-27 143.5 14.5 104 57-164 36-139 (139)
18 cd02950 TxlA TRX-like protein 99.9 5.2E-22 1.1E-26 142.8 13.8 100 65-167 11-113 (142)
19 cd02999 PDI_a_ERp44_like PDIa 99.9 1.9E-22 4.1E-27 136.8 10.6 84 73-160 16-100 (100)
20 cd02996 PDI_a_ERp44 PDIa famil 99.9 6.3E-22 1.4E-26 136.0 11.6 98 60-160 4-108 (108)
21 cd03002 PDI_a_MPD1_like PDI fa 99.9 5.6E-22 1.2E-26 136.2 11.3 98 61-160 4-108 (109)
22 cd02965 HyaE HyaE family; HyaE 99.9 6.5E-22 1.4E-26 135.0 11.0 94 61-157 14-109 (111)
23 TIGR01068 thioredoxin thioredo 99.9 1.8E-21 3.8E-26 131.4 13.1 100 63-164 2-101 (101)
24 PTZ00443 Thioredoxin domain-co 99.9 1.5E-21 3.3E-26 149.6 13.6 108 59-168 32-143 (224)
25 cd02986 DLP Dim1 family, Dim1- 99.9 3.2E-21 7E-26 131.6 13.7 102 64-165 2-112 (114)
26 cd03005 PDI_a_ERp46 PDIa famil 99.9 1.4E-21 3.1E-26 132.5 11.9 96 61-160 4-102 (102)
27 cd02994 PDI_a_TMX PDIa family, 99.9 1.5E-21 3.3E-26 132.4 11.9 97 60-162 4-101 (101)
28 cd02989 Phd_like_TxnDC9 Phosdu 99.9 7.9E-21 1.7E-25 131.6 14.2 102 57-160 5-112 (113)
29 cd02984 TRX_PICOT TRX domain, 99.9 3.5E-21 7.5E-26 129.5 11.7 95 63-160 1-96 (97)
30 cd03001 PDI_a_P5 PDIa family, 99.9 4.6E-21 9.9E-26 130.2 12.1 99 60-160 3-102 (103)
31 cd02949 TRX_NTR TRX domain, no 99.9 4.9E-21 1.1E-25 129.1 12.1 93 67-161 5-97 (97)
32 cd02957 Phd_like Phosducin (Ph 99.9 5.7E-21 1.2E-25 132.4 12.2 86 62-149 9-96 (113)
33 cd02997 PDI_a_PDIR PDIa family 99.9 6.7E-21 1.4E-25 129.5 12.0 98 60-160 3-104 (104)
34 TIGR01126 pdi_dom protein disu 99.9 5.9E-21 1.3E-25 129.2 11.5 99 63-164 2-102 (102)
35 cd02962 TMX2 TMX2 family; comp 99.9 1.4E-20 3.1E-25 136.2 13.7 92 58-149 29-128 (152)
36 KOG0908|consensus 99.8 1.4E-20 3.1E-25 142.4 11.3 111 58-172 3-114 (288)
37 cd02953 DsbDgamma DsbD gamma f 99.8 9.5E-21 2.1E-25 129.2 9.1 93 65-160 2-103 (104)
38 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 2.7E-20 5.8E-25 126.5 10.6 98 60-160 3-104 (104)
39 PTZ00051 thioredoxin; Provisio 99.8 5.6E-20 1.2E-24 123.9 11.6 91 59-151 3-93 (98)
40 cd02951 SoxW SoxW family; SoxW 99.8 5.1E-20 1.1E-24 129.7 11.6 99 65-166 4-121 (125)
41 cd02998 PDI_a_ERp38 PDIa famil 99.8 3.2E-20 7E-25 126.2 10.0 99 60-160 3-105 (105)
42 cd02993 PDI_a_APS_reductase PD 99.8 7.1E-20 1.5E-24 126.0 11.4 99 60-160 4-109 (109)
43 cd02987 Phd_like_Phd Phosducin 99.8 1.3E-19 2.9E-24 134.5 13.3 106 55-162 61-173 (175)
44 cd03000 PDI_a_TMX3 PDIa family 99.8 1E-19 2.2E-24 124.2 11.2 94 65-163 7-103 (104)
45 cd02975 PfPDO_like_N Pyrococcu 99.8 3.3E-19 7.1E-24 123.5 11.4 90 73-165 20-111 (113)
46 cd02961 PDI_a_family Protein D 99.8 5.7E-19 1.2E-23 118.5 10.2 96 62-160 3-101 (101)
47 TIGR01295 PedC_BrcD bacterioci 99.8 2.2E-18 4.8E-23 120.8 12.3 97 60-161 9-121 (122)
48 PRK15412 thiol:disulfide inter 99.8 8.8E-19 1.9E-23 131.5 10.7 110 54-168 45-180 (185)
49 cd02992 PDI_a_QSOX PDIa family 99.8 1.7E-18 3.7E-23 120.1 10.4 82 60-141 4-90 (114)
50 cd02947 TRX_family TRX family; 99.8 4.9E-18 1.1E-22 111.9 11.1 91 66-160 2-92 (93)
51 cd02988 Phd_like_VIAF Phosduci 99.8 5.5E-18 1.2E-22 127.4 12.7 100 59-162 84-190 (192)
52 PRK14018 trifunctional thiored 99.8 5.2E-18 1.1E-22 143.6 12.4 105 53-162 37-171 (521)
53 PTZ00062 glutaredoxin; Provisi 99.8 5.8E-18 1.3E-22 127.9 11.2 93 62-166 4-96 (204)
54 KOG0190|consensus 99.8 2.5E-18 5.5E-23 143.3 9.6 112 55-170 24-138 (493)
55 PTZ00102 disulphide isomerase; 99.8 9.1E-18 2E-22 142.6 12.6 108 57-166 357-467 (477)
56 TIGR01130 ER_PDI_fam protein d 99.8 1.5E-17 3.3E-22 140.3 13.3 106 60-168 4-113 (462)
57 TIGR00385 dsbE periplasmic pro 99.7 1.8E-17 4E-22 123.0 11.6 107 54-165 40-172 (173)
58 TIGR00411 redox_disulf_1 small 99.7 3E-17 6.4E-22 106.9 10.5 81 78-164 2-82 (82)
59 PTZ00102 disulphide isomerase; 99.7 2.9E-17 6.3E-22 139.5 13.2 107 59-169 34-143 (477)
60 TIGR00424 APS_reduc 5'-adenyly 99.7 4.1E-17 8.9E-22 136.5 13.5 104 58-163 352-462 (463)
61 cd03010 TlpA_like_DsbE TlpA-li 99.7 2.6E-17 5.7E-22 116.0 9.9 94 55-151 4-123 (127)
62 cd02952 TRP14_like Human TRX-r 99.7 4.8E-17 1E-21 112.9 9.9 82 61-142 6-103 (119)
63 PLN02309 5'-adenylylsulfate re 99.7 1.1E-16 2.4E-21 133.9 13.0 105 57-163 345-456 (457)
64 TIGR02738 TrbB type-F conjugat 99.7 7.3E-17 1.6E-21 117.1 10.4 86 75-164 50-153 (153)
65 PRK03147 thiol-disulfide oxido 99.7 1.7E-16 3.7E-21 117.5 12.2 110 51-163 38-171 (173)
66 cd02959 ERp19 Endoplasmic reti 99.7 2.4E-17 5.3E-22 114.7 7.1 92 72-165 16-114 (117)
67 cd02982 PDI_b'_family Protein 99.7 8.6E-17 1.9E-21 109.2 8.9 88 75-164 12-103 (103)
68 cd03008 TryX_like_RdCVF Trypar 99.7 1.1E-16 2.5E-21 115.0 9.3 71 74-144 24-128 (146)
69 cd03007 PDI_a_ERp29_N PDIa fam 99.7 1.6E-16 3.5E-21 109.5 9.4 96 61-163 5-115 (116)
70 PLN02399 phospholipid hydroper 99.7 5.7E-16 1.2E-20 119.7 11.4 112 51-165 76-235 (236)
71 PF13098 Thioredoxin_2: Thiore 99.7 1.4E-16 3.1E-21 109.8 7.2 86 73-160 3-112 (112)
72 PF08534 Redoxin: Redoxin; In 99.7 4.2E-16 9.2E-21 112.3 9.1 106 53-159 5-145 (146)
73 PLN02919 haloacid dehalogenase 99.7 5.9E-16 1.3E-20 141.8 11.8 90 74-165 419-537 (1057)
74 TIGR01130 ER_PDI_fam protein d 99.7 8.8E-16 1.9E-20 129.6 11.7 108 58-169 347-459 (462)
75 PF13905 Thioredoxin_8: Thiore 99.7 8.3E-16 1.8E-20 102.9 9.1 67 75-141 1-95 (95)
76 cd02955 SSP411 TRX domain, SSP 99.7 1.8E-15 3.9E-20 106.1 11.1 100 63-163 4-118 (124)
77 PTZ00056 glutathione peroxidas 99.7 7.3E-16 1.6E-20 116.8 9.5 113 53-168 18-182 (199)
78 TIGR02187 GlrX_arch Glutaredox 99.7 1.1E-15 2.3E-20 117.3 10.5 91 74-166 18-113 (215)
79 cd02964 TryX_like_family Trypa 99.7 6.3E-16 1.4E-20 109.8 8.4 72 74-145 16-116 (132)
80 cd03009 TryX_like_TryX_NRX Try 99.6 7E-16 1.5E-20 109.3 8.5 71 74-144 17-115 (131)
81 KOG0190|consensus 99.6 6.9E-16 1.5E-20 128.9 8.0 104 58-165 367-474 (493)
82 PLN02412 probable glutathione 99.6 1.6E-15 3.5E-20 112.0 9.1 112 53-167 8-167 (167)
83 PRK00293 dipZ thiol:disulfide 99.6 3.1E-15 6.7E-20 129.4 12.1 102 60-164 456-570 (571)
84 PHA02125 thioredoxin-like prot 99.6 4.3E-15 9.4E-20 95.3 9.9 72 79-160 2-73 (75)
85 TIGR02740 TraF-like TraF-like 99.6 7.5E-15 1.6E-19 116.1 12.9 89 74-166 165-266 (271)
86 PRK13728 conjugal transfer pro 99.6 9.6E-15 2.1E-19 108.1 12.2 84 79-166 73-173 (181)
87 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 4.4E-15 9.6E-20 103.9 9.9 98 56-159 2-121 (123)
88 cd02967 mauD Methylamine utili 99.6 1.8E-15 3.9E-20 104.5 7.6 71 74-144 20-111 (114)
89 KOG0912|consensus 99.6 2E-15 4.3E-20 117.7 7.4 101 65-168 4-110 (375)
90 TIGR02187 GlrX_arch Glutaredox 99.6 1.7E-14 3.6E-19 110.7 11.9 82 75-162 132-214 (215)
91 cd02966 TlpA_like_family TlpA- 99.6 6.7E-15 1.5E-19 100.6 8.6 85 62-147 7-116 (116)
92 TIGR00412 redox_disulf_2 small 99.6 9.8E-15 2.1E-19 93.9 8.6 73 79-160 2-75 (76)
93 cd03012 TlpA_like_DipZ_like Tl 99.6 1.3E-14 2.9E-19 102.1 9.6 75 74-148 22-125 (126)
94 TIGR02661 MauD methylamine deh 99.6 1.7E-14 3.7E-19 108.6 10.0 108 53-163 51-178 (189)
95 KOG4277|consensus 99.6 6.8E-15 1.5E-19 114.8 7.2 88 74-164 42-132 (468)
96 TIGR02540 gpx7 putative glutat 99.6 3.2E-14 7E-19 103.5 9.9 106 56-164 4-153 (153)
97 cd00340 GSH_Peroxidase Glutath 99.5 2.8E-14 6.1E-19 103.7 8.5 101 55-159 3-151 (152)
98 PRK11509 hydrogenase-1 operon 99.5 2.1E-13 4.6E-18 95.8 12.5 104 62-168 22-128 (132)
99 cd02958 UAS UAS family; UAS is 99.5 2.4E-13 5.1E-18 94.2 11.5 92 72-165 14-112 (114)
100 cd02969 PRX_like1 Peroxiredoxi 99.5 1.7E-13 3.6E-18 101.5 11.1 116 55-170 5-158 (171)
101 KOG0191|consensus 99.5 6.1E-14 1.3E-18 116.3 9.7 104 65-170 37-140 (383)
102 TIGR01626 ytfJ_HI0045 conserve 99.5 9E-14 2E-18 103.4 9.2 81 73-158 57-174 (184)
103 PTZ00256 glutathione peroxidas 99.5 1.5E-13 3.2E-18 103.0 9.4 110 53-165 19-182 (183)
104 cd02973 TRX_GRX_like Thioredox 99.5 2.6E-13 5.5E-18 85.0 8.7 62 78-142 2-63 (67)
105 cd03017 PRX_BCP Peroxiredoxin 99.5 4.5E-13 9.8E-18 95.7 8.8 103 55-160 4-139 (140)
106 cd03014 PRX_Atyp2cys Peroxired 99.4 8.6E-13 1.9E-17 94.7 9.9 105 54-160 6-141 (143)
107 cd02960 AGR Anterior Gradient 99.4 1.1E-12 2.3E-17 92.2 9.8 78 72-150 20-101 (130)
108 PRK00522 tpx lipid hydroperoxi 99.4 1.2E-12 2.5E-17 96.7 9.9 94 54-149 24-151 (167)
109 cd03026 AhpF_NTD_C TRX-GRX-lik 99.4 1.9E-12 4.1E-17 85.7 9.9 72 74-150 11-82 (89)
110 KOG1731|consensus 99.4 1.9E-13 4.1E-18 114.6 5.2 113 54-168 36-157 (606)
111 cd03015 PRX_Typ2cys Peroxiredo 99.4 4E-12 8.6E-17 94.3 11.5 111 54-165 5-158 (173)
112 PRK09437 bcp thioredoxin-depen 99.4 4.2E-12 9E-17 92.3 10.6 105 54-161 10-150 (154)
113 PF00578 AhpC-TSA: AhpC/TSA fa 99.4 1E-12 2.3E-17 91.7 6.6 89 54-143 5-123 (124)
114 cd03018 PRX_AhpE_like Peroxire 99.4 6.2E-12 1.4E-16 90.7 10.0 107 54-161 7-148 (149)
115 smart00594 UAS UAS domain. 99.4 1.5E-11 3.2E-16 86.2 11.4 100 59-160 11-121 (122)
116 KOG0191|consensus 99.3 5.9E-12 1.3E-16 104.5 10.2 107 59-167 146-255 (383)
117 TIGR03137 AhpC peroxiredoxin. 99.3 2.1E-11 4.5E-16 91.6 11.5 90 74-163 30-155 (187)
118 cd02970 PRX_like2 Peroxiredoxi 99.3 2.5E-11 5.3E-16 87.3 9.4 93 55-147 3-148 (149)
119 COG4232 Thiol:disulfide interc 99.3 2.1E-11 4.5E-16 103.3 9.9 99 63-164 461-568 (569)
120 PRK10606 btuE putative glutath 99.3 4.2E-11 9E-16 89.5 9.8 61 54-116 5-66 (183)
121 COG0526 TrxA Thiol-disulfide i 99.3 2.7E-11 6E-16 82.2 7.9 85 75-161 32-121 (127)
122 cd02968 SCO SCO (an acronym fo 99.2 3.4E-11 7.3E-16 86.1 7.8 93 54-147 2-142 (142)
123 PRK13190 putative peroxiredoxi 99.2 2E-10 4.4E-15 87.3 12.3 101 74-174 26-164 (202)
124 cd02971 PRX_family Peroxiredox 99.2 6.9E-11 1.5E-15 84.2 9.1 95 55-150 3-131 (140)
125 PF13899 Thioredoxin_7: Thiore 99.2 2.5E-11 5.5E-16 79.1 6.3 65 72-137 14-81 (82)
126 KOG2501|consensus 99.2 4.8E-11 1E-15 85.6 7.3 72 72-143 30-130 (157)
127 PRK10382 alkyl hydroperoxide r 99.2 3.7E-10 8.1E-15 84.7 11.9 92 74-165 30-157 (187)
128 PRK15000 peroxidase; Provision 99.2 5.6E-10 1.2E-14 84.7 12.0 92 74-165 33-163 (200)
129 PRK13599 putative peroxiredoxi 99.2 5.5E-10 1.2E-14 85.6 11.6 111 54-165 8-157 (215)
130 COG2143 Thioredoxin-related pr 99.2 3.9E-10 8.5E-15 80.2 9.8 90 72-163 39-148 (182)
131 PRK13191 putative peroxiredoxi 99.1 1.1E-09 2.4E-14 84.0 11.4 110 54-164 13-161 (215)
132 PF02114 Phosducin: Phosducin; 99.1 7.7E-10 1.7E-14 87.1 10.2 106 56-163 125-237 (265)
133 PRK13189 peroxiredoxin; Provis 99.1 2.3E-09 5E-14 82.6 12.2 96 74-169 34-168 (222)
134 cd03016 PRX_1cys Peroxiredoxin 99.1 3.8E-09 8.2E-14 80.4 12.9 90 76-165 26-155 (203)
135 KOG0914|consensus 99.1 3.9E-10 8.5E-15 84.4 6.4 95 53-147 121-223 (265)
136 KOG3414|consensus 99.0 7.2E-09 1.6E-13 71.1 11.6 113 60-172 7-128 (142)
137 PF03190 Thioredox_DsbH: Prote 99.0 2.3E-09 5.1E-14 78.0 9.8 89 59-148 22-122 (163)
138 TIGR02196 GlrX_YruB Glutaredox 99.0 1.2E-09 2.5E-14 68.9 7.1 68 79-160 2-73 (74)
139 PTZ00137 2-Cys peroxiredoxin; 99.0 2E-08 4.3E-13 78.9 14.3 92 74-165 97-226 (261)
140 TIGR02200 GlrX_actino Glutared 99.0 1.6E-09 3.5E-14 69.2 6.9 58 79-143 2-64 (77)
141 PF14595 Thioredoxin_9: Thiore 99.0 2.4E-09 5.1E-14 75.6 8.2 73 74-147 40-116 (129)
142 PTZ00253 tryparedoxin peroxida 99.0 1E-08 2.2E-13 77.8 12.1 91 74-164 35-164 (199)
143 cd01659 TRX_superfamily Thiore 99.0 2.6E-09 5.6E-14 64.5 7.2 60 79-139 1-63 (69)
144 KOG1672|consensus 98.9 1.4E-09 3.1E-14 80.1 5.2 93 57-151 67-159 (211)
145 PF13192 Thioredoxin_3: Thiore 98.9 1.6E-08 3.4E-13 64.9 9.4 73 80-161 3-76 (76)
146 PF13728 TraF: F plasmid trans 98.9 2.6E-08 5.6E-13 76.4 11.5 82 74-159 119-213 (215)
147 cd02991 UAS_ETEA UAS family, E 98.9 4.3E-08 9.3E-13 68.0 10.5 92 72-166 14-115 (116)
148 PF06110 DUF953: Eukaryotic pr 98.9 2.9E-08 6.3E-13 68.8 9.3 77 63-139 4-99 (119)
149 TIGR02180 GRX_euk Glutaredoxin 98.8 1E-08 2.2E-13 66.5 6.4 60 79-142 1-65 (84)
150 PF02966 DIM1: Mitosis protein 98.8 2.3E-07 5E-12 64.5 11.9 110 60-170 4-123 (133)
151 COG1225 Bcp Peroxiredoxin [Pos 98.8 2E-07 4.3E-12 67.5 11.4 109 54-163 10-155 (157)
152 KOG0911|consensus 98.8 1E-08 2.2E-13 77.3 4.9 101 61-168 6-106 (227)
153 KOG0913|consensus 98.7 3.8E-09 8.3E-14 80.0 2.1 100 58-163 25-125 (248)
154 PRK11200 grxA glutaredoxin 1; 98.7 7E-08 1.5E-12 63.1 7.9 77 78-165 2-84 (85)
155 TIGR02739 TraF type-F conjugat 98.7 1.9E-07 4E-12 73.1 11.6 90 74-167 149-251 (256)
156 PRK13703 conjugal pilus assemb 98.6 4.9E-07 1.1E-11 70.4 11.0 91 75-167 143-244 (248)
157 PRK10877 protein disulfide iso 98.6 3.3E-07 7.2E-12 71.1 9.5 80 75-163 107-230 (232)
158 KOG3425|consensus 98.6 3.4E-07 7.5E-12 62.4 7.9 74 64-137 12-103 (128)
159 PF07449 HyaE: Hydrogenase-1 e 98.6 3.8E-07 8.3E-12 61.9 7.5 92 59-151 11-104 (107)
160 cd03023 DsbA_Com1_like DsbA fa 98.5 1.1E-06 2.5E-11 63.1 8.7 37 74-111 4-40 (154)
161 cd03020 DsbA_DsbC_DsbG DsbA fa 98.5 6.8E-07 1.5E-11 67.6 7.7 76 75-160 77-197 (197)
162 cd02976 NrdH NrdH-redoxin (Nrd 98.4 1.3E-06 2.8E-11 54.7 7.1 67 79-159 2-72 (73)
163 TIGR03143 AhpF_homolog putativ 98.4 2.6E-06 5.6E-11 74.2 11.2 79 75-160 475-554 (555)
164 PF13848 Thioredoxin_6: Thiore 98.4 5.3E-06 1.1E-10 61.5 10.7 101 59-162 79-184 (184)
165 PF11009 DUF2847: Protein of u 98.4 6.1E-06 1.3E-10 55.8 9.8 87 60-146 3-95 (105)
166 TIGR02183 GRXA Glutaredoxin, G 98.4 2E-06 4.2E-11 56.4 7.3 75 79-164 2-82 (86)
167 PRK11657 dsbG disulfide isomer 98.4 3E-06 6.5E-11 66.6 9.4 82 75-161 117-249 (251)
168 PF13462 Thioredoxin_4: Thiore 98.4 4.3E-06 9.4E-11 60.7 9.2 82 74-162 11-162 (162)
169 PF00462 Glutaredoxin: Glutare 98.3 2.9E-06 6.4E-11 51.5 6.9 56 79-142 1-60 (60)
170 cd03019 DsbA_DsbA DsbA family, 98.3 5.1E-06 1.1E-10 61.3 8.4 40 74-113 14-53 (178)
171 cd03419 GRX_GRXh_1_2_like Glut 98.3 3.8E-06 8.2E-11 54.1 6.3 58 79-142 2-64 (82)
172 TIGR02190 GlrX-dom Glutaredoxi 98.2 6.5E-06 1.4E-10 53.0 7.1 58 77-142 8-68 (79)
173 cd02983 P5_C P5 family, C-term 98.2 5.5E-05 1.2E-09 53.5 12.3 111 57-170 3-121 (130)
174 PRK10954 periplasmic protein d 98.2 7.6E-06 1.6E-10 62.4 8.0 40 75-114 37-79 (207)
175 PRK15317 alkyl hydroperoxide r 98.2 2E-05 4.3E-10 68.1 11.2 83 75-164 115-198 (517)
176 cd03013 PRX5_like Peroxiredoxi 98.2 2.6E-05 5.7E-10 56.8 9.8 76 74-149 28-141 (155)
177 PHA03050 glutaredoxin; Provisi 98.2 1.3E-05 2.9E-10 54.8 7.6 65 72-143 10-81 (108)
178 cd02066 GRX_family Glutaredoxi 98.1 1.3E-05 2.8E-10 49.7 6.4 57 79-143 2-62 (72)
179 TIGR03143 AhpF_homolog putativ 98.0 0.0001 2.2E-09 64.3 12.8 104 64-170 354-460 (555)
180 cd03072 PDI_b'_ERp44 PDIb' fam 98.0 7.5E-05 1.6E-09 51.3 9.3 99 63-166 5-110 (111)
181 TIGR03140 AhpF alkyl hydropero 98.0 8.7E-05 1.9E-09 64.1 11.4 82 76-164 118-199 (515)
182 TIGR02194 GlrX_NrdH Glutaredox 98.0 3.3E-05 7.1E-10 48.7 6.5 62 80-151 2-66 (72)
183 TIGR02181 GRX_bact Glutaredoxi 98.0 2E-05 4.4E-10 50.5 5.3 56 79-142 1-60 (79)
184 PF01216 Calsequestrin: Calseq 98.0 0.00012 2.6E-09 59.0 10.7 114 48-167 26-147 (383)
185 cd03029 GRX_hybridPRX5 Glutare 98.0 5.9E-05 1.3E-09 47.5 7.2 66 79-160 3-71 (72)
186 cd03418 GRX_GRXb_1_3_like Glut 97.9 6.3E-05 1.4E-09 47.5 7.1 56 79-142 2-62 (75)
187 PRK10329 glutaredoxin-like pro 97.9 0.00014 3E-09 47.1 8.7 71 79-163 3-76 (81)
188 TIGR02189 GlrX-like_plant Glut 97.9 3.9E-05 8.5E-10 51.6 6.0 57 79-143 10-73 (99)
189 cd02981 PDI_b_family Protein D 97.9 0.00023 5E-09 47.2 9.7 92 61-162 4-96 (97)
190 cd03027 GRX_DEP Glutaredoxin ( 97.9 0.00012 2.5E-09 46.2 7.2 57 79-143 3-63 (73)
191 cd03073 PDI_b'_ERp72_ERp57 PDI 97.8 0.00022 4.8E-09 49.0 8.6 73 88-163 31-110 (111)
192 PF05768 DUF836: Glutaredoxin- 97.8 7E-05 1.5E-09 48.4 5.8 78 79-161 2-81 (81)
193 COG0386 BtuE Glutathione perox 97.8 0.00034 7.4E-09 50.2 9.0 108 54-165 5-161 (162)
194 cd02972 DsbA_family DsbA famil 97.7 0.00014 3E-09 47.6 6.4 58 79-136 1-90 (98)
195 PF00837 T4_deiodinase: Iodoth 97.7 0.00044 9.6E-09 53.3 9.6 108 54-163 79-236 (237)
196 KOG3170|consensus 97.7 0.00032 7E-09 52.4 8.2 100 60-163 94-200 (240)
197 TIGR00365 monothiol glutaredox 97.7 0.00046 1E-08 46.2 8.2 51 85-143 25-79 (97)
198 COG1331 Highly conserved prote 97.6 0.00043 9.3E-09 60.5 9.6 87 56-143 25-123 (667)
199 KOG2603|consensus 97.6 0.00043 9.3E-09 55.1 8.4 111 54-168 38-170 (331)
200 KOG3171|consensus 97.6 0.00021 4.5E-09 54.0 6.0 108 54-163 136-250 (273)
201 cd03028 GRX_PICOT_like Glutare 97.6 0.00048 1E-08 45.4 7.2 50 85-142 21-74 (90)
202 PRK10638 glutaredoxin 3; Provi 97.6 0.00036 7.8E-09 45.2 6.4 57 79-143 4-64 (83)
203 COG0695 GrxC Glutaredoxin and 97.5 0.00044 9.4E-09 44.6 6.5 56 79-142 3-64 (80)
204 PRK10824 glutaredoxin-4; Provi 97.4 0.0011 2.3E-08 45.8 7.3 51 85-143 28-82 (115)
205 KOG1752|consensus 97.3 0.0017 3.8E-08 43.9 6.9 59 79-143 16-79 (104)
206 PTZ00062 glutaredoxin; Provisi 97.2 0.002 4.2E-08 49.1 7.7 52 84-143 125-180 (204)
207 PF13743 Thioredoxin_5: Thiore 97.2 0.0017 3.6E-08 48.3 6.7 33 81-113 2-34 (176)
208 COG1999 Uncharacterized protei 97.2 0.0055 1.2E-07 46.8 9.6 108 56-166 49-206 (207)
209 PF02630 SCO1-SenC: SCO1/SenC; 97.1 0.0033 7.1E-08 46.6 7.4 64 53-117 31-98 (174)
210 cd03067 PDI_b_PDIR_N PDIb fami 97.0 0.0095 2.1E-07 39.8 8.2 98 60-161 5-109 (112)
211 PF07912 ERp29_N: ERp29, N-ter 97.0 0.017 3.7E-07 40.0 9.6 100 62-164 9-119 (126)
212 PF01323 DSBA: DSBA-like thior 96.9 0.013 2.8E-07 43.6 9.7 37 78-114 1-38 (193)
213 PRK12759 bifunctional gluaredo 96.9 0.0035 7.5E-08 52.8 6.7 56 79-142 4-71 (410)
214 COG1651 DsbG Protein-disulfide 96.8 0.013 2.7E-07 45.6 9.0 38 120-164 206-243 (244)
215 COG0450 AhpC Peroxiredoxin [Po 96.6 0.035 7.6E-07 41.6 9.8 91 75-165 33-162 (194)
216 cd03066 PDI_b_Calsequestrin_mi 96.6 0.068 1.5E-06 35.8 10.3 95 60-163 4-100 (102)
217 KOG1651|consensus 96.4 0.022 4.9E-07 41.5 7.5 109 54-165 14-170 (171)
218 PF13848 Thioredoxin_6: Thiore 96.3 0.036 7.8E-07 40.7 8.3 69 92-166 7-77 (184)
219 cd03069 PDI_b_ERp57 PDIb famil 96.1 0.11 2.5E-06 34.9 9.3 90 61-163 5-103 (104)
220 COG2761 FrnE Predicted dithiol 95.9 0.12 2.6E-06 39.8 9.7 44 121-170 176-219 (225)
221 cd03031 GRX_GRX_like Glutaredo 95.9 0.042 9.2E-07 39.6 6.9 56 80-143 3-72 (147)
222 KOG2792|consensus 95.7 0.054 1.2E-06 42.3 6.9 108 55-165 120-276 (280)
223 cd02978 KaiB_like KaiB-like fa 95.6 0.07 1.5E-06 33.5 6.0 59 78-136 3-62 (72)
224 KOG2640|consensus 95.6 0.0038 8.3E-08 49.8 0.4 88 75-165 76-163 (319)
225 KOG2507|consensus 95.3 0.18 3.9E-06 42.1 9.2 90 73-164 16-111 (506)
226 cd02990 UAS_FAF1 UAS family, F 95.2 0.74 1.6E-05 32.7 11.1 88 74-164 20-133 (136)
227 cd02974 AhpF_NTD_N Alkyl hydro 95.1 0.56 1.2E-05 31.1 10.7 85 65-164 8-94 (94)
228 KOG0855|consensus 94.8 0.15 3.2E-06 37.4 6.5 78 54-131 69-169 (211)
229 PRK15317 alkyl hydroperoxide r 94.4 0.76 1.6E-05 39.9 11.3 91 65-169 8-99 (517)
230 TIGR03140 AhpF alkyl hydropero 94.2 0.91 2E-05 39.4 11.4 93 65-170 8-101 (515)
231 COG3019 Predicted metal-bindin 93.7 0.78 1.7E-05 32.6 8.1 74 78-164 27-104 (149)
232 TIGR02654 circ_KaiB circadian 93.1 0.43 9.3E-06 31.1 5.6 74 77-151 4-78 (87)
233 PRK09301 circadian clock prote 93.0 0.42 9E-06 32.2 5.6 76 75-151 5-81 (103)
234 cd03040 GST_N_mPGES2 GST_N fam 92.8 1.2 2.6E-05 27.7 7.5 73 80-165 3-77 (77)
235 cd03041 GST_N_2GST_N GST_N fam 92.6 1.3 2.7E-05 27.8 7.3 72 80-163 3-76 (77)
236 cd03060 GST_N_Omega_like GST_N 92.5 0.75 1.6E-05 28.2 6.1 58 80-142 2-60 (71)
237 cd03068 PDI_b_ERp72 PDIb famil 92.3 2.5 5.3E-05 28.6 11.0 95 60-162 4-106 (107)
238 cd00570 GST_N_family Glutathio 91.9 0.97 2.1E-05 26.7 6.1 56 81-142 3-60 (71)
239 PF06491 Disulph_isomer: Disul 91.9 1.6 3.4E-05 30.7 7.4 103 60-163 20-131 (136)
240 PF04592 SelP_N: Selenoprotein 91.6 1.8 3.9E-05 33.6 8.2 43 73-115 24-70 (238)
241 TIGR02742 TrbC_Ftype type-F co 91.6 0.44 9.5E-06 33.6 4.6 23 118-140 60-82 (130)
242 PF00255 GSHPx: Glutathione pe 91.4 0.26 5.6E-06 33.6 3.2 59 57-117 4-63 (108)
243 cd03037 GST_N_GRX2 GST_N famil 91.1 1.2 2.6E-05 27.2 5.9 56 81-141 3-58 (71)
244 cd02977 ArsC_family Arsenate R 91.0 0.3 6.5E-06 32.8 3.2 57 80-142 2-63 (105)
245 PHA03075 glutaredoxin-like pro 90.2 0.6 1.3E-05 32.0 4.0 30 76-105 2-31 (123)
246 COG4545 Glutaredoxin-related p 90.2 0.86 1.9E-05 28.8 4.4 56 80-142 5-76 (85)
247 cd03051 GST_N_GTT2_like GST_N 90.1 1.5 3.3E-05 26.6 5.8 55 81-140 3-61 (74)
248 COG3531 Predicted protein-disu 89.8 0.68 1.5E-05 34.9 4.4 44 120-165 165-210 (212)
249 PF13417 GST_N_3: Glutathione 89.6 3.4 7.4E-05 25.6 8.2 71 82-166 2-73 (75)
250 TIGR01617 arsC_related transcr 89.1 0.74 1.6E-05 31.6 4.0 34 80-119 2-35 (117)
251 cd03036 ArsC_like Arsenate Red 88.9 0.61 1.3E-05 31.8 3.5 56 80-141 2-62 (111)
252 PRK01655 spxA transcriptional 88.9 0.79 1.7E-05 32.3 4.1 33 79-117 2-34 (131)
253 PF13778 DUF4174: Domain of un 88.7 5.8 0.00013 27.3 8.3 87 74-163 9-111 (118)
254 cd03035 ArsC_Yffb Arsenate Red 88.6 0.66 1.4E-05 31.4 3.4 42 80-127 2-50 (105)
255 PF06053 DUF929: Domain of unk 88.1 2 4.3E-05 33.8 6.2 57 72-136 55-112 (249)
256 PF09673 TrbC_Ftype: Type-F co 87.6 3 6.5E-05 28.5 6.2 21 118-138 60-80 (113)
257 PF04134 DUF393: Protein of un 87.4 3.5 7.6E-05 27.8 6.6 57 82-140 2-61 (114)
258 PF07689 KaiB: KaiB domain; I 87.4 0.38 8.2E-06 31.1 1.6 54 82-135 3-57 (82)
259 cd03074 PDI_b'_Calsequestrin_C 86.9 7.7 0.00017 26.4 10.6 90 75-164 20-120 (120)
260 cd03024 DsbA_FrnE DsbA family, 85.5 0.9 1.9E-05 33.9 3.0 36 119-160 165-200 (201)
261 cd03045 GST_N_Delta_Epsilon GS 84.8 4.7 0.0001 24.6 5.7 56 80-141 2-61 (74)
262 COG3634 AhpF Alkyl hydroperoxi 84.4 5.6 0.00012 33.1 7.1 81 75-162 116-196 (520)
263 PRK12559 transcriptional regul 84.1 2 4.3E-05 30.3 4.0 21 79-99 2-22 (131)
264 KOG0852|consensus 83.4 16 0.00036 27.2 10.6 91 74-164 32-161 (196)
265 cd03032 ArsC_Spx Arsenate Redu 83.2 2.6 5.5E-05 28.8 4.3 33 79-117 2-34 (115)
266 cd03025 DsbA_FrnE_like DsbA fa 82.7 2 4.4E-05 31.7 3.9 28 79-106 3-30 (193)
267 cd03059 GST_N_SspA GST_N famil 81.0 2.6 5.7E-05 25.6 3.4 51 80-134 2-53 (73)
268 cd03055 GST_N_Omega GST_N fami 80.7 8.9 0.00019 24.6 6.0 58 79-141 19-77 (89)
269 cd03022 DsbA_HCCA_Iso DsbA fam 80.6 1.8 3.9E-05 31.9 3.0 34 120-160 158-191 (192)
270 PRK13344 spxA transcriptional 79.3 3.8 8.2E-05 28.9 4.1 32 79-116 2-33 (132)
271 PF09822 ABC_transp_aux: ABC-t 78.8 30 0.00065 27.2 12.5 55 75-129 24-88 (271)
272 PF09695 YtfJ_HI0045: Bacteria 78.5 23 0.0005 25.9 7.9 87 74-162 36-156 (160)
273 PF06953 ArsD: Arsenical resis 78.0 9.9 0.00021 26.5 5.7 53 107-164 40-102 (123)
274 COG2077 Tpx Peroxiredoxin [Pos 76.3 9.5 0.00021 27.6 5.3 64 51-116 21-85 (158)
275 KOG2244|consensus 75.0 8 0.00017 33.9 5.5 81 61-142 99-191 (786)
276 COG3011 Predicted thiol-disulf 73.7 24 0.00053 25.1 6.8 67 75-143 6-74 (137)
277 PRK13730 conjugal transfer pil 73.1 6.7 0.00015 29.8 4.1 33 118-151 151-183 (212)
278 cd03061 GST_N_CLIC GST_N famil 71.9 25 0.00055 23.0 6.9 69 84-166 19-88 (91)
279 COG5429 Uncharacterized secret 71.1 13 0.00027 29.0 5.2 85 78-169 44-146 (261)
280 cd03056 GST_N_4 GST_N family, 69.1 8.8 0.00019 23.1 3.5 56 81-142 3-62 (73)
281 PRK00366 ispG 4-hydroxy-3-meth 62.3 11 0.00024 31.1 3.7 78 84-163 271-356 (360)
282 cd03025 DsbA_FrnE_like DsbA fa 61.0 9.4 0.0002 28.0 2.9 21 120-140 160-180 (193)
283 COG0821 gcpE 1-hydroxy-2-methy 60.6 12 0.00027 30.7 3.6 44 123-168 310-355 (361)
284 PF07315 DUF1462: Protein of u 59.8 47 0.001 21.8 7.7 68 87-160 9-92 (93)
285 cd03021 DsbA_GSTK DsbA family, 57.9 11 0.00024 28.4 2.9 38 120-160 170-208 (209)
286 PF06764 DUF1223: Protein of u 57.5 83 0.0018 23.9 8.1 77 81-166 4-100 (202)
287 KOG1364|consensus 56.5 24 0.00051 29.1 4.6 57 108-166 133-191 (356)
288 cd03052 GST_N_GDAP1 GST_N fami 55.9 45 0.00098 20.4 6.7 57 80-142 2-62 (73)
289 TIGR02743 TraW type-F conjugat 55.5 29 0.00063 26.4 4.7 40 97-142 158-197 (202)
290 cd03033 ArsC_15kD Arsenate Red 52.7 18 0.0004 24.6 3.0 21 79-99 2-22 (113)
291 TIGR00014 arsC arsenate reduct 51.8 37 0.00081 23.0 4.5 20 80-99 2-21 (114)
292 PF05988 DUF899: Bacterial pro 50.1 1.2E+02 0.0025 23.4 8.5 93 57-149 49-176 (211)
293 COG5494 Predicted thioredoxin/ 48.8 1.2E+02 0.0026 23.5 6.9 73 81-163 15-87 (265)
294 PF08806 Sep15_SelM: Sep15/Sel 47.9 29 0.00063 22.1 3.1 35 129-164 41-76 (78)
295 PF00352 TBP: Transcription fa 47.8 28 0.0006 22.3 3.1 75 78-164 5-79 (86)
296 PF04551 GcpE: GcpE protein; 46.4 19 0.0004 29.9 2.5 75 87-163 271-358 (359)
297 KOG4079|consensus 46.0 20 0.00044 25.4 2.4 39 128-168 72-111 (169)
298 PRK09481 sspA stringent starva 45.4 83 0.0018 23.5 5.9 62 75-142 7-69 (211)
299 TIGR00612 ispG_gcpE 1-hydroxy- 44.9 92 0.002 25.8 6.3 66 82-147 260-334 (346)
300 cd00652 TBP_TLF TATA box bindi 44.8 39 0.00086 25.0 3.9 29 132-164 141-169 (174)
301 PRK13738 conjugal transfer pil 43.6 66 0.0014 24.6 5.0 40 98-142 157-197 (209)
302 cd03022 DsbA_HCCA_Iso DsbA fam 41.8 52 0.0011 23.9 4.3 33 81-113 3-35 (192)
303 cd00307 RuBisCO_small_like Rib 41.0 40 0.00088 21.8 3.0 35 82-116 28-71 (84)
304 COG1393 ArsC Arsenate reductas 41.0 37 0.00081 23.3 3.1 21 79-99 3-23 (117)
305 cd03053 GST_N_Phi GST_N family 40.9 81 0.0017 18.9 5.7 57 79-141 2-62 (76)
306 PF05176 ATP-synt_10: ATP10 pr 39.5 1.9E+02 0.0041 22.8 7.2 106 54-161 101-247 (252)
307 KOG0406|consensus 38.1 1.1E+02 0.0025 23.8 5.6 59 75-142 8-69 (231)
308 KOG1371|consensus 38.0 1.9E+02 0.0041 23.9 7.0 65 66-136 18-84 (343)
309 COG3411 Ferredoxin [Energy pro 37.6 97 0.0021 18.9 4.6 35 130-170 17-51 (64)
310 TIGR02652 conserved hypothetic 37.3 12 0.00027 26.6 0.2 13 86-98 11-23 (163)
311 PF09654 DUF2396: Protein of u 37.3 12 0.00026 26.6 0.2 13 86-98 8-20 (161)
312 cd03034 ArsC_ArsC Arsenate Red 35.7 38 0.00083 22.8 2.5 20 80-99 2-21 (112)
313 PF04908 SH3BGR: SH3-binding, 34.2 33 0.00071 22.9 1.9 41 80-120 3-44 (99)
314 COG2101 SPT15 TATA-box binding 33.2 62 0.0014 24.1 3.3 31 132-166 55-85 (185)
315 KOG2868|consensus 33.0 1.3E+02 0.0028 24.7 5.3 39 129-167 94-133 (335)
316 cd03030 GRX_SH3BGR Glutaredoxi 31.5 1.5E+02 0.0033 19.3 5.8 35 107-143 30-72 (92)
317 PRK10387 glutaredoxin 2; Provi 31.3 2E+02 0.0043 21.2 6.0 55 82-141 4-58 (210)
318 PF07511 DUF1525: Protein of u 30.9 1E+02 0.0023 21.1 3.9 15 122-136 76-90 (114)
319 PF10865 DUF2703: Domain of un 30.8 1E+02 0.0022 21.4 3.9 56 85-145 13-75 (120)
320 PF07700 HNOB: Heme NO binding 29.8 1.6E+02 0.0036 21.3 5.2 41 76-116 128-169 (171)
321 KOG1422|consensus 29.0 2.7E+02 0.0059 21.5 6.7 69 86-168 20-89 (221)
322 COG1908 FrhD Coenzyme F420-red 28.7 1.1E+02 0.0024 21.3 3.7 39 77-117 1-39 (132)
323 COG4604 CeuD ABC-type enteroch 28.5 1.9E+02 0.0041 22.4 5.3 49 87-143 168-216 (252)
324 PLN00062 TATA-box-binding prot 27.5 1E+02 0.0023 22.9 3.8 29 132-164 140-168 (179)
325 KOG3360|consensus 27.4 1.3E+02 0.0029 20.0 3.8 44 120-167 29-73 (98)
326 cd04518 TBP_archaea archaeal T 27.1 1E+02 0.0022 22.8 3.7 29 132-164 140-168 (174)
327 PF10589 NADH_4Fe-4S: NADH-ubi 26.9 31 0.00068 19.4 0.7 21 85-105 17-37 (46)
328 PF09936 Methyltrn_RNA_4: SAM- 26.8 86 0.0019 23.5 3.1 26 62-87 119-144 (185)
329 PRK10026 arsenate reductase; P 26.7 82 0.0018 22.5 3.0 21 79-99 4-24 (141)
330 KOG1731|consensus 26.6 90 0.002 27.7 3.7 52 120-174 228-279 (606)
331 PRK00394 transcription factor; 26.6 1.1E+02 0.0023 22.8 3.7 29 132-164 141-169 (179)
332 TIGR01616 nitro_assoc nitrogen 26.5 93 0.002 21.6 3.2 22 78-99 2-23 (126)
333 PF03960 ArsC: ArsC family; I 26.4 1.3E+02 0.0029 19.9 3.9 31 82-118 1-31 (110)
334 cd04516 TBP_eukaryotes eukaryo 26.1 1.2E+02 0.0025 22.5 3.8 29 132-164 140-168 (174)
335 PRK10853 putative reductase; P 25.9 80 0.0017 21.6 2.7 21 79-99 2-22 (118)
336 PF09499 RE_ApaLI: ApaLI-like 25.9 2.9E+02 0.0062 20.7 5.8 44 66-109 133-177 (191)
337 cd03049 GST_N_3 GST_N family, 25.6 1.5E+02 0.0033 17.5 5.2 58 81-141 3-61 (73)
338 PF11211 DUF2997: Protein of u 25.1 1.4E+02 0.0031 17.0 3.8 37 134-170 4-40 (48)
339 COG4752 Uncharacterized protei 24.7 1.1E+02 0.0023 22.3 3.2 29 62-90 120-148 (190)
340 PF03227 GILT: Gamma interfero 24.6 2.2E+02 0.0048 18.9 4.8 29 79-107 3-34 (108)
341 PF14424 Toxin-deaminase: The 24.2 2.6E+02 0.0056 19.7 5.6 24 80-106 99-124 (133)
342 PF11287 DUF3088: Protein of u 23.9 1.3E+02 0.0029 20.5 3.4 49 87-136 24-75 (112)
343 KOG4277|consensus 23.8 4.1E+02 0.009 21.8 8.5 95 57-163 134-230 (468)
344 PHA02131 hypothetical protein 23.7 1.7E+02 0.0037 17.3 3.4 24 128-151 27-50 (70)
345 cd04517 TLF TBP-like factors ( 23.3 1.3E+02 0.0028 22.2 3.6 29 132-164 141-169 (174)
346 cd03024 DsbA_FrnE DsbA family, 23.2 1.5E+02 0.0032 21.7 4.1 25 81-105 3-27 (201)
347 COG0525 ValS Valyl-tRNA synthe 23.1 1.1E+02 0.0025 28.7 3.8 30 84-113 172-201 (877)
348 TIGR03757 conj_TIGR03757 integ 22.7 1.8E+02 0.0039 20.0 3.9 15 122-136 77-91 (113)
349 COG3531 Predicted protein-disu 21.9 1.3E+02 0.0029 22.9 3.4 27 78-104 3-29 (212)
350 PRK11752 putative S-transferas 21.5 3.3E+02 0.0072 21.3 5.9 56 80-135 45-106 (264)
351 cd03058 GST_N_Tau GST_N family 21.1 2E+02 0.0043 17.1 6.2 55 81-141 3-59 (74)
352 PLN02182 cytidine deaminase 21.0 46 0.001 27.4 0.9 14 84-97 129-142 (339)
353 cd03054 GST_N_Metaxin GST_N fa 20.7 77 0.0017 18.9 1.7 46 84-141 13-58 (72)
354 TIGR02182 GRXB Glutaredoxin, G 20.5 3.7E+02 0.008 20.0 5.9 55 82-141 3-57 (209)
355 cd03021 DsbA_GSTK DsbA family, 20.4 2.7E+02 0.0058 20.8 5.0 37 79-115 3-39 (209)
356 PRK12411 cytidine deaminase; P 20.4 55 0.0012 23.0 1.1 12 86-97 85-96 (132)
No 1
>KOG0910|consensus
Probab=99.95 E-value=1e-27 Score=169.52 Aligned_cols=108 Identities=42% Similarity=0.795 Sum_probs=103.1
Q ss_pred CCeEEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEE
Q psy17832 56 STSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIR 135 (189)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~ 135 (189)
...+...+..+|+..+.+++.||+|+|||+||+||+.+.|.|+++..+|.+++.|+.||.|+..+++.+|+|.++||+++
T Consensus 42 ~~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlv 121 (150)
T KOG0910|consen 42 ATLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLV 121 (150)
T ss_pred cccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEE
Confidence 44667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCeeEEEEecCCcCcHHHHHHHHHHhcC
Q psy17832 136 MKDGREQDRFVGFQKSNLEELEAFVTNAEK 165 (189)
Q Consensus 136 ~~~G~~~~~~~G~~~~~~~~l~~~l~~~l~ 165 (189)
|++|+.+.++.|..+. +.|.++|++.++
T Consensus 122 fknGe~~d~~vG~~~~--~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 122 FKNGEKVDRFVGAVPK--EQLRSLIKKFLK 149 (150)
T ss_pred EECCEEeeeecccCCH--HHHHHHHHHHhc
Confidence 9999999999999999 999999999875
No 2
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.93 E-value=9.4e-25 Score=149.95 Aligned_cols=101 Identities=16% Similarity=0.254 Sum_probs=88.7
Q ss_pred HHHHHHHHHh-CCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeE
Q psy17832 64 QKEFEAKVKQ-ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQ 142 (189)
Q Consensus 64 ~~~~~~~~~~-~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~ 142 (189)
.++|+..+.. .++++||+|||+||++|+.+.|.|++++++|++.+.|++||+|+.++++.+|+|.++||+++|++|+.+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEE
Confidence 5778887664 688999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEecCCcC--------cHHHHHHHHHHhc
Q psy17832 143 DRFVGFQKS--------NLEELEAFVTNAE 164 (189)
Q Consensus 143 ~~~~G~~~~--------~~~~l~~~l~~~l 164 (189)
.+..|..+. +.+.+++.+..+.
T Consensus 82 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (114)
T cd02954 82 KIDLGTGNNNKINWVFEDKQEFIDIIETIY 111 (114)
T ss_pred EEEcCCCCCceEEEecCcHHHHHHHHHHHh
Confidence 999987654 3466666665543
No 3
>PHA02278 thioredoxin-like protein
Probab=99.92 E-value=6.5e-24 Score=144.38 Aligned_cols=94 Identities=18% Similarity=0.328 Sum_probs=83.0
Q ss_pred CHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCcc----HhHHHhCCCccccEEEEEeC
Q psy17832 63 DQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM----TDLAMDYQVSSVPVLIRMKD 138 (189)
Q Consensus 63 ~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~----~~~~~~~~v~~~Pt~~~~~~ 138 (189)
+.++|...+ .+++++||+|||+||++|+.+.|.|+++++++..++.|+.||+|.+ ++++++|+|.++||+++|++
T Consensus 3 ~~~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 3 SLVDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred CHHHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence 567888875 6789999999999999999999999999988766678999999976 68999999999999999999
Q ss_pred CeeEEEEecCCcCcHHHHHHH
Q psy17832 139 GREQDRFVGFQKSNLEELEAF 159 (189)
Q Consensus 139 G~~~~~~~G~~~~~~~~l~~~ 159 (189)
|+.+.++.|..+. +.|.++
T Consensus 82 G~~v~~~~G~~~~--~~l~~~ 100 (103)
T PHA02278 82 GQLVKKYEDQVTP--MQLQEL 100 (103)
T ss_pred CEEEEEEeCCCCH--HHHHhh
Confidence 9999999998777 666553
No 4
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.91 E-value=9.4e-24 Score=144.02 Aligned_cols=95 Identities=21% Similarity=0.283 Sum_probs=84.0
Q ss_pred CHHHHHHHHHh-CCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccH---hHHHhCCCccccEEEEEeC
Q psy17832 63 DQKEFEAKVKQ-ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT---DLAMDYQVSSVPVLIRMKD 138 (189)
Q Consensus 63 ~~~~~~~~~~~-~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~~~~~~~v~~~Pt~~~~~~ 138 (189)
+.++|.+.+.. ++++|||+||++||++|+.++|.|+++++++ .++.|+.||+|++. +++++|+|+++||++||++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence 56788888765 4899999999999999999999999999999 68999999999874 7999999999999999999
Q ss_pred CeeEEEEecCCcCcHHHHHHHHH
Q psy17832 139 GREQDRFVGFQKSNLEELEAFVT 161 (189)
Q Consensus 139 G~~~~~~~G~~~~~~~~l~~~l~ 161 (189)
|+++.++.|..+. +|...+.
T Consensus 81 G~~v~~~~G~~~~---~l~~~~~ 100 (103)
T cd02985 81 GEKIHEEEGIGPD---ELIGDVL 100 (103)
T ss_pred CeEEEEEeCCCHH---HHHHHHH
Confidence 9999999997765 6655554
No 5
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.8e-24 Score=166.30 Aligned_cols=106 Identities=36% Similarity=0.671 Sum_probs=99.8
Q ss_pred EEecCHHHHHHHHHh--CCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEE
Q psy17832 59 FQITDQKEFEAKVKQ--ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRM 136 (189)
Q Consensus 59 ~~~~~~~~~~~~~~~--~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 136 (189)
+..++..+|...+.. ..+||||+||+|||++|+++.|.|+++..+|++++.+++||||..+.++..|||+++||++.|
T Consensus 25 I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af 104 (304)
T COG3118 25 IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAF 104 (304)
T ss_pred ceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEe
Confidence 556678999987765 366999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeeEEEEecCCcCcHHHHHHHHHHhcCC
Q psy17832 137 KDGREQDRFVGFQKSNLEELEAFVTNAEKP 166 (189)
Q Consensus 137 ~~G~~~~~~~G~~~~~~~~l~~~l~~~l~~ 166 (189)
++|+.+..|.|..+. +.+++||++++..
T Consensus 105 ~dGqpVdgF~G~qPe--sqlr~~ld~~~~~ 132 (304)
T COG3118 105 KDGQPVDGFQGAQPE--SQLRQFLDKVLPA 132 (304)
T ss_pred eCCcCccccCCCCcH--HHHHHHHHHhcCh
Confidence 999999999999999 9999999999977
No 6
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.91 E-value=8.9e-24 Score=147.06 Aligned_cols=102 Identities=13% Similarity=0.145 Sum_probs=94.4
Q ss_pred ecCHHHHHHHHHhCCCcEEEEEecCCChh--hh--hhhHHHHHHHHHc--cCceEEEEEEcCccHhHHHhCCCccccEEE
Q psy17832 61 ITDQKEFEAKVKQASTPVIVDFFAKWCDP--CK--LMAPCLEAIVERM--NGKVQLAKVDVDLMTDLAMDYQVSSVPVLI 134 (189)
Q Consensus 61 ~~~~~~~~~~~~~~~k~vvv~f~a~wC~~--C~--~~~p~l~~l~~~~--~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~ 134 (189)
.++.++|++.+..++.++|++||+.||++ |+ .+.|.+.+++.++ .+++.|++||+|++++++++|+|+++||++
T Consensus 13 ~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPTl~ 92 (120)
T cd03065 13 DLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDSIY 92 (120)
T ss_pred eCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccccEEE
Confidence 34679999998889999999999999987 99 8899999999998 778999999999999999999999999999
Q ss_pred EEeCCeeEEEEecCCcCcHHHHHHHHHHhcC
Q psy17832 135 RMKDGREQDRFVGFQKSNLEELEAFVTNAEK 165 (189)
Q Consensus 135 ~~~~G~~~~~~~G~~~~~~~~l~~~l~~~l~ 165 (189)
+|++|+++. +.|..+. +.|..||.+++.
T Consensus 93 lfk~G~~v~-~~G~~~~--~~l~~~l~~~~~ 120 (120)
T cd03065 93 VFKDDEVIE-YDGEFAA--DTLVEFLLDLIE 120 (120)
T ss_pred EEECCEEEE-eeCCCCH--HHHHHHHHHHhC
Confidence 999999887 9999999 999999998763
No 7
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.91 E-value=1.2e-23 Score=145.39 Aligned_cols=103 Identities=12% Similarity=0.207 Sum_probs=90.1
Q ss_pred CCCCeEEecCHHHHHHHH--HhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHH-HhCCCccc
Q psy17832 54 APSTSFQITDQKEFEAKV--KQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLA-MDYQVSSV 130 (189)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~--~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~-~~~~v~~~ 130 (189)
....++++ +.++|...+ ..+++++||+|||+||++|+.+.|.|+++++.+++.+.|+.||++.+.+++ ++|+|.++
T Consensus 7 ~~~~v~~l-~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~ 85 (113)
T cd03006 7 QRSPVLDF-YKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYF 85 (113)
T ss_pred CCCCeEEe-chhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCccc
Confidence 34445554 678888753 467999999999999999999999999999999988999999999999999 58999999
Q ss_pred cEEEEEeCCeeEEEEecCCcCcHHHHHHH
Q psy17832 131 PVLIRMKDGREQDRFVGFQKSNLEELEAF 159 (189)
Q Consensus 131 Pt~~~~~~G~~~~~~~G~~~~~~~~l~~~ 159 (189)
||+++|++|+...++.|..+. +.|..|
T Consensus 86 PTl~lf~~g~~~~~y~G~~~~--~~i~~~ 112 (113)
T cd03006 86 PVIHLYYRSRGPIEYKGPMRA--PYMEKF 112 (113)
T ss_pred CEEEEEECCccceEEeCCCCH--HHHHhh
Confidence 999999999988899999888 887765
No 8
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.91 E-value=8.4e-24 Score=144.30 Aligned_cols=99 Identities=22% Similarity=0.538 Sum_probs=89.9
Q ss_pred EecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCC
Q psy17832 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDG 139 (189)
Q Consensus 60 ~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G 139 (189)
..++.++|+..+...+++++|+||++||++|+.+.|.|+++++++.+.+.|+.||+++..+++++|+|+++||+++|++|
T Consensus 4 ~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 4 ITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred eEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCC
Confidence 34578899998877888999999999999999999999999999988899999999999999999999999999999776
Q ss_pred -eeEEEEecCCc-CcHHHHHHHH
Q psy17832 140 -REQDRFVGFQK-SNLEELEAFV 160 (189)
Q Consensus 140 -~~~~~~~G~~~-~~~~~l~~~l 160 (189)
+.+.++.|..+ . ++|..||
T Consensus 84 ~~~~~~~~G~~~~~--~~l~~~i 104 (104)
T cd03004 84 ASKYHSYNGWHRDA--DSILEFI 104 (104)
T ss_pred CCCceEccCCCCCH--HHHHhhC
Confidence 88899999876 7 7887764
No 9
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.91 E-value=2.1e-23 Score=141.43 Aligned_cols=101 Identities=36% Similarity=0.714 Sum_probs=94.9
Q ss_pred ecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCe
Q psy17832 61 ITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGR 140 (189)
Q Consensus 61 ~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~ 140 (189)
.++.++|+..+..+++++||+||++||++|+.+.|.|+++++.+++++.|+.||+++..+++++|+|.++||+++|++|+
T Consensus 3 ~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~ 82 (103)
T PF00085_consen 3 VLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGK 82 (103)
T ss_dssp EESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTE
T ss_pred ECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCc
Confidence 45778999987777899999999999999999999999999999989999999999999999999999999999999999
Q ss_pred eEEEEecCCcCcHHHHHHHHHHh
Q psy17832 141 EQDRFVGFQKSNLEELEAFVTNA 163 (189)
Q Consensus 141 ~~~~~~G~~~~~~~~l~~~l~~~ 163 (189)
...++.|..+. +.|.+||++.
T Consensus 83 ~~~~~~g~~~~--~~l~~~i~~~ 103 (103)
T PF00085_consen 83 EVKRYNGPRNA--ESLIEFIEKH 103 (103)
T ss_dssp EEEEEESSSSH--HHHHHHHHHH
T ss_pred EEEEEECCCCH--HHHHHHHHcC
Confidence 99999999888 9999999874
No 10
>PRK09381 trxA thioredoxin; Provisional
Probab=99.91 E-value=3.3e-23 Score=142.57 Aligned_cols=103 Identities=30% Similarity=0.635 Sum_probs=95.2
Q ss_pred ecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCe
Q psy17832 61 ITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGR 140 (189)
Q Consensus 61 ~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~ 140 (189)
.+++++|.+.+...+++++|+||++||++|+.+.|.|+++++++.+++.|+.+|++....++++|+|.++||+++|++|+
T Consensus 7 ~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~ 86 (109)
T PRK09381 7 HLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 86 (109)
T ss_pred eeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEEeCCe
Confidence 34678998877777899999999999999999999999999999988999999999999999999999999999999999
Q ss_pred eEEEEecCCcCcHHHHHHHHHHhcC
Q psy17832 141 EQDRFVGFQKSNLEELEAFVTNAEK 165 (189)
Q Consensus 141 ~~~~~~G~~~~~~~~l~~~l~~~l~ 165 (189)
++.++.|..+. +.|..+|++.|.
T Consensus 87 ~~~~~~G~~~~--~~l~~~i~~~~~ 109 (109)
T PRK09381 87 VAATKVGALSK--GQLKEFLDANLA 109 (109)
T ss_pred EEEEecCCCCH--HHHHHHHHHhcC
Confidence 99999999887 899999998763
No 11
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.91 E-value=1.5e-23 Score=142.45 Aligned_cols=97 Identities=24% Similarity=0.444 Sum_probs=88.0
Q ss_pred EecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCC
Q psy17832 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDG 139 (189)
Q Consensus 60 ~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G 139 (189)
..++.++|+..+ ..++++||+||++||++|+.+.|.|+++++++++.+.|+.||+++.+.++++|+|+++||+++|++|
T Consensus 4 ~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 82 (101)
T cd03003 4 VTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSG 82 (101)
T ss_pred EEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCC
Confidence 445788999875 5668999999999999999999999999999998899999999999999999999999999999999
Q ss_pred eeEEEEecCCcCcHHHHHHH
Q psy17832 140 REQDRFVGFQKSNLEELEAF 159 (189)
Q Consensus 140 ~~~~~~~G~~~~~~~~l~~~ 159 (189)
+.+.++.|..+. +.|..|
T Consensus 83 ~~~~~~~G~~~~--~~l~~f 100 (101)
T cd03003 83 MNPEKYYGDRSK--ESLVKF 100 (101)
T ss_pred CCcccCCCCCCH--HHHHhh
Confidence 988899998877 777665
No 12
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.90 E-value=2.2e-23 Score=140.14 Aligned_cols=94 Identities=31% Similarity=0.568 Sum_probs=85.7
Q ss_pred HHHHHHHhC-CCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeEEE
Q psy17832 66 EFEAKVKQA-STPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDR 144 (189)
Q Consensus 66 ~~~~~~~~~-~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~~~ 144 (189)
+|.+.+... ++++||+||++||++|+.+.|.|+++++.+.+.+.|+.||++...+++++|+|.++|++++|++|+.+.+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 81 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDG 81 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeee
Confidence 466666544 8899999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EecCCcCcHHHHHHHHH
Q psy17832 145 FVGFQKSNLEELEAFVT 161 (189)
Q Consensus 145 ~~G~~~~~~~~l~~~l~ 161 (189)
+.|..+. +.|..+|+
T Consensus 82 ~~g~~~~--~~l~~~l~ 96 (96)
T cd02956 82 FQGAQPE--EQLRQMLD 96 (96)
T ss_pred ecCCCCH--HHHHHHhC
Confidence 9998888 88888763
No 13
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.90 E-value=2.4e-23 Score=148.14 Aligned_cols=111 Identities=15% Similarity=0.281 Sum_probs=97.8
Q ss_pred EecCHHHHHHHHHh-CCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEE-EEe
Q psy17832 60 QITDQKEFEAKVKQ-ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLI-RMK 137 (189)
Q Consensus 60 ~~~~~~~~~~~~~~-~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~-~~~ 137 (189)
++.+.++|++.+.. .+++|||+|||+||++|+.+.|.|+++++++++.+.|+.||+|+.++++..|+|++.|+++ ||+
T Consensus 7 ~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk 86 (142)
T PLN00410 7 HLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFR 86 (142)
T ss_pred hhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEE
Confidence 45678999998774 6899999999999999999999999999999888999999999999999999999887767 669
Q ss_pred CCe-eEEEEec--------CCcCcHHHHHHHHHHhcCCCCCCCC
Q psy17832 138 DGR-EQDRFVG--------FQKSNLEELEAFVTNAEKPAETSEG 172 (189)
Q Consensus 138 ~G~-~~~~~~G--------~~~~~~~~l~~~l~~~l~~~~~~~~ 172 (189)
+|+ .+.+..| ..+. ++|.+.++.++..+.+..+
T Consensus 87 ~g~~~vd~~tG~~~k~~~~~~~k--~~l~~~i~~~~~~a~~g~~ 128 (142)
T PLN00410 87 NKHIMIDLGTGNNNKINWALKDK--QEFIDIVETVYRGARKGRG 128 (142)
T ss_pred CCeEEEEEecccccccccccCCH--HHHHHHHHHHHHHHhcCCe
Confidence 999 8899999 4455 8999999999887776654
No 14
>KOG0907|consensus
Probab=99.90 E-value=3.7e-23 Score=140.94 Aligned_cols=91 Identities=36% Similarity=0.699 Sum_probs=81.2
Q ss_pred HHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeEEEEec
Q psy17832 68 EAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVG 147 (189)
Q Consensus 68 ~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G 147 (189)
.......++++||+|||+||+||+.+.|.|.+|+.+|++ +.|+.||+|+..++++.|+|..+||++||++|+.+.++.|
T Consensus 14 ~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vG 92 (106)
T KOG0907|consen 14 LSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVG 92 (106)
T ss_pred HHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEec
Confidence 333334579999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred CCcCcHHHHHHHHHH
Q psy17832 148 FQKSNLEELEAFVTN 162 (189)
Q Consensus 148 ~~~~~~~~l~~~l~~ 162 (189)
.... .+++.|.+
T Consensus 93 a~~~---~l~~~i~~ 104 (106)
T KOG0907|consen 93 ANKA---ELEKKIAK 104 (106)
T ss_pred CCHH---HHHHHHHh
Confidence 8765 66666654
No 15
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.90 E-value=9.3e-23 Score=138.85 Aligned_cols=98 Identities=22% Similarity=0.454 Sum_probs=86.9
Q ss_pred ecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCccHhHHHhCCCccccEEEEEeCC
Q psy17832 61 ITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDG 139 (189)
Q Consensus 61 ~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G 139 (189)
+.+.++|...+ ..++++||+|||+||++|+.+.|.|+++++.+++ .+.|+.+|+| ..+++++|+|+++||+++|++|
T Consensus 4 i~~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g 81 (102)
T cd02948 4 INNQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNG 81 (102)
T ss_pred ccCHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECC
Confidence 45788998874 5788999999999999999999999999999985 4889999999 7789999999999999999999
Q ss_pred eeEEEEecCCcCcHHHHHHHHHHh
Q psy17832 140 REQDRFVGFQKSNLEELEAFVTNA 163 (189)
Q Consensus 140 ~~~~~~~G~~~~~~~~l~~~l~~~ 163 (189)
+++.+..|. .. +.+.++|+++
T Consensus 82 ~~~~~~~G~-~~--~~~~~~i~~~ 102 (102)
T cd02948 82 ELVAVIRGA-NA--PLLNKTITEL 102 (102)
T ss_pred EEEEEEecC-Ch--HHHHHHHhhC
Confidence 999999996 44 6888888753
No 16
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.90 E-value=3.5e-23 Score=143.02 Aligned_cols=99 Identities=17% Similarity=0.364 Sum_probs=89.7
Q ss_pred CHHHHHHHHHh--CCCcEEEEEecCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCccHhHHHhCCCccccEEEEEeCC
Q psy17832 63 DQKEFEAKVKQ--ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDG 139 (189)
Q Consensus 63 ~~~~~~~~~~~--~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G 139 (189)
+.++|.+.+.. .++++||+||++||++|+.+.|.|+++++++++ ++.|+.||++....++.+|+|.++||+++|++|
T Consensus 10 ~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g 89 (111)
T cd02963 10 TFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIING 89 (111)
T ss_pred eHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECC
Confidence 66788765543 689999999999999999999999999999976 599999999999999999999999999999999
Q ss_pred eeEEEEecCCcCcHHHHHHHHHHh
Q psy17832 140 REQDRFVGFQKSNLEELEAFVTNA 163 (189)
Q Consensus 140 ~~~~~~~G~~~~~~~~l~~~l~~~ 163 (189)
+.+.++.|..+. +.|.++|+++
T Consensus 90 ~~~~~~~G~~~~--~~l~~~i~~~ 111 (111)
T cd02963 90 QVTFYHDSSFTK--QHVVDFVRKL 111 (111)
T ss_pred EEEEEecCCCCH--HHHHHHHhcC
Confidence 999999998888 8999998864
No 17
>PRK10996 thioredoxin 2; Provisional
Probab=99.89 E-value=3.1e-22 Score=143.54 Aligned_cols=104 Identities=25% Similarity=0.597 Sum_probs=94.6
Q ss_pred CeEEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEE
Q psy17832 57 TSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRM 136 (189)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 136 (189)
.+++ .+.++|+.. ..++++++|+||++||++|+.+.|.|.++++++.+++.|+.||++..++++++|+|+++|++++|
T Consensus 36 ~~i~-~~~~~~~~~-i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~ 113 (139)
T PRK10996 36 EVIN-ATGETLDKL-LQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIF 113 (139)
T ss_pred CCEE-cCHHHHHHH-HhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEE
Confidence 3444 477889876 45689999999999999999999999999999988999999999999999999999999999999
Q ss_pred eCCeeEEEEecCCcCcHHHHHHHHHHhc
Q psy17832 137 KDGREQDRFVGFQKSNLEELEAFVTNAE 164 (189)
Q Consensus 137 ~~G~~~~~~~G~~~~~~~~l~~~l~~~l 164 (189)
++|+++.++.|..+. +.|.++|++++
T Consensus 114 ~~G~~v~~~~G~~~~--e~l~~~l~~~~ 139 (139)
T PRK10996 114 KNGQVVDMLNGAVPK--APFDSWLNEAL 139 (139)
T ss_pred ECCEEEEEEcCCCCH--HHHHHHHHHhC
Confidence 999999999999888 99999999864
No 18
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.89 E-value=5.2e-22 Score=142.84 Aligned_cols=100 Identities=22% Similarity=0.466 Sum_probs=88.3
Q ss_pred HHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCcc--HhHHHhCCCccccEEEEE-eCCee
Q psy17832 65 KEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM--TDLAMDYQVSSVPVLIRM-KDGRE 141 (189)
Q Consensus 65 ~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~--~~~~~~~~v~~~Pt~~~~-~~G~~ 141 (189)
.+|+.. ...++++||+||++||++|+.+.|.|.+++++|.+++.|+.||+|.. ..++.+|+|.++||++|| ++|++
T Consensus 11 ~~~~~a-~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~ 89 (142)
T cd02950 11 TPPEVA-LSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE 89 (142)
T ss_pred CCHHHH-HhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence 344444 46789999999999999999999999999999988888888888765 578999999999999999 69999
Q ss_pred EEEEecCCcCcHHHHHHHHHHhcCCC
Q psy17832 142 QDRFVGFQKSNLEELEAFVTNAEKPA 167 (189)
Q Consensus 142 ~~~~~G~~~~~~~~l~~~l~~~l~~~ 167 (189)
+.++.|.... +.|..+|++++...
T Consensus 90 v~~~~G~~~~--~~l~~~l~~l~~~~ 113 (142)
T cd02950 90 EGQSIGLQPK--QVLAQNLDALVAGE 113 (142)
T ss_pred EEEEeCCCCH--HHHHHHHHHHHcCC
Confidence 9999999988 89999999998755
No 19
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.89 E-value=1.9e-22 Score=136.84 Aligned_cols=84 Identities=19% Similarity=0.399 Sum_probs=77.2
Q ss_pred hCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcC-ccHhHHHhCCCccccEEEEEeCCeeEEEEecCCcC
Q psy17832 73 QASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVD-LMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKS 151 (189)
Q Consensus 73 ~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~ 151 (189)
.+|+++||+|||+||++|+.++|.|++++++++ ++.|+.||.+ ..++++++|+|.++||+++|++| .+.++.|..+.
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~ 93 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFP-QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTL 93 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCH
Confidence 479999999999999999999999999999997 5889999998 78999999999999999999888 77899999888
Q ss_pred cHHHHHHHH
Q psy17832 152 NLEELEAFV 160 (189)
Q Consensus 152 ~~~~l~~~l 160 (189)
+.|.+||
T Consensus 94 --~~l~~f~ 100 (100)
T cd02999 94 --DSLAAFY 100 (100)
T ss_pred --HHHHhhC
Confidence 8888774
No 20
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.88 E-value=6.3e-22 Score=136.01 Aligned_cols=98 Identities=28% Similarity=0.548 Sum_probs=84.9
Q ss_pred EecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHcc------CceEEEEEEcCccHhHHHhCCCccccEE
Q psy17832 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMN------GKVQLAKVDVDLMTDLAMDYQVSSVPVL 133 (189)
Q Consensus 60 ~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~------~~v~~~~vd~d~~~~~~~~~~v~~~Pt~ 133 (189)
..++.++|++.+ ..++++||+||++||++|+.+.|.|+++++.+. +++.|+.||++.+.+++++|+|+++||+
T Consensus 4 ~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl 82 (108)
T cd02996 4 VSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTL 82 (108)
T ss_pred EEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEE
Confidence 455788999874 678899999999999999999999999988753 2589999999999999999999999999
Q ss_pred EEEeCCee-EEEEecCCcCcHHHHHHHH
Q psy17832 134 IRMKDGRE-QDRFVGFQKSNLEELEAFV 160 (189)
Q Consensus 134 ~~~~~G~~-~~~~~G~~~~~~~~l~~~l 160 (189)
++|++|++ ..++.|..+. +.|..||
T Consensus 83 ~~~~~g~~~~~~~~g~~~~--~~l~~fi 108 (108)
T cd02996 83 KLFRNGMMMKREYRGQRSV--EALAEFV 108 (108)
T ss_pred EEEeCCcCcceecCCCCCH--HHHHhhC
Confidence 99999984 4777887777 8887764
No 21
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.88 E-value=5.6e-22 Score=136.21 Aligned_cols=98 Identities=27% Similarity=0.515 Sum_probs=87.7
Q ss_pred ecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCc--cHhHHHhCCCccccEEEEEeC
Q psy17832 61 ITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDL--MTDLAMDYQVSSVPVLIRMKD 138 (189)
Q Consensus 61 ~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~--~~~~~~~~~v~~~Pt~~~~~~ 138 (189)
.++.++|...+...++++||+||++||++|+.+.|.|+++++.+.+.+.|+.||++. ..+++.+|+|+++||+++|++
T Consensus 4 ~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~ 83 (109)
T cd03002 4 ELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRP 83 (109)
T ss_pred EcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeC
Confidence 457889999888889999999999999999999999999999998889999999998 889999999999999999976
Q ss_pred Ce-----eEEEEecCCcCcHHHHHHHH
Q psy17832 139 GR-----EQDRFVGFQKSNLEELEAFV 160 (189)
Q Consensus 139 G~-----~~~~~~G~~~~~~~~l~~~l 160 (189)
|+ ....+.|.... +.|..||
T Consensus 84 ~~~~~~~~~~~~~G~~~~--~~l~~fi 108 (109)
T cd03002 84 PKKASKHAVEDYNGERSA--KAIVDFV 108 (109)
T ss_pred CCcccccccccccCccCH--HHHHHHh
Confidence 65 45677888777 8888887
No 22
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.88 E-value=6.5e-22 Score=135.04 Aligned_cols=94 Identities=18% Similarity=0.219 Sum_probs=85.7
Q ss_pred ecCHHHHHHHHHhCCCcEEEEEecCC--ChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeC
Q psy17832 61 ITDQKEFEAKVKQASTPVIVDFFAKW--CDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKD 138 (189)
Q Consensus 61 ~~~~~~~~~~~~~~~k~vvv~f~a~w--C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~ 138 (189)
.+|..+|++.+ ..+.++||+||++| |++|+.+.|.|++++++|++.+.|+.||++++++++.+|+|+++||+++|++
T Consensus 14 ~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkd 92 (111)
T cd02965 14 RVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRD 92 (111)
T ss_pred ccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEEC
Confidence 45677888664 67788999999997 9999999999999999999899999999999999999999999999999999
Q ss_pred CeeEEEEecCCcCcHHHHH
Q psy17832 139 GREQDRFVGFQKSNLEELE 157 (189)
Q Consensus 139 G~~~~~~~G~~~~~~~~l~ 157 (189)
|+++.++.|..+. +++.
T Consensus 93 Gk~v~~~~G~~~~--~e~~ 109 (111)
T cd02965 93 GRYVGVLAGIRDW--DEYV 109 (111)
T ss_pred CEEEEEEeCccCH--HHHh
Confidence 9999999998887 6664
No 23
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.88 E-value=1.8e-21 Score=131.38 Aligned_cols=100 Identities=36% Similarity=0.761 Sum_probs=92.0
Q ss_pred CHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeE
Q psy17832 63 DQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQ 142 (189)
Q Consensus 63 ~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~ 142 (189)
+.++|...+...+++++|+||++||++|+.+.+.|+++.+.+++++.|+.+|++.+..++++|+|.++|++++|++|+++
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~ 81 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEV 81 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEe
Confidence 56788888766678999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEEecCCcCcHHHHHHHHHHhc
Q psy17832 143 DRFVGFQKSNLEELEAFVTNAE 164 (189)
Q Consensus 143 ~~~~G~~~~~~~~l~~~l~~~l 164 (189)
.++.|..+. +.+..+|++.+
T Consensus 82 ~~~~g~~~~--~~l~~~l~~~~ 101 (101)
T TIGR01068 82 DRSVGALPK--AALKQLINKNL 101 (101)
T ss_pred eeecCCCCH--HHHHHHHHhhC
Confidence 999999887 89999998764
No 24
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.87 E-value=1.5e-21 Score=149.57 Aligned_cols=108 Identities=28% Similarity=0.531 Sum_probs=97.0
Q ss_pred EEecCHHHHHHHHHhC----CCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEE
Q psy17832 59 FQITDQKEFEAKVKQA----STPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLI 134 (189)
Q Consensus 59 ~~~~~~~~~~~~~~~~----~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~ 134 (189)
+..++.++|++.+... +++++|+||++||++|+.+.|.++++++++++.+.|+.+|++++.+++++|+|+++||++
T Consensus 32 Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~ 111 (224)
T PTZ00443 32 LVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTLL 111 (224)
T ss_pred cEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEEE
Confidence 4455789999876542 589999999999999999999999999999988999999999999999999999999999
Q ss_pred EEeCCeeEEEEecCCcCcHHHHHHHHHHhcCCCC
Q psy17832 135 RMKDGREQDRFVGFQKSNLEELEAFVTNAEKPAE 168 (189)
Q Consensus 135 ~~~~G~~~~~~~G~~~~~~~~l~~~l~~~l~~~~ 168 (189)
+|++|+++....|..+. +.|.+|+.+.++...
T Consensus 112 ~f~~G~~v~~~~G~~s~--e~L~~fi~~~~~~~~ 143 (224)
T PTZ00443 112 LFDKGKMYQYEGGDRST--EKLAAFALGDFKKAL 143 (224)
T ss_pred EEECCEEEEeeCCCCCH--HHHHHHHHHHHHhhc
Confidence 99999998888887787 999999999986554
No 25
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.87 E-value=3.2e-21 Score=131.58 Aligned_cols=102 Identities=16% Similarity=0.211 Sum_probs=84.7
Q ss_pred HHHHHHHHHh-CCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeE
Q psy17832 64 QKEFEAKVKQ-ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQ 142 (189)
Q Consensus 64 ~~~~~~~~~~-~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~ 142 (189)
.+++++.+.. ++++|||+||++||++|+.+.|.|++++++|++.+.|+.||+|+.+++++.|+|.+.||++||++|+-+
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence 4667777665 499999999999999999999999999999985699999999999999999999999999999999876
Q ss_pred EEEecCCcC--------cHHHHHHHHHHhcC
Q psy17832 143 DRFVGFQKS--------NLEELEAFVTNAEK 165 (189)
Q Consensus 143 ~~~~G~~~~--------~~~~l~~~l~~~l~ 165 (189)
.--.|.... +.+++.+.|+-+..
T Consensus 82 ~~d~gt~~~~k~~~~~~~k~~~idi~e~~yr 112 (114)
T cd02986 82 KVDYGSPDHTKFVGSFKTKQDFIDLIEVIYR 112 (114)
T ss_pred EEecCCCCCcEEEEEcCchhHHHHHHHHHHc
Confidence 533333221 33777777776653
No 26
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.87 E-value=1.4e-21 Score=132.49 Aligned_cols=96 Identities=32% Similarity=0.678 Sum_probs=85.8
Q ss_pred ecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccC---ceEEEEEEcCccHhHHHhCCCccccEEEEEe
Q psy17832 61 ITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG---KVQLAKVDVDLMTDLAMDYQVSSVPVLIRMK 137 (189)
Q Consensus 61 ~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~ 137 (189)
.++.++|...+.. + +++|+||++||++|+.+.|.|+++++++++ ++.|+.||++....++++|+|.++||+++|+
T Consensus 4 ~l~~~~f~~~~~~-~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 81 (102)
T cd03005 4 ELTEDNFDHHIAE-G-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFK 81 (102)
T ss_pred ECCHHHHHHHhhc-C-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEe
Confidence 4577889988643 3 599999999999999999999999999976 6999999999999999999999999999999
Q ss_pred CCeeEEEEecCCcCcHHHHHHHH
Q psy17832 138 DGREQDRFVGFQKSNLEELEAFV 160 (189)
Q Consensus 138 ~G~~~~~~~G~~~~~~~~l~~~l 160 (189)
+|+.+.++.|..+. +.|.+||
T Consensus 82 ~g~~~~~~~G~~~~--~~l~~~i 102 (102)
T cd03005 82 DGEKVDKYKGTRDL--DSLKEFV 102 (102)
T ss_pred CCCeeeEeeCCCCH--HHHHhhC
Confidence 99998999999888 7777764
No 27
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.87 E-value=1.5e-21 Score=132.37 Aligned_cols=97 Identities=24% Similarity=0.513 Sum_probs=84.8
Q ss_pred EecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCccHhHHHhCCCccccEEEEEeC
Q psy17832 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKD 138 (189)
Q Consensus 60 ~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~ 138 (189)
..++.++|++.+ +++ +||+||++||++|+.+.|.|+++++.+++ ++.|+.||+++++.++++|+|+++||+++|++
T Consensus 4 ~~l~~~~f~~~~--~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02994 4 VELTDSNWTLVL--EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAKD 80 (101)
T ss_pred EEcChhhHHHHh--CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeCC
Confidence 345788998764 344 78999999999999999999999998765 69999999999999999999999999999999
Q ss_pred CeeEEEEecCCcCcHHHHHHHHHH
Q psy17832 139 GREQDRFVGFQKSNLEELEAFVTN 162 (189)
Q Consensus 139 G~~~~~~~G~~~~~~~~l~~~l~~ 162 (189)
|++ .++.|..+. ++|..+|++
T Consensus 81 g~~-~~~~G~~~~--~~l~~~i~~ 101 (101)
T cd02994 81 GVF-RRYQGPRDK--EDLISFIEE 101 (101)
T ss_pred CCE-EEecCCCCH--HHHHHHHhC
Confidence 985 788998888 899988864
No 28
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.87 E-value=7.9e-21 Score=131.58 Aligned_cols=102 Identities=27% Similarity=0.450 Sum_probs=86.9
Q ss_pred CeEEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEE
Q psy17832 57 TSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRM 136 (189)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 136 (189)
.+..+.+.++|.+.+ .++++|||+||++||++|+.+.|.|++++++|+ ++.|+.||+++..+++++|+|.++||+++|
T Consensus 5 ~v~~i~~~~~~~~~i-~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~f 82 (113)
T cd02989 5 KYREVSDEKEFFEIV-KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEKAPFLVEKLNIKVLPTVILF 82 (113)
T ss_pred CeEEeCCHHHHHHHH-hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEcccCHHHHHHCCCccCCEEEEE
Confidence 345566678998885 456789999999999999999999999999986 589999999999999999999999999999
Q ss_pred eCCeeEEEEecCCcC------cHHHHHHHH
Q psy17832 137 KDGREQDRFVGFQKS------NLEELEAFV 160 (189)
Q Consensus 137 ~~G~~~~~~~G~~~~------~~~~l~~~l 160 (189)
++|+++.++.|..+. +.+.++.+|
T Consensus 83 k~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 83 KNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred ECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 999999998887543 345555544
No 29
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.87 E-value=3.5e-21 Score=129.54 Aligned_cols=95 Identities=24% Similarity=0.558 Sum_probs=83.9
Q ss_pred CHHHHHHHHHhC-CCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCee
Q psy17832 63 DQKEFEAKVKQA-STPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGRE 141 (189)
Q Consensus 63 ~~~~~~~~~~~~-~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~ 141 (189)
+.++|++.+... +++++|+||++||++|+.+.+.|+++++++..++.|+.+|.++..+++++|+|+++||+++|++|++
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 80 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTI 80 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEE
Confidence 356788776655 7999999999999999999999999999976689999999999999999999999999999999999
Q ss_pred EEEEecCCcCcHHHHHHHH
Q psy17832 142 QDRFVGFQKSNLEELEAFV 160 (189)
Q Consensus 142 ~~~~~G~~~~~~~~l~~~l 160 (189)
+.++.|... +.|.++|
T Consensus 81 ~~~~~g~~~---~~l~~~~ 96 (97)
T cd02984 81 VDRVSGADP---KELAKKV 96 (97)
T ss_pred EEEEeCCCH---HHHHHhh
Confidence 999999754 4666654
No 30
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.86 E-value=4.6e-21 Score=130.21 Aligned_cols=99 Identities=24% Similarity=0.490 Sum_probs=88.4
Q ss_pred EecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCC
Q psy17832 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDG 139 (189)
Q Consensus 60 ~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G 139 (189)
..++.++|...+...+++++|+||++||++|+.+.|.|.++++++.+.+.|+.+|++++.+++++|+|+++|++++|++|
T Consensus 3 ~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 3 VELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred EEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCC
Confidence 45578899988777788899999999999999999999999999988999999999999999999999999999999777
Q ss_pred -eeEEEEecCCcCcHHHHHHHH
Q psy17832 140 -REQDRFVGFQKSNLEELEAFV 160 (189)
Q Consensus 140 -~~~~~~~G~~~~~~~~l~~~l 160 (189)
+....+.|..+. +.|..|+
T Consensus 83 ~~~~~~~~g~~~~--~~l~~~~ 102 (103)
T cd03001 83 KNSPQDYQGGRTA--KAIVSAA 102 (103)
T ss_pred CcceeecCCCCCH--HHHHHHh
Confidence 555678888777 8888775
No 31
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.86 E-value=4.9e-21 Score=129.15 Aligned_cols=93 Identities=18% Similarity=0.443 Sum_probs=85.4
Q ss_pred HHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeEEEEe
Q psy17832 67 FEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFV 146 (189)
Q Consensus 67 ~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~ 146 (189)
++..+...+++++|+||++||++|+.+.|.++++.+++.+++.++.+|+++.+++..+|+|.++|++++|++|+++.++.
T Consensus 5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~ 84 (97)
T cd02949 5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEIS 84 (97)
T ss_pred HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEe
Confidence 44555678999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCcCcHHHHHHHHH
Q psy17832 147 GFQKSNLEELEAFVT 161 (189)
Q Consensus 147 G~~~~~~~~l~~~l~ 161 (189)
|..+. ++|.++|+
T Consensus 85 g~~~~--~~~~~~l~ 97 (97)
T cd02949 85 GVKMK--SEYREFIE 97 (97)
T ss_pred CCccH--HHHHHhhC
Confidence 99988 88887763
No 32
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.86 E-value=5.7e-21 Score=132.38 Aligned_cols=86 Identities=27% Similarity=0.488 Sum_probs=78.5
Q ss_pred cCHHHHHHHHHhC--CCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCC
Q psy17832 62 TDQKEFEAKVKQA--STPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDG 139 (189)
Q Consensus 62 ~~~~~~~~~~~~~--~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G 139 (189)
++.++|.+.+... ++++||+||++||++|+.+.|.|++++++|+ ++.|+.||+++. +++.+|+|.++||+++|++|
T Consensus 9 i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~f~~G 86 (113)
T cd02957 9 ISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKA-FLVNYLDIKVLPTLLVYKNG 86 (113)
T ss_pred EcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhh-HHHHhcCCCcCCEEEEEECC
Confidence 4558998887665 4899999999999999999999999999996 689999999998 99999999999999999999
Q ss_pred eeEEEEecCC
Q psy17832 140 REQDRFVGFQ 149 (189)
Q Consensus 140 ~~~~~~~G~~ 149 (189)
+++.++.|..
T Consensus 87 ~~v~~~~G~~ 96 (113)
T cd02957 87 ELIDNIVGFE 96 (113)
T ss_pred EEEEEEecHH
Confidence 9999998865
No 33
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.86 E-value=6.7e-21 Score=129.55 Aligned_cols=98 Identities=26% Similarity=0.519 Sum_probs=85.9
Q ss_pred EecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHcc--CceEEEEEEcCc--cHhHHHhCCCccccEEEE
Q psy17832 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMN--GKVQLAKVDVDL--MTDLAMDYQVSSVPVLIR 135 (189)
Q Consensus 60 ~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~--~~~~~~~~~v~~~Pt~~~ 135 (189)
..++...|...+ ..+++++|+||++||++|+.+.|.++++++.+. +.+.|+.+|++. ...++++|+|+++||+++
T Consensus 3 ~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~ 81 (104)
T cd02997 3 VHLTDEDFRKFL-KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKY 81 (104)
T ss_pred EEechHhHHHHH-hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEE
Confidence 344677888774 456699999999999999999999999999887 568999999998 899999999999999999
Q ss_pred EeCCeeEEEEecCCcCcHHHHHHHH
Q psy17832 136 MKDGREQDRFVGFQKSNLEELEAFV 160 (189)
Q Consensus 136 ~~~G~~~~~~~G~~~~~~~~l~~~l 160 (189)
|++|+++.++.|.... +.+.+||
T Consensus 82 ~~~g~~~~~~~g~~~~--~~l~~~l 104 (104)
T cd02997 82 FENGKFVEKYEGERTA--EDIIEFM 104 (104)
T ss_pred EeCCCeeEEeCCCCCH--HHHHhhC
Confidence 9999999999998888 8887764
No 34
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.86 E-value=5.9e-21 Score=129.20 Aligned_cols=99 Identities=30% Similarity=0.579 Sum_probs=88.6
Q ss_pred CHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccC--ceEEEEEEcCccHhHHHhCCCccccEEEEEeCCe
Q psy17832 63 DQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG--KVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGR 140 (189)
Q Consensus 63 ~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~ 140 (189)
+.++|...+. ++++++|+||++||++|+.+.+.|+++++.+++ ++.|+.+|++....++++|+|+++|++++|++|+
T Consensus 2 ~~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 2 TASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred chhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence 5678888754 789999999999999999999999999999987 6999999999999999999999999999997776
Q ss_pred eEEEEecCCcCcHHHHHHHHHHhc
Q psy17832 141 EQDRFVGFQKSNLEELEAFVTNAE 164 (189)
Q Consensus 141 ~~~~~~G~~~~~~~~l~~~l~~~l 164 (189)
.+.++.|.... +.|..+|++.+
T Consensus 81 ~~~~~~g~~~~--~~l~~~i~~~~ 102 (102)
T TIGR01126 81 KPVDYEGGRDL--EAIVEFVNEKS 102 (102)
T ss_pred cceeecCCCCH--HHHHHHHHhcC
Confidence 57788998887 89999998753
No 35
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.86 E-value=1.4e-20 Score=136.23 Aligned_cols=92 Identities=22% Similarity=0.515 Sum_probs=82.3
Q ss_pred eEEecCHHHHHHHHHh-CCCcEEEEEecCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCccHhHHHhCCCcc------
Q psy17832 58 SFQITDQKEFEAKVKQ-ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDLMTDLAMDYQVSS------ 129 (189)
Q Consensus 58 ~~~~~~~~~~~~~~~~-~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~v~~------ 129 (189)
.+...+.++|+..+.. .++++||+||++||++|+.+.|.|+++++++.+ ++.|+.||+++.++++++|+|.+
T Consensus 29 ~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~ 108 (152)
T cd02962 29 HIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQ 108 (152)
T ss_pred ccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCC
Confidence 3455678899987654 467999999999999999999999999999975 59999999999999999999988
Q ss_pred ccEEEEEeCCeeEEEEecCC
Q psy17832 130 VPVLIRMKDGREQDRFVGFQ 149 (189)
Q Consensus 130 ~Pt~~~~~~G~~~~~~~G~~ 149 (189)
+||+++|++|+.+.++.|+.
T Consensus 109 ~PT~ilf~~Gk~v~r~~G~~ 128 (152)
T cd02962 109 LPTIILFQGGKEVARRPYYN 128 (152)
T ss_pred CCEEEEEECCEEEEEEeccc
Confidence 99999999999999999854
No 36
>KOG0908|consensus
Probab=99.84 E-value=1.4e-20 Score=142.38 Aligned_cols=111 Identities=28% Similarity=0.517 Sum_probs=99.6
Q ss_pred eEEecCHHHHHHHHHh-CCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEE
Q psy17832 58 SFQITDQKEFEAKVKQ-ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRM 136 (189)
Q Consensus 58 ~~~~~~~~~~~~~~~~-~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 136 (189)
++.+.+..+|+..+.. .+|.|+|+|+|+||+||+.+.|.|..|+.+|+ +.+|++||+|+....+..+||.+.|||++|
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp-~aVFlkVdVd~c~~taa~~gV~amPTFiff 81 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP-GAVFLKVDVDECRGTAATNGVNAMPTFIFF 81 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc-ccEEEEEeHHHhhchhhhcCcccCceEEEE
Confidence 4567778889887665 47999999999999999999999999999996 899999999999999999999999999999
Q ss_pred eCCeeEEEEecCCcCcHHHHHHHHHHhcCCCCCCCC
Q psy17832 137 KDGREQDRFVGFQKSNLEELEAFVTNAEKPAETSEG 172 (189)
Q Consensus 137 ~~G~~~~~~~G~~~~~~~~l~~~l~~~l~~~~~~~~ 172 (189)
++|+.+..+.|.... .|+++|.+++.......+
T Consensus 82 ~ng~kid~~qGAd~~---gLe~kv~~~~stsaa~~~ 114 (288)
T KOG0908|consen 82 RNGVKIDQIQGADAS---GLEEKVAKYASTSAASSG 114 (288)
T ss_pred ecCeEeeeecCCCHH---HHHHHHHHHhccCccccc
Confidence 999999999998765 899999999887766543
No 37
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.84 E-value=9.5e-21 Score=129.23 Aligned_cols=93 Identities=24% Similarity=0.403 Sum_probs=81.6
Q ss_pred HHHHHHHHhCCCcEEEEEecCCChhhhhhhHHH---HHHHHHccCceEEEEEEcCc----cHhHHHhCCCccccEEEEEe
Q psy17832 65 KEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCL---EAIVERMNGKVQLAKVDVDL----MTDLAMDYQVSSVPVLIRMK 137 (189)
Q Consensus 65 ~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~----~~~~~~~~~v~~~Pt~~~~~ 137 (189)
+.|.+. ..+++++||+||++||++|+.+.+.+ .++.+.+++++.++.||+++ ..+++++|+|+++||++||+
T Consensus 2 ~~~~~~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~ 80 (104)
T cd02953 2 AALAQA-LAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYG 80 (104)
T ss_pred HHHHHH-HHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 456665 46789999999999999999999988 67888887789999999987 57899999999999999995
Q ss_pred --CCeeEEEEecCCcCcHHHHHHHH
Q psy17832 138 --DGREQDRFVGFQKSNLEELEAFV 160 (189)
Q Consensus 138 --~G~~~~~~~G~~~~~~~~l~~~l 160 (189)
+|+++.++.|..+. ++|..+|
T Consensus 81 ~~~g~~~~~~~G~~~~--~~l~~~l 103 (104)
T cd02953 81 PGGEPEPLRLPGFLTA--DEFLEAL 103 (104)
T ss_pred CCCCCCCcccccccCH--HHHHHHh
Confidence 89999999999998 8888776
No 38
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.84 E-value=2.7e-20 Score=126.48 Aligned_cols=98 Identities=29% Similarity=0.626 Sum_probs=85.4
Q ss_pred EecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccC--ceEEEEEEcCccHhHHHhCCCccccEEEEEe
Q psy17832 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG--KVQLAKVDVDLMTDLAMDYQVSSVPVLIRMK 137 (189)
Q Consensus 60 ~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~ 137 (189)
..+++++|...+...+++++|+||++||++|+.+.|.|+++++.+++ ++.|+.+|++.+ +++..+++.++|++++|+
T Consensus 3 ~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~ 81 (104)
T cd02995 3 KVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFP 81 (104)
T ss_pred EEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEc
Confidence 45678899988777789999999999999999999999999999876 599999999987 688899999999999998
Q ss_pred CCe--eEEEEecCCcCcHHHHHHHH
Q psy17832 138 DGR--EQDRFVGFQKSNLEELEAFV 160 (189)
Q Consensus 138 ~G~--~~~~~~G~~~~~~~~l~~~l 160 (189)
+|+ ...++.|..+. +.|.+||
T Consensus 82 ~~~~~~~~~~~g~~~~--~~l~~fi 104 (104)
T cd02995 82 AGDKSNPIKYEGDRTL--EDLIKFI 104 (104)
T ss_pred CCCcCCceEccCCcCH--HHHHhhC
Confidence 776 56678888777 8887764
No 39
>PTZ00051 thioredoxin; Provisional
Probab=99.84 E-value=5.6e-20 Score=123.89 Aligned_cols=91 Identities=35% Similarity=0.652 Sum_probs=81.2
Q ss_pred EEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeC
Q psy17832 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKD 138 (189)
Q Consensus 59 ~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~ 138 (189)
.++.+.++|... ...+++++|+||++||++|+.+.+.|+++++++. ++.|+.||++....++++|+|.++||+++|++
T Consensus 3 ~~i~~~~~~~~~-~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 80 (98)
T PTZ00051 3 HIVTSQAEFEST-LSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDELSEVAEKENITSMPTFKVFKN 80 (98)
T ss_pred EEecCHHHHHHH-HhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcchHHHHHHCCCceeeEEEEEeC
Confidence 456677788776 5678899999999999999999999999999875 69999999999999999999999999999999
Q ss_pred CeeEEEEecCCcC
Q psy17832 139 GREQDRFVGFQKS 151 (189)
Q Consensus 139 G~~~~~~~G~~~~ 151 (189)
|+++.++.|....
T Consensus 81 g~~~~~~~G~~~~ 93 (98)
T PTZ00051 81 GSVVDTLLGANDE 93 (98)
T ss_pred CeEEEEEeCCCHH
Confidence 9999999997543
No 40
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.84 E-value=5.1e-20 Score=129.68 Aligned_cols=99 Identities=18% Similarity=0.378 Sum_probs=84.7
Q ss_pred HHHHHHHHhCC-CcEEEEEecCCChhhhhhhHHHH---HHHHHccCceEEEEEEcCcc-------------HhHHHhCCC
Q psy17832 65 KEFEAKVKQAS-TPVIVDFFAKWCDPCKLMAPCLE---AIVERMNGKVQLAKVDVDLM-------------TDLAMDYQV 127 (189)
Q Consensus 65 ~~~~~~~~~~~-k~vvv~f~a~wC~~C~~~~p~l~---~l~~~~~~~v~~~~vd~d~~-------------~~~~~~~~v 127 (189)
+++... ...+ +++||+||++||++|+.+.+.+. .+.+.+.+++.++.||++.. .+++.+|+|
T Consensus 4 ~~~~~a-~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v 82 (125)
T cd02951 4 EDLAEA-AADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV 82 (125)
T ss_pred HHHHHH-HHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence 455555 4567 99999999999999999999884 56667766799999999864 689999999
Q ss_pred ccccEEEEE-eC-CeeEEEEecCCcCcHHHHHHHHHHhcCC
Q psy17832 128 SSVPVLIRM-KD-GREQDRFVGFQKSNLEELEAFVTNAEKP 166 (189)
Q Consensus 128 ~~~Pt~~~~-~~-G~~~~~~~G~~~~~~~~l~~~l~~~l~~ 166 (189)
.++||++|| .+ |+++.++.|.... +.+..+|+.++..
T Consensus 83 ~~~Pt~~~~~~~gg~~~~~~~G~~~~--~~~~~~l~~~~~~ 121 (125)
T cd02951 83 RFTPTVIFLDPEGGKEIARLPGYLPP--DEFLAYLEYVQEK 121 (125)
T ss_pred ccccEEEEEcCCCCceeEEecCCCCH--HHHHHHHHHHHhh
Confidence 999999999 56 7999999999988 8999999988764
No 41
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.83 E-value=3.2e-20 Score=126.20 Aligned_cols=99 Identities=34% Similarity=0.561 Sum_probs=85.4
Q ss_pred EecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHcc--CceEEEEEEcCc-cHhHHHhCCCccccEEEEE
Q psy17832 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMN--GKVQLAKVDVDL-MTDLAMDYQVSSVPVLIRM 136 (189)
Q Consensus 60 ~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~-~~~~~~~~~v~~~Pt~~~~ 136 (189)
..++.++|+..+...++++||+||++||++|+.+.|.++++++.++ +++.|+.+|++. ...++++|+|.++|++++|
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~ 82 (105)
T cd02998 3 VELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFF 82 (105)
T ss_pred EEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEE
Confidence 3456788888766677899999999999999999999999999987 469999999999 9999999999999999999
Q ss_pred eCC-eeEEEEecCCcCcHHHHHHHH
Q psy17832 137 KDG-REQDRFVGFQKSNLEELEAFV 160 (189)
Q Consensus 137 ~~G-~~~~~~~G~~~~~~~~l~~~l 160 (189)
.+| +....+.|.... +.|..||
T Consensus 83 ~~~~~~~~~~~g~~~~--~~l~~~i 105 (105)
T cd02998 83 PKGSTEPVKYEGGRDL--EDLVKFV 105 (105)
T ss_pred eCCCCCccccCCccCH--HHHHhhC
Confidence 555 667778887777 8887764
No 42
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.83 E-value=7.1e-20 Score=126.04 Aligned_cols=99 Identities=25% Similarity=0.496 Sum_probs=81.8
Q ss_pred EecCHHHHHHHHH--hCCCcEEEEEecCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCc-cHhHHH-hCCCccccEEE
Q psy17832 60 QITDQKEFEAKVK--QASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDL-MTDLAM-DYQVSSVPVLI 134 (189)
Q Consensus 60 ~~~~~~~~~~~~~--~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~-~~~~~~-~~~v~~~Pt~~ 134 (189)
..++.++|+..+. .++++++|+||++||++|+.+.|.|.++++.+++ ++.|+.||++. ...++. .|+|+++||++
T Consensus 4 ~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 4 VTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTIL 83 (109)
T ss_pred eeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEE
Confidence 3457788988764 3589999999999999999999999999999987 49999999998 577776 59999999999
Q ss_pred EEe-CCeeEEEEecC-CcCcHHHHHHHH
Q psy17832 135 RMK-DGREQDRFVGF-QKSNLEELEAFV 160 (189)
Q Consensus 135 ~~~-~G~~~~~~~G~-~~~~~~~l~~~l 160 (189)
+|. +++....+.|. .+. +.|..||
T Consensus 84 ~f~~~~~~~~~y~g~~~~~--~~l~~f~ 109 (109)
T cd02993 84 FFPKNSRQPIKYPSEQRDV--DSLLMFV 109 (109)
T ss_pred EEcCCCCCceeccCCCCCH--HHHHhhC
Confidence 994 45566678884 555 7777664
No 43
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.83 E-value=1.3e-19 Score=134.50 Aligned_cols=106 Identities=17% Similarity=0.380 Sum_probs=88.4
Q ss_pred CCCeEEecCHHHHHHHHHhCC--CcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccE
Q psy17832 55 PSTSFQITDQKEFEAKVKQAS--TPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPV 132 (189)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~--k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt 132 (189)
...+.++.+.++|...+...+ .+|||+||++||++|+.+.|.|.+|+++|+ .+.|+.||++.. .++.+|+|.++||
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l~~~f~v~~vPT 138 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GASDEFDTDALPA 138 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-hhHHhCCCCCCCE
Confidence 344555655589988876543 599999999999999999999999999996 799999999987 8999999999999
Q ss_pred EEEEeCCeeEEEEecCCcC-----cHHHHHHHHHH
Q psy17832 133 LIRMKDGREQDRFVGFQKS-----NLEELEAFVTN 162 (189)
Q Consensus 133 ~~~~~~G~~~~~~~G~~~~-----~~~~l~~~l~~ 162 (189)
+++|++|+++.++.|.... ..+.|+.+|.+
T Consensus 139 lllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 139 LLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred EEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 9999999999999887642 34566665544
No 44
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.83 E-value=1e-19 Score=124.15 Aligned_cols=94 Identities=20% Similarity=0.495 Sum_probs=80.8
Q ss_pred HHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccC---ceEEEEEEcCccHhHHHhCCCccccEEEEEeCCee
Q psy17832 65 KEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG---KVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGRE 141 (189)
Q Consensus 65 ~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~ 141 (189)
+.|++. .++++++|+||++||++|+.+.|.|+++++.+++ .+.++.+|++..+.++++|+|.++||+++|++|.
T Consensus 7 ~~~~~~--~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~- 83 (104)
T cd03000 7 DSFKDV--RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL- 83 (104)
T ss_pred hhhhhh--ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC-
Confidence 556653 3467899999999999999999999999998853 4999999999999999999999999999997764
Q ss_pred EEEEecCCcCcHHHHHHHHHHh
Q psy17832 142 QDRFVGFQKSNLEELEAFVTNA 163 (189)
Q Consensus 142 ~~~~~G~~~~~~~~l~~~l~~~ 163 (189)
..++.|..+. +.|..++++.
T Consensus 84 ~~~~~G~~~~--~~l~~~~~~~ 103 (104)
T cd03000 84 AYNYRGPRTK--DDIVEFANRV 103 (104)
T ss_pred ceeecCCCCH--HHHHHHHHhh
Confidence 4568887777 8999998874
No 45
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.81 E-value=3.3e-19 Score=123.48 Aligned_cols=90 Identities=23% Similarity=0.390 Sum_probs=80.0
Q ss_pred hCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeEE--EEecCCc
Q psy17832 73 QASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQD--RFVGFQK 150 (189)
Q Consensus 73 ~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~~--~~~G~~~ 150 (189)
..++.++|+||++||++|+.+.|.|+++++.+ +.+.|..||.++.++++.+|+|.++||+++|++|.... ++.|...
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~ 98 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPA 98 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCc
Confidence 34666889999999999999999999999887 57999999999999999999999999999998765544 7889888
Q ss_pred CcHHHHHHHHHHhcC
Q psy17832 151 SNLEELEAFVTNAEK 165 (189)
Q Consensus 151 ~~~~~l~~~l~~~l~ 165 (189)
. ++|..+|..++.
T Consensus 99 ~--~el~~~i~~i~~ 111 (113)
T cd02975 99 G--YEFASLIEDIVR 111 (113)
T ss_pred h--HHHHHHHHHHHh
Confidence 8 899999998864
No 46
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.80 E-value=5.7e-19 Score=118.55 Aligned_cols=96 Identities=34% Similarity=0.667 Sum_probs=83.2
Q ss_pred cCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHc--cCceEEEEEEcCccHhHHHhCCCccccEEEEEeCC
Q psy17832 62 TDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERM--NGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDG 139 (189)
Q Consensus 62 ~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~--~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G 139 (189)
++.++|...+.. +++++|+||++||++|+.+.+.+.++++.+ .+.+.|+.+|++.+..++++|+|+++|++++|++|
T Consensus 3 l~~~~~~~~i~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 3 LTDDNFDELVKD-SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred ccHHHHHHHHhC-CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 466788877444 448999999999999999999999999999 57899999999999999999999999999999655
Q ss_pred -eeEEEEecCCcCcHHHHHHHH
Q psy17832 140 -REQDRFVGFQKSNLEELEAFV 160 (189)
Q Consensus 140 -~~~~~~~G~~~~~~~~l~~~l 160 (189)
+...++.|..+. +.|.+|+
T Consensus 82 ~~~~~~~~g~~~~--~~i~~~~ 101 (101)
T cd02961 82 SKEPVKYEGPRTL--ESLVEFI 101 (101)
T ss_pred CcccccCCCCcCH--HHHHhhC
Confidence 778888888766 7777653
No 47
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.79 E-value=2.2e-18 Score=120.80 Aligned_cols=97 Identities=14% Similarity=0.257 Sum_probs=77.0
Q ss_pred EecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccH-----------hHHHhCC--
Q psy17832 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT-----------DLAMDYQ-- 126 (189)
Q Consensus 60 ~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-----------~~~~~~~-- 126 (189)
..++.++|.+.+ ..++.++|+||++||++|+.+.|.|.++.++. ++.|+.||+|.+. ++.++|+
T Consensus 9 ~~it~~~~~~~i-~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 9 EVTTVVRALEAL-DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred eecCHHHHHHHH-HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 456788898884 45677899999999999999999999999883 4667777776432 5667765
Q ss_pred --CccccEEEEEeCCeeEEEEecCC-cCcHHHHHHHHH
Q psy17832 127 --VSSVPVLIRMKDGREQDRFVGFQ-KSNLEELEAFVT 161 (189)
Q Consensus 127 --v~~~Pt~~~~~~G~~~~~~~G~~-~~~~~~l~~~l~ 161 (189)
|.++||+++|++|+.+.++.|.. +. ++|.+++.
T Consensus 86 ~~i~~~PT~v~~k~Gk~v~~~~G~~~~~--~~l~~~~~ 121 (122)
T TIGR01295 86 TSFMGTPTFVHITDGKQVSVRCGSSTTA--QELQDIAA 121 (122)
T ss_pred ccCCCCCEEEEEeCCeEEEEEeCCCCCH--HHHHHHhh
Confidence 55699999999999999999953 45 78877764
No 48
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.79 E-value=8.8e-19 Score=131.47 Aligned_cols=110 Identities=16% Similarity=0.312 Sum_probs=84.2
Q ss_pred CCCCeEEecCH--HHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccH------------
Q psy17832 54 APSTSFQITDQ--KEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT------------ 119 (189)
Q Consensus 54 ~~~~~~~~~~~--~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~------------ 119 (189)
++.+.+...++ +.+......++++++|+||++||++|+.++|.|+++.++ ++.++.|+.++..
T Consensus 45 ~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~ 121 (185)
T PRK15412 45 VPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGN 121 (185)
T ss_pred CCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCC
Confidence 45555555552 333332233689999999999999999999999998652 5778888865432
Q ss_pred -----------hHHHhCCCccccEEEEE-eCCeeEEEEecCCcCcHHHHHHHHHHhcCCCC
Q psy17832 120 -----------DLAMDYQVSSVPVLIRM-KDGREQDRFVGFQKSNLEELEAFVTNAEKPAE 168 (189)
Q Consensus 120 -----------~~~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~~~l~~~l~~~l~~~~ 168 (189)
.+...|+|.++|+.+++ ++|+++.++.|..+. +.+++.|+.+++...
T Consensus 122 ~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~~G~~~~--~~l~~~i~~~~~~~~ 180 (185)
T PRK15412 122 PYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNP--RVWESEIKPLWEKYS 180 (185)
T ss_pred CCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEEecCCCH--HHHHHHHHHHHHHHH
Confidence 24567899999988888 899999999999988 889998888886544
No 49
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.78 E-value=1.7e-18 Score=120.11 Aligned_cols=82 Identities=23% Similarity=0.482 Sum_probs=71.8
Q ss_pred EecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccC---ceEEEEEEcC--ccHhHHHhCCCccccEEE
Q psy17832 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG---KVQLAKVDVD--LMTDLAMDYQVSSVPVLI 134 (189)
Q Consensus 60 ~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d--~~~~~~~~~~v~~~Pt~~ 134 (189)
..++.++|...+...++++||+||++||++|+.+.|.|+++++++++ .+.|+.+|++ ...+++++|+|+++||++
T Consensus 4 ~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~ 83 (114)
T cd02992 4 IVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLR 83 (114)
T ss_pred EECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEE
Confidence 45578999998887789999999999999999999999999998753 4899999975 467899999999999999
Q ss_pred EEeCCee
Q psy17832 135 RMKDGRE 141 (189)
Q Consensus 135 ~~~~G~~ 141 (189)
+|++|+.
T Consensus 84 lf~~~~~ 90 (114)
T cd02992 84 YFPPFSK 90 (114)
T ss_pred EECCCCc
Confidence 9987763
No 50
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.77 E-value=4.9e-18 Score=111.91 Aligned_cols=91 Identities=49% Similarity=0.896 Sum_probs=80.7
Q ss_pred HHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeEEEE
Q psy17832 66 EFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRF 145 (189)
Q Consensus 66 ~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~ 145 (189)
+|...+. .+++++|.||++||++|+.+.+.++++.+. .+++.|+.+|++...+++.+|++.++|+++++++|+.+..+
T Consensus 2 ~~~~~~~-~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~ 79 (93)
T cd02947 2 EFEELIK-SAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRV 79 (93)
T ss_pred chHHHHh-cCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEE
Confidence 4555533 348899999999999999999999999988 56899999999999999999999999999999999999999
Q ss_pred ecCCcCcHHHHHHHH
Q psy17832 146 VGFQKSNLEELEAFV 160 (189)
Q Consensus 146 ~G~~~~~~~~l~~~l 160 (189)
.|.... +.|..+|
T Consensus 80 ~g~~~~--~~l~~~i 92 (93)
T cd02947 80 VGADPK--EELEEFL 92 (93)
T ss_pred ecCCCH--HHHHHHh
Confidence 998887 7887776
No 51
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.77 E-value=5.5e-18 Score=127.45 Aligned_cols=100 Identities=17% Similarity=0.372 Sum_probs=83.5
Q ss_pred EEecCHHHHHHHHHhC--CCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEE
Q psy17832 59 FQITDQKEFEAKVKQA--STPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRM 136 (189)
Q Consensus 59 ~~~~~~~~~~~~~~~~--~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 136 (189)
+..++.++|...+... +.+|||+||++||++|+.+.|.|++|+++|. .+.|+.||++.. ...|+|.++||+++|
T Consensus 84 v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~~---~~~~~i~~lPTlliy 159 (192)
T cd02988 84 VYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQC---IPNYPDKNLPTILVY 159 (192)
T ss_pred EEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHHh---HhhCCCCCCCEEEEE
Confidence 3344788888776654 4589999999999999999999999999996 799999999864 689999999999999
Q ss_pred eCCeeEEEEecCCcC-----cHHHHHHHHHH
Q psy17832 137 KDGREQDRFVGFQKS-----NLEELEAFVTN 162 (189)
Q Consensus 137 ~~G~~~~~~~G~~~~-----~~~~l~~~l~~ 162 (189)
++|+++.++.|.... +.+.|+.+|.+
T Consensus 160 k~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 160 RNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred ECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 999999999986432 45677766654
No 52
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.77 E-value=5.2e-18 Score=143.58 Aligned_cols=105 Identities=20% Similarity=0.246 Sum_probs=88.2
Q ss_pred CCCCCeEEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccC-ceEEEEEE-----------------
Q psy17832 53 EAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVD----------------- 114 (189)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd----------------- 114 (189)
.+|++.+...++..+. ..++|+|||+|||+||++|+.++|.|++++++++. ++.|+.|.
T Consensus 37 ~lP~f~l~D~dG~~v~---lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~ 113 (521)
T PRK14018 37 TLSTLKTADNRPASVY---LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWY 113 (521)
T ss_pred CCCCeEeecCCCceee---ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHH
Confidence 4677777777777654 34799999999999999999999999999999873 46666553
Q ss_pred -----------cCccHhHHHhCCCccccEEEEE-eCCeeEEEEecCCcCcHHHHHHHHHH
Q psy17832 115 -----------VDLMTDLAMDYQVSSVPVLIRM-KDGREQDRFVGFQKSNLEELEAFVTN 162 (189)
Q Consensus 115 -----------~d~~~~~~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~~~l~~~l~~ 162 (189)
+|....+++.|+|+++|+++++ ++|+++.++.|..+. ++|.++|+.
T Consensus 114 ~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~--eeL~a~Ie~ 171 (521)
T PRK14018 114 AGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISE--AQALALIRN 171 (521)
T ss_pred HhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCH--HHHHHHHHH
Confidence 3455678899999999999888 899999999999998 999999883
No 53
>PTZ00062 glutaredoxin; Provisional
Probab=99.76 E-value=5.8e-18 Score=127.94 Aligned_cols=93 Identities=11% Similarity=0.137 Sum_probs=80.7
Q ss_pred cCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCee
Q psy17832 62 TDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGRE 141 (189)
Q Consensus 62 ~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~ 141 (189)
.+.++|...+....+.+|++|||+||++|+.+.|.+.+|+++|+ .+.|+.||.+ |+|.++||++||++|++
T Consensus 4 ~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d--------~~V~~vPtfv~~~~g~~ 74 (204)
T PTZ00062 4 IKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNLA--------DANNEYGVFEFYQNSQL 74 (204)
T ss_pred CCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEccc--------cCcccceEEEEEECCEE
Confidence 46788888765444778999999999999999999999999996 7999999987 99999999999999999
Q ss_pred EEEEecCCcCcHHHHHHHHHHhcCC
Q psy17832 142 QDRFVGFQKSNLEELEAFVTNAEKP 166 (189)
Q Consensus 142 ~~~~~G~~~~~~~~l~~~l~~~l~~ 166 (189)
+.|+.|.... .|..+|.++...
T Consensus 75 i~r~~G~~~~---~~~~~~~~~~~~ 96 (204)
T PTZ00062 75 INSLEGCNTS---TLVSFIRGWAQK 96 (204)
T ss_pred EeeeeCCCHH---HHHHHHHHHcCC
Confidence 9999998754 777777776653
No 54
>KOG0190|consensus
Probab=99.76 E-value=2.5e-18 Score=143.31 Aligned_cols=112 Identities=27% Similarity=0.547 Sum_probs=99.2
Q ss_pred CCCeEEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccC---ceEEEEEEcCccHhHHHhCCCcccc
Q psy17832 55 PSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG---KVQLAKVDVDLMTDLAMDYQVSSVP 131 (189)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~~~~~~v~~~P 131 (189)
...++.+ +.+.|... ...+..++|.||||||+||+.+.|.+++.++.+.. .+.++.||+.+..+++.+|+|+++|
T Consensus 24 ~~~Vl~L-t~dnf~~~-i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 24 EEDVLVL-TKDNFKET-INGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP 101 (493)
T ss_pred ccceEEE-ecccHHHH-hccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence 4444444 67889988 56677899999999999999999999999998876 5899999999999999999999999
Q ss_pred EEEEEeCCeeEEEEecCCcCcHHHHHHHHHHhcCCCCCC
Q psy17832 132 VLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEKPAETS 170 (189)
Q Consensus 132 t~~~~~~G~~~~~~~G~~~~~~~~l~~~l~~~l~~~~~~ 170 (189)
|+.+|++|+....|.|.+.. +.|..|+.+..+.+...
T Consensus 102 TlkiFrnG~~~~~Y~G~r~a--dgIv~wl~kq~gPa~~~ 138 (493)
T KOG0190|consen 102 TLKIFRNGRSAQDYNGPREA--DGIVKWLKKQSGPASKT 138 (493)
T ss_pred eEEEEecCCcceeccCcccH--HHHHHHHHhccCCCcee
Confidence 99999999987789999999 99999999998777654
No 55
>PTZ00102 disulphide isomerase; Provisional
Probab=99.76 E-value=9.1e-18 Score=142.56 Aligned_cols=108 Identities=19% Similarity=0.413 Sum_probs=95.2
Q ss_pred CeEEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccC--ceEEEEEEcCccHhHHHhCCCccccEEE
Q psy17832 57 TSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG--KVQLAKVDVDLMTDLAMDYQVSSVPVLI 134 (189)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~~~~~~v~~~Pt~~ 134 (189)
..+..+++++|+..+...+++|||+|||+||++|+.+.|.|+++++.+++ .+.|+.+|++.+...+..|+++++||++
T Consensus 357 ~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~ 436 (477)
T PTZ00102 357 GPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTIL 436 (477)
T ss_pred CCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEE
Confidence 34666678999998888899999999999999999999999999998875 5899999999999999999999999999
Q ss_pred EEeCCee-EEEEecCCcCcHHHHHHHHHHhcCC
Q psy17832 135 RMKDGRE-QDRFVGFQKSNLEELEAFVTNAEKP 166 (189)
Q Consensus 135 ~~~~G~~-~~~~~G~~~~~~~~l~~~l~~~l~~ 166 (189)
+|++|+. ..++.|..+. +.|.++|++.+..
T Consensus 437 ~~~~~~~~~~~~~G~~~~--~~l~~~i~~~~~~ 467 (477)
T PTZ00102 437 FVKAGERTPIPYEGERTV--EGFKEFVNKHATN 467 (477)
T ss_pred EEECCCcceeEecCcCCH--HHHHHHHHHcCCC
Confidence 9965554 4578998888 9999999998854
No 56
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.75 E-value=1.5e-17 Score=140.27 Aligned_cols=106 Identities=27% Similarity=0.565 Sum_probs=93.8
Q ss_pred EecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccC---ceEEEEEEcCccHhHHHhCCCccccEEEEE
Q psy17832 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG---KVQLAKVDVDLMTDLAMDYQVSSVPVLIRM 136 (189)
Q Consensus 60 ~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 136 (189)
..++.++|...+ .++++++|+|||+||++|+.+.|.+.++++.+.+ ++.|+.||++...+++++|+|.++||+++|
T Consensus 4 ~~l~~~~~~~~i-~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~ 82 (462)
T TIGR01130 4 LVLTKDNFDDFI-KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIF 82 (462)
T ss_pred eECCHHHHHHHH-hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEE
Confidence 345788898874 5678899999999999999999999999887764 499999999999999999999999999999
Q ss_pred eCCee-EEEEecCCcCcHHHHHHHHHHhcCCCC
Q psy17832 137 KDGRE-QDRFVGFQKSNLEELEAFVTNAEKPAE 168 (189)
Q Consensus 137 ~~G~~-~~~~~G~~~~~~~~l~~~l~~~l~~~~ 168 (189)
++|+. +.++.|..+. +.|..||.+.+....
T Consensus 83 ~~g~~~~~~~~g~~~~--~~l~~~i~~~~~~~~ 113 (462)
T TIGR01130 83 RNGEDSVSDYNGPRDA--DGIVKYMKKQSGPAV 113 (462)
T ss_pred eCCccceeEecCCCCH--HHHHHHHHHhcCCCc
Confidence 99987 7889998888 999999999986444
No 57
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.75 E-value=1.8e-17 Score=123.03 Aligned_cols=107 Identities=20% Similarity=0.362 Sum_probs=81.9
Q ss_pred CCCCeEEecCHH--HHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcC---------------
Q psy17832 54 APSTSFQITDQK--EFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVD--------------- 116 (189)
Q Consensus 54 ~~~~~~~~~~~~--~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d--------------- 116 (189)
++++.+...+++ .+......++++++|+||++||++|+.++|.++++.++ ++.++.|+.+
T Consensus 40 ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~ 116 (173)
T TIGR00385 40 VPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGN 116 (173)
T ss_pred CCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCC
Confidence 455555555543 34322234689999999999999999999999998753 4666666643
Q ss_pred --------ccHhHHHhCCCccccEEEEE-eCCeeEEEEecCCcCcHHHHHHHHHHhcC
Q psy17832 117 --------LMTDLAMDYQVSSVPVLIRM-KDGREQDRFVGFQKSNLEELEAFVTNAEK 165 (189)
Q Consensus 117 --------~~~~~~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~~~l~~~l~~~l~ 165 (189)
....+.+.|++.++|+.+++ ++|+++.++.|..+. +++.++|++++.
T Consensus 117 ~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~--~~l~~~l~~~~~ 172 (173)
T TIGR00385 117 PYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRHAGPLNN--EVWTEGFLPAME 172 (173)
T ss_pred CCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEEeccCCH--HHHHHHHHHHhh
Confidence 33356778999999987777 899999999999888 999999999874
No 58
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.74 E-value=3e-17 Score=106.91 Aligned_cols=81 Identities=23% Similarity=0.393 Sum_probs=72.9
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeEEEEecCCcCcHHHHH
Q psy17832 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELE 157 (189)
Q Consensus 78 vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~l~ 157 (189)
.|..||++||++|+.+.+.|+++++.++.++.++.||+++.++++++|++.++||+++ +|+. ++.|..+. ++|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~--~~~G~~~~--~~l~ 75 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV--EFIGAPTK--EELV 75 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE--EEecCCCH--HHHH
Confidence 5678999999999999999999999998789999999999999999999999999886 7763 67898888 8999
Q ss_pred HHHHHhc
Q psy17832 158 AFVTNAE 164 (189)
Q Consensus 158 ~~l~~~l 164 (189)
++|++.|
T Consensus 76 ~~l~~~~ 82 (82)
T TIGR00411 76 EAIKKRL 82 (82)
T ss_pred HHHHhhC
Confidence 9988764
No 59
>PTZ00102 disulphide isomerase; Provisional
Probab=99.74 E-value=2.9e-17 Score=139.49 Aligned_cols=107 Identities=22% Similarity=0.485 Sum_probs=94.0
Q ss_pred EEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHcc---CceEEEEEEcCccHhHHHhCCCccccEEEE
Q psy17832 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMN---GKVQLAKVDVDLMTDLAMDYQVSSVPVLIR 135 (189)
Q Consensus 59 ~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~ 135 (189)
+..++.++|...+ .+++.+||+||++||++|+.+.|.+.++++.+. .++.|+.||++.+.+++++|+|.++||+++
T Consensus 34 v~~l~~~~f~~~i-~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 112 (477)
T PTZ00102 34 VTVLTDSTFDKFI-TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKF 112 (477)
T ss_pred cEEcchhhHHHHH-hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEE
Confidence 4556788998874 567889999999999999999999999887764 369999999999999999999999999999
Q ss_pred EeCCeeEEEEecCCcCcHHHHHHHHHHhcCCCCC
Q psy17832 136 MKDGREQDRFVGFQKSNLEELEAFVTNAEKPAET 169 (189)
Q Consensus 136 ~~~G~~~~~~~G~~~~~~~~l~~~l~~~l~~~~~ 169 (189)
|++|+.+ ++.|..+. +.|..||++++.....
T Consensus 113 ~~~g~~~-~y~g~~~~--~~l~~~l~~~~~~~~~ 143 (477)
T PTZ00102 113 FNKGNPV-NYSGGRTA--DGIVSWIKKLTGPAVT 143 (477)
T ss_pred EECCceE-EecCCCCH--HHHHHHHHHhhCCCce
Confidence 9888877 88998888 9999999999876543
No 60
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.74 E-value=4.1e-17 Score=136.55 Aligned_cols=104 Identities=20% Similarity=0.372 Sum_probs=84.9
Q ss_pred eEEecCHHHHHHHHH--hCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCc-eEEEEEEcCccH-hHH-HhCCCccccE
Q psy17832 58 SFQITDQKEFEAKVK--QASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGK-VQLAKVDVDLMT-DLA-MDYQVSSVPV 132 (189)
Q Consensus 58 ~~~~~~~~~~~~~~~--~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~d~~~-~~~-~~~~v~~~Pt 132 (189)
.+..++.++|+..+. ..++++||+||++||++|+.+.|.|++++++|.+. +.|+.||+|.+. .++ ++|+|.++||
T Consensus 352 ~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PT 431 (463)
T TIGR00424 352 NVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPT 431 (463)
T ss_pred CeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccce
Confidence 445567889998864 47899999999999999999999999999999864 899999999764 454 6899999999
Q ss_pred EEEEeCCee-EEEEe-cCCcCcHHHHHHHHHHh
Q psy17832 133 LIRMKDGRE-QDRFV-GFQKSNLEELEAFVTNA 163 (189)
Q Consensus 133 ~~~~~~G~~-~~~~~-G~~~~~~~~l~~~l~~~ 163 (189)
++||++|.. ...|. |..+. +.|..||+.+
T Consensus 432 ii~Fk~g~~~~~~Y~~g~R~~--e~L~~Fv~~~ 462 (463)
T TIGR00424 432 ILFFPKHSSRPIKYPSEKRDV--DSLMSFVNLL 462 (463)
T ss_pred EEEEECCCCCceeCCCCCCCH--HHHHHHHHhh
Confidence 999977752 33454 45666 8999998764
No 61
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.73 E-value=2.6e-17 Score=116.02 Aligned_cols=94 Identities=23% Similarity=0.434 Sum_probs=73.3
Q ss_pred CCCeEEecCH--HHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEc-----------------
Q psy17832 55 PSTSFQITDQ--KEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDV----------------- 115 (189)
Q Consensus 55 ~~~~~~~~~~--~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~----------------- 115 (189)
+++.+...++ ..+... ..+++++||+||++||++|+.+.|.|+++.++++ +.|+.|+.
T Consensus 4 p~f~~~~~~g~~~~~~~~-~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~ 80 (127)
T cd03010 4 PAFSLPALPGPDKTLTSA-DLKGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNP 80 (127)
T ss_pred CCcccccccCCCccccHH-HcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCC
Confidence 4444444444 445433 3358999999999999999999999999988763 66666653
Q ss_pred ------CccHhHHHhCCCccccEEEEE-eCCeeEEEEecCCcC
Q psy17832 116 ------DLMTDLAMDYQVSSVPVLIRM-KDGREQDRFVGFQKS 151 (189)
Q Consensus 116 ------d~~~~~~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~ 151 (189)
|....+++.|++.++|+.+++ ++|+++.++.|..+.
T Consensus 81 ~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~ 123 (127)
T cd03010 81 YAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYKHVGPLTP 123 (127)
T ss_pred CceEEECCcchHHHhcCCCCCCeEEEECCCceEEEEEeccCCh
Confidence 445578889999999977777 899999999998877
No 62
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.72 E-value=4.8e-17 Score=112.93 Aligned_cols=82 Identities=21% Similarity=0.441 Sum_probs=71.2
Q ss_pred ecCHHHHHHHHHh-CCCcEEEEEec-------CCChhhhhhhHHHHHHHHHccCceEEEEEEcCc-------cHhHHHhC
Q psy17832 61 ITDQKEFEAKVKQ-ASTPVIVDFFA-------KWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDL-------MTDLAMDY 125 (189)
Q Consensus 61 ~~~~~~~~~~~~~-~~k~vvv~f~a-------~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-------~~~~~~~~ 125 (189)
..+.++|...+.. +++++||+||| +||++|+.+.|.|+++.+++++++.|+.||+++ +.++...|
T Consensus 6 ~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 6 VRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred ccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhcc
Confidence 4567888887665 47899999999 999999999999999999998789999999976 45899999
Q ss_pred CCc-cccEEEEEeCCeeE
Q psy17832 126 QVS-SVPVLIRMKDGREQ 142 (189)
Q Consensus 126 ~v~-~~Pt~~~~~~G~~~ 142 (189)
+|. ++||+++|++|+.+
T Consensus 86 ~I~~~iPT~~~~~~~~~l 103 (119)
T cd02952 86 KLTTGVPTLLRWKTPQRL 103 (119)
T ss_pred CcccCCCEEEEEcCCcee
Confidence 998 99999999766433
No 63
>PLN02309 5'-adenylylsulfate reductase
Probab=99.72 E-value=1.1e-16 Score=133.87 Aligned_cols=105 Identities=22% Similarity=0.435 Sum_probs=87.0
Q ss_pred CeEEecCHHHHHHHHH--hCCCcEEEEEecCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcC-ccHhHHH-hCCCcccc
Q psy17832 57 TSFQITDQKEFEAKVK--QASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVD-LMTDLAM-DYQVSSVP 131 (189)
Q Consensus 57 ~~~~~~~~~~~~~~~~--~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d-~~~~~~~-~~~v~~~P 131 (189)
..+..++.++|+..+. ..++++||+||++||++|+.+.|.|++++++|.+ ++.|+.||++ .+.+++. +|+|.++|
T Consensus 345 ~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~P 424 (457)
T PLN02309 345 QNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 424 (457)
T ss_pred CCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceee
Confidence 3455568899998764 4689999999999999999999999999999976 4999999999 7788886 69999999
Q ss_pred EEEEEeCCe-eEEEEe-cCCcCcHHHHHHHHHHh
Q psy17832 132 VLIRMKDGR-EQDRFV-GFQKSNLEELEAFVTNA 163 (189)
Q Consensus 132 t~~~~~~G~-~~~~~~-G~~~~~~~~l~~~l~~~ 163 (189)
|++||++|. ....|. |..+. +.|..||+.+
T Consensus 425 Til~f~~g~~~~v~Y~~~~R~~--~~L~~fv~~~ 456 (457)
T PLN02309 425 TILLFPKNSSRPIKYPSEKRDV--DSLLSFVNSL 456 (457)
T ss_pred EEEEEeCCCCCeeecCCCCcCH--HHHHHHHHHh
Confidence 999997664 233454 35666 8999999875
No 64
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.72 E-value=7.3e-17 Score=117.13 Aligned_cols=86 Identities=15% Similarity=0.258 Sum_probs=67.7
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCcc------------HhHH-HhC---CCccccEEEEE-e
Q psy17832 75 STPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM------------TDLA-MDY---QVSSVPVLIRM-K 137 (189)
Q Consensus 75 ~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~------------~~~~-~~~---~v~~~Pt~~~~-~ 137 (189)
++..||+||++||++|++++|.|++++++|+ +.++.|++|.. .+.. ..| ++.++||.+++ +
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 4557999999999999999999999999985 55555665532 2333 345 88999999999 6
Q ss_pred CCee-EEEEecCCcCcHHHHHHHHHHhc
Q psy17832 138 DGRE-QDRFVGFQKSNLEELEAFVTNAE 164 (189)
Q Consensus 138 ~G~~-~~~~~G~~~~~~~~l~~~l~~~l 164 (189)
+|++ +.++.|..+. +++.+.|.++|
T Consensus 128 ~G~~i~~~~~G~~s~--~~l~~~I~~ll 153 (153)
T TIGR02738 128 NTRKAYPVLQGAVDE--AELANRMDEIL 153 (153)
T ss_pred CCCEEEEEeecccCH--HHHHHHHHHhC
Confidence 7665 5678999888 89999888765
No 65
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.71 E-value=1.7e-16 Score=117.47 Aligned_cols=110 Identities=25% Similarity=0.495 Sum_probs=91.1
Q ss_pred CCCCCCCeEEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCc-eEEEEEEcCc------------
Q psy17832 51 PAEAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGK-VQLAKVDVDL------------ 117 (189)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~d~------------ 117 (189)
+...+++.+...+++.+... ...+++++|+||++||++|+...+.|.++++++.+. +.++.|++|.
T Consensus 38 g~~~p~~~~~~~~g~~~~l~-~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~ 116 (173)
T PRK03147 38 GKEAPNFVLTDLEGKKIELK-DLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRY 116 (173)
T ss_pred CCCCCCcEeecCCCCEEeHH-HcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHh
Confidence 34466777777777766533 336889999999999999999999999999999864 8888888753
Q ss_pred ----------cHhHHHhCCCccccEEEEE-eCCeeEEEEecCCcCcHHHHHHHHHHh
Q psy17832 118 ----------MTDLAMDYQVSSVPVLIRM-KDGREQDRFVGFQKSNLEELEAFVTNA 163 (189)
Q Consensus 118 ----------~~~~~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~~~l~~~l~~~ 163 (189)
..++.+.|+|..+|+++++ ++|+++..+.|.... +++.++|+++
T Consensus 117 ~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~--~~l~~~l~~~ 171 (173)
T PRK03147 117 GLTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTE--EQLEEYLEKI 171 (173)
T ss_pred CCCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCH--HHHHHHHHHh
Confidence 3467899999999999999 799999999999888 8898888765
No 66
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.71 E-value=2.4e-17 Score=114.75 Aligned_cols=92 Identities=13% Similarity=0.314 Sum_probs=68.5
Q ss_pred HhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccH-hHHHhCCCcc--ccEEEEE-eCCeeEEEEe-
Q psy17832 72 KQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT-DLAMDYQVSS--VPVLIRM-KDGREQDRFV- 146 (189)
Q Consensus 72 ~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-~~~~~~~v~~--~Pt~~~~-~~G~~~~~~~- 146 (189)
..++++|||+||++||++|+.+.|.+.+..+.+.....|+.|+++... .+...|++.+ +||++|| .+|+++.++.
T Consensus 16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~ 95 (117)
T cd02959 16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEIIN 95 (117)
T ss_pred HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhcc
Confidence 567999999999999999999999999876654444456666666554 4567899876 9999999 6999987544
Q ss_pred --cCCcCcHHHHHHHHHHhcC
Q psy17832 147 --GFQKSNLEELEAFVTNAEK 165 (189)
Q Consensus 147 --G~~~~~~~~l~~~l~~~l~ 165 (189)
|.... +.+...|+.+.+
T Consensus 96 ~~~~~~~--~~f~~~~~~~~~ 114 (117)
T cd02959 96 KKGNPNY--KYFYSSAAQVTE 114 (117)
T ss_pred CCCCccc--cccCCCHHHHHh
Confidence 44444 555555555443
No 67
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.70 E-value=8.6e-17 Score=109.17 Aligned_cols=88 Identities=19% Similarity=0.268 Sum_probs=78.4
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCc--cccEEEEEeC--CeeEEEEecCCc
Q psy17832 75 STPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVS--SVPVLIRMKD--GREQDRFVGFQK 150 (189)
Q Consensus 75 ~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~--~~Pt~~~~~~--G~~~~~~~G~~~ 150 (189)
++++++.||++||++|+.+.|.|++++++|++++.|+.||+++.+.++..|||. ++|+++++++ |+......|..+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 789999999999999999999999999999999999999999999999999999 9999999966 766655555545
Q ss_pred CcHHHHHHHHHHhc
Q psy17832 151 SNLEELEAFVTNAE 164 (189)
Q Consensus 151 ~~~~~l~~~l~~~l 164 (189)
. +.|.+||++.+
T Consensus 92 ~--~~l~~fi~~~~ 103 (103)
T cd02982 92 A--ESLEEFVEDFL 103 (103)
T ss_pred H--HHHHHHHHhhC
Confidence 6 89999998764
No 68
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.70 E-value=1.1e-16 Score=114.98 Aligned_cols=71 Identities=23% Similarity=0.411 Sum_probs=60.8
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHccC--------ceEEEEEEcCccH-------------------------h
Q psy17832 74 ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG--------KVQLAKVDVDLMT-------------------------D 120 (189)
Q Consensus 74 ~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~--------~v~~~~vd~d~~~-------------------------~ 120 (189)
++|+++|+|||+||++|+.++|.|.++++++.+ ++.++.|+.|... .
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 689999999999999999999999999886653 4888888876432 4
Q ss_pred HHHhCCCccccEEEEE-eCCeeEEE
Q psy17832 121 LAMDYQVSSVPVLIRM-KDGREQDR 144 (189)
Q Consensus 121 ~~~~~~v~~~Pt~~~~-~~G~~~~~ 144 (189)
+.++|+|.++|+.+++ ++|+++.+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEee
Confidence 7778999999999999 89999864
No 69
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.69 E-value=1.6e-16 Score=109.52 Aligned_cols=96 Identities=18% Similarity=0.266 Sum_probs=76.8
Q ss_pred ecCHHHHHHHHHhCCCcEEEEEec--CCCh---hhhhhhHHHHHHHHHccCceEEEEEEcC-----ccHhHHHhCCCc--
Q psy17832 61 ITDQKEFEAKVKQASTPVIVDFFA--KWCD---PCKLMAPCLEAIVERMNGKVQLAKVDVD-----LMTDLAMDYQVS-- 128 (189)
Q Consensus 61 ~~~~~~~~~~~~~~~k~vvv~f~a--~wC~---~C~~~~p~l~~l~~~~~~~v~~~~vd~d-----~~~~~~~~~~v~-- 128 (189)
.++..+|+.. ..+++.+||.||| +||+ +|+.+.|.+.+.+ ..+.++.||++ ++.+|+++|+|+
T Consensus 5 ~L~~~nF~~~-v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa----~~v~lakVd~~d~~~~~~~~L~~~y~I~~~ 79 (116)
T cd03007 5 DLDTVTFYKV-IPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASAT----DDLLVAEVGIKDYGEKLNMELGERYKLDKE 79 (116)
T ss_pred ECChhhHHHH-HhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhc----CceEEEEEecccccchhhHHHHHHhCCCcC
Confidence 4578899987 4677889999999 8888 7777666665433 25999999994 567899999999
Q ss_pred cccEEEEEeCCe--eEEEEecC-CcCcHHHHHHHHHHh
Q psy17832 129 SVPVLIRMKDGR--EQDRFVGF-QKSNLEELEAFVTNA 163 (189)
Q Consensus 129 ~~Pt~~~~~~G~--~~~~~~G~-~~~~~~~l~~~l~~~ 163 (189)
++||+.+|++|. ....|.|. +.. +.|..||.+.
T Consensus 80 gyPTl~lF~~g~~~~~~~Y~G~~r~~--~~lv~~v~~~ 115 (116)
T cd03007 80 SYPVIYLFHGGDFENPVPYSGADVTV--DALQRFLKGN 115 (116)
T ss_pred CCCEEEEEeCCCcCCCccCCCCcccH--HHHHHHHHhc
Confidence 999999998885 33567886 777 8999999864
No 70
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.68 E-value=5.7e-16 Score=119.67 Aligned_cols=112 Identities=11% Similarity=0.103 Sum_probs=86.1
Q ss_pred CCCCCCCeEEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCc-------c----
Q psy17832 51 PAEAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDL-------M---- 118 (189)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~-------~---- 118 (189)
...++++.+...+++.+... ..+++++||+||++||++|+.++|.|++++++|++ ++.++.|+++. .
T Consensus 76 g~~aPdF~l~d~~G~~vsLs-d~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei 154 (236)
T PLN02399 76 EKSVHDFTVKDIDGKDVALS-KFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 154 (236)
T ss_pred CCCCCceEEECCCCCEEeHH-HhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHH
Confidence 34467777777777765433 33689999999999999999999999999999986 48999998641 1
Q ss_pred HhHH-HhCC----------------------------------CccccEEEEE-eCCeeEEEEecCCcCcHHHHHHHHHH
Q psy17832 119 TDLA-MDYQ----------------------------------VSSVPVLIRM-KDGREQDRFVGFQKSNLEELEAFVTN 162 (189)
Q Consensus 119 ~~~~-~~~~----------------------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~~~l~~~l~~ 162 (189)
.+++ ++++ |...|+.+++ ++|+++.++.|..+. ++|+..|++
T Consensus 155 ~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~--~~le~~I~~ 232 (236)
T PLN02399 155 KQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSP--FQIEKDIQK 232 (236)
T ss_pred HHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCH--HHHHHHHHH
Confidence 1222 2222 1234888888 999999999999888 899999999
Q ss_pred hcC
Q psy17832 163 AEK 165 (189)
Q Consensus 163 ~l~ 165 (189)
+|+
T Consensus 233 lL~ 235 (236)
T PLN02399 233 LLA 235 (236)
T ss_pred Hhc
Confidence 884
No 71
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.67 E-value=1.4e-16 Score=109.76 Aligned_cols=86 Identities=28% Similarity=0.522 Sum_probs=67.3
Q ss_pred hCCCcEEEEEecCCChhhhhhhHHHHH---HHHHccCceEEEEEEcCcc--------------------HhHHHhCCCcc
Q psy17832 73 QASTPVIVDFFAKWCDPCKLMAPCLEA---IVERMNGKVQLAKVDVDLM--------------------TDLAMDYQVSS 129 (189)
Q Consensus 73 ~~~k~vvv~f~a~wC~~C~~~~p~l~~---l~~~~~~~v~~~~vd~d~~--------------------~~~~~~~~v~~ 129 (189)
.+++++||+||++||++|+.+.+.+.+ +.+.+.+++.++.++++.. .++.++|||++
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 368999999999999999999999985 4445555788888888653 35889999999
Q ss_pred ccEEEEE-eCCeeEEEEecCCcCcHHHHHHHH
Q psy17832 130 VPVLIRM-KDGREQDRFVGFQKSNLEELEAFV 160 (189)
Q Consensus 130 ~Pt~~~~-~~G~~~~~~~G~~~~~~~~l~~~l 160 (189)
+||++++ .+|+++.++.|..+. ++|.++|
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~--~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSP--EELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--H--HHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCH--HHHHhhC
Confidence 9999999 699999999999998 8888765
No 72
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.67 E-value=4.2e-16 Score=112.34 Aligned_cols=106 Identities=31% Similarity=0.519 Sum_probs=82.0
Q ss_pred CCCCCeEEe--cCHHHHHHHHHhCCCcEEEEEecC-CChhhhhhhHHHHHHHHHccC-ceEEEEEEcCc-----------
Q psy17832 53 EAPSTSFQI--TDQKEFEAKVKQASTPVIVDFFAK-WCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDL----------- 117 (189)
Q Consensus 53 ~~~~~~~~~--~~~~~~~~~~~~~~k~vvv~f~a~-wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~----------- 117 (189)
.+|++.++. .+++.+... ..++|++||+||++ ||++|+..+|.+.+++++|++ ++.++.|..+.
T Consensus 5 ~~P~~~~~~~~~~g~~~~l~-~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~ 83 (146)
T PF08534_consen 5 KAPDFSLKDLDLDGKPVSLS-DFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKY 83 (146)
T ss_dssp B--CCEEEEEETTSEEEEGG-GGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHT
T ss_pred CCCCeEEEeecCCCCEecHH-HhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhh
Confidence 356677754 677766543 34699999999999 999999999999999998776 48888877643
Q ss_pred ----------cHhHHHhCCCc---------cccEEEEE-eCCeeEEEEecCCcCcHHHHHHH
Q psy17832 118 ----------MTDLAMDYQVS---------SVPVLIRM-KDGREQDRFVGFQKSNLEELEAF 159 (189)
Q Consensus 118 ----------~~~~~~~~~v~---------~~Pt~~~~-~~G~~~~~~~G~~~~~~~~l~~~ 159 (189)
...+.+.|++. ++|+++++ ++|+++.++.|..+.+..++++.
T Consensus 84 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~~~~~~~~~~ 145 (146)
T PF08534_consen 84 GINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDPDEESDLEAV 145 (146)
T ss_dssp TTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBTTSHHSHHHH
T ss_pred CCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCCCCCCChhhc
Confidence 33688999998 99999888 99999999999887213555543
No 73
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.66 E-value=5.9e-16 Score=141.75 Aligned_cols=90 Identities=23% Similarity=0.338 Sum_probs=79.3
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHccCc-eEEEEEEc---------------------------CccHhHHHhC
Q psy17832 74 ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGK-VQLAKVDV---------------------------DLMTDLAMDY 125 (189)
Q Consensus 74 ~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~---------------------------d~~~~~~~~~ 125 (189)
++|+|||+|||+||++|+.++|.|++++++|+++ +.++.|.. |....+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 6899999999999999999999999999999874 88887742 2234577899
Q ss_pred CCccccEEEEE-eCCeeEEEEecCCcCcHHHHHHHHHHhcC
Q psy17832 126 QVSSVPVLIRM-KDGREQDRFVGFQKSNLEELEAFVTNAEK 165 (189)
Q Consensus 126 ~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~~~l~~~l~~~l~ 165 (189)
+|.++|++++| ++|+++.++.|.... +.|.++|++++.
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~--~~l~~~l~~~l~ 537 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHR--KDLDDLVEAALQ 537 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCH--HHHHHHHHHHHH
Confidence 99999999999 899999999998888 899999998876
No 74
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.66 E-value=8.8e-16 Score=129.58 Aligned_cols=108 Identities=23% Similarity=0.482 Sum_probs=91.5
Q ss_pred eEEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccC---ceEEEEEEcCccHhHHHhCCCccccEEE
Q psy17832 58 SFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG---KVQLAKVDVDLMTDLAMDYQVSSVPVLI 134 (189)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~~~~~~v~~~Pt~~ 134 (189)
.+..+++++|...+...++.+||+||++||++|+.+.|.++++++.+.+ ++.|+.+|++.+. +.. |+|.++|+++
T Consensus 347 ~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~ 424 (462)
T TIGR01130 347 PVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIK 424 (462)
T ss_pred ccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEE
Confidence 3455678999988778899999999999999999999999999999987 6999999999764 344 9999999999
Q ss_pred EEeCCeeE--EEEecCCcCcHHHHHHHHHHhcCCCCC
Q psy17832 135 RMKDGREQ--DRFVGFQKSNLEELEAFVTNAEKPAET 169 (189)
Q Consensus 135 ~~~~G~~~--~~~~G~~~~~~~~l~~~l~~~l~~~~~ 169 (189)
+|++|+.. .++.|..+. +.|.+||.+.....-+
T Consensus 425 ~~~~~~~~~~~~~~g~~~~--~~l~~~l~~~~~~~~~ 459 (462)
T TIGR01130 425 FVPAGKKSEPVPYDGDRTL--EDFSKFIAKHATFPLE 459 (462)
T ss_pred EEeCCCCcCceEecCcCCH--HHHHHHHHhcCCCCCc
Confidence 99777653 567887777 9999999988865443
No 75
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.66 E-value=8.3e-16 Score=102.88 Aligned_cols=67 Identities=30% Similarity=0.689 Sum_probs=57.5
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHcc--CceEEEEEEcCccH-------------------------hHHHhCCC
Q psy17832 75 STPVIVDFFAKWCDPCKLMAPCLEAIVERMN--GKVQLAKVDVDLMT-------------------------DLAMDYQV 127 (189)
Q Consensus 75 ~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~~~-------------------------~~~~~~~v 127 (189)
||+++|+||++||++|+.+.|.|.+++++|+ +++.|+.|..|+.. .+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 6899999999999999999999999999999 68999999887543 48889999
Q ss_pred ccccEEEEE-eCCee
Q psy17832 128 SSVPVLIRM-KDGRE 141 (189)
Q Consensus 128 ~~~Pt~~~~-~~G~~ 141 (189)
.++|+++++ ++|++
T Consensus 81 ~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 81 NGIPTLVLLDPDGKI 95 (95)
T ss_dssp TSSSEEEEEETTSBE
T ss_pred CcCCEEEEECCCCCC
Confidence 999999999 78875
No 76
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.66 E-value=1.8e-15 Score=106.05 Aligned_cols=100 Identities=15% Similarity=0.179 Sum_probs=75.6
Q ss_pred CHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHH---HHHHHHccCceEEEEEEcCccHhHHH--------hCCCcccc
Q psy17832 63 DQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCL---EAIVERMNGKVQLAKVDVDLMTDLAM--------DYQVSSVP 131 (189)
Q Consensus 63 ~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~~~--------~~~v~~~P 131 (189)
+.+.+... ...+|+|+|+|+++||++|+.+.+.. .++.+.+..++.++.+|.++.+++.+ .|++.++|
T Consensus 4 ~~eal~~A-k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~P 82 (124)
T cd02955 4 GEEAFEKA-RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWP 82 (124)
T ss_pred CHHHHHHH-HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCC
Confidence 44556655 67899999999999999999998743 35666666689999999998887655 36899999
Q ss_pred EEEEE-eCCeeEEEEecCCcC---cHHHHHHHHHHh
Q psy17832 132 VLIRM-KDGREQDRFVGFQKS---NLEELEAFVTNA 163 (189)
Q Consensus 132 t~~~~-~~G~~~~~~~G~~~~---~~~~l~~~l~~~ 163 (189)
+++|+ .+|+++.+..+.... +...+..+++++
T Consensus 83 t~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 83 LNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred EEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 99999 899999777655221 224555555544
No 77
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.65 E-value=7.3e-16 Score=116.83 Aligned_cols=113 Identities=9% Similarity=0.058 Sum_probs=84.0
Q ss_pred CCCCCeEEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCc-------c----Hh
Q psy17832 53 EAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDL-------M----TD 120 (189)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~-------~----~~ 120 (189)
.++++.+...+++.+... ..+|+++||+||++||++|+.++|.|++++++|.+ ++.++.|++++ . ..
T Consensus 18 ~~pdf~l~d~~G~~vsL~-~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~ 96 (199)
T PTZ00056 18 SIYDYTVKTLEGTTVPMS-SLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRK 96 (199)
T ss_pred CCCceEEECCCCCEEeHH-HhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHH
Confidence 356777776666655433 33689999999999999999999999999999986 49999998642 1 12
Q ss_pred HHHhCCC------------------------------------cccc---EEEEE-eCCeeEEEEecCCcCcHHHHHHHH
Q psy17832 121 LAMDYQV------------------------------------SSVP---VLIRM-KDGREQDRFVGFQKSNLEELEAFV 160 (189)
Q Consensus 121 ~~~~~~v------------------------------------~~~P---t~~~~-~~G~~~~~~~G~~~~~~~~l~~~l 160 (189)
+.+++++ ..+| +.+++ ++|+++.++.|..+. +.+.+.|
T Consensus 97 f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~--~~l~~~I 174 (199)
T PTZ00056 97 FNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEP--LELEKKI 174 (199)
T ss_pred HHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCH--HHHHHHH
Confidence 3444432 1122 45566 999999999998887 8899999
Q ss_pred HHhcCCCC
Q psy17832 161 TNAEKPAE 168 (189)
Q Consensus 161 ~~~l~~~~ 168 (189)
++++++..
T Consensus 175 ~~ll~~~~ 182 (199)
T PTZ00056 175 AELLGVKD 182 (199)
T ss_pred HHHHHHHH
Confidence 99886543
No 78
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.65 E-value=1.1e-15 Score=117.33 Aligned_cols=91 Identities=24% Similarity=0.381 Sum_probs=78.4
Q ss_pred CCCcEEEEEec---CCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeEE-EEecC
Q psy17832 74 ASTPVIVDFFA---KWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQD-RFVGF 148 (189)
Q Consensus 74 ~~k~vvv~f~a---~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~~-~~~G~ 148 (189)
++...++.|++ +||++|+.+.|.++++++.|+. .+.++.+|.++.++++++|+|.++||+++|++|+.+. ++.|.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~ 97 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGI 97 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeec
Confidence 34556777888 9999999999999999999963 3567777777999999999999999999999999884 89999
Q ss_pred CcCcHHHHHHHHHHhcCC
Q psy17832 149 QKSNLEELEAFVTNAEKP 166 (189)
Q Consensus 149 ~~~~~~~l~~~l~~~l~~ 166 (189)
.+. +++..+|+.++.-
T Consensus 98 ~~~--~~l~~~i~~~~~~ 113 (215)
T TIGR02187 98 PAG--YEFAALIEDIVRV 113 (215)
T ss_pred CCH--HHHHHHHHHHHHh
Confidence 888 8999999988643
No 79
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.65 E-value=6.3e-16 Score=109.82 Aligned_cols=72 Identities=25% Similarity=0.493 Sum_probs=60.6
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHccC---ceEEEEEEcCccH-------------------------hHHHhC
Q psy17832 74 ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG---KVQLAKVDVDLMT-------------------------DLAMDY 125 (189)
Q Consensus 74 ~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~-------------------------~~~~~~ 125 (189)
+||++||+||++||++|+.++|.|+++++++++ ++.++.|++|... .+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 589999999999999999999999999998875 4777777776532 456679
Q ss_pred CCccccEEEEE-eCCeeEEEE
Q psy17832 126 QVSSVPVLIRM-KDGREQDRF 145 (189)
Q Consensus 126 ~v~~~Pt~~~~-~~G~~~~~~ 145 (189)
+|.++|+++++ ++|+++.+.
T Consensus 96 ~v~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred CCCCCCEEEEECCCCCEEchh
Confidence 99999999999 789887543
No 80
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.65 E-value=7e-16 Score=109.31 Aligned_cols=71 Identities=24% Similarity=0.526 Sum_probs=60.1
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHccC---ceEEEEEEcCcc------------------------HhHHHhCC
Q psy17832 74 ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG---KVQLAKVDVDLM------------------------TDLAMDYQ 126 (189)
Q Consensus 74 ~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~------------------------~~~~~~~~ 126 (189)
+++++||+||++||++|+.++|.|+++++++.+ ++.++.|++|.. ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 588999999999999999999999999888864 477777776643 35778999
Q ss_pred CccccEEEEE-eCCeeEEE
Q psy17832 127 VSSVPVLIRM-KDGREQDR 144 (189)
Q Consensus 127 v~~~Pt~~~~-~~G~~~~~ 144 (189)
|.++|++++| ++|+++.+
T Consensus 97 v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 97 IEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCEEEEECCCCCEEcc
Confidence 9999999999 79988754
No 81
>KOG0190|consensus
Probab=99.63 E-value=6.9e-16 Score=128.85 Aligned_cols=104 Identities=25% Similarity=0.526 Sum_probs=87.4
Q ss_pred eEEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccC--ceEEEEEEcCccHhHHHhCCCccccEEEE
Q psy17832 58 SFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG--KVQLAKVDVDLMTDLAMDYQVSSVPVLIR 135 (189)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~ 135 (189)
.++++-+++|+..+.+.+|-|+|.||||||+||+++.|.+++|++.|++ ++.+++||.+.+. ...+.++++||+++
T Consensus 367 pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~~~~~~~~fPTI~~ 444 (493)
T KOG0190|consen 367 PVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND--VPSLKVDGFPTILF 444 (493)
T ss_pred CeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--CccccccccceEEE
Confidence 4566678999999889999999999999999999999999999999987 5999999998875 34557788999999
Q ss_pred EeCCee--EEEEecCCcCcHHHHHHHHHHhcC
Q psy17832 136 MKDGRE--QDRFVGFQKSNLEELEAFVTNAEK 165 (189)
Q Consensus 136 ~~~G~~--~~~~~G~~~~~~~~l~~~l~~~l~ 165 (189)
|+.|.. .-.+.|.+.. +.|..+|.+.-.
T Consensus 445 ~pag~k~~pv~y~g~R~l--e~~~~fi~~~a~ 474 (493)
T KOG0190|consen 445 FPAGHKSNPVIYNGDRTL--EDLKKFIKKSAT 474 (493)
T ss_pred ecCCCCCCCcccCCCcch--HHHHhhhccCCC
Confidence 965542 3456777777 889988887665
No 82
>PLN02412 probable glutathione peroxidase
Probab=99.63 E-value=1.6e-15 Score=111.99 Aligned_cols=112 Identities=9% Similarity=0.102 Sum_probs=85.9
Q ss_pred CCCCCeEEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCc--------cHhH--
Q psy17832 53 EAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDL--------MTDL-- 121 (189)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~--------~~~~-- 121 (189)
.++++.+...+++.+... ..++|++||+||++||++|+.++|.|++++++|++ ++.++.|+++. ..++
T Consensus 8 ~~pdf~l~d~~G~~v~l~-~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~ 86 (167)
T PLN02412 8 SIYDFTVKDIGGNDVSLN-QYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQ 86 (167)
T ss_pred CCCceEEECCCCCEEeHH-HhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHH
Confidence 467777777777655432 23689999999999999999999999999999986 49999998642 1111
Q ss_pred --HHhCC----------------------------------CccccEEEEE-eCCeeEEEEecCCcCcHHHHHHHHHHhc
Q psy17832 122 --AMDYQ----------------------------------VSSVPVLIRM-KDGREQDRFVGFQKSNLEELEAFVTNAE 164 (189)
Q Consensus 122 --~~~~~----------------------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~~~l~~~l~~~l 164 (189)
.++++ |...|+.+++ ++|+++.++.|..+. +++...|+++|
T Consensus 87 ~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~--~~l~~~i~~~l 164 (167)
T PLN02412 87 TVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSP--LKIEKDIQNLL 164 (167)
T ss_pred HHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCH--HHHHHHHHHHH
Confidence 12211 3345888888 999999999999988 99999999988
Q ss_pred CCC
Q psy17832 165 KPA 167 (189)
Q Consensus 165 ~~~ 167 (189)
.++
T Consensus 165 ~~~ 167 (167)
T PLN02412 165 GQA 167 (167)
T ss_pred hhC
Confidence 653
No 83
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.63 E-value=3.1e-15 Score=129.43 Aligned_cols=102 Identities=23% Similarity=0.491 Sum_probs=84.7
Q ss_pred EecCHHHHHHHHH---hCCCcEEEEEecCCChhhhhhhHHH---HHHHHHccCceEEEEEEcCcc----HhHHHhCCCcc
Q psy17832 60 QITDQKEFEAKVK---QASTPVIVDFFAKWCDPCKLMAPCL---EAIVERMNGKVQLAKVDVDLM----TDLAMDYQVSS 129 (189)
Q Consensus 60 ~~~~~~~~~~~~~---~~~k~vvv~f~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~----~~~~~~~~v~~ 129 (189)
...+.+++++.+. .++|+|+|+||++||++|+.+.+.+ .++.++++ ++.++++|++++ .++.++|+|.+
T Consensus 456 ~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g 534 (571)
T PRK00293 456 RIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLG 534 (571)
T ss_pred ecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCC
Confidence 3446788877654 3589999999999999999998875 66777775 689999999753 57899999999
Q ss_pred ccEEEEE-eCCeeE--EEEecCCcCcHHHHHHHHHHhc
Q psy17832 130 VPVLIRM-KDGREQ--DRFVGFQKSNLEELEAFVTNAE 164 (189)
Q Consensus 130 ~Pt~~~~-~~G~~~--~~~~G~~~~~~~~l~~~l~~~l 164 (189)
+||+++| ++|+++ .++.|..+. +++.++|+++.
T Consensus 535 ~Pt~~~~~~~G~~i~~~r~~G~~~~--~~f~~~L~~~~ 570 (571)
T PRK00293 535 LPTILFFDAQGQEIPDARVTGFMDA--AAFAAHLRQLQ 570 (571)
T ss_pred CCEEEEECCCCCCcccccccCCCCH--HHHHHHHHHhc
Confidence 9999999 689984 688898888 89999998764
No 84
>PHA02125 thioredoxin-like protein
Probab=99.63 E-value=4.3e-15 Score=95.35 Aligned_cols=72 Identities=32% Similarity=0.619 Sum_probs=59.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeEEEEecCCcCcHHHHHH
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEA 158 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~l~~ 158 (189)
+++||++||++|+.+.|.|+++ .+.++.||.++..+++++|+|.++||++ +|+.+.++.|... +..+|++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~------~~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~-~~~~l~~ 71 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV------EYTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPR-NVAELKE 71 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH------hheEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCC-cHHHHHH
Confidence 7899999999999999999765 2568899999999999999999999987 7888889999733 2245544
Q ss_pred HH
Q psy17832 159 FV 160 (189)
Q Consensus 159 ~l 160 (189)
.|
T Consensus 72 ~~ 73 (75)
T PHA02125 72 KL 73 (75)
T ss_pred Hh
Confidence 43
No 85
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.62 E-value=7.5e-15 Score=116.10 Aligned_cols=89 Identities=25% Similarity=0.332 Sum_probs=72.7
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCc-----------cHhHHHhCCCccccEEEEEe-CCe-
Q psy17832 74 ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDL-----------MTDLAMDYQVSSVPVLIRMK-DGR- 140 (189)
Q Consensus 74 ~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-----------~~~~~~~~~v~~~Pt~~~~~-~G~- 140 (189)
.++++||+||++||++|+.+.|.|++++++|+ +.++.|++|. +..++++|||.++|++++++ +|+
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 58999999999999999999999999999986 5565666654 34688999999999999994 354
Q ss_pred eEEEEecCCcCcHHHHHHHHHHhcCC
Q psy17832 141 EQDRFVGFQKSNLEELEAFVTNAEKP 166 (189)
Q Consensus 141 ~~~~~~G~~~~~~~~l~~~l~~~l~~ 166 (189)
+.....|..+. ++|.+.|..+...
T Consensus 243 v~~v~~G~~s~--~eL~~~i~~~a~~ 266 (271)
T TIGR02740 243 FTPIGFGVMSA--DELVDRILLAAHP 266 (271)
T ss_pred EEEEEeCCCCH--HHHHHHHHHHhcc
Confidence 44455688888 8898888877653
No 86
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.62 E-value=9.6e-15 Score=108.09 Aligned_cols=84 Identities=13% Similarity=0.207 Sum_probs=70.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCcc-------------HhHHHhCCC--ccccEEEEE-eCCeeE
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM-------------TDLAMDYQV--SSVPVLIRM-KDGREQ 142 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-------------~~~~~~~~v--~~~Pt~~~~-~~G~~~ 142 (189)
||+||++||++|++++|.|++++++|+ +.++.|++|.. ..+...|++ .++|+.+++ ++|+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 778999999999999999999999985 66666665532 236678995 699999999 899986
Q ss_pred -EEEecCCcCcHHHHHHHHHHhcCC
Q psy17832 143 -DRFVGFQKSNLEELEAFVTNAEKP 166 (189)
Q Consensus 143 -~~~~G~~~~~~~~l~~~l~~~l~~ 166 (189)
..+.|..+. ++|.+.|.+++..
T Consensus 151 ~~~~~G~~~~--~~L~~~I~~ll~~ 173 (181)
T PRK13728 151 LPLLQGATDA--AGFMARMDTVLQM 173 (181)
T ss_pred EEEEECCCCH--HHHHHHHHHHHhh
Confidence 579999998 8999999988854
No 87
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.62 E-value=4.4e-15 Score=103.86 Aligned_cols=98 Identities=19% Similarity=0.344 Sum_probs=73.4
Q ss_pred CCeEEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEE---------------------
Q psy17832 56 STSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVD--------------------- 114 (189)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd--------------------- 114 (189)
++.+...+++.+... ..++++++|+||++||++|+.+.|.|.++++++. +..+.+|
T Consensus 2 ~f~l~~~~g~~~~~~-~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 78 (123)
T cd03011 2 LFTATTLDGEQFDLE-SLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVI 78 (123)
T ss_pred CceeecCCCCEeeHH-HhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEE
Confidence 445555566655544 3457899999999999999999999999987742 2222222
Q ss_pred cCccHhHHHhCCCccccEEEEE-eCCeeEEEEecCCcCcHHHHHHH
Q psy17832 115 VDLMTDLAMDYQVSSVPVLIRM-KDGREQDRFVGFQKSNLEELEAF 159 (189)
Q Consensus 115 ~d~~~~~~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~~~l~~~ 159 (189)
.|.+.+++++|+|.++|+++++ ++| ++.++.|..+. +.|.+.
T Consensus 79 ~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~~~g~~~~--~~~~~~ 121 (123)
T cd03011 79 NDPDGVISARWGVSVTPAIVIVDPGG-IVFVTTGVTSE--WGLRLR 121 (123)
T ss_pred ECCCcHHHHhCCCCcccEEEEEcCCC-eEEEEeccCCH--HHHHhh
Confidence 2345579999999999999999 555 88899999988 777653
No 88
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.62 E-value=1.8e-15 Score=104.49 Aligned_cols=71 Identities=21% Similarity=0.412 Sum_probs=57.1
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCc--------------------cHhHHHhCCCccccEE
Q psy17832 74 ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDL--------------------MTDLAMDYQVSSVPVL 133 (189)
Q Consensus 74 ~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~--------------------~~~~~~~~~v~~~Pt~ 133 (189)
+++++||+||++||++|+.+.|.++++++++.+++.++.+.-+. ..++.++|++..+|+.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 48999999999999999999999999999887777666652111 1246778899999999
Q ss_pred EEE-eCCeeEEE
Q psy17832 134 IRM-KDGREQDR 144 (189)
Q Consensus 134 ~~~-~~G~~~~~ 144 (189)
+++ ++|+++.+
T Consensus 100 ~vid~~G~v~~~ 111 (114)
T cd02967 100 VLLDEAGVIAAK 111 (114)
T ss_pred EEECCCCeEEec
Confidence 999 78988753
No 89
>KOG0912|consensus
Probab=99.60 E-value=2e-15 Score=117.65 Aligned_cols=101 Identities=25% Similarity=0.498 Sum_probs=88.1
Q ss_pred HHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHc----c-CceEEEEEEcCccHhHHHhCCCccccEEEEEeCC
Q psy17832 65 KEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERM----N-GKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDG 139 (189)
Q Consensus 65 ~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~----~-~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G 139 (189)
++++.. .....+|+|+|||+||+..+.++|.|++.++.+ + ++++++.|||+....++.+|.|..|||+-+|++|
T Consensus 4 ~N~~~i-l~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG 82 (375)
T KOG0912|consen 4 ENIDSI-LDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNG 82 (375)
T ss_pred ccHHHh-hccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeecc
Confidence 344544 455889999999999999999999998877655 4 4799999999999999999999999999999999
Q ss_pred eeEE-EEecCCcCcHHHHHHHHHHhcCCCC
Q psy17832 140 REQD-RFVGFQKSNLEELEAFVTNAEKPAE 168 (189)
Q Consensus 140 ~~~~-~~~G~~~~~~~~l~~~l~~~l~~~~ 168 (189)
.... .|.|.++. +.|.++|++.++...
T Consensus 83 ~~~~rEYRg~RsV--eaL~efi~kq~s~~i 110 (375)
T KOG0912|consen 83 EMMKREYRGQRSV--EALIEFIEKQLSDPI 110 (375)
T ss_pred chhhhhhccchhH--HHHHHHHHHHhccHH
Confidence 9886 78899999 999999999987553
No 90
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.60 E-value=1.7e-14 Score=110.74 Aligned_cols=82 Identities=24% Similarity=0.327 Sum_probs=71.4
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeEEEEecCCcCcH
Q psy17832 75 STP-VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNL 153 (189)
Q Consensus 75 ~k~-vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~ 153 (189)
+++ +|+.||++||++|+.+.+.++++..++ +++.+..+|.+..++++.+|+|.++||++++++|+. +.|..+.
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~-- 205 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-DKILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAYPE-- 205 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-CceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCCCH--
Confidence 444 455599999999999999999998885 489999999999999999999999999999988863 7888888
Q ss_pred HHHHHHHHH
Q psy17832 154 EELEAFVTN 162 (189)
Q Consensus 154 ~~l~~~l~~ 162 (189)
++|.++|.+
T Consensus 206 ~~l~~~l~~ 214 (215)
T TIGR02187 206 EQFLEYILS 214 (215)
T ss_pred HHHHHHHHh
Confidence 899888875
No 91
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.59 E-value=6.7e-15 Score=100.55 Aligned_cols=85 Identities=34% Similarity=0.622 Sum_probs=71.4
Q ss_pred cCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHcc-CceEEEEEEcCcc----------------------
Q psy17832 62 TDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMN-GKVQLAKVDVDLM---------------------- 118 (189)
Q Consensus 62 ~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~---------------------- 118 (189)
.+++.+... ...+++++|+||++||++|+...+.+.++.+++. .++.++.|++|..
T Consensus 7 ~~g~~~~~~-~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (116)
T cd02966 7 LDGKPVSLS-DLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDP 85 (116)
T ss_pred CCCCEeehH-HcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcC
Confidence 344444433 3348899999999999999999999999999996 3699999999885
Q ss_pred -HhHHHhCCCccccEEEEE-eCCeeEEEEec
Q psy17832 119 -TDLAMDYQVSSVPVLIRM-KDGREQDRFVG 147 (189)
Q Consensus 119 -~~~~~~~~v~~~Pt~~~~-~~G~~~~~~~G 147 (189)
..+.+.|++.++|+++++ ++|+++.++.|
T Consensus 86 ~~~~~~~~~~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 86 DGELAKAYGVRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cchHHHhcCcCccceEEEECCCCcEEEEecC
Confidence 678999999999999999 79999988765
No 92
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.59 E-value=9.8e-15 Score=93.93 Aligned_cols=73 Identities=18% Similarity=0.361 Sum_probs=59.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeEEEEecCC-cCcHHHHH
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEELE 157 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~-~~~~~~l~ 157 (189)
.|.||++||++|+.+.|.++++.++++.++.|+.|| +.+.+.+|++.++|++++ +|+++ +.|.. .. ++|.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~--~~l~ 72 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSK--EEIK 72 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCH--HHHH
Confidence 478999999999999999999999998888888887 234478899999999999 99887 66753 33 4555
Q ss_pred HHH
Q psy17832 158 AFV 160 (189)
Q Consensus 158 ~~l 160 (189)
++|
T Consensus 73 ~~l 75 (76)
T TIGR00412 73 EIL 75 (76)
T ss_pred HHh
Confidence 554
No 93
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.58 E-value=1.3e-14 Score=102.14 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=64.6
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcC---------------------------ccHhHHHhC
Q psy17832 74 ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVD---------------------------LMTDLAMDY 125 (189)
Q Consensus 74 ~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d---------------------------~~~~~~~~~ 125 (189)
+++++||+||++||++|+..+|.|++++++|++ ++.++.|+.+ ....+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 589999999999999999999999999999985 5888887541 223577889
Q ss_pred CCccccEEEEE-eCCeeEEEEecC
Q psy17832 126 QVSSVPVLIRM-KDGREQDRFVGF 148 (189)
Q Consensus 126 ~v~~~Pt~~~~-~~G~~~~~~~G~ 148 (189)
++.++|++++| ++|+++..+.|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 99999999999 899999998885
No 94
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.57 E-value=1.7e-14 Score=108.56 Aligned_cols=108 Identities=19% Similarity=0.334 Sum_probs=76.0
Q ss_pred CCCCCeEEecCHHHHHHH-HHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEE-------------c---
Q psy17832 53 EAPSTSFQITDQKEFEAK-VKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVD-------------V--- 115 (189)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~-~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd-------------~--- 115 (189)
.++++.++..+++.+... ...++++++|+||++||++|+.+.|.+.++++++..++.++..| +
T Consensus 51 ~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~ 130 (189)
T TIGR02661 51 AAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGE 130 (189)
T ss_pred cCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcc
Confidence 356666776677655431 13368999999999999999999999999988765455554422 0
Q ss_pred --CccHhHHHhCCCccccEEEEE-eCCeeEEEEecCCcCcHHHHHHHHHHh
Q psy17832 116 --DLMTDLAMDYQVSSVPVLIRM-KDGREQDRFVGFQKSNLEELEAFVTNA 163 (189)
Q Consensus 116 --d~~~~~~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~~~l~~~l~~~ 163 (189)
....++.+.|++..+|+.+++ ++|+++.+.. .... +.++++|+.+
T Consensus 131 ~~~~~~~i~~~y~v~~~P~~~lID~~G~I~~~g~-~~~~--~~le~ll~~l 178 (189)
T TIGR02661 131 RYVVSAEIGMAFQVGKIPYGVLLDQDGKIRAKGL-TNTR--EHLESLLEAD 178 (189)
T ss_pred eeechhHHHHhccCCccceEEEECCCCeEEEccC-CCCH--HHHHHHHHHH
Confidence 113467889999999998888 8999886522 2233 5677776654
No 95
>KOG4277|consensus
Probab=99.57 E-value=6.8e-15 Score=114.77 Aligned_cols=88 Identities=19% Similarity=0.491 Sum_probs=77.8
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHccC---ceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeEEEEecCCc
Q psy17832 74 ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG---KVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQK 150 (189)
Q Consensus 74 ~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~ 150 (189)
.+..++|+||||||++|+++.|.+.++..++++ -+.+.++|+...+.++.+|+|++|||+.||++|..+. +.|.+.
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~d-YRG~R~ 120 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAID-YRGGRE 120 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeee-cCCCcc
Confidence 467899999999999999999999998877765 4899999999999999999999999999999887764 678888
Q ss_pred CcHHHHHHHHHHhc
Q psy17832 151 SNLEELEAFVTNAE 164 (189)
Q Consensus 151 ~~~~~l~~~l~~~l 164 (189)
. +.|.++..+..
T Consensus 121 K--d~iieFAhR~a 132 (468)
T KOG4277|consen 121 K--DAIIEFAHRCA 132 (468)
T ss_pred H--HHHHHHHHhcc
Confidence 8 88888877654
No 96
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.56 E-value=3.2e-14 Score=103.53 Aligned_cols=106 Identities=14% Similarity=0.105 Sum_probs=77.8
Q ss_pred CCeEEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccC-ceEEEEEEc--------Ccc---HhHHH
Q psy17832 56 STSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDV--------DLM---TDLAM 123 (189)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~--------d~~---~~~~~ 123 (189)
++.+...+++.+... ..+||++||+||++||++|+..+|.|++++++|++ ++.++.|++ +.. ..+.+
T Consensus 4 ~f~l~~~~G~~~~l~-~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~ 82 (153)
T TIGR02540 4 SFEVKDARGRTVSLE-KYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFAR 82 (153)
T ss_pred cceeECCCCCEecHH-HhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHH
Confidence 445555566555433 33689999999999999999999999999999986 689999985 111 12232
Q ss_pred h-CCC--------------------------ccccE----EEEE-eCCeeEEEEecCCcCcHHHHHHHHHHhc
Q psy17832 124 D-YQV--------------------------SSVPV----LIRM-KDGREQDRFVGFQKSNLEELEAFVTNAE 164 (189)
Q Consensus 124 ~-~~v--------------------------~~~Pt----~~~~-~~G~~~~~~~G~~~~~~~~l~~~l~~~l 164 (189)
+ +++ .++|+ .+++ ++|+++.++.|..+. +.|...|++++
T Consensus 83 ~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~--~~l~~~i~~l~ 153 (153)
T TIGR02540 83 RNYGVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPV--EEIRPEITALV 153 (153)
T ss_pred HhcCCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCH--HHHHHHHHHhC
Confidence 2 221 13675 5555 999999999999888 88998888764
No 97
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.54 E-value=2.8e-14 Score=103.72 Aligned_cols=101 Identities=19% Similarity=0.207 Sum_probs=72.6
Q ss_pred CCCeEEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCc--------c---HhHH
Q psy17832 55 PSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDL--------M---TDLA 122 (189)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~--------~---~~~~ 122 (189)
+++.+...+++.+... ..++|+|||+||++||+ |+.++|.|++++++|++ ++.++.|+++. . .++.
T Consensus 3 ~~f~l~d~~G~~v~l~-~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~ 80 (152)
T cd00340 3 YDFSVKDIDGEPVSLS-KYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFC 80 (152)
T ss_pred ceeEEECCCCCEEeHH-HhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHH
Confidence 4555565566554433 23589999999999999 99999999999999975 59999987642 1 1233
Q ss_pred Hh-CC-----------------------Ccccc-----------EEEEE-eCCeeEEEEecCCcCcHHHHHHH
Q psy17832 123 MD-YQ-----------------------VSSVP-----------VLIRM-KDGREQDRFVGFQKSNLEELEAF 159 (189)
Q Consensus 123 ~~-~~-----------------------v~~~P-----------t~~~~-~~G~~~~~~~G~~~~~~~~l~~~ 159 (189)
++ ++ +.++| +.+++ ++|+++.++.|..+. +.|.+.
T Consensus 81 ~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~--~~l~~~ 151 (152)
T cd00340 81 ETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDP--EELEKD 151 (152)
T ss_pred HHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCH--HHHHhc
Confidence 22 22 23456 56777 999999999999877 666543
No 98
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.54 E-value=2.1e-13 Score=95.83 Aligned_cols=104 Identities=12% Similarity=0.165 Sum_probs=87.2
Q ss_pred cCHHHHHHHHHhCCCcEEEEEec--CCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCccHhHHHhCCCccccEEEEEeC
Q psy17832 62 TDQKEFEAKVKQASTPVIVDFFA--KWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKD 138 (189)
Q Consensus 62 ~~~~~~~~~~~~~~k~vvv~f~a--~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~ 138 (189)
++..+++..+. .+...||.|-. ..++.+-...-.|.+++++|.+ ++.|++||+|++++++.+|||.++||++||++
T Consensus 22 ~~~~~~~~~~~-~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~Fkd 100 (132)
T PRK11509 22 VSESRLDDWLT-QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTG 100 (132)
T ss_pred cccccHHHHHh-CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEEC
Confidence 34466666643 34445554543 3489999999999999999984 59999999999999999999999999999999
Q ss_pred CeeEEEEecCCcCcHHHHHHHHHHhcCCCC
Q psy17832 139 GREQDRFVGFQKSNLEELEAFVTNAEKPAE 168 (189)
Q Consensus 139 G~~~~~~~G~~~~~~~~l~~~l~~~l~~~~ 168 (189)
|+++.++.|..+. +.+.++|++++....
T Consensus 101 Gk~v~~i~G~~~k--~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 101 GNYRGVLNGIHPW--AELINLMRGLVEPQQ 128 (132)
T ss_pred CEEEEEEeCcCCH--HHHHHHHHHHhcCcC
Confidence 9999999999999 999999999997644
No 99
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.52 E-value=2.4e-13 Score=94.17 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=78.9
Q ss_pred HhCCCcEEEEEecCCChhhhhhhHHH---HHHHHHccCceEEEEEEcC--ccHhHHHhCCCccccEEEEE-e-CCeeEEE
Q psy17832 72 KQASTPVIVDFFAKWCDPCKLMAPCL---EAIVERMNGKVQLAKVDVD--LMTDLAMDYQVSSVPVLIRM-K-DGREQDR 144 (189)
Q Consensus 72 ~~~~k~vvv~f~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d--~~~~~~~~~~v~~~Pt~~~~-~-~G~~~~~ 144 (189)
..++|+++|+|+++||++|+.+...+ .++.+.+..++.++.+|.+ +...++..|++.++|+++++ . +|+++.+
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~ 93 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKV 93 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEE
Confidence 55799999999999999999987654 4566666668889999987 45578999999999999999 5 8999999
Q ss_pred EecCCcCcHHHHHHHHHHhcC
Q psy17832 145 FVGFQKSNLEELEAFVTNAEK 165 (189)
Q Consensus 145 ~~G~~~~~~~~l~~~l~~~l~ 165 (189)
+.|..+. +.+...|+++..
T Consensus 94 ~~G~~~~--~~f~~~L~~~~~ 112 (114)
T cd02958 94 WSGNITP--EDLLSQLIEFLE 112 (114)
T ss_pred EcCCCCH--HHHHHHHHHHHh
Confidence 9999999 999999888754
No 100
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.52 E-value=1.7e-13 Score=101.48 Aligned_cols=116 Identities=17% Similarity=0.229 Sum_probs=85.1
Q ss_pred CCCeEEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCcc---------------
Q psy17832 55 PSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDLM--------------- 118 (189)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~--------------- 118 (189)
+++.+...+++.+...-..+++++||+||++||+.|....+.|.+++++|++ ++.|+.|..|..
T Consensus 5 p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~ 84 (171)
T cd02969 5 PDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKA 84 (171)
T ss_pred CCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHH
Confidence 4444444444444333123688999999999999999999999999999974 699999887641
Q ss_pred --------------HhHHHhCCCccccEEEEE-eCCeeEEEEe------cC-CcCcHHHHHHHHHHhcCCCCCC
Q psy17832 119 --------------TDLAMDYQVSSVPVLIRM-KDGREQDRFV------GF-QKSNLEELEAFVTNAEKPAETS 170 (189)
Q Consensus 119 --------------~~~~~~~~v~~~Pt~~~~-~~G~~~~~~~------G~-~~~~~~~l~~~l~~~l~~~~~~ 170 (189)
..+.+.|++..+|+++++ ++|+++.... +. ...+...+...|+.+|......
T Consensus 85 ~~~~~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 158 (171)
T cd02969 85 KEHGYPFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVP 158 (171)
T ss_pred HHCCCCceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCC
Confidence 146778999999999999 8999886531 11 1223478999999998766544
No 101
>KOG0191|consensus
Probab=99.52 E-value=6.1e-14 Score=116.35 Aligned_cols=104 Identities=27% Similarity=0.587 Sum_probs=89.5
Q ss_pred HHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeEEE
Q psy17832 65 KEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDR 144 (189)
Q Consensus 65 ~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~~~ 144 (189)
..|...+...+++++|+||++||++|+.+.|.+.++++.+++.+.+..||++.+.+++.+|+|+++||+.+|..|.....
T Consensus 37 ~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~ 116 (383)
T KOG0191|consen 37 DSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPID 116 (383)
T ss_pred cccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceee
Confidence 44444546678899999999999999999999999999999999999999999999999999999999999987754556
Q ss_pred EecCCcCcHHHHHHHHHHhcCCCCCC
Q psy17832 145 FVGFQKSNLEELEAFVTNAEKPAETS 170 (189)
Q Consensus 145 ~~G~~~~~~~~l~~~l~~~l~~~~~~ 170 (189)
+.|.... +.+..++...+......
T Consensus 117 ~~~~~~~--~~~~~~~~~~~~~~~~~ 140 (383)
T KOG0191|consen 117 YSGPRNA--ESLAEFLIKELEPSVKK 140 (383)
T ss_pred ccCcccH--HHHHHHHHHhhcccccc
Confidence 6776666 89999998888766644
No 102
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.51 E-value=9e-14 Score=103.42 Aligned_cols=81 Identities=17% Similarity=0.154 Sum_probs=64.0
Q ss_pred hCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEE------EEEEcCc-----------------------------
Q psy17832 73 QASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQL------AKVDVDL----------------------------- 117 (189)
Q Consensus 73 ~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~------~~vd~d~----------------------------- 117 (189)
..||+.||+|||+||++|+.+.|.+.++.++ ++.+ +.||.|+
T Consensus 57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~ 133 (184)
T TIGR01626 57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD 133 (184)
T ss_pred cCCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence 3599999999999999999999999999542 3444 6666654
Q ss_pred cHhHHHhCCCccccEE-EEE-eCCeeEEEEecCCcCcHHHHHH
Q psy17832 118 MTDLAMDYQVSSVPVL-IRM-KDGREQDRFVGFQKSNLEELEA 158 (189)
Q Consensus 118 ~~~~~~~~~v~~~Pt~-~~~-~~G~~~~~~~G~~~~~~~~l~~ 158 (189)
...+...|++.++|+. +++ ++|+++.++.|..+. +++.+
T Consensus 134 ~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~--ee~e~ 174 (184)
T TIGR01626 134 KGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSD--SDIQT 174 (184)
T ss_pred cchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCH--HHHHH
Confidence 2246678999999876 666 999999999999877 55544
No 103
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.50 E-value=1.5e-13 Score=103.00 Aligned_cols=110 Identities=10% Similarity=0.023 Sum_probs=80.0
Q ss_pred CCCCCeEEecCHHHHHHHHHhCCCcE-EEEEecCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCc-------c-H---
Q psy17832 53 EAPSTSFQITDQKEFEAKVKQASTPV-IVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDL-------M-T--- 119 (189)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~k~v-vv~f~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~-------~-~--- 119 (189)
.++++.+...+++.+... ..+||++ |+.||++||++|+.++|.|++++++|++ ++.++.|+++. . .
T Consensus 19 ~~p~f~l~d~~G~~vsLs-~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~ 97 (183)
T PTZ00256 19 SFFEFEAIDIDGQLVQLS-KFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIK 97 (183)
T ss_pred cccceEeEcCCCCEEeHH-HhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHH
Confidence 367777777777655433 3357765 4566999999999999999999999986 48999997631 0 1
Q ss_pred hH-HHh------------------------------------CCCccccE---EEEE-eCCeeEEEEecCCcCcHHHHHH
Q psy17832 120 DL-AMD------------------------------------YQVSSVPV---LIRM-KDGREQDRFVGFQKSNLEELEA 158 (189)
Q Consensus 120 ~~-~~~------------------------------------~~v~~~Pt---~~~~-~~G~~~~~~~G~~~~~~~~l~~ 158 (189)
.+ .++ +++.++|+ .+++ ++|+++.++.|..+. +.+.+
T Consensus 98 ~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~--~~l~~ 175 (183)
T PTZ00256 98 EYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNP--NEMIQ 175 (183)
T ss_pred HHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCH--HHHHH
Confidence 01 111 13457784 3555 999999999998887 88999
Q ss_pred HHHHhcC
Q psy17832 159 FVTNAEK 165 (189)
Q Consensus 159 ~l~~~l~ 165 (189)
.|.++|+
T Consensus 176 ~I~~ll~ 182 (183)
T PTZ00256 176 DIEKLLN 182 (183)
T ss_pred HHHHHhc
Confidence 9988874
No 104
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.49 E-value=2.6e-13 Score=85.00 Aligned_cols=62 Identities=24% Similarity=0.368 Sum_probs=55.0
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeE
Q psy17832 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQ 142 (189)
Q Consensus 78 vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~ 142 (189)
-|+.||++||++|+.+.+.|+++...+ +++.|..+|+++++++..+|++.++|++++ +|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~ 63 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVE 63 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEE
Confidence 467899999999999999999997765 479999999999999999999999999876 67654
No 105
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.45 E-value=4.5e-13 Score=95.66 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=77.4
Q ss_pred CCCeEEecCHHHHHHHHHhCCCcEEEEEe-cCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCc---------------
Q psy17832 55 PSTSFQITDQKEFEAKVKQASTPVIVDFF-AKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDL--------------- 117 (189)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~k~vvv~f~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~--------------- 117 (189)
+.+.+...+++.+... ..+++++||+|| +.||+.|....+.|.++++++.+ ++.++.|..|.
T Consensus 4 p~f~l~~~~g~~~~l~-~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~ 82 (140)
T cd03017 4 PDFTLPDQDGETVSLS-DLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPF 82 (140)
T ss_pred CCccccCCCCCEEeHH-HhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCc
Confidence 4444444444443322 224889999999 68999999999999999998875 57788776543
Q ss_pred ------cHhHHHhCCCccc---------cEEEEE-eCCeeEEEEecCCcCcHHHHHHHH
Q psy17832 118 ------MTDLAMDYQVSSV---------PVLIRM-KDGREQDRFVGFQKSNLEELEAFV 160 (189)
Q Consensus 118 ------~~~~~~~~~v~~~---------Pt~~~~-~~G~~~~~~~G~~~~~~~~l~~~l 160 (189)
...+.+.||+... |+++++ ++|+++..+.|.... +.+.+.+
T Consensus 83 ~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~--~~~~~~~ 139 (140)
T cd03017 83 PLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPK--GHAEEVL 139 (140)
T ss_pred eEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCCcc--chHHHHh
Confidence 3357888999888 898888 799999999999877 6665544
No 106
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.45 E-value=8.6e-13 Score=94.74 Aligned_cols=105 Identities=13% Similarity=0.194 Sum_probs=75.9
Q ss_pred CCCCeEEecCHHHHHHHHHhCCCcEEEEEecCC-ChhhhhhhHHHHHHHHHccCceEEEEEEcCcc--------------
Q psy17832 54 APSTSFQITDQKEFEAKVKQASTPVIVDFFAKW-CDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM-------------- 118 (189)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~k~vvv~f~a~w-C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-------------- 118 (189)
+|++.+...+++.+... ...+|++||+||++| |++|+..++.|++++++++ ++.|+.|+.|..
T Consensus 6 aP~f~l~~~~g~~~~l~-~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~ 83 (143)
T cd03014 6 APDFTLVTSDLSEVSLA-DFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDN 83 (143)
T ss_pred CCCcEEECCCCcEEeHH-HhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCC
Confidence 45566665555544322 235889999999998 6999999999999999985 788888887531
Q ss_pred ---------HhHHHhCCCcc------ccEEEEE-eCCeeEEEEecCCcCcHHHHHHHH
Q psy17832 119 ---------TDLAMDYQVSS------VPVLIRM-KDGREQDRFVGFQKSNLEELEAFV 160 (189)
Q Consensus 119 ---------~~~~~~~~v~~------~Pt~~~~-~~G~~~~~~~G~~~~~~~~l~~~l 160 (189)
..+.+.||+.. .|+.+++ ++|+++..+.|........+.+.|
T Consensus 84 ~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 84 VTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred ceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 35667888753 6888888 799999999876533113444443
No 107
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.44 E-value=1.1e-12 Score=92.22 Aligned_cols=78 Identities=10% Similarity=0.115 Sum_probs=58.7
Q ss_pred HhCCCcEEEEEecCCChhhhhhhHHH---HHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEE-eCCeeEEEEec
Q psy17832 72 KQASTPVIVDFFAKWCDPCKLMAPCL---EAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRM-KDGREQDRFVG 147 (189)
Q Consensus 72 ~~~~k~vvv~f~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~-~~G~~~~~~~G 147 (189)
...+|+++|+|+++||++|+.+...+ .++.+....++..+.++.|....-....+ .++||++|+ .+|+++.++.|
T Consensus 20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi~~i~G 98 (130)
T cd02960 20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVRADITG 98 (130)
T ss_pred HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCcccccc
Confidence 45799999999999999999999876 34555554567777777663321112234 689999999 89999998888
Q ss_pred CCc
Q psy17832 148 FQK 150 (189)
Q Consensus 148 ~~~ 150 (189)
...
T Consensus 99 y~~ 101 (130)
T cd02960 99 RYS 101 (130)
T ss_pred ccc
Confidence 764
No 108
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.43 E-value=1.2e-12 Score=96.73 Aligned_cols=94 Identities=11% Similarity=0.170 Sum_probs=71.3
Q ss_pred CCCCeEEecCHHHHHHHHHhCCCcEEEEEecCC-ChhhhhhhHHHHHHHHHccCceEEEEEEcCc---------------
Q psy17832 54 APSTSFQITDQKEFEAKVKQASTPVIVDFFAKW-CDPCKLMAPCLEAIVERMNGKVQLAKVDVDL--------------- 117 (189)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~k~vvv~f~a~w-C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~--------------- 117 (189)
+|++.+...+++.+... .-.+|++||+||++| |++|..+++.|+++++++. ++.++.|..|.
T Consensus 24 ~P~f~l~~~~g~~v~l~-~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~~ 101 (167)
T PRK00522 24 APDFTLVANDLSDVSLA-DFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLEN 101 (167)
T ss_pred CCCeEEEcCCCcEEehH-HhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCCC
Confidence 45555555555544322 225889999999999 9999999999999999984 78888887642
Q ss_pred --------cHhHHHhCCCcccc---------EEEEE-eCCeeEEEEecCC
Q psy17832 118 --------MTDLAMDYQVSSVP---------VLIRM-KDGREQDRFVGFQ 149 (189)
Q Consensus 118 --------~~~~~~~~~v~~~P---------t~~~~-~~G~~~~~~~G~~ 149 (189)
...+++.||+...| +.+++ ++|+++..+.+..
T Consensus 102 ~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~ 151 (167)
T PRK00522 102 VITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPE 151 (167)
T ss_pred ceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCC
Confidence 22678899998777 88888 8999998886543
No 109
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.43 E-value=1.9e-12 Score=85.71 Aligned_cols=72 Identities=15% Similarity=0.231 Sum_probs=62.4
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeEEEEecCCc
Q psy17832 74 ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQK 150 (189)
Q Consensus 74 ~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~ 150 (189)
.+.+.+..|+++||++|....+.++++.+.++ ++.|..+|.++.++++.+|+|.++|++++ +|+.+. .|..+
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~--~G~~~ 82 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFG--FGRMT 82 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEE--eCCCC
Confidence 45556778999999999999999999998875 79999999999999999999999999975 888775 46443
No 110
>KOG1731|consensus
Probab=99.41 E-value=1.9e-13 Score=114.60 Aligned_cols=113 Identities=21% Similarity=0.411 Sum_probs=86.6
Q ss_pred CCCCeEEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccC---ceEEEEEEcC--ccHhHHHhCCCc
Q psy17832 54 APSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG---KVQLAKVDVD--LMTDLAMDYQVS 128 (189)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d--~~~~~~~~~~v~ 128 (189)
.++..+..++.++|...+..+.+-.+|.||++||++|+.+.|.++++++.... -+.++.|||. .+..+|+.|+|+
T Consensus 36 ~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~ 115 (606)
T KOG1731|consen 36 SPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVS 115 (606)
T ss_pred CCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCC
Confidence 34455556689999999887777889999999999999999999999987764 4888889985 567899999999
Q ss_pred cccEEEEE-eCCee---EEEEecCCcCcHHHHHHHHHHhcCCCC
Q psy17832 129 SVPVLIRM-KDGRE---QDRFVGFQKSNLEELEAFVTNAEKPAE 168 (189)
Q Consensus 129 ~~Pt~~~~-~~G~~---~~~~~G~~~~~~~~l~~~l~~~l~~~~ 168 (189)
++|++.+| .+-+. -..+.|.... .++.+.+.+.+....
T Consensus 116 ~~Ptlryf~~~~~~~~~G~~~~~~~~~--~ei~~~l~~~la~~~ 157 (606)
T KOG1731|consen 116 GYPTLRYFPPDSQNKTDGSDVSGPVIP--SEIRDQLIRTLAEED 157 (606)
T ss_pred CCceeeecCCccccCcCCCcccCCcch--hhHHHHHHHHHHHHH
Confidence 99999999 44111 1233455555 677777777665444
No 111
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.41 E-value=4e-12 Score=94.34 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=79.1
Q ss_pred CCCCeEEecCH----HHHHHHHHhCCCcEEEEEe-cCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCcc---------
Q psy17832 54 APSTSFQITDQ----KEFEAKVKQASTPVIVDFF-AKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDLM--------- 118 (189)
Q Consensus 54 ~~~~~~~~~~~----~~~~~~~~~~~k~vvv~f~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~--------- 118 (189)
+|.+.+...++ +.+... ..++|++||+|| +.||++|....+.|++++++|.+ ++.++.|..|..
T Consensus 5 aP~f~~~~~~g~~~~~~~~l~-~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~ 83 (173)
T cd03015 5 APDFKATAVVPNGEFKEISLS-DYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNT 83 (173)
T ss_pred CCCCEeecccCCCCceEEehH-HhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHh
Confidence 45555554443 223222 225789999999 89999999999999999999975 577777765432
Q ss_pred -------------------HhHHHhCCCc------cccEEEEE-eCCeeEEEEecCCcC--cHHHHHHHHHHhcC
Q psy17832 119 -------------------TDLAMDYQVS------SVPVLIRM-KDGREQDRFVGFQKS--NLEELEAFVTNAEK 165 (189)
Q Consensus 119 -------------------~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~~~--~~~~l~~~l~~~l~ 165 (189)
..+.+.|++. .+|+++++ ++|+++..+.+..+. ..+++.+.|+.+..
T Consensus 84 ~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~~ 158 (173)
T cd03015 84 PRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQF 158 (173)
T ss_pred hhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhh
Confidence 2466778876 57888888 899999988765432 34677777776643
No 112
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.39 E-value=4.2e-12 Score=92.35 Aligned_cols=105 Identities=19% Similarity=0.281 Sum_probs=77.3
Q ss_pred CCCCeEEecCHHHHHHHHHhCCCcEEEEEecC-CChhhhhhhHHHHHHHHHccC-ceEEEEEEcCc--------------
Q psy17832 54 APSTSFQITDQKEFEAKVKQASTPVIVDFFAK-WCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDL-------------- 117 (189)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~k~vvv~f~a~-wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~-------------- 117 (189)
++++.+...+++.+... ..++|++||+||+. ||+.|....+.|.++++++.+ ++.|+.|..|.
T Consensus 10 ~p~f~l~~~~G~~~~l~-~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~ 88 (154)
T PRK09437 10 APKFSLPDQDGEQVSLT-DFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLN 88 (154)
T ss_pred CCCcEeeCCCCCEEeHH-HhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 45666666666554432 23688999999976 688899999999999999875 58888887653
Q ss_pred -------cHhHHHhCCCccc------------cEEEEE-eCCeeEEEEecCCcCcHHHHHHHHH
Q psy17832 118 -------MTDLAMDYQVSSV------------PVLIRM-KDGREQDRFVGFQKSNLEELEAFVT 161 (189)
Q Consensus 118 -------~~~~~~~~~v~~~------------Pt~~~~-~~G~~~~~~~G~~~~~~~~l~~~l~ 161 (189)
...+.+.|++... |+.+++ ++|+++..+.|.... +.+...++
T Consensus 89 ~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~--~~~~~~~~ 150 (154)
T PRK09437 89 FTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTS--NHHDVVLD 150 (154)
T ss_pred CeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcc--hhHHHHHH
Confidence 2357788887654 666777 899999999998776 55544443
No 113
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.38 E-value=1e-12 Score=91.73 Aligned_cols=89 Identities=22% Similarity=0.473 Sum_probs=71.4
Q ss_pred CCCCeEEecCHHHHHHHHHhCCCcEEEEEecC-CChhhhhhhHHHHHHHHHccC-ceEEEEEEcCcc-------------
Q psy17832 54 APSTSFQITDQKEFEAKVKQASTPVIVDFFAK-WCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDLM------------- 118 (189)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~k~vvv~f~a~-wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~------------- 118 (189)
+|++.+...+++.+... ...++++||.||++ ||++|+...+.|++++++|+. ++.++.|..|..
T Consensus 5 ~P~f~l~~~~g~~~~l~-~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~ 83 (124)
T PF00578_consen 5 APDFTLTDSDGKTVSLS-DLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLP 83 (124)
T ss_dssp GGCEEEETTTSEEEEGG-GGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCS
T ss_pred CCCcEeECCCCCEEEHH-HHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccc
Confidence 55666666665554432 22689999999999 999999999999999999886 599999987543
Q ss_pred --------HhHHHhCCCc------cccEEEEE-eCCeeEE
Q psy17832 119 --------TDLAMDYQVS------SVPVLIRM-KDGREQD 143 (189)
Q Consensus 119 --------~~~~~~~~v~------~~Pt~~~~-~~G~~~~ 143 (189)
..+.+.|++. .+|+++++ ++|+++.
T Consensus 84 ~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 84 FPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp SEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred cccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence 3688899998 99999999 8888875
No 114
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.37 E-value=6.2e-12 Score=90.71 Aligned_cols=107 Identities=19% Similarity=0.318 Sum_probs=75.6
Q ss_pred CCCCeEEecCHHHHHHHHHhCC-CcEEEEEe-cCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcC--------------
Q psy17832 54 APSTSFQITDQKEFEAKVKQAS-TPVIVDFF-AKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVD-------------- 116 (189)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~-k~vvv~f~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d-------------- 116 (189)
++.+.+...+++.+... ...+ +++||.|| ++||+.|....|.|+++++++.+ ++.++.|..|
T Consensus 7 ~p~~~l~~~~g~~v~l~-~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~ 85 (149)
T cd03018 7 APDFELPDQNGQEVRLS-EFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGL 85 (149)
T ss_pred CCCcEecCCCCCEEeHH-HHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCC
Confidence 44455555555544332 2235 88888888 99999999999999999999974 5888877653
Q ss_pred -------cc--HhHHHhCCCcc----cc--EEEEE-eCCeeEEEEecCC--cCcHHHHHHHHH
Q psy17832 117 -------LM--TDLAMDYQVSS----VP--VLIRM-KDGREQDRFVGFQ--KSNLEELEAFVT 161 (189)
Q Consensus 117 -------~~--~~~~~~~~v~~----~P--t~~~~-~~G~~~~~~~G~~--~~~~~~l~~~l~ 161 (189)
.. ..+.+.|++.. +| +++++ ++|+++..+.|.. ..+...+.+.|+
T Consensus 86 ~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
T cd03018 86 TFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALD 148 (149)
T ss_pred CceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHhh
Confidence 23 46778888873 33 77777 8999999998876 443456655553
No 115
>smart00594 UAS UAS domain.
Probab=99.36 E-value=1.5e-11 Score=86.24 Aligned_cols=100 Identities=15% Similarity=0.158 Sum_probs=78.1
Q ss_pred EEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHH---HHHHHHccCceEEEEEEcCcc--HhHHHhCCCccccEE
Q psy17832 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCL---EAIVERMNGKVQLAKVDVDLM--TDLAMDYQVSSVPVL 133 (189)
Q Consensus 59 ~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~--~~~~~~~~v~~~Pt~ 133 (189)
+...+.++..+.....+|+++|+|+++||++|+.+...+ .++.+.+..++.++.+|++.. ..++.+|+++++|++
T Consensus 11 f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~ 90 (122)
T smart00594 11 FYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYV 90 (122)
T ss_pred eeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEE
Confidence 444455665555466799999999999999999988765 456666666788888887643 478999999999999
Q ss_pred EEE-eCC-----eeEEEEecCCcCcHHHHHHHH
Q psy17832 134 IRM-KDG-----REQDRFVGFQKSNLEELEAFV 160 (189)
Q Consensus 134 ~~~-~~G-----~~~~~~~G~~~~~~~~l~~~l 160 (189)
+++ .+| .++.++.|..+. ++|...|
T Consensus 91 ~~l~~~~g~~~~~~~~~~~G~~~~--~~l~~~l 121 (122)
T smart00594 91 AIVDPRTGQRVIEWVGVVEGEISP--EELMTFL 121 (122)
T ss_pred EEEecCCCceeEEEeccccCCCCH--HHHHHhh
Confidence 999 665 457788899888 8887765
No 116
>KOG0191|consensus
Probab=99.35 E-value=5.9e-12 Score=104.51 Aligned_cols=107 Identities=27% Similarity=0.532 Sum_probs=93.1
Q ss_pred EEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHcc--CceEEEEEEcCccHhHHHhCCCccccEEEEE
Q psy17832 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMN--GKVQLAKVDVDLMTDLAMDYQVSSVPVLIRM 136 (189)
Q Consensus 59 ~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 136 (189)
+..++..+|...+...+..++|.||+|||++|+.+.|.+.++++.+. +.+.+..+|++....++.+++|+++||+.+|
T Consensus 146 v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f 225 (383)
T KOG0191|consen 146 VFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLF 225 (383)
T ss_pred eEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEe
Confidence 44445677887777788889999999999999999999999999886 5799999999999999999999999999999
Q ss_pred eCCee-EEEEecCCcCcHHHHHHHHHHhcCCC
Q psy17832 137 KDGRE-QDRFVGFQKSNLEELEAFVTNAEKPA 167 (189)
Q Consensus 137 ~~G~~-~~~~~G~~~~~~~~l~~~l~~~l~~~ 167 (189)
+.|.. ...+.|.++. +.+..|+.......
T Consensus 226 ~~~~~~~~~~~~~R~~--~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 226 PPGEEDIYYYSGLRDS--DSIVSFVEKKERRN 255 (383)
T ss_pred cCCCcccccccccccH--HHHHHHHHhhcCCC
Confidence 77766 6677788888 99999999988774
No 117
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.34 E-value=2.1e-11 Score=91.62 Aligned_cols=90 Identities=16% Similarity=0.101 Sum_probs=68.5
Q ss_pred CCCcEEEEEe-cCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCc-------------------------cHhHHHhCC
Q psy17832 74 ASTPVIVDFF-AKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDL-------------------------MTDLAMDYQ 126 (189)
Q Consensus 74 ~~k~vvv~f~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~-------------------------~~~~~~~~~ 126 (189)
.||++||+|| ++||++|..+++.|+++++++.+ ++.++.|..|. ...+++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 5889999999 99999999999999999998864 57777776553 235778899
Q ss_pred Cc------cccEEEEE-eCCeeEEEEecCC--cCcHHHHHHHHHHh
Q psy17832 127 VS------SVPVLIRM-KDGREQDRFVGFQ--KSNLEELEAFVTNA 163 (189)
Q Consensus 127 v~------~~Pt~~~~-~~G~~~~~~~G~~--~~~~~~l~~~l~~~ 163 (189)
|. ..|+.+++ ++|+++..+.+.. ....+++.+.|+.+
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAA 155 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 86 46888888 8999998775433 22446676666543
No 118
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.29 E-value=2.5e-11 Score=87.34 Aligned_cols=93 Identities=16% Similarity=0.220 Sum_probs=64.9
Q ss_pred CCCeEEecCHHHHHHHHHhCCCcEEEE-EecCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCc---------------
Q psy17832 55 PSTSFQITDQKEFEAKVKQASTPVIVD-FFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDL--------------- 117 (189)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~k~vvv~-f~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~--------------- 117 (189)
+++.+...+++.+...-...+++++|. ||++||++|+..++.|.++++++.+ ++.++.|..+.
T Consensus 3 p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~ 82 (149)
T cd02970 3 PDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPF 82 (149)
T ss_pred CCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCC
Confidence 444444445544432212234455554 5699999999999999999999864 58888887643
Q ss_pred ------cHhHHHhCCCc-----------------------------cccEEEEE-eCCeeEEEEec
Q psy17832 118 ------MTDLAMDYQVS-----------------------------SVPVLIRM-KDGREQDRFVG 147 (189)
Q Consensus 118 ------~~~~~~~~~v~-----------------------------~~Pt~~~~-~~G~~~~~~~G 147 (189)
+..+.+.||+. .+|..+++ ++|+++..+.|
T Consensus 83 p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 83 PVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred eEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 33577888874 68988888 78888877765
No 119
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.28 E-value=2.1e-11 Score=103.33 Aligned_cols=99 Identities=23% Similarity=0.441 Sum_probs=80.4
Q ss_pred CHHHHHHHHHh-CCCcEEEEEecCCChhhhhhhHHHH---HHHHHccCceEEEEEEcCccH----hHHHhCCCccccEEE
Q psy17832 63 DQKEFEAKVKQ-ASTPVIVDFFAKWCDPCKLMAPCLE---AIVERMNGKVQLAKVDVDLMT----DLAMDYQVSSVPVLI 134 (189)
Q Consensus 63 ~~~~~~~~~~~-~~k~vvv~f~a~wC~~C~~~~p~l~---~l~~~~~~~v~~~~vd~d~~~----~~~~~~~v~~~Pt~~ 134 (189)
+..++++.+.+ ++|+|+|+|||+||-.|+.+.+..- +...+. .++++++.|..++. ++.++||+-+.|+++
T Consensus 461 ~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~-~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ 539 (569)
T COG4232 461 PLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL-QDVVLLQADVTANDPAITALLKRLGVFGVPTYL 539 (569)
T ss_pred CHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc-CCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEE
Confidence 34488877554 3569999999999999999988863 233343 37999999987653 688999999999999
Q ss_pred EE-eCCeeEEEEecCCcCcHHHHHHHHHHhc
Q psy17832 135 RM-KDGREQDRFVGFQKSNLEELEAFVTNAE 164 (189)
Q Consensus 135 ~~-~~G~~~~~~~G~~~~~~~~l~~~l~~~l 164 (189)
|| .+|++.....|..+. +.+.++|++..
T Consensus 540 ff~~~g~e~~~l~gf~~a--~~~~~~l~~~~ 568 (569)
T COG4232 540 FFGPQGSEPEILTGFLTA--DAFLEHLERAA 568 (569)
T ss_pred EECCCCCcCcCCcceecH--HHHHHHHHHhc
Confidence 99 699888778999999 99999998754
No 120
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.27 E-value=4.2e-11 Score=89.47 Aligned_cols=61 Identities=15% Similarity=0.075 Sum_probs=48.4
Q ss_pred CCCCeEEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcC
Q psy17832 54 APSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVD 116 (189)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 116 (189)
..++.+..++++.+... .-+||++||.|||+||++|. .++.|++++++|++ ++.++.+.++
T Consensus 5 ~~~f~~~~~~G~~v~Ls-~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 5 ILTTVVTTIDGEVTTLE-KYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred ccCcEeECCCCCEEeHH-HhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeecc
Confidence 45666666676655433 33689999999999999996 59999999999986 5999999874
No 121
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.26 E-value=2.7e-11 Score=82.22 Aligned_cols=85 Identities=44% Similarity=0.805 Sum_probs=70.3
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcC-ccHhHHHhCC--CccccEEEEEeCCeeEEEEec--CC
Q psy17832 75 STPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVD-LMTDLAMDYQ--VSSVPVLIRMKDGREQDRFVG--FQ 149 (189)
Q Consensus 75 ~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-~~~~~~~~~~--v~~~Pt~~~~~~G~~~~~~~G--~~ 149 (189)
++++++.||++||++|+.++|.+.++.+++...+.++.+|.. ....+...|+ +..+|+++++.+|..+....+ ..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 111 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL 111 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence 788999999999999999999999999999878999999997 7889999999 999999998877776655555 34
Q ss_pred cCcHHHHHHHHH
Q psy17832 150 KSNLEELEAFVT 161 (189)
Q Consensus 150 ~~~~~~l~~~l~ 161 (189)
+. ..+.....
T Consensus 112 ~~--~~~~~~~~ 121 (127)
T COG0526 112 PK--EALIDALG 121 (127)
T ss_pred CH--HHHHHHhc
Confidence 44 44444433
No 122
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.24 E-value=3.4e-11 Score=86.10 Aligned_cols=93 Identities=20% Similarity=0.313 Sum_probs=67.3
Q ss_pred CCCCeEEecCHHHHHHHHHhCCCcEEEEEecCCChh-hhhhhHHHHHHHHHccC----ceEEEEEEcCcc----------
Q psy17832 54 APSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDP-CKLMAPCLEAIVERMNG----KVQLAKVDVDLM---------- 118 (189)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~-C~~~~p~l~~l~~~~~~----~v~~~~vd~d~~---------- 118 (189)
++++.+...+++.+... ..+++++||.||++||++ |....+.|+++++++.+ ++.++.|..|..
T Consensus 2 ~p~f~l~~~~g~~~~l~-~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~ 80 (142)
T cd02968 2 GPDFTLTDQDGRPVTLS-DLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAY 80 (142)
T ss_pred CCceEEEcCCCCEEchH-HhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHH
Confidence 35666666666655433 236899999999999998 99999999999999875 388888876432
Q ss_pred ------------------HhHHHhCCCccc--------------cEEEEE-eCCeeEEEEec
Q psy17832 119 ------------------TDLAMDYQVSSV--------------PVLIRM-KDGREQDRFVG 147 (189)
Q Consensus 119 ------------------~~~~~~~~v~~~--------------Pt~~~~-~~G~~~~~~~G 147 (189)
..+.+.||+... |+++++ ++|+++..+.|
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~~ 142 (142)
T cd02968 81 AKAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYGG 142 (142)
T ss_pred HHHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeecC
Confidence 135566675543 356677 89988877654
No 123
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.24 E-value=2e-10 Score=87.31 Aligned_cols=101 Identities=15% Similarity=0.144 Sum_probs=73.1
Q ss_pred CCCcEEE-EEecCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCc---------------------------cHhHHHh
Q psy17832 74 ASTPVIV-DFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDL---------------------------MTDLAMD 124 (189)
Q Consensus 74 ~~k~vvv-~f~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~---------------------------~~~~~~~ 124 (189)
.++.+|| +||++||+.|..+++.|.++++++.. ++.++.|.+|. ...+++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 5776665 68999999999999999999998875 47777776652 2357788
Q ss_pred CCCc------cccEEEEE-eCCeeEEEEecCCc--CcHHHHHHHHHHhcCCCCCCCCCC
Q psy17832 125 YQVS------SVPVLIRM-KDGREQDRFVGFQK--SNLEELEAFVTNAEKPAETSEGVP 174 (189)
Q Consensus 125 ~~v~------~~Pt~~~~-~~G~~~~~~~G~~~--~~~~~l~~~l~~~l~~~~~~~~~~ 174 (189)
||+. .+|+++++ ++|++.....+... .+.+++.+.|+.+..........|
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~~~~~~~~~p 164 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQVNWKRKVATP 164 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhhHHhcCCCcC
Confidence 8884 58999999 89988865532221 245888888888765443333333
No 124
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.23 E-value=6.9e-11 Score=84.24 Aligned_cols=95 Identities=18% Similarity=0.194 Sum_probs=70.0
Q ss_pred CCCeEEecCHHHHHHHHHhCCCcEEEEEe-cCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCc---------------
Q psy17832 55 PSTSFQITDQKEFEAKVKQASTPVIVDFF-AKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDL--------------- 117 (189)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~k~vvv~f~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~--------------- 117 (189)
+.+.+...+++.+... ...++++||+|| +.||+.|....+.|.++++++.. ++.|+.|..+.
T Consensus 3 p~f~l~~~~g~~~~l~-~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~ 81 (140)
T cd02971 3 PDFTLPATDGGEVSLS-DFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLN 81 (140)
T ss_pred CCceeccCCCcEEehH-HhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCC
Confidence 3444444444444322 226899999999 78999999999999999999853 57888777643
Q ss_pred -------cHhHHHhCCCcccc---------EEEEE-eCCeeEEEEecCCc
Q psy17832 118 -------MTDLAMDYQVSSVP---------VLIRM-KDGREQDRFVGFQK 150 (189)
Q Consensus 118 -------~~~~~~~~~v~~~P---------t~~~~-~~G~~~~~~~G~~~ 150 (189)
...+.+.||+...| +++++ ++|+++.++.|...
T Consensus 82 ~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 82 FPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred ceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 23577888887665 67777 78999999988765
No 125
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.23 E-value=2.5e-11 Score=79.07 Aligned_cols=65 Identities=34% Similarity=0.547 Sum_probs=51.7
Q ss_pred HhCCCcEEEEEecCCChhhhhhhHHH---HHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEe
Q psy17832 72 KQASTPVIVDFFAKWCDPCKLMAPCL---EAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMK 137 (189)
Q Consensus 72 ~~~~k~vvv~f~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~ 137 (189)
...+|+++|+|+++||++|+.+...+ .++.+.+..++.++.||.+........ ...++|+++|+.
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~-~~~~~P~~~~ld 81 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQF-DRQGYPTFFFLD 81 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHH-HHCSSSEEEEEE
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHh-CCccCCEEEEeC
Confidence 56799999999999999999999888 456655667899999999877654322 226699999973
No 126
>KOG2501|consensus
Probab=99.22 E-value=4.8e-11 Score=85.62 Aligned_cols=72 Identities=26% Similarity=0.519 Sum_probs=61.2
Q ss_pred HhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCc---eEEEEEEcCccH-------------------------hHHH
Q psy17832 72 KQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGK---VQLAKVDVDLMT-------------------------DLAM 123 (189)
Q Consensus 72 ~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~~-------------------------~~~~ 123 (189)
...||+|.++|-|.||++||.+-|.|.+++++..++ +.++-|+.|.+. ++..
T Consensus 30 ~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ 109 (157)
T KOG2501|consen 30 ALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSE 109 (157)
T ss_pred hhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHH
Confidence 346899999999999999999999999999988875 777777765433 5888
Q ss_pred hCCCccccEEEEE-eCCeeEE
Q psy17832 124 DYQVSSVPVLIRM-KDGREQD 143 (189)
Q Consensus 124 ~~~v~~~Pt~~~~-~~G~~~~ 143 (189)
+|+|.++|+++++ .+|..+.
T Consensus 110 ky~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 110 KYEVKGIPALVILKPDGTVVT 130 (157)
T ss_pred hcccCcCceeEEecCCCCEeh
Confidence 9999999999999 8998774
No 127
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.20 E-value=3.7e-10 Score=84.73 Aligned_cols=92 Identities=14% Similarity=0.123 Sum_probs=70.8
Q ss_pred CCCcEEEEEe-cCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCc-------------------------cHhHHHhCC
Q psy17832 74 ASTPVIVDFF-AKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDL-------------------------MTDLAMDYQ 126 (189)
Q Consensus 74 ~~k~vvv~f~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~-------------------------~~~~~~~~~ 126 (189)
.+|++||+|| +.||+.|..+++.|.++++++.+ ++.++.|..|. +..+++.||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 5789999999 99999999999999999999964 57777777543 346788899
Q ss_pred C----ccc--cEEEEE-eCCeeEEEEecCC--cCcHHHHHHHHHHhcC
Q psy17832 127 V----SSV--PVLIRM-KDGREQDRFVGFQ--KSNLEELEAFVTNAEK 165 (189)
Q Consensus 127 v----~~~--Pt~~~~-~~G~~~~~~~G~~--~~~~~~l~~~l~~~l~ 165 (189)
+ .++ |+.+++ ++|+++..+.... ..+.+++.+.|+.+--
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq~ 157 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQY 157 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhhh
Confidence 8 356 988888 8999987765432 1245777777765543
No 128
>PRK15000 peroxidase; Provisional
Probab=99.18 E-value=5.6e-10 Score=84.69 Aligned_cols=92 Identities=13% Similarity=0.207 Sum_probs=73.3
Q ss_pred CCCcEEEEEec-CCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCc----------------------------cHhHHH
Q psy17832 74 ASTPVIVDFFA-KWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDL----------------------------MTDLAM 123 (189)
Q Consensus 74 ~~k~vvv~f~a-~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~----------------------------~~~~~~ 123 (189)
++|++||+||. .||+.|..+++.|.++++++.. ++.++.|.+|. ..++++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 58899999998 5999999999999999999975 57788887652 224677
Q ss_pred hCCCc------cccEEEEE-eCCeeEEEEecCCcC--cHHHHHHHHHHhcC
Q psy17832 124 DYQVS------SVPVLIRM-KDGREQDRFVGFQKS--NLEELEAFVTNAEK 165 (189)
Q Consensus 124 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~~~--~~~~l~~~l~~~l~ 165 (189)
.||+. .+|+.+++ ++|+++..+.|..+. +.+++.+.|+.+.-
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al~~ 163 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQF 163 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhh
Confidence 78887 68999999 799999888775533 56788888876543
No 129
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.16 E-value=5.5e-10 Score=85.61 Aligned_cols=111 Identities=13% Similarity=0.096 Sum_probs=77.8
Q ss_pred CCCCeEEecCHHHHHHHHHhCCCcE-EEEEecCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCcc-------------
Q psy17832 54 APSTSFQITDQKEFEAKVKQASTPV-IVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDLM------------- 118 (189)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~k~v-vv~f~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~------------- 118 (189)
+|+|.+...+++..... ...++++ |+.||++||+.|..+++.|.+++++|.. ++.++.|.+|..
T Consensus 8 aPdF~l~t~~G~~~~~~-~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~ 86 (215)
T PRK13599 8 FPSMEVVTTQGVKRLPE-DYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDN 86 (215)
T ss_pred CCCCEeECCCCcEecHH-HHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHh
Confidence 45555555454432211 1246665 5788999999999999999999999975 588888877642
Q ss_pred --------------HhHHHhCCCc-------cccEEEEE-eCCeeEEEEecCC--cCcHHHHHHHHHHhcC
Q psy17832 119 --------------TDLAMDYQVS-------SVPVLIRM-KDGREQDRFVGFQ--KSNLEELEAFVTNAEK 165 (189)
Q Consensus 119 --------------~~~~~~~~v~-------~~Pt~~~~-~~G~~~~~~~G~~--~~~~~~l~~~l~~~l~ 165 (189)
..+++.||+. .+|+++++ ++|++...+.... ..+.+++.+.|+.+..
T Consensus 87 ~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq~ 157 (215)
T PRK13599 87 TNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQT 157 (215)
T ss_pred cCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhhh
Confidence 2477788873 57999999 7999987664332 2356888888876543
No 130
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=3.9e-10 Score=80.25 Aligned_cols=90 Identities=17% Similarity=0.319 Sum_probs=76.0
Q ss_pred HhCCCcEEEEEecCCChhhhhhhHHH---HHHHHHccCceEEEEEEcCc----------------cHhHHHhCCCccccE
Q psy17832 72 KQASTPVIVDFFAKWCDPCKLMAPCL---EAIVERMNGKVQLAKVDVDL----------------MTDLAMDYQVSSVPV 132 (189)
Q Consensus 72 ~~~~k~vvv~f~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~----------------~~~~~~~~~v~~~Pt 132 (189)
...+|..+++|-++.|++|.++...+ .++.+-+.+++.++.+++.. ..++++.|+|+++|+
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPt 118 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPT 118 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCce
Confidence 44689999999999999999999887 55777777789999998742 238999999999999
Q ss_pred EEEE-eCCeeEEEEecCCcCcHHHHHHHHHHh
Q psy17832 133 LIRM-KDGREQDRFVGFQKSNLEELEAFVTNA 163 (189)
Q Consensus 133 ~~~~-~~G~~~~~~~G~~~~~~~~l~~~l~~~ 163 (189)
++|| ++|+.+..+.|+.+. +++...++=.
T Consensus 119 fvFfdk~Gk~Il~lPGY~pp--e~Fl~vlkYV 148 (182)
T COG2143 119 FVFFDKTGKTILELPGYMPP--EQFLAVLKYV 148 (182)
T ss_pred EEEEcCCCCEEEecCCCCCH--HHHHHHHHHH
Confidence 9999 899999999999998 7777766543
No 131
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.12 E-value=1.1e-09 Score=84.01 Aligned_cols=110 Identities=13% Similarity=0.106 Sum_probs=76.2
Q ss_pred CCCCeEEecCHHHHHHHHHhCCCcEEE-EEecCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCc--------------
Q psy17832 54 APSTSFQITDQKEFEAKVKQASTPVIV-DFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDL-------------- 117 (189)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~k~vvv-~f~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~-------------- 117 (189)
+|+|.+...+++..... ..++|++|| .||++||+.|..+++.|.++++++.. ++.++.|++|.
T Consensus 13 aPdF~l~~~~G~~~l~~-~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~ 91 (215)
T PRK13191 13 FPEMEVITTHGKIKLPD-DYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKN 91 (215)
T ss_pred CCCCEeecCCCCEEcHH-HhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHh
Confidence 45555554444321111 125676665 78899999999999999999999964 57788877653
Q ss_pred -------------cHhHHHhCCCc-------cccEEEEE-eCCeeEEEEecCCcC--cHHHHHHHHHHhc
Q psy17832 118 -------------MTDLAMDYQVS-------SVPVLIRM-KDGREQDRFVGFQKS--NLEELEAFVTNAE 164 (189)
Q Consensus 118 -------------~~~~~~~~~v~-------~~Pt~~~~-~~G~~~~~~~G~~~~--~~~~l~~~l~~~l 164 (189)
+.++++.||+. .+|+.+++ ++|++...+.+.... +.+++.+.|+.+.
T Consensus 92 ~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 161 (215)
T PRK13191 92 LKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQ 161 (215)
T ss_pred cCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 23567778863 36888888 899998876655322 5688888887764
No 132
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.10 E-value=7.7e-10 Score=87.10 Aligned_cols=106 Identities=25% Similarity=0.472 Sum_probs=80.8
Q ss_pred CCeEEecCHHHHHHHHHhC--CCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEE
Q psy17832 56 STSFQITDQKEFEAKVKQA--STPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVL 133 (189)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~--~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~ 133 (189)
..+.++.+++.|...+... +..|||.||-+.++.|..+...|..|+++|+ .+.|++|.....+ +...|.+..+||+
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-~vKFvkI~a~~~~-~~~~f~~~~LPtl 202 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP-EVKFVKIRASKCP-ASENFPDKNLPTL 202 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-TSEEEEEEECGCC-TTTTS-TTC-SEE
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEEehhccC-cccCCcccCCCEE
Confidence 4566676788888775443 5579999999999999999999999999997 8999999988765 6789999999999
Q ss_pred EEEeCCeeEEEEecCCcC-----cHHHHHHHHHHh
Q psy17832 134 IRMKDGREQDRFVGFQKS-----NLEELEAFVTNA 163 (189)
Q Consensus 134 ~~~~~G~~~~~~~G~~~~-----~~~~l~~~l~~~ 163 (189)
++|++|.++..++|.... +.+.|+.+|.++
T Consensus 203 lvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 203 LVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 999999999999887533 345666666654
No 133
>PRK13189 peroxiredoxin; Provisional
Probab=99.09 E-value=2.3e-09 Score=82.64 Aligned_cols=96 Identities=13% Similarity=0.173 Sum_probs=69.8
Q ss_pred CCCcEE-EEEecCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCc---------------------------cHhHHHh
Q psy17832 74 ASTPVI-VDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDL---------------------------MTDLAMD 124 (189)
Q Consensus 74 ~~k~vv-v~f~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~---------------------------~~~~~~~ 124 (189)
.++.++ ++||++||+.|..+++.|.++++++.. ++.++.|.+|. ...+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 567554 577899999999999999999999875 47777777653 2257788
Q ss_pred CCCc-------cccEEEEE-eCCeeEEEEecCCc--CcHHHHHHHHHHhcCCCCC
Q psy17832 125 YQVS-------SVPVLIRM-KDGREQDRFVGFQK--SNLEELEAFVTNAEKPAET 169 (189)
Q Consensus 125 ~~v~-------~~Pt~~~~-~~G~~~~~~~G~~~--~~~~~l~~~l~~~l~~~~~ 169 (189)
||+. .+|+.+++ ++|++...+.+... .+.+++...|+.+......
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq~~~~~ 168 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQTSDEK 168 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhhHhhc
Confidence 8875 46888888 79999876654432 1347888888776543333
No 134
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.08 E-value=3.8e-09 Score=80.40 Aligned_cols=90 Identities=13% Similarity=0.123 Sum_probs=67.0
Q ss_pred CcE-EEEEecCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCc---------------------------cHhHHHhCC
Q psy17832 76 TPV-IVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDL---------------------------MTDLAMDYQ 126 (189)
Q Consensus 76 k~v-vv~f~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~---------------------------~~~~~~~~~ 126 (189)
+++ |+.||++||+.|..+++.|.++++++.+ ++.++.|.+|. ...+++.||
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg 105 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLG 105 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcC
Confidence 544 5588999999999999999999999975 58888887653 235778888
Q ss_pred Cc----c----ccEEEEE-eCCeeEEEEecCCcC--cHHHHHHHHHHhcC
Q psy17832 127 VS----S----VPVLIRM-KDGREQDRFVGFQKS--NLEELEAFVTNAEK 165 (189)
Q Consensus 127 v~----~----~Pt~~~~-~~G~~~~~~~G~~~~--~~~~l~~~l~~~l~ 165 (189)
+. + +|+.+++ ++|++...+.+.... +.+++.+.|+.+..
T Consensus 106 ~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq~ 155 (203)
T cd03016 106 MIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQL 155 (203)
T ss_pred CccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence 75 2 3456777 899998877664422 45788888877643
No 135
>KOG0914|consensus
Probab=99.06 E-value=3.9e-10 Score=84.44 Aligned_cols=95 Identities=23% Similarity=0.467 Sum_probs=78.7
Q ss_pred CCCCCeEEecCHHHHHHHHH-hCCCcEEEEEecCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCccHhHHHhCCCc--
Q psy17832 53 EAPSTSFQITDQKEFEAKVK-QASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDLMTDLAMDYQVS-- 128 (189)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~-~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~v~-- 128 (189)
..+..+-...+.+.+++.+. ++.+.++|.||+.|.+.|+...|.+.+|..+|.. .+.|.+||+...++.+.+|+|.
T Consensus 121 ~gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s 200 (265)
T KOG0914|consen 121 SGPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLS 200 (265)
T ss_pred CCchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccC
Confidence 34455555556666666543 3577889999999999999999999999999986 5999999999999999999875
Q ss_pred ----cccEEEEEeCCeeEEEEec
Q psy17832 129 ----SVPVLIRMKDGREQDRFVG 147 (189)
Q Consensus 129 ----~~Pt~~~~~~G~~~~~~~G 147 (189)
.+||+++|++|+.+.|..-
T Consensus 201 ~~srQLPT~ilFq~gkE~~RrP~ 223 (265)
T KOG0914|consen 201 PGSRQLPTYILFQKGKEVSRRPD 223 (265)
T ss_pred cccccCCeEEEEccchhhhcCcc
Confidence 6899999999999876643
No 136
>KOG3414|consensus
Probab=99.05 E-value=7.2e-09 Score=71.06 Aligned_cols=113 Identities=18% Similarity=0.295 Sum_probs=91.9
Q ss_pred EecCHHHHHHHHHh-CCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeC
Q psy17832 60 QITDQKEFEAKVKQ-ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKD 138 (189)
Q Consensus 60 ~~~~~~~~~~~~~~-~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~ 138 (189)
++.++.++++.+.. ..++|||.|--.|-+.|.++-..|.++++...+-+.++-+|+|+-+++.+.|++...|+++||-+
T Consensus 7 ~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn 86 (142)
T KOG3414|consen 7 TLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFN 86 (142)
T ss_pred ccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEc
Confidence 35678899988776 58999999999999999999999999999998778899999999999999999999999999955
Q ss_pred CeeE--EEEecCCcC------cHHHHHHHHHHhcCCCCCCCC
Q psy17832 139 GREQ--DRFVGFQKS------NLEELEAFVTNAEKPAETSEG 172 (189)
Q Consensus 139 G~~~--~~~~G~~~~------~~~~l~~~l~~~l~~~~~~~~ 172 (189)
++-+ ....|.+.. +.+++.+.|+-+...+.+..|
T Consensus 87 ~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~iyRga~KGKg 128 (142)
T KOG3414|consen 87 NKHMKIDLGTGDNNKINFAFEDKQEFIDIIETIYRGARKGKG 128 (142)
T ss_pred CceEEEeeCCCCCceEEEEeccHHHHHHHHHHHHHhhhcCCe
Confidence 5443 333333321 458888888888877666544
No 137
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=99.04 E-value=2.3e-09 Score=77.95 Aligned_cols=89 Identities=21% Similarity=0.333 Sum_probs=61.1
Q ss_pred EEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHH---HHHHHHccCceEEEEEEcCccHhHHHhC--------CC
Q psy17832 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCL---EAIVERMNGKVQLAKVDVDLMTDLAMDY--------QV 127 (189)
Q Consensus 59 ~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~~~~~--------~v 127 (189)
....+.+.|+.+ ...+|+++|.++.+||..|+.|.... .++++.+..++.-++||.++.+++...| |.
T Consensus 22 W~~w~~ea~~~A-k~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~ 100 (163)
T PF03190_consen 22 WQPWGEEALEKA-KKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGS 100 (163)
T ss_dssp -B-SSHHHHHHH-HHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS-
T ss_pred cccCCHHHHHHH-HhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCC
Confidence 344455667766 77899999999999999999988643 4466666667999999999999998888 78
Q ss_pred ccccEEEEE-eCCeeEEEEecC
Q psy17832 128 SSVPVLIRM-KDGREQDRFVGF 148 (189)
Q Consensus 128 ~~~Pt~~~~-~~G~~~~~~~G~ 148 (189)
.++|+.+|+ .+|+++......
T Consensus 101 gGwPl~vfltPdg~p~~~~tY~ 122 (163)
T PF03190_consen 101 GGWPLTVFLTPDGKPFFGGTYF 122 (163)
T ss_dssp --SSEEEEE-TTS-EEEEESS-
T ss_pred CCCCceEEECCCCCeeeeeeec
Confidence 899999999 899998654433
No 138
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.04 E-value=1.2e-09 Score=68.95 Aligned_cols=68 Identities=24% Similarity=0.513 Sum_probs=51.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHh----HHHhCCCccccEEEEEeCCeeEEEEecCCcCcHH
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTD----LAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLE 154 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~ 154 (189)
+..||++||++|+...+.|++ .++.+..+|++.++. +.+.+++.++|++++. |+. +.|. +. +
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~-~~--~ 67 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGF-DP--E 67 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeC-CH--H
Confidence 467999999999999888865 257788889887654 5677999999999874 654 5564 33 6
Q ss_pred HHHHHH
Q psy17832 155 ELEAFV 160 (189)
Q Consensus 155 ~l~~~l 160 (189)
.|.++|
T Consensus 68 ~i~~~i 73 (74)
T TIGR02196 68 KLDQLL 73 (74)
T ss_pred HHHHHh
Confidence 777766
No 139
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.00 E-value=2e-08 Score=78.91 Aligned_cols=92 Identities=12% Similarity=0.114 Sum_probs=69.5
Q ss_pred CCCcEEEEEe-cCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCc----------------------------cHhHHH
Q psy17832 74 ASTPVIVDFF-AKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDL----------------------------MTDLAM 123 (189)
Q Consensus 74 ~~k~vvv~f~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~----------------------------~~~~~~ 123 (189)
+++++||.|| +.||+.|..+++.|.++++++.+ ++.++.|.+|. +..+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 5677888887 99999999999999999999975 47777777654 225788
Q ss_pred hCCCc-----cccEEEEE-eCCeeEEEEecCC--cCcHHHHHHHHHHhcC
Q psy17832 124 DYQVS-----SVPVLIRM-KDGREQDRFVGFQ--KSNLEELEAFVTNAEK 165 (189)
Q Consensus 124 ~~~v~-----~~Pt~~~~-~~G~~~~~~~G~~--~~~~~~l~~~l~~~l~ 165 (189)
.||+. ..|+.+++ ++|+++..+.... ..+.+++.+.|+.+--
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq~ 226 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQF 226 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhch
Confidence 89985 58999999 7999987664322 2245777777776543
No 140
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.00 E-value=1.6e-09 Score=69.17 Aligned_cols=58 Identities=21% Similarity=0.362 Sum_probs=43.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHh-----CCCccccEEEEEeCCeeEE
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMD-----YQVSSVPVLIRMKDGREQD 143 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~-----~~v~~~Pt~~~~~~G~~~~ 143 (189)
++.||++||++|+.+++.|.++ .+.|-.+|+++....... +++.++|++ ++.+|+.+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~ 64 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT 64 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec
Confidence 5679999999999999988765 234456788777665555 489999997 567876653
No 141
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=99.00 E-value=2.4e-09 Score=75.64 Aligned_cols=73 Identities=26% Similarity=0.432 Sum_probs=51.2
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhC---CCccccEEEEE-eCCeeEEEEec
Q psy17832 74 ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDY---QVSSVPVLIRM-KDGREQDRFVG 147 (189)
Q Consensus 74 ~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~---~v~~~Pt~~~~-~~G~~~~~~~G 147 (189)
..+..++.|..+|||.|+...|.|.++++..+ ++.+-.+.-|++.++..+| |.+++|+++|+ ++|+++.++..
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wge 116 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRWGE 116 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEES
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEEcC
Confidence 45667889999999999999999999999865 6666667777777766655 68899999999 77899988744
No 142
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.99 E-value=1e-08 Score=77.75 Aligned_cols=91 Identities=18% Similarity=0.199 Sum_probs=68.4
Q ss_pred CCCcEEEEEe-cCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCc----------------------------cHhHHH
Q psy17832 74 ASTPVIVDFF-AKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDL----------------------------MTDLAM 123 (189)
Q Consensus 74 ~~k~vvv~f~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~----------------------------~~~~~~ 123 (189)
.++++||+|| +.||+.|..+.+.|.++++++.. ++.++.|++|. ..++++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 5789999999 58899999999999999999975 57777777642 235778
Q ss_pred hCCCc------cccEEEEE-eCCeeEEEEecCCcC--cHHHHHHHHHHhc
Q psy17832 124 DYQVS------SVPVLIRM-KDGREQDRFVGFQKS--NLEELEAFVTNAE 164 (189)
Q Consensus 124 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~~~--~~~~l~~~l~~~l 164 (189)
.||+. .+|+.+++ ++|+++..+.+.... +.+++.+.|+.+-
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~ 164 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQ 164 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhh
Confidence 88985 46888888 799998877664432 3455666665443
No 143
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.99 E-value=2.6e-09 Score=64.50 Aligned_cols=60 Identities=35% Similarity=0.669 Sum_probs=51.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHH---hCCCccccEEEEEeCC
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAM---DYQVSSVPVLIRMKDG 139 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~---~~~v~~~Pt~~~~~~G 139 (189)
++.||++||++|+.+.+.+.++ +....++.++.++++....... .+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 4555689999999998877655 8899999999999766
No 144
>KOG1672|consensus
Probab=98.94 E-value=1.4e-09 Score=80.06 Aligned_cols=93 Identities=24% Similarity=0.420 Sum_probs=81.6
Q ss_pred CeEEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEE
Q psy17832 57 TSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRM 136 (189)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 136 (189)
-..++.+..+|-+.+..+.+ ||+.||-+.-..|+.+-.+|+.|++.+- ...|++||....+-++.+++|..+|++++|
T Consensus 67 ~y~ev~~Ekdf~~~~~kS~k-VVcHFY~~~f~RCKimDkhLe~LAk~h~-eTrFikvnae~~PFlv~kL~IkVLP~v~l~ 144 (211)
T KOG1672|consen 67 EYEEVASEKDFFEEVKKSEK-VVCHFYRPEFFRCKIMDKHLEILAKRHV-ETRFIKVNAEKAPFLVTKLNIKVLPTVALF 144 (211)
T ss_pred eEEEeccHHHHHHHhhcCce-EEEEEEcCCCcceehHHHHHHHHHHhcc-cceEEEEecccCceeeeeeeeeEeeeEEEE
Confidence 34456678888877555554 8999999999999999999999998875 899999999999999999999999999999
Q ss_pred eCCeeEEEEecCCcC
Q psy17832 137 KDGREQDRFVGFQKS 151 (189)
Q Consensus 137 ~~G~~~~~~~G~~~~ 151 (189)
++|+.+.+++|+...
T Consensus 145 k~g~~~D~iVGF~dL 159 (211)
T KOG1672|consen 145 KNGKTVDYVVGFTDL 159 (211)
T ss_pred EcCEEEEEEeeHhhc
Confidence 999999999998643
No 145
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.93 E-value=1.6e-08 Score=64.85 Aligned_cols=73 Identities=26% Similarity=0.565 Sum_probs=56.4
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeEEEEec-CCcCcHHHHHH
Q psy17832 80 VDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEELEA 158 (189)
Q Consensus 80 v~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G-~~~~~~~~l~~ 158 (189)
|.+++++|++|..+...++++.+.++ +.+-.+|..+.+++ .+|||.++|++++ ||+++ +.| ..+. ++|..
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~~--~~G~~p~~--~el~~ 73 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKVV--FVGRVPSK--EELKE 73 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEEE--EESS--HH--HHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEEE--EEecCCCH--HHHHH
Confidence 34478889999999999999999884 66666777777777 9999999999977 88865 678 5566 78887
Q ss_pred HHH
Q psy17832 159 FVT 161 (189)
Q Consensus 159 ~l~ 161 (189)
+|+
T Consensus 74 ~l~ 76 (76)
T PF13192_consen 74 LLE 76 (76)
T ss_dssp HHH
T ss_pred HhC
Confidence 774
No 146
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.91 E-value=2.6e-08 Score=76.36 Aligned_cols=82 Identities=22% Similarity=0.287 Sum_probs=65.4
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcC-----------ccHhHHHhCCCccccEEEEE-eCC-e
Q psy17832 74 ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVD-----------LMTDLAMDYQVSSVPVLIRM-KDG-R 140 (189)
Q Consensus 74 ~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-----------~~~~~~~~~~v~~~Pt~~~~-~~G-~ 140 (189)
.++.-|++||.+.|++|+.+.|.|+.++++|+ +.++.|++| .+..++++|||..+|+++++ .++ +
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK 196 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence 46778999999999999999999999999995 555555555 34678999999999999999 545 5
Q ss_pred eEEEEecCCcCcHHHHHHH
Q psy17832 141 EQDRFVGFQKSNLEELEAF 159 (189)
Q Consensus 141 ~~~~~~G~~~~~~~~l~~~ 159 (189)
..-...|..+. ++|.+-
T Consensus 197 ~~pv~~G~~s~--~~L~~r 213 (215)
T PF13728_consen 197 WYPVSQGFMSL--DELEDR 213 (215)
T ss_pred EEEEeeecCCH--HHHHHh
Confidence 55566788887 766653
No 147
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.87 E-value=4.3e-08 Score=67.98 Aligned_cols=92 Identities=17% Similarity=0.187 Sum_probs=72.1
Q ss_pred HhCCCcEEEEEecC----CChhhhhhhHHHHHHHHHccCceEEEEEEcCcc--HhHHHhCCCccccEEEEE--eCC--ee
Q psy17832 72 KQASTPVIVDFFAK----WCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM--TDLAMDYQVSSVPVLIRM--KDG--RE 141 (189)
Q Consensus 72 ~~~~k~vvv~f~a~----wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~--~~~~~~~~v~~~Pt~~~~--~~G--~~ 141 (189)
....|+++|+|+++ ||..|+..... .++.+-...++.++..|++.. ..++..++++++|+++++ +++ .+
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~v 92 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTI 92 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEE
Confidence 56799999999999 99999765411 334444455789999998754 468899999999999998 344 46
Q ss_pred EEEEecCCcCcHHHHHHHHHHhcCC
Q psy17832 142 QDRFVGFQKSNLEELEAFVTNAEKP 166 (189)
Q Consensus 142 ~~~~~G~~~~~~~~l~~~l~~~l~~ 166 (189)
+.++.|..+. ++|...|..+...
T Consensus 93 v~~i~G~~~~--~~ll~~L~~~~~~ 115 (116)
T cd02991 93 VGRLEGLIQP--EDLINRLTFIMDA 115 (116)
T ss_pred EEEEeCCCCH--HHHHHHHHHHHhc
Confidence 8899999999 9999999887653
No 148
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.86 E-value=2.9e-08 Score=68.79 Aligned_cols=77 Identities=26% Similarity=0.541 Sum_probs=54.2
Q ss_pred CHHHHHHHHHh---CCCcEEEEEecC-------CChhhhhhhHHHHHHHHHccCceEEEEEEcCccH-------hHHH--
Q psy17832 63 DQKEFEAKVKQ---ASTPVIVDFFAK-------WCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT-------DLAM-- 123 (189)
Q Consensus 63 ~~~~~~~~~~~---~~k~vvv~f~a~-------wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-------~~~~-- 123 (189)
.-++|.+.+.. .+++++|.|+++ |||.|+...|.+++.....+++..|+.|.+...+ .+..
T Consensus 4 gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p 83 (119)
T PF06110_consen 4 GYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDP 83 (119)
T ss_dssp CHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--
T ss_pred CHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcc
Confidence 34667766553 568899999954 9999999999999988887778898888874332 3444
Q ss_pred hCCCccccEEEEEeCC
Q psy17832 124 DYQVSSVPVLIRMKDG 139 (189)
Q Consensus 124 ~~~v~~~Pt~~~~~~G 139 (189)
+++|.++||++-+..+
T Consensus 84 ~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 84 DLKLKGIPTLIRWETG 99 (119)
T ss_dssp CC---SSSEEEECTSS
T ss_pred eeeeeecceEEEECCC
Confidence 5999999999999655
No 149
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.85 E-value=1e-08 Score=66.54 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=46.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccH-----hHHHhCCCccccEEEEEeCCeeE
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT-----DLAMDYQVSSVPVLIRMKDGREQ 142 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-----~~~~~~~v~~~Pt~~~~~~G~~~ 142 (189)
|+.|+++||++|+...+.|+++. .++.+.++.|+.+... .+.+.+++..+|++++ +|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 46799999999999999999875 4445788888876543 2667789999999854 77654
No 150
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.80 E-value=2.3e-07 Score=64.55 Aligned_cols=110 Identities=15% Similarity=0.238 Sum_probs=84.5
Q ss_pred EecCHHHHHHHHHh-CCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccE-EEEEe
Q psy17832 60 QITDQKEFEAKVKQ-ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPV-LIRMK 137 (189)
Q Consensus 60 ~~~~~~~~~~~~~~-~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt-~~~~~ 137 (189)
.+.++..+++++.. .+++|+|.|-..|-+.|.++-..|.+++++.+.-..++.||+++-+++.+.|.+. -|. ++||-
T Consensus 4 ~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~ 82 (133)
T PF02966_consen 4 HLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFF 82 (133)
T ss_dssp EE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEE
T ss_pred ccCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEe
Confidence 46678899988876 6999999999999999999999999999999888999999999999999999999 884 55556
Q ss_pred CCeeEEEEecCCc--C------cHHHHHHHHHHhcCCCCCC
Q psy17832 138 DGREQDRFVGFQK--S------NLEELEAFVTNAEKPAETS 170 (189)
Q Consensus 138 ~G~~~~~~~G~~~--~------~~~~l~~~l~~~l~~~~~~ 170 (189)
+++-+.--.|... . +.+++.+.++-+...+.+.
T Consensus 83 rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~iyrga~kG 123 (133)
T PF02966_consen 83 RNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETIYRGARKG 123 (133)
T ss_dssp TTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHHHHHHHTT
T ss_pred cCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHHHHHhhcC
Confidence 7776543333321 1 3578888887766544443
No 151
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2e-07 Score=67.51 Aligned_cols=109 Identities=16% Similarity=0.221 Sum_probs=76.8
Q ss_pred CCCCeEEecCHHHHHHHHHhCCCcEEEEEe-cCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcC---------------
Q psy17832 54 APSTSFQITDQKEFEAKVKQASTPVIVDFF-AKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVD--------------- 116 (189)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~k~vvv~f~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d--------------- 116 (189)
+|+|.+...+++.+... ...+++|||+|| ..|++.|-.+.-.|+....++.. ++.++.|..|
T Consensus 10 aPdF~Lp~~~g~~v~Ls-d~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~ 88 (157)
T COG1225 10 APDFELPDQDGETVSLS-DLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT 88 (157)
T ss_pred CCCeEeecCCCCEEehH-HhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence 44444455555443322 335789999999 99999999999999999888876 6888888764
Q ss_pred ------ccHhHHHhCCCcc------------ccEEEEE-eCCeeEEEEecCCcC-cHHHHHHHHHHh
Q psy17832 117 ------LMTDLAMDYQVSS------------VPVLIRM-KDGREQDRFVGFQKS-NLEELEAFVTNA 163 (189)
Q Consensus 117 ------~~~~~~~~~~v~~------------~Pt~~~~-~~G~~~~~~~G~~~~-~~~~l~~~l~~~ 163 (189)
...++++.|||.. .++.++| ++|++...+...... ..+++.+.|+++
T Consensus 89 f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 89 FPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred ceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 4557889998743 3556666 899999888555433 346666666654
No 152
>KOG0911|consensus
Probab=98.77 E-value=1e-08 Score=77.33 Aligned_cols=101 Identities=21% Similarity=0.339 Sum_probs=84.8
Q ss_pred ecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCe
Q psy17832 61 ITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGR 140 (189)
Q Consensus 61 ~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~ 140 (189)
+...++| +..+++.+++.||+.||.+|.++...+..+++.. .++.|++++.+..++++..+.+...|.++++..|+
T Consensus 6 i~~~~~f---~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~ 81 (227)
T KOG0911|consen 6 IVFQEQF---LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGE 81 (227)
T ss_pred ehhHHHH---HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeeecch
Confidence 4445666 2448899999999999999999999999888777 68999999999999999999999999999999999
Q ss_pred eEEEEecCCcCcHHHHHHHHHHhcCCCC
Q psy17832 141 EQDRFVGFQKSNLEELEAFVTNAEKPAE 168 (189)
Q Consensus 141 ~~~~~~G~~~~~~~~l~~~l~~~l~~~~ 168 (189)
.+.+..|.... .+...+..+.....
T Consensus 82 ~v~~l~~~~~~---~~~~~~~~~~~~~~ 106 (227)
T KOG0911|consen 82 KVDRLSGADPP---FLVSKVEKLAESGS 106 (227)
T ss_pred hhhhhhccCcH---HHHHHHHHhhhhcc
Confidence 99999998877 55555555554443
No 153
>KOG0913|consensus
Probab=98.75 E-value=3.8e-09 Score=80.00 Aligned_cols=100 Identities=24% Similarity=0.481 Sum_probs=82.5
Q ss_pred eEEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCccHhHHHhCCCccccEEEEE
Q psy17832 58 SFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDLMTDLAMDYQVSSVPVLIRM 136 (189)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 136 (189)
.+..+|.++....+ ..-.++.|+++||+.|....|++..++.--.+ .+.+..||+..++-+.-+|-|..+||++-.
T Consensus 25 ~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHv 101 (248)
T KOG0913|consen 25 KLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHV 101 (248)
T ss_pred eeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEe
Confidence 45566777777653 22368899999999999999999988764444 699999999999999999999999999999
Q ss_pred eCCeeEEEEecCCcCcHHHHHHHHHHh
Q psy17832 137 KDGREQDRFVGFQKSNLEELEAFVTNA 163 (189)
Q Consensus 137 ~~G~~~~~~~G~~~~~~~~l~~~l~~~ 163 (189)
++|.. .+|.|.++. .+++.++...
T Consensus 102 kDGeF-rrysgaRdk--~dfisf~~~r 125 (248)
T KOG0913|consen 102 KDGEF-RRYSGARDK--NDFISFEEHR 125 (248)
T ss_pred ecccc-ccccCcccc--hhHHHHHHhh
Confidence 99955 478999999 8888877643
No 154
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.75 E-value=7e-08 Score=63.13 Aligned_cols=77 Identities=23% Similarity=0.321 Sum_probs=57.7
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCcc----HhHHHhCC--CccccEEEEEeCCeeEEEEecCCcC
Q psy17832 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM----TDLAMDYQ--VSSVPVLIRMKDGREQDRFVGFQKS 151 (189)
Q Consensus 78 vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~----~~~~~~~~--v~~~Pt~~~~~~G~~~~~~~G~~~~ 151 (189)
-|+.|+.+||++|+.....|+++..++ .++.+..+|++.+ .++...++ +..+|++++ +|+.+. |.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~-~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~ig---g~--- 72 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER-DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIG---GC--- 72 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc-cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEc---CH---
Confidence 367899999999999999999998776 4777778888764 35555555 578999765 786653 33
Q ss_pred cHHHHHHHHHHhcC
Q psy17832 152 NLEELEAFVTNAEK 165 (189)
Q Consensus 152 ~~~~l~~~l~~~l~ 165 (189)
++|.+++++.++
T Consensus 73 --~~~~~~~~~~~~ 84 (85)
T PRK11200 73 --TDFEAYVKENLG 84 (85)
T ss_pred --HHHHHHHHHhcc
Confidence 678888777653
No 155
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.75 E-value=1.9e-07 Score=73.11 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=70.9
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCcc-----------HhHHHhCCCccccEEEEE-eC-Ce
Q psy17832 74 ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM-----------TDLAMDYQVSSVPVLIRM-KD-GR 140 (189)
Q Consensus 74 ~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-----------~~~~~~~~v~~~Pt~~~~-~~-G~ 140 (189)
.++.-|++||.+.|++|+++.|.|+.++++|+ +.++.|++|.. ...++++||..+|+++++ .+ ++
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~ 226 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQK 226 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCc
Confidence 35678999999999999999999999999996 55555555543 457899999999999999 45 55
Q ss_pred eEEEEecCCcCcHHHHHHHHHHhcCCC
Q psy17832 141 EQDRFVGFQKSNLEELEAFVTNAEKPA 167 (189)
Q Consensus 141 ~~~~~~G~~~~~~~~l~~~l~~~l~~~ 167 (189)
..-...|..+. ++|.+-|..++..-
T Consensus 227 ~~pv~~G~iS~--deL~~Ri~~v~~~f 251 (256)
T TIGR02739 227 MSPLAYGFISQ--DELKERILNVLTQF 251 (256)
T ss_pred EEEEeeccCCH--HHHHHHHHHHHhcc
Confidence 55556788888 88888887776543
No 156
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.64 E-value=4.9e-07 Score=70.39 Aligned_cols=91 Identities=15% Similarity=0.099 Sum_probs=69.9
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCc---------cHhHHHhCCCccccEEEEE-e-CCeeEE
Q psy17832 75 STPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDL---------MTDLAMDYQVSSVPVLIRM-K-DGREQD 143 (189)
Q Consensus 75 ~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~---------~~~~~~~~~v~~~Pt~~~~-~-~G~~~~ 143 (189)
++.-|++||.+.|++|+++.|.|+.++++|+-.+..+.+|-.. +...+.++||..+|+++++ . .++..-
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~p 222 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRP 222 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEE
Confidence 5577899999999999999999999999996555555555321 2235679999999999999 4 456666
Q ss_pred EEecCCcCcHHHHHHHHHHhcCCC
Q psy17832 144 RFVGFQKSNLEELEAFVTNAEKPA 167 (189)
Q Consensus 144 ~~~G~~~~~~~~l~~~l~~~l~~~ 167 (189)
...|..+. ++|.+-|..++..-
T Consensus 223 v~~G~iS~--deL~~Ri~~v~t~~ 244 (248)
T PRK13703 223 LSYGFITQ--DDLAKRFLNVSTDF 244 (248)
T ss_pred EeeccCCH--HHHHHHHHHHHhcc
Confidence 66788888 88988887776543
No 157
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.61 E-value=3.3e-07 Score=71.10 Aligned_cols=80 Identities=18% Similarity=0.332 Sum_probs=60.9
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEc---------------------------------------
Q psy17832 75 STPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDV--------------------------------------- 115 (189)
Q Consensus 75 ~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~--------------------------------------- 115 (189)
++.+|+.|..+.|++|+++.+.+.++.+ .++.+..+..
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~---~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~ 183 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYNA---LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS 183 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhc---CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence 6788999999999999999999988754 2343333321
Q ss_pred -----CccHhHHHhCCCccccEEEEEeCCeeEEEEecCCcCcHHHHHHHHHHh
Q psy17832 116 -----DLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTNA 163 (189)
Q Consensus 116 -----d~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~l~~~l~~~ 163 (189)
+++.++++++||+++|+++ +.+|+.+ .|..+. +.|.++|++.
T Consensus 184 c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~--~~L~~~l~~~ 230 (232)
T PRK10877 184 CDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGP--KEMKAFLDEH 230 (232)
T ss_pred ccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCH--HHHHHHHHHc
Confidence 1223588999999999988 6788765 788888 8999988864
No 158
>KOG3425|consensus
Probab=98.60 E-value=3.4e-07 Score=62.43 Aligned_cols=74 Identities=24% Similarity=0.503 Sum_probs=59.5
Q ss_pred HHHHHHHHHh--CCCcEEEEEec--------CCChhhhhhhHHHHHHHHHccCceEEEEEEcCcc-------HhHHHhCC
Q psy17832 64 QKEFEAKVKQ--ASTPVIVDFFA--------KWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM-------TDLAMDYQ 126 (189)
Q Consensus 64 ~~~~~~~~~~--~~k~vvv~f~a--------~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-------~~~~~~~~ 126 (189)
.++|++.+.+ +++-++|.|++ +|||.|.+..|.+.+..+..+.++.|+.+++.+. ..+...++
T Consensus 12 ~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~ 91 (128)
T KOG3425|consen 12 YESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPG 91 (128)
T ss_pred HHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCC
Confidence 4667666543 45668999995 5999999999999999888888999999998543 35667777
Q ss_pred C-ccccEEEEEe
Q psy17832 127 V-SSVPVLIRMK 137 (189)
Q Consensus 127 v-~~~Pt~~~~~ 137 (189)
+ .++||++-+.
T Consensus 92 ~lt~vPTLlrw~ 103 (128)
T KOG3425|consen 92 ILTAVPTLLRWK 103 (128)
T ss_pred ceeecceeeEEc
Confidence 7 9999999985
No 159
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.57 E-value=3.8e-07 Score=61.87 Aligned_cols=92 Identities=20% Similarity=0.229 Sum_probs=70.1
Q ss_pred EEecCHHHHHHHHHhCCCcEEEEEecCC--ChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEE
Q psy17832 59 FQITDQKEFEAKVKQASTPVIVDFFAKW--CDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRM 136 (189)
Q Consensus 59 ~~~~~~~~~~~~~~~~~k~vvv~f~a~w--C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 136 (189)
+..++.++++..+.. +...++.|.... ++.+....-.+-++.+.+.+.+..+.++-+...++..+||+..+|+++|+
T Consensus 11 ~~~vd~~~ld~~l~~-~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~ 89 (107)
T PF07449_consen 11 WPRVDADTLDAFLAA-PGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVFF 89 (107)
T ss_dssp EEEE-CCCHHHHHHC-CSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEE
T ss_pred CeeechhhHHHHHhC-CCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEEE
Confidence 344566677776444 444555444332 56667766788889999999999888898888899999999999999999
Q ss_pred eCCeeEEEEecCCcC
Q psy17832 137 KDGREQDRFVGFQKS 151 (189)
Q Consensus 137 ~~G~~~~~~~G~~~~ 151 (189)
++|+.++.+.|..+.
T Consensus 90 R~g~~lG~i~gi~dW 104 (107)
T PF07449_consen 90 RDGRYLGAIEGIRDW 104 (107)
T ss_dssp ETTEEEEEEESSSTH
T ss_pred ECCEEEEEecCeecc
Confidence 999999999998876
No 160
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.48 E-value=1.1e-06 Score=63.05 Aligned_cols=37 Identities=32% Similarity=0.578 Sum_probs=30.4
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEE
Q psy17832 74 ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLA 111 (189)
Q Consensus 74 ~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~ 111 (189)
..+++|+.|+..+|++|+.+.+.+.++..+++ ++.+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~-~~~~~ 40 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP-DVRVV 40 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC-CceEE
Confidence 35778999999999999999999999887775 44333
No 161
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.48 E-value=6.8e-07 Score=67.62 Aligned_cols=76 Identities=22% Similarity=0.335 Sum_probs=54.9
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEc---------------------------------------
Q psy17832 75 STPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDV--------------------------------------- 115 (189)
Q Consensus 75 ~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~--------------------------------------- 115 (189)
++..++.|+.+.|++|+++.+.+.+ ..+++.+..+.+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 5788999999999999999999876 223333333321
Q ss_pred ------CccHhHHHhCCCccccEEEEEeCCeeEEEEecCCcCcHHHHHHHH
Q psy17832 116 ------DLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFV 160 (189)
Q Consensus 116 ------d~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~l~~~l 160 (189)
+.+..+++++||+++|+++ +.+|+.+ .|..+. ++|.++|
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~~---~G~~~~--~~l~~~L 197 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADGRVV---PGAPPA--AQLEALL 197 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCCeEe---cCCCCH--HHHHhhC
Confidence 1122588899999999997 7788764 687776 7776654
No 162
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.44 E-value=1.3e-06 Score=54.66 Aligned_cols=67 Identities=24% Similarity=0.404 Sum_probs=44.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHh----CCCccccEEEEEeCCeeEEEEecCCcCcHH
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMD----YQVSSVPVLIRMKDGREQDRFVGFQKSNLE 154 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~----~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~ 154 (189)
++.|+++||++|+.+...|.+. ++.+..++++........ .++..+|++++ +|+ .+.|... +
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g~~~---~ 67 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSGFRP---D 67 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEecCCH---H
Confidence 4679999999999988777652 456667777766544433 36889999876 553 3445433 4
Q ss_pred HHHHH
Q psy17832 155 ELEAF 159 (189)
Q Consensus 155 ~l~~~ 159 (189)
.|.++
T Consensus 68 ~l~~~ 72 (73)
T cd02976 68 KLRAL 72 (73)
T ss_pred HHHhh
Confidence 55544
No 163
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.43 E-value=2.6e-06 Score=74.17 Aligned_cols=79 Identities=23% Similarity=0.382 Sum_probs=66.4
Q ss_pred CCcEEE-EEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeEEEEecCCcCcH
Q psy17832 75 STPVIV-DFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNL 153 (189)
Q Consensus 75 ~k~vvv-~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~ 153 (189)
++++-| .|.++||++|......+++++...+ ++..-.||....++++.+|+|.++|++++ ||+++ +.|..+.
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~--~~G~~~~-- 547 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQV--YFGKKTI-- 547 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECcccHHHHHhCCceecCEEEE--CCEEE--EeeCCCH--
Confidence 456644 5679999999999999999988875 78888999999999999999999999988 77765 4587766
Q ss_pred HHHHHHH
Q psy17832 154 EELEAFV 160 (189)
Q Consensus 154 ~~l~~~l 160 (189)
++|..+|
T Consensus 548 ~~~~~~~ 554 (555)
T TIGR03143 548 EEMLELI 554 (555)
T ss_pred HHHHHhh
Confidence 8887775
No 164
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.40 E-value=5.3e-06 Score=61.50 Aligned_cols=101 Identities=21% Similarity=0.318 Sum_probs=78.1
Q ss_pred EEecCHHHHHHHHHhCCCc-EEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCc--cccEEEE
Q psy17832 59 FQITDQKEFEAKVKQASTP-VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVS--SVPVLIR 135 (189)
Q Consensus 59 ~~~~~~~~~~~~~~~~~k~-vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~--~~Pt~~~ 135 (189)
+...+.+.+... ...+++ +++.|..........+...++.+++++++++.|+.+|++..+.+...||+. .+|++++
T Consensus 79 v~~~t~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi 157 (184)
T PF13848_consen 79 VPELTPENFEKL-FSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALVI 157 (184)
T ss_dssp CEEESTTHHHHH-HSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEEE
T ss_pred ccccchhhHHHH-hcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEEE
Confidence 344466777766 555555 777777777888899999999999999999999999999989999999998 8999999
Q ss_pred Ee--CCeeEEEEecCCcCcHHHHHHHHHH
Q psy17832 136 MK--DGREQDRFVGFQKSNLEELEAFVTN 162 (189)
Q Consensus 136 ~~--~G~~~~~~~G~~~~~~~~l~~~l~~ 162 (189)
+. +++......+..+. +.|.+||+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~--~~i~~Fl~d 184 (184)
T PF13848_consen 158 FDSNKGKYYYLPEGEITP--ESIEKFLND 184 (184)
T ss_dssp EETTTSEEEE--SSCGCH--HHHHHHHHH
T ss_pred EECCCCcEEcCCCCCCCH--HHHHHHhcC
Confidence 94 55533333555555 999999864
No 165
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.39 E-value=6.1e-06 Score=55.76 Aligned_cols=87 Identities=18% Similarity=0.274 Sum_probs=63.8
Q ss_pred EecCHHHHHHHHHh-CCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccH----hHHHhCCCc-cccEE
Q psy17832 60 QITDQKEFEAKVKQ-ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT----DLAMDYQVS-SVPVL 133 (189)
Q Consensus 60 ~~~~~~~~~~~~~~-~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~----~~~~~~~v~-~~Pt~ 133 (189)
.+.+.+++++.+.. .+++++|+=.++.|+........|++......+++.++.+|+-+.. .++.+|||. .-|-+
T Consensus 3 ~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ 82 (105)
T PF11009_consen 3 PLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQV 82 (105)
T ss_dssp E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEE
T ss_pred ccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcE
Confidence 35678899888665 4888998889999999999999999999988877999999997765 578899986 47999
Q ss_pred EEEeCCeeEEEEe
Q psy17832 134 IRMKDGREQDRFV 146 (189)
Q Consensus 134 ~~~~~G~~~~~~~ 146 (189)
+++++|+++..-.
T Consensus 83 ili~~g~~v~~aS 95 (105)
T PF11009_consen 83 ILIKNGKVVWHAS 95 (105)
T ss_dssp EEEETTEEEEEEE
T ss_pred EEEECCEEEEECc
Confidence 9999999986543
No 166
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.39 E-value=2e-06 Score=56.42 Aligned_cols=75 Identities=19% Similarity=0.272 Sum_probs=53.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCcc----HhHHHhCCC--ccccEEEEEeCCeeEEEEecCCcCc
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM----TDLAMDYQV--SSVPVLIRMKDGREQDRFVGFQKSN 152 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~----~~~~~~~~v--~~~Pt~~~~~~G~~~~~~~G~~~~~ 152 (189)
|+.|..+||++|.+....|+++..++. .+.+..+|++.. .++...++- ..+|.+++ +|+.+. |.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~ig---G~---- 71 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHVG---GC---- 71 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEec---CH----
Confidence 567999999999999999988765543 466777777643 356666664 78999855 675542 32
Q ss_pred HHHHHHHHHHhc
Q psy17832 153 LEELEAFVTNAE 164 (189)
Q Consensus 153 ~~~l~~~l~~~l 164 (189)
++|.+++.+..
T Consensus 72 -~dl~~~~~~~~ 82 (86)
T TIGR02183 72 -TDFEQLVKENF 82 (86)
T ss_pred -HHHHHHHHhcc
Confidence 67788777644
No 167
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.38 E-value=3e-06 Score=66.56 Aligned_cols=82 Identities=24% Similarity=0.366 Sum_probs=59.1
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEc---------------------------------------
Q psy17832 75 STPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDV--------------------------------------- 115 (189)
Q Consensus 75 ~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~--------------------------------------- 115 (189)
.+.+|+.|..+.|++|+++...+.++.+. +++.+..+..
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 56788899999999999999999887654 3444443331
Q ss_pred -----------CccHhHHHhCCCccccEEEEEe-CCeeEEEEecCCcCcHHHHHHHHH
Q psy17832 116 -----------DLMTDLAMDYQVSSVPVLIRMK-DGREQDRFVGFQKSNLEELEAFVT 161 (189)
Q Consensus 116 -----------d~~~~~~~~~~v~~~Pt~~~~~-~G~~~~~~~G~~~~~~~~l~~~l~ 161 (189)
+++..+.+++||+++|++++-. +|+ +..+.|+.+. ++|.++|.
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~-~~~v~G~~~~--~~L~~~l~ 249 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGT-LQQVVGLPDP--AQLAEIMG 249 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC-EEEecCCCCH--HHHHHHhC
Confidence 0111477889999999988883 564 3456899888 77777664
No 168
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.35 E-value=4.3e-06 Score=60.71 Aligned_cols=82 Identities=24% Similarity=0.430 Sum_probs=63.4
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHc--cCceEEEEEEcCc----------------------------------
Q psy17832 74 ASTPVIVDFFAKWCDPCKLMAPCLEAIVERM--NGKVQLAKVDVDL---------------------------------- 117 (189)
Q Consensus 74 ~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~--~~~v~~~~vd~d~---------------------------------- 117 (189)
..+++|+.|+...|++|..+.+.+.++.+++ ++++.|+..++-.
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 3577889999999999999999999999998 7788888776510
Q ss_pred ----------------------------------cHhHHHhCCCccccEEEEEeCCeeEEEEecCCcCcHHHHHHHHHH
Q psy17832 118 ----------------------------------MTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTN 162 (189)
Q Consensus 118 ----------------------------------~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~l~~~l~~ 162 (189)
....++++||+++||+++ +|+.+ .|..+. ++|.++|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~~---~~~~~~--~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKYV---VGPYTI--EELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCEE---ETTTSH--HHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEEe---CCCCCH--HHHHHHHcC
Confidence 002556789999999999 99885 566666 899988875
No 169
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.35 E-value=2.9e-06 Score=51.54 Aligned_cols=56 Identities=27% Similarity=0.348 Sum_probs=41.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHh----HHHhCCCccccEEEEEeCCeeE
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTD----LAMDYQVSSVPVLIRMKDGREQ 142 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----~~~~~~v~~~Pt~~~~~~G~~~ 142 (189)
|+.|+.+||++|+.....|++ + ++.|-.+|++..++ +.+..|...+|++++ +|+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~----~--~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE----K--GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH----T--TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH----c--CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence 567999999999999988844 2 46677777777643 334449999999887 77653
No 170
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.29 E-value=5.1e-06 Score=61.32 Aligned_cols=40 Identities=33% Similarity=0.664 Sum_probs=34.2
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEE
Q psy17832 74 ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKV 113 (189)
Q Consensus 74 ~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v 113 (189)
.+++.|+.|+...|++|+.+.+.+.++.+++++++.|..+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~ 53 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKV 53 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEc
Confidence 4678999999999999999999999999998776665543
No 171
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.26 E-value=3.8e-06 Score=54.12 Aligned_cols=58 Identities=21% Similarity=0.231 Sum_probs=43.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccH-----hHHHhCCCccccEEEEEeCCeeE
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT-----DLAMDYQVSSVPVLIRMKDGREQ 142 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-----~~~~~~~v~~~Pt~~~~~~G~~~ 142 (189)
|+.|+++||++|+.....|.++.. .+.++.++.+... .+.+.+|+.++|.+++ +|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~--~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI--GGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 467999999999999999887643 5677778876552 3556678999999743 67654
No 172
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.24 E-value=6.5e-06 Score=52.97 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=42.1
Q ss_pred cEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCcc---HhHHHhCCCccccEEEEEeCCeeE
Q psy17832 77 PVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM---TDLAMDYQVSSVPVLIRMKDGREQ 142 (189)
Q Consensus 77 ~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~---~~~~~~~~v~~~Pt~~~~~~G~~~ 142 (189)
.-|+.|+.+||++|+..+..|++. ++.|..+|++.. .++...+|...+|.+++ +|+.+
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 68 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLI 68 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEE
Confidence 346679999999999999888642 455556676655 34555678899999865 77654
No 173
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.23 E-value=5.5e-05 Score=53.47 Aligned_cols=111 Identities=14% Similarity=0.284 Sum_probs=81.4
Q ss_pred CeEEecCHHHHHHHHHhCCCcEEEEEecC--CChh-h-hhhhHHHHHHHHHccCc-eEEEEEEcCccHhHHHhCCCc--c
Q psy17832 57 TSFQITDQKEFEAKVKQASTPVIVDFFAK--WCDP-C-KLMAPCLEAIVERMNGK-VQLAKVDVDLMTDLAMDYQVS--S 129 (189)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~k~vvv~f~a~--wC~~-C-~~~~p~l~~l~~~~~~~-v~~~~vd~d~~~~~~~~~~v~--~ 129 (189)
.++++++.+.++..... ++..+|-|.-. .|.. + ......|.+++++|+++ +.|+.+|.+....+.+.|||. .
T Consensus 3 ~~~~l~~~~~~~~~C~~-~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~ 81 (130)
T cd02983 3 EIIELTSEDVFEETCEE-KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFG 81 (130)
T ss_pred ceEEecCHHHHHhhccC-CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccC
Confidence 45667676666655433 46667777532 2332 3 45678899999999999 999999999999999999995 4
Q ss_pred ccEEEEEe-CCeeEEEEecCCcCcHHHHHHHHHHhcCCCCCC
Q psy17832 130 VPVLIRMK-DGREQDRFVGFQKSNLEELEAFVTNAEKPAETS 170 (189)
Q Consensus 130 ~Pt~~~~~-~G~~~~~~~G~~~~~~~~l~~~l~~~l~~~~~~ 170 (189)
+|+++++. +++....+.|..+. +.|.+|+++.+......
T Consensus 82 ~P~v~i~~~~~~KY~~~~~~~t~--e~i~~Fv~~~l~Gkl~~ 121 (130)
T cd02983 82 YPAMVAINFRKMKFATLKGSFSE--DGINEFLRELSYGRGPT 121 (130)
T ss_pred CCEEEEEecccCccccccCccCH--HHHHHHHHHHHcCCccc
Confidence 99999993 33222225677777 99999999999877644
No 174
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.21 E-value=7.6e-06 Score=62.42 Aligned_cols=40 Identities=15% Similarity=0.531 Sum_probs=32.7
Q ss_pred CCcEEEEEecCCChhhhhhhHHH---HHHHHHccCceEEEEEE
Q psy17832 75 STPVIVDFFAKWCDPCKLMAPCL---EAIVERMNGKVQLAKVD 114 (189)
Q Consensus 75 ~k~vvv~f~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd 114 (189)
+++.||.|+.-.|++|..+.+.+ +.+.+.+++++.|+.+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence 56789999999999999999876 78888888776665544
No 175
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.19 E-value=2e-05 Score=68.14 Aligned_cols=83 Identities=17% Similarity=0.222 Sum_probs=67.6
Q ss_pred CCcE-EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeEEEEecCCcCcH
Q psy17832 75 STPV-IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNL 153 (189)
Q Consensus 75 ~k~v-vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~ 153 (189)
++++ +..|++++|++|......+++++...+ ++.+-.||....++++.+|+|.++|++++ +|+.. +.|..+.
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~-- 187 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEF--GQGRMTL-- 187 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEE--EecCCCH--
Confidence 3444 778999999999999999999988655 88899999999999999999999999876 66543 5677776
Q ss_pred HHHHHHHHHhc
Q psy17832 154 EELEAFVTNAE 164 (189)
Q Consensus 154 ~~l~~~l~~~l 164 (189)
++|.+.+.+..
T Consensus 188 ~~~~~~~~~~~ 198 (517)
T PRK15317 188 EEILAKLDTGA 198 (517)
T ss_pred HHHHHHHhccc
Confidence 66766666543
No 176
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=98.17 E-value=2.6e-05 Score=56.77 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=51.6
Q ss_pred CCCcEEEEEe-cCCChhhhhh-hHHHHHHHHHccC-ce-EEEEEEcC-----------------------ccHhHHHhCC
Q psy17832 74 ASTPVIVDFF-AKWCDPCKLM-APCLEAIVERMNG-KV-QLAKVDVD-----------------------LMTDLAMDYQ 126 (189)
Q Consensus 74 ~~k~vvv~f~-a~wC~~C~~~-~p~l~~l~~~~~~-~v-~~~~vd~d-----------------------~~~~~~~~~~ 126 (189)
.++++||.|| +.||+.|..+ .+.|.+.++++.. ++ .++.|..| ...++++.||
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~lLsD~~~~~~~~yg 107 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIRFLADGNGEFTKALG 107 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEEEEECCCHHHHHHcC
Confidence 4555666555 9999999999 9999999888864 34 46666653 3446778888
Q ss_pred Cc------c-----ccEEEEEeCCeeEEEEecCC
Q psy17832 127 VS------S-----VPVLIRMKDGREQDRFVGFQ 149 (189)
Q Consensus 127 v~------~-----~Pt~~~~~~G~~~~~~~G~~ 149 (189)
+. + ...++++.+|+++..+....
T Consensus 108 v~~~~~~~~~~~~~~R~~fiId~g~I~~~~~~~~ 141 (155)
T cd03013 108 LTLDLSAAGGGIRSKRYALIVDDGKVKYLFVEED 141 (155)
T ss_pred CCccccccCCcceeeeEEEEECCCEEEEEEEecC
Confidence 63 1 23445556788876665544
No 177
>PHA03050 glutaredoxin; Provisional
Probab=98.16 E-value=1.3e-05 Score=54.75 Aligned_cols=65 Identities=12% Similarity=0.079 Sum_probs=42.9
Q ss_pred HhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCc---c----HhHHHhCCCccccEEEEEeCCeeEE
Q psy17832 72 KQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDL---M----TDLAMDYQVSSVPVLIRMKDGREQD 143 (189)
Q Consensus 72 ~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~---~----~~~~~~~~v~~~Pt~~~~~~G~~~~ 143 (189)
...++ |+.|..+|||+|+.....|+++.-.++ .|-.+|++. . .++.+..|.+.+|++++ +|+.+.
T Consensus 10 i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~iG 81 (108)
T PHA03050 10 LANNK--VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSIG 81 (108)
T ss_pred hccCC--EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEEe
Confidence 44444 566999999999999988876532211 344455543 2 24556678889999865 777654
No 178
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.12 E-value=1.3e-05 Score=49.70 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=41.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHh----HHHhCCCccccEEEEEeCCeeEE
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTD----LAMDYQVSSVPVLIRMKDGREQD 143 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----~~~~~~v~~~Pt~~~~~~G~~~~ 143 (189)
|+.|+++||++|+..+..|.+.. +.|..+|++.+.+ +.+..+...+|++++ +|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIFI--NGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 46789999999999999887653 5666778776654 344457778897754 776664
No 179
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.05 E-value=0.0001 Score=64.28 Aligned_cols=104 Identities=13% Similarity=0.208 Sum_probs=82.5
Q ss_pred HHHHHHHHHh-CCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEE-eCCee
Q psy17832 64 QKEFEAKVKQ-ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRM-KDGRE 141 (189)
Q Consensus 64 ~~~~~~~~~~-~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~-~~G~~ 141 (189)
.+++...+.. .+.+.++.|+.+.|..|..+...+++++ .+.+++.+...|...+.+++++|+|...|++.++ .+|..
T Consensus 354 ~~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~ 432 (555)
T TIGR03143 354 RQQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNY 432 (555)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcc
Confidence 3455555444 3555677888889999999999999988 4556899888999889999999999999999999 46643
Q ss_pred E-EEEecCCcCcHHHHHHHHHHhcCCCCCC
Q psy17832 142 Q-DRFVGFQKSNLEELEAFVTNAEKPAETS 170 (189)
Q Consensus 142 ~-~~~~G~~~~~~~~l~~~l~~~l~~~~~~ 170 (189)
. -+|.|.... .+|..+|..++.-....
T Consensus 433 ~~i~f~g~P~G--~Ef~s~i~~i~~~~~~~ 460 (555)
T TIGR03143 433 TGLKFHGVPSG--HELNSFILALYNAAGPG 460 (555)
T ss_pred cceEEEecCcc--HhHHHHHHHHHHhcCCC
Confidence 3 478899888 99999999998655443
No 180
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.03 E-value=7.5e-05 Score=51.32 Aligned_cols=99 Identities=14% Similarity=0.155 Sum_probs=71.6
Q ss_pred CHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHH---ccCceEEEEEEcCccHhHHHhCCCcc--ccEEEEEe
Q psy17832 63 DQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVER---MNGKVQLAKVDVDLMTDLAMDYQVSS--VPVLIRMK 137 (189)
Q Consensus 63 ~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~---~~~~v~~~~vd~d~~~~~~~~~~v~~--~Pt~~~~~ 137 (189)
+.+.+... ...+.+..+.|| .=..-......+.+++++ +++++.|+.+|.+......+.||+.. +|.+++..
T Consensus 5 t~e~~~~~-~~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~ 81 (111)
T cd03072 5 TFENAEEL-TEEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDS 81 (111)
T ss_pred ccccHHHH-hcCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEc
Confidence 44445433 555666666666 222236778899999999 99999999999999888999999987 89999993
Q ss_pred -CCeeEEE-EecCCcCcHHHHHHHHHHhcCC
Q psy17832 138 -DGREQDR-FVGFQKSNLEELEAFVTNAEKP 166 (189)
Q Consensus 138 -~G~~~~~-~~G~~~~~~~~l~~~l~~~l~~ 166 (189)
++..... +.+..+. +.|.+|+++.+..
T Consensus 82 ~~~~~Ky~~~~~~~t~--~~i~~Fv~~~~~G 110 (111)
T cd03072 82 FRHMYLFPDFEDVYVP--GKLKQFVLDLHSG 110 (111)
T ss_pred chhcCcCCCCccccCH--HHHHHHHHHHhcC
Confidence 3312222 4455555 9999999998753
No 181
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.00 E-value=8.7e-05 Score=64.13 Aligned_cols=82 Identities=16% Similarity=0.221 Sum_probs=66.8
Q ss_pred CcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeEEEEecCCcCcHHH
Q psy17832 76 TPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEE 155 (189)
Q Consensus 76 k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~ 155 (189)
..-+..|.++.|++|....-.+++++...+ ++..-.+|....+++..+|++.++|++++ +|+.+ +.|..+. ++
T Consensus 118 ~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~--~~ 190 (515)
T TIGR03140 118 PLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALFQDEVEALGIQGVPAVFL--NGEEF--HNGRMDL--AE 190 (515)
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhCHHHHHhcCCcccCEEEE--CCcEE--EecCCCH--HH
Confidence 344778999999999999999999988876 78888899999999999999999999877 66543 5677776 66
Q ss_pred HHHHHHHhc
Q psy17832 156 LEAFVTNAE 164 (189)
Q Consensus 156 l~~~l~~~l 164 (189)
+.+.+.+.+
T Consensus 191 ~~~~l~~~~ 199 (515)
T TIGR03140 191 LLEKLEETA 199 (515)
T ss_pred HHHHHhhcc
Confidence 666665553
No 182
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.99 E-value=3.3e-05 Score=48.71 Aligned_cols=62 Identities=21% Similarity=0.427 Sum_probs=43.5
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHh---CCCccccEEEEEeCCeeEEEEecCCcC
Q psy17832 80 VDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMD---YQVSSVPVLIRMKDGREQDRFVGFQKS 151 (189)
Q Consensus 80 v~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~---~~v~~~Pt~~~~~~G~~~~~~~G~~~~ 151 (189)
..|..+||++|+..+..|++ .++.|-.+|++++++.... .|...+|++++ +|.. .+.|+.+.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~--~~~G~~~~ 66 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDL--SWSGFRPD 66 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCc--EEeccCHH
Confidence 46889999999999988864 2566777888877655444 48889999755 4532 34565543
No 183
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.97 E-value=2e-05 Score=50.49 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=39.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHh----HHHhCCCccccEEEEEeCCeeE
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTD----LAMDYQVSSVPVLIRMKDGREQ 142 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----~~~~~~v~~~Pt~~~~~~G~~~ 142 (189)
|+.|+.+||++|......|++. ++.|-.+|++.+++ +.+..|...+|++++ +|+.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 60 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVHV 60 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 3568899999999999888753 34555566666554 344457889999755 77655
No 184
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.97 E-value=0.00012 Score=58.99 Aligned_cols=114 Identities=13% Similarity=0.198 Sum_probs=74.3
Q ss_pred CCCCCCCCCCeEEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhh------HHHHHHHHHcc--CceEEEEEEcCccH
Q psy17832 48 KTPPAEAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMA------PCLEAIVERMN--GKVQLAKVDVDLMT 119 (189)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~------p~l~~l~~~~~--~~v~~~~vd~d~~~ 119 (189)
..|...-.+-++.+ +.++|.+. ..+...++|+|+.+--. -+... ..+-+|+.+.- ..+.|+.||.....
T Consensus 26 efP~YDGkDRVi~L-neKNfk~~-lKkyd~l~l~yh~p~~~-dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~ 102 (383)
T PF01216_consen 26 EFPEYDGKDRVIDL-NEKNFKRA-LKKYDVLVLYYHEPVES-DKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDA 102 (383)
T ss_dssp SSSS-SSS--CEEE--TTTHHHH-HHH-SEEEEEEE--STS-SHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTH
T ss_pred CCccCCCccceEEc-chhHHHHH-HHhhcEEEEEEecCCcc-CHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHH
Confidence 34433344455555 67899987 45556677788876532 22221 22333444333 26999999999999
Q ss_pred hHHHhCCCccccEEEEEeCCeeEEEEecCCcCcHHHHHHHHHHhcCCC
Q psy17832 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEKPA 167 (189)
Q Consensus 120 ~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~l~~~l~~~l~~~ 167 (189)
.+++++|+...+++++|++|+++. |.|..+. +.|..||-.++...
T Consensus 103 klAKKLgv~E~~SiyVfkd~~~IE-ydG~~sa--DtLVeFl~dl~edP 147 (383)
T PF01216_consen 103 KLAKKLGVEEEGSIYVFKDGEVIE-YDGERSA--DTLVEFLLDLLEDP 147 (383)
T ss_dssp HHHHHHT--STTEEEEEETTEEEE-E-S--SH--HHHHHHHHHHHSSS
T ss_pred HHHHhcCccccCcEEEEECCcEEE-ecCccCH--HHHHHHHHHhcccc
Confidence 999999999999999999999985 5699999 99999999998643
No 185
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.96 E-value=5.9e-05 Score=47.46 Aligned_cols=66 Identities=18% Similarity=0.275 Sum_probs=44.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHh---HHHhCCCccccEEEEEeCCeeEEEEecCCcCcHHH
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTD---LAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEE 155 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~ 155 (189)
|+.|..+||++|.+.+..|++. ++.|..+|++.+.. +....|...+|.+++ +|+.+. |. ++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi--~g~~ig---g~-----~~ 66 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI--DGELIG---GS-----DD 66 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE--CCEEEe---CH-----HH
Confidence 5679999999999998887742 45555666665442 334468889999744 676542 32 56
Q ss_pred HHHHH
Q psy17832 156 LEAFV 160 (189)
Q Consensus 156 l~~~l 160 (189)
|.++|
T Consensus 67 l~~~l 71 (72)
T cd03029 67 LEKYF 71 (72)
T ss_pred HHHHh
Confidence 66654
No 186
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.94 E-value=6.3e-05 Score=47.51 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=39.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhH----HHhCCCc-cccEEEEEeCCeeE
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDL----AMDYQVS-SVPVLIRMKDGREQ 142 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~----~~~~~v~-~~Pt~~~~~~G~~~ 142 (189)
++.|+.+||++|......|++. ++.|..+|++.+++. ...++.. .+|++++ +|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEEE
Confidence 4578999999999998888652 456666777765443 3445766 8998754 77655
No 187
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.94 E-value=0.00014 Score=47.09 Aligned_cols=71 Identities=17% Similarity=0.329 Sum_probs=49.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHH---HhCCCccccEEEEEeCCeeEEEEecCCcCcHHH
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLA---MDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEE 155 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~---~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~ 155 (189)
+..|..+||++|...+..|.+ .++.|-.+|++++++.. +..|...+|++++ ++. .+.|+... .
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf~~~---~ 68 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGFRPD---M 68 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecCCHH---H
Confidence 567899999999998888854 25777788888776532 3457789999865 443 34566554 6
Q ss_pred HHHHHHHh
Q psy17832 156 LEAFVTNA 163 (189)
Q Consensus 156 l~~~l~~~ 163 (189)
|.+++...
T Consensus 69 l~~~~~~~ 76 (81)
T PRK10329 69 INRLHPAP 76 (81)
T ss_pred HHHHHHhh
Confidence 76666544
No 188
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.91 E-value=3.9e-05 Score=51.60 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=37.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccH-------hHHHhCCCccccEEEEEeCCeeEE
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT-------DLAMDYQVSSVPVLIRMKDGREQD 143 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-------~~~~~~~v~~~Pt~~~~~~G~~~~ 143 (189)
|+.|..+||++|+.....|.++ .-.+. .+|+|..+ .+.+..|.+.+|.+++ +|+.+.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~----~i~~~--~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~iG 73 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL----GVNPA--VHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKLVG 73 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc----CCCCE--EEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEEEc
Confidence 5569999999999988877654 22334 45554432 2334457789999744 776653
No 189
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.90 E-value=0.00023 Score=47.20 Aligned_cols=92 Identities=18% Similarity=0.237 Sum_probs=67.5
Q ss_pred ecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCC-
Q psy17832 61 ITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDG- 139 (189)
Q Consensus 61 ~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G- 139 (189)
+.+.+++... ...++++||-|+..+|+ .....|.++++.+++.+.|+.+. +.++.+++++. .|++++|+..
T Consensus 4 i~s~~~l~~~-~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~ 75 (97)
T cd02981 4 LTSKEELEKF-LDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVK-PGSVVLFKPFE 75 (97)
T ss_pred cCCHHHHHHH-hccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCC-CCceEEeCCcc
Confidence 4455666664 55678889999999998 46668888999998888887666 45777888776 4888998543
Q ss_pred eeEEEEecCCcCcHHHHHHHHHH
Q psy17832 140 REQDRFVGFQKSNLEELEAFVTN 162 (189)
Q Consensus 140 ~~~~~~~G~~~~~~~~l~~~l~~ 162 (189)
.....+.|.... +.|..||..
T Consensus 76 ~~~~~y~g~~~~--~~l~~fi~~ 96 (97)
T cd02981 76 EEPVEYDGEFTE--ESLVEFIKD 96 (97)
T ss_pred cCCccCCCCCCH--HHHHHHHHh
Confidence 333456776665 899999864
No 190
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.85 E-value=0.00012 Score=46.24 Aligned_cols=57 Identities=14% Similarity=0.295 Sum_probs=41.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccH----hHHHhCCCccccEEEEEeCCeeEE
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT----DLAMDYQVSSVPVLIRMKDGREQD 143 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~----~~~~~~~v~~~Pt~~~~~~G~~~~ 143 (189)
|+.|..+||++|+..+..|++. ++.|-.+|++..+ ++.+..+-..+|.+++ +|+.++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 4568899999999998888752 4556667777655 3555667788999865 776654
No 191
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.82 E-value=0.00022 Score=48.97 Aligned_cols=73 Identities=12% Similarity=0.153 Sum_probs=56.9
Q ss_pred hhhhhhhHHHHHHHHHcc-CceEEEEEEcCccHhHHHhCCCcc----ccEEEEEe-CCeeEEEEecCC-cCcHHHHHHHH
Q psy17832 88 DPCKLMAPCLEAIVERMN-GKVQLAKVDVDLMTDLAMDYQVSS----VPVLIRMK-DGREQDRFVGFQ-KSNLEELEAFV 160 (189)
Q Consensus 88 ~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~~~~~~~v~~----~Pt~~~~~-~G~~~~~~~G~~-~~~~~~l~~~l 160 (189)
..-......+.+++++++ +++.|+.+|.++.....+.||+.. +|.++++. ++ ......+.. +. +.|.+|+
T Consensus 31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~-~KY~~~~~~~t~--e~i~~F~ 107 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKG-KKYVMEEEFSDV--DALEEFL 107 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCC-CccCCCcccCCH--HHHHHHH
Confidence 344678889999999999 799999999998888899999974 99999984 44 222233444 44 8999999
Q ss_pred HHh
Q psy17832 161 TNA 163 (189)
Q Consensus 161 ~~~ 163 (189)
++.
T Consensus 108 ~~f 110 (111)
T cd03073 108 EDF 110 (111)
T ss_pred HHh
Confidence 875
No 192
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.81 E-value=7e-05 Score=48.42 Aligned_cols=78 Identities=23% Similarity=0.308 Sum_probs=57.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeC--CeeEEEEecCCcCcHHHH
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKD--GREQDRFVGFQKSNLEEL 156 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~--G~~~~~~~G~~~~~~~~l 156 (189)
|+.|..+.|+-|......|.++.... .+.+-.||+++++++..+|+. .+|.+.+-.. ........+..+. +.|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~--~~L 76 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDE--EQL 76 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-H--HHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCH--HHH
Confidence 67789999999999999998865443 488999999999999999996 5998666321 1112334566677 888
Q ss_pred HHHHH
Q psy17832 157 EAFVT 161 (189)
Q Consensus 157 ~~~l~ 161 (189)
.++|+
T Consensus 77 ~~~L~ 81 (81)
T PF05768_consen 77 RAWLE 81 (81)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 88875
No 193
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00034 Score=50.18 Aligned_cols=108 Identities=17% Similarity=0.212 Sum_probs=77.7
Q ss_pred CCCCeEEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCc-eEEEEEEcCccH-----------hH
Q psy17832 54 APSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGK-VQLAKVDVDLMT-----------DL 121 (189)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~d~~~-----------~~ 121 (189)
..++.+...+++.+.-. .-++|+++|.=.|+-|+.--+ ...|+.|+++|+++ +.++..-|.+.. .+
T Consensus 5 ~yd~~~~~~~G~~~~l~-~~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~f 82 (162)
T COG0386 5 IYDFSVKDIDGEPVSLS-DYKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKF 82 (162)
T ss_pred cccceeeccCCCCccHH-HhCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHH
Confidence 45677777788777644 457999999999999999885 45899999999874 888877764322 12
Q ss_pred H-HhCCCc-----------------------ccc------------EEEEE-eCCeeEEEEecCCcCcHHHHHHHHHHhc
Q psy17832 122 A-MDYQVS-----------------------SVP------------VLIRM-KDGREQDRFVGFQKSNLEELEAFVTNAE 164 (189)
Q Consensus 122 ~-~~~~v~-----------------------~~P------------t~~~~-~~G~~~~~~~G~~~~~~~~l~~~l~~~l 164 (189)
| ..|||+ ..| +-+++ ++|+++.|+.-.... +++...|+++|
T Consensus 83 C~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P--~d~~~~Ie~lL 160 (162)
T COG0386 83 CQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKP--EDIELAIEKLL 160 (162)
T ss_pred HHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCCh--hhHHHHHHHHh
Confidence 2 134433 011 23344 899999999887777 88888999887
Q ss_pred C
Q psy17832 165 K 165 (189)
Q Consensus 165 ~ 165 (189)
.
T Consensus 161 ~ 161 (162)
T COG0386 161 A 161 (162)
T ss_pred c
Confidence 5
No 194
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.74 E-value=0.00014 Score=47.61 Aligned_cols=58 Identities=29% Similarity=0.418 Sum_probs=44.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEc--Ccc------------------------------HhHHHhCC
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDV--DLM------------------------------TDLAMDYQ 126 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~--d~~------------------------------~~~~~~~~ 126 (189)
|+.|+...|++|..+.+.++++...+.+++.+....+ ... .....++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4679999999999999999999766666666655543 221 13567789
Q ss_pred CccccEEEEE
Q psy17832 127 VSSVPVLIRM 136 (189)
Q Consensus 127 v~~~Pt~~~~ 136 (189)
+.++|++++.
T Consensus 81 ~~g~Pt~v~~ 90 (98)
T cd02972 81 VTGTPTFVVN 90 (98)
T ss_pred CCCCCEEEEC
Confidence 9999998884
No 195
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.71 E-value=0.00044 Score=53.28 Aligned_cols=108 Identities=18% Similarity=0.275 Sum_probs=72.7
Q ss_pred CCCCeEEecCHHHHHHHH--HhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccH------------
Q psy17832 54 APSTSFQITDQKEFEAKV--KQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT------------ 119 (189)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~--~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~------------ 119 (189)
+|...+...+++.....+ ...++|.||+|-+--||+=+.-...|+++.++|.+.+.|+.|-+.+..
T Consensus 79 APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~~~~~ 158 (237)
T PF00837_consen 79 APNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFGNNPY 158 (237)
T ss_pred CCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCCCCce
Confidence 334444444555522221 457999999999999999999999999999999986677766542210
Q ss_pred ----------------------------------hHHHhCCCcccc-EEEEEeCCeeEEEE-ecCCcCcHHHHHHHHHHh
Q psy17832 120 ----------------------------------DLAMDYQVSSVP-VLIRMKDGREQDRF-VGFQKSNLEELEAFVTNA 163 (189)
Q Consensus 120 ----------------------------------~~~~~~~v~~~P-t~~~~~~G~~~~~~-~G~~~~~~~~l~~~l~~~ 163 (189)
.....|| .+| .++++++|+++... .|+.....+++++||++.
T Consensus 159 ~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~Yg--A~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 159 EIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYG--ALPERLYIIQDGKVVYKGGPGPFGYSPEELREWLEKY 236 (237)
T ss_pred eecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhC--CCcceEEEEECCEEEEeCCCCCCcCCHHHHHHHHHhc
Confidence 1223333 456 45566999987532 444445789999999874
No 196
>KOG3170|consensus
Probab=97.69 E-value=0.00032 Score=52.40 Aligned_cols=100 Identities=17% Similarity=0.390 Sum_probs=76.7
Q ss_pred EecCHHHHHHHHHh--CCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEe
Q psy17832 60 QITDQKEFEAKVKQ--ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMK 137 (189)
Q Consensus 60 ~~~~~~~~~~~~~~--~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~ 137 (189)
..+++.+|...+.. .+-.|||..|...-+-|.-+..+|+.++.+|+ .+.|+++-.... ...|-=..+||+++|.
T Consensus 94 ~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp-~iKFVki~at~c---IpNYPe~nlPTl~VY~ 169 (240)
T KOG3170|consen 94 FPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFP-QIKFVKIPATTC---IPNYPESNLPTLLVYH 169 (240)
T ss_pred eeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCC-cceEEecccccc---cCCCcccCCCeEEEee
Confidence 34478888777664 47889999999999999999999999999997 888888765443 2334455689999999
Q ss_pred CCeeEEEEecCC-----cCcHHHHHHHHHHh
Q psy17832 138 DGREQDRFVGFQ-----KSNLEELEAFVTNA 163 (189)
Q Consensus 138 ~G~~~~~~~G~~-----~~~~~~l~~~l~~~ 163 (189)
.|-+...+.|.. ..+.+++..+|-+.
T Consensus 170 ~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 170 HGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred cchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 998877776553 33567777777654
No 197
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.67 E-value=0.00046 Score=46.19 Aligned_cols=51 Identities=20% Similarity=0.142 Sum_probs=36.3
Q ss_pred CCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHh----HHHhCCCccccEEEEEeCCeeEE
Q psy17832 85 KWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTD----LAMDYQVSSVPVLIRMKDGREQD 143 (189)
Q Consensus 85 ~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----~~~~~~v~~~Pt~~~~~~G~~~~ 143 (189)
+||++|......|.++ ++.|..+|++.+++ +.+..|...+|.+++ +|+.+.
T Consensus 25 ~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g~~iG 79 (97)
T TIGR00365 25 PQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KGEFVG 79 (97)
T ss_pred CCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--CCEEEe
Confidence 8999999998888664 34566778766654 334456778998765 776553
No 198
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00043 Score=60.52 Aligned_cols=87 Identities=20% Similarity=0.275 Sum_probs=70.0
Q ss_pred CCeEEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHH---HHHHHHccCceEEEEEEcCccHhHHHhCC------
Q psy17832 56 STSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCL---EAIVERMNGKVQLAKVDVDLMTDLAMDYQ------ 126 (189)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~~~~~~------ 126 (189)
+......+.+.|... ...+||++|-.-.+||..|+.|..+- .++++-+...++-++||-++-+++-+.|.
T Consensus 25 PV~W~pW~~eAf~~A-~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~ 103 (667)
T COG1331 25 PVDWYPWGEEAFAKA-KEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAI 103 (667)
T ss_pred CccccccCHHHHHHH-HHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHh
Confidence 444556677888876 77899999999999999999987664 45666666789999999999988776664
Q ss_pred --CccccEEEEE-eCCeeEE
Q psy17832 127 --VSSVPVLIRM-KDGREQD 143 (189)
Q Consensus 127 --v~~~Pt~~~~-~~G~~~~ 143 (189)
--++|..+|. .+|++..
T Consensus 104 tG~GGWPLtVfLTPd~kPFf 123 (667)
T COG1331 104 TGQGGWPLTVFLTPDGKPFF 123 (667)
T ss_pred ccCCCCceeEEECCCCceee
Confidence 5689988888 9999875
No 199
>KOG2603|consensus
Probab=97.61 E-value=0.00043 Score=55.07 Aligned_cols=111 Identities=21% Similarity=0.375 Sum_probs=81.0
Q ss_pred CCCCeEEecCHHHHHHHHHh--CCCcEEEEEecC----CChhhhhhhHHHHHHHHHccC--------ceEEEEEEcCccH
Q psy17832 54 APSTSFQITDQKEFEAKVKQ--ASTPVIVDFFAK----WCDPCKLMAPCLEAIVERMNG--------KVQLAKVDVDLMT 119 (189)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~--~~k~vvv~f~a~----wC~~C~~~~p~l~~l~~~~~~--------~v~~~~vd~d~~~ 119 (189)
.+..++.. +.+.|...+.. ++-.++++|.|. .|.-|+.+..+++-++.-+.. ++-|..||.++.+
T Consensus 38 s~~~VI~~-n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p 116 (331)
T KOG2603|consen 38 SESGVIRM-NDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP 116 (331)
T ss_pred CCCCeEEe-cCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH
Confidence 44555555 45777777654 356677888865 499999999999988885542 5889999999999
Q ss_pred hHHHhCCCccccEEEEE--eCCeeEE--EE----ecCCcCcHHHHHHHHHHhcCCCC
Q psy17832 120 DLAMDYQVSSVPVLIRM--KDGREQD--RF----VGFQKSNLEELEAFVTNAEKPAE 168 (189)
Q Consensus 120 ~~~~~~~v~~~Pt~~~~--~~G~~~~--~~----~G~~~~~~~~l~~~l~~~l~~~~ 168 (189)
++.+.++++.+|++++| ..|+... .+ .|.. . |++.+|+++..+-..
T Consensus 117 ~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~-A--e~iaqfv~~~tkv~v 170 (331)
T KOG2603|consen 117 QVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFE-A--EQIAQFVADRTKVNV 170 (331)
T ss_pred HHHHHhcccCCCeEEEeCCCccccccCccchhhhcchh-H--HHHHHHHHHhhhhee
Confidence 99999999999999999 4555432 11 1222 3 788888887765433
No 200
>KOG3171|consensus
Probab=97.58 E-value=0.00021 Score=53.97 Aligned_cols=108 Identities=17% Similarity=0.341 Sum_probs=83.9
Q ss_pred CCCCeEEecCHHHHHHHHHhC--CCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCcccc
Q psy17832 54 APSTSFQITDQKEFEAKVKQA--STPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVP 131 (189)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~--~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~P 131 (189)
...+++++.++++|...|... .-.++|..|-+.-.-|..+...+.=|+..|+ .+.|+++-.... ....+|...++|
T Consensus 136 ~~~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP-~vKFckikss~~-gas~~F~~n~lP 213 (273)
T KOG3171|consen 136 RYGFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP-IVKFCKIKSSNT-GASDRFSLNVLP 213 (273)
T ss_pred ccceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC-ceeEEEeeeccc-cchhhhcccCCc
Confidence 457899999999999886543 4556788999999999999999999999997 899998875543 446889999999
Q ss_pred EEEEEeCCeeEEEEecCCcC-----cHHHHHHHHHHh
Q psy17832 132 VLIRMKDGREQDRFVGFQKS-----NLEELEAFVTNA 163 (189)
Q Consensus 132 t~~~~~~G~~~~~~~G~~~~-----~~~~l~~~l~~~ 163 (189)
+++||++|.++..|+..... .-..+..||++.
T Consensus 214 ~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 214 TLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred eEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 99999999998765533211 114566666654
No 201
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.58 E-value=0.00048 Score=45.38 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=35.3
Q ss_pred CCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHh----HHHhCCCccccEEEEEeCCeeE
Q psy17832 85 KWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTD----LAMDYQVSSVPVLIRMKDGREQ 142 (189)
Q Consensus 85 ~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----~~~~~~v~~~Pt~~~~~~G~~~ 142 (189)
+||++|+.....|++. ++.|..+|++.+.+ +.+..|...+|.+++ +|+.+
T Consensus 21 ~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~~i 74 (90)
T cd03028 21 PRCGFSRKVVQILNQL------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGELV 74 (90)
T ss_pred CCCcHHHHHHHHHHHc------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCEEE
Confidence 7999999998888764 25566667666554 344457788999744 77654
No 202
>PRK10638 glutaredoxin 3; Provisional
Probab=97.57 E-value=0.00036 Score=45.15 Aligned_cols=57 Identities=14% Similarity=0.222 Sum_probs=40.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHh----HHHhCCCccccEEEEEeCCeeEE
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTD----LAMDYQVSSVPVLIRMKDGREQD 143 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----~~~~~~v~~~Pt~~~~~~G~~~~ 143 (189)
++.|..+||++|+..+..|++. ++.+..+|++...+ +.+..+...+|++++ +|+.+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~ig 64 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHIG 64 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 5568899999999999888753 45555677766553 445557888998744 776654
No 203
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00044 Score=44.62 Aligned_cols=56 Identities=20% Similarity=0.299 Sum_probs=38.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccH-----hHHHhC-CCccccEEEEEeCCeeE
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT-----DLAMDY-QVSSVPVLIRMKDGREQ 142 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-----~~~~~~-~v~~~Pt~~~~~~G~~~ 142 (189)
++.|..+|||+|.+....|.+ ..+.|..++++... +..++. |.+.+|.+++ +|+.+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~i 64 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKHV 64 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEEE
Confidence 567889999999998888773 24555555555444 334444 7899999877 66533
No 204
>PRK10824 glutaredoxin-4; Provisional
Probab=97.41 E-value=0.0011 Score=45.82 Aligned_cols=51 Identities=22% Similarity=0.181 Sum_probs=34.1
Q ss_pred CCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHH----HhCCCccccEEEEEeCCeeEE
Q psy17832 85 KWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLA----MDYQVSSVPVLIRMKDGREQD 143 (189)
Q Consensus 85 ~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~----~~~~v~~~Pt~~~~~~G~~~~ 143 (189)
+||++|+.....|..+ . +.|..+|++++.++. +.-|.+.+|.+++ +|+.++
T Consensus 28 p~Cpyc~~ak~lL~~~----~--i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~IG 82 (115)
T PRK10824 28 PSCGFSAQAVQALSAC----G--ERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGELVG 82 (115)
T ss_pred CCCchHHHHHHHHHHc----C--CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEEEc
Confidence 5999999998888764 2 333345665555433 3346678888777 887764
No 205
>KOG1752|consensus
Probab=97.25 E-value=0.0017 Score=43.92 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=41.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccH-hHHHh----CCCccccEEEEEeCCeeEE
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT-DLAMD----YQVSSVPVLIRMKDGREQD 143 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-~~~~~----~~v~~~Pt~~~~~~G~~~~ 143 (189)
||.|..+||++|+.+...|.+ +.....++.+|-+.+. ++.+. -+.+.+|.+++ +|+.++
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~iG 79 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFIG 79 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEEc
Confidence 456999999999997766665 5556777777766543 33333 34668898777 887663
No 206
>PTZ00062 glutaredoxin; Provisional
Probab=97.22 E-value=0.002 Score=49.06 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=35.9
Q ss_pred cCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHH----HhCCCccccEEEEEeCCeeEE
Q psy17832 84 AKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLA----MDYQVSSVPVLIRMKDGREQD 143 (189)
Q Consensus 84 a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~----~~~~v~~~Pt~~~~~~G~~~~ 143 (189)
.|||++|++....|++. ++.|..+|++++.++. +..|...+|.+++ +|+.++
T Consensus 125 ~p~C~~C~~~k~~L~~~------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~~IG 180 (204)
T PTZ00062 125 FPFCRFSNAVVNMLNSS------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV--NGELIG 180 (204)
T ss_pred CCCChhHHHHHHHHHHc------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--CCEEEc
Confidence 47999999988877753 4556677777666543 3346677888776 786653
No 207
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=97.16 E-value=0.0017 Score=48.32 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=26.0
Q ss_pred EEecCCChhhhhhhHHHHHHHHHccCceEEEEE
Q psy17832 81 DFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKV 113 (189)
Q Consensus 81 ~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v 113 (189)
.|..|+|+.|-...|.+.++..+|+.++.|-.|
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 588999999999999999999999987655544
No 208
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=97.15 E-value=0.0055 Score=46.77 Aligned_cols=108 Identities=23% Similarity=0.272 Sum_probs=76.9
Q ss_pred CCeEEecCHHHHHHHHHhCCCcEEEEEecCCCh-hhhhhhHHHHHHHHHcc-C---c--eEEEEEEcCcc----------
Q psy17832 56 STSFQITDQKEFEAKVKQASTPVIVDFFAKWCD-PCKLMAPCLEAIVERMN-G---K--VQLAKVDVDLM---------- 118 (189)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~-~C~~~~p~l~~l~~~~~-~---~--v~~~~vd~d~~---------- 118 (189)
++.+...+++.|... ..++++++|.|.-+.|+ .|-.+...+..+.++.. . + +.|+.||-+.+
T Consensus 49 ~f~l~d~~G~~~~~~-~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 49 DFELTDQDGKPFTLK-DLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred ceeeecCCCCEeecc-ccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 577777788888765 45899999999988886 68888888888877776 2 3 55555553221
Q ss_pred -----------------HhHHHhCCCcc---------------ccEEEEE-eCCeeEEEEecCCcCcHHHHHHHHHHhcC
Q psy17832 119 -----------------TDLAMDYQVSS---------------VPVLIRM-KDGREQDRFVGFQKSNLEELEAFVTNAEK 165 (189)
Q Consensus 119 -----------------~~~~~~~~v~~---------------~Pt~~~~-~~G~~~~~~~G~~~~~~~~l~~~l~~~l~ 165 (189)
.++++.|+|.. ...++++ .+|++...+.+.... +.+.+.|++++.
T Consensus 128 ~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~--~~i~~~l~~l~~ 205 (207)
T COG1999 128 LNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPP--EEIAADLKKLLK 205 (207)
T ss_pred ccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCCh--HHHHHHHHHHhh
Confidence 13566666552 2245555 799999888777776 899999988875
Q ss_pred C
Q psy17832 166 P 166 (189)
Q Consensus 166 ~ 166 (189)
.
T Consensus 206 ~ 206 (207)
T COG1999 206 E 206 (207)
T ss_pred c
Confidence 4
No 209
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=97.07 E-value=0.0033 Score=46.64 Aligned_cols=64 Identities=22% Similarity=0.272 Sum_probs=46.5
Q ss_pred CCCCCeEEecCHHHHHHHHHhCCCcEEEEEecCCC-hhhhhhhHHHHHHHHHcc---CceEEEEEEcCc
Q psy17832 53 EAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWC-DPCKLMAPCLEAIVERMN---GKVQLAKVDVDL 117 (189)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC-~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~ 117 (189)
..+++.+...+++.+... ..+||++||.|.-+.| ..|-.....+.++.+++. .++.++.|.+|.
T Consensus 31 ~~~~f~L~d~~G~~~~~~-~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP 98 (174)
T PF02630_consen 31 IVPDFTLTDQDGKTVTLD-DLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP 98 (174)
T ss_dssp SSST-EEEETTSSEEEGG-GGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred cCCCcEEEcCCCCEecHH-HhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence 366788888888877643 4479999999999999 678888888877776554 357777777653
No 210
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.99 E-value=0.0095 Score=39.78 Aligned_cols=98 Identities=20% Similarity=0.309 Sum_probs=69.2
Q ss_pred EecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCc--cHhHHHhCCCc----cccE-
Q psy17832 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDL--MTDLAMDYQVS----SVPV- 132 (189)
Q Consensus 60 ~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~--~~~~~~~~~v~----~~Pt- 132 (189)
.+.+-++|..++..++ .|+|.|..+-= .-......|.++++...+.-.++.|||.+ ...+|+++.|. --|.
T Consensus 5 ~i~d~KdfKKLLRTr~-NVLvLy~ks~k-~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~ 82 (112)
T cd03067 5 DISDHKDFKKLLRTRN-NVLVLYSKSAK-SAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVE 82 (112)
T ss_pred cccchHHHHHHHhhcC-cEEEEEecchh-hHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcch
Confidence 4567789988754444 46665654443 33344558888999999998999999987 66899999998 4553
Q ss_pred EEEEeCCeeEEEEecCCcCcHHHHHHHHH
Q psy17832 133 LIRMKDGREQDRFVGFQKSNLEELEAFVT 161 (189)
Q Consensus 133 ~~~~~~G~~~~~~~G~~~~~~~~l~~~l~ 161 (189)
+..|++|.....|...... ..+..|+.
T Consensus 83 LkHYKdG~fHkdYdR~~t~--kSmv~Flr 109 (112)
T cd03067 83 LKHYKDGDFHTEYNRQLTF--KSMVAFLR 109 (112)
T ss_pred hhcccCCCccccccchhhH--HHHHHHhh
Confidence 4445899877766555555 77777765
No 211
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=96.98 E-value=0.017 Score=40.04 Aligned_cols=100 Identities=20% Similarity=0.289 Sum_probs=63.2
Q ss_pred cCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHH-HHc--cCceEEEEEEcC-----ccHhHHHhCCC--cccc
Q psy17832 62 TDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIV-ERM--NGKVQLAKVDVD-----LMTDLAMDYQV--SSVP 131 (189)
Q Consensus 62 ~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~-~~~--~~~v~~~~vd~d-----~~~~~~~~~~v--~~~P 131 (189)
+|.-+|+.. ..+.+.++|.|=... |--.-...|.+++ +.. .+++.++.|-+. ++.+|+++|+| ..+|
T Consensus 9 LD~~tFdKv-i~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fP 85 (126)
T PF07912_consen 9 LDELTFDKV-IPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFP 85 (126)
T ss_dssp ESTTHHHHH-GGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-S
T ss_pred ccceehhhe-eccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCC
Confidence 356678766 556788999886332 2223344677777 332 247888888764 56799999999 5689
Q ss_pred EEEEEe-CCeeEEEEecCCcCcHHHHHHHHHHhc
Q psy17832 132 VLIRMK-DGREQDRFVGFQKSNLEELEAFVTNAE 164 (189)
Q Consensus 132 t~~~~~-~G~~~~~~~G~~~~~~~~l~~~l~~~l 164 (189)
.+++|. +....-++....+.+.+.|..|+.+..
T Consensus 86 v~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t 119 (126)
T PF07912_consen 86 VIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNT 119 (126)
T ss_dssp EEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTS
T ss_pred EEEEecCCCCCCccCCccCCccHHHHHHHHHhCC
Confidence 999995 444555663333334499999998764
No 212
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=96.93 E-value=0.013 Score=43.62 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=29.8
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHc-cCceEEEEEE
Q psy17832 78 VIVDFFAKWCDPCKLMAPCLEAIVERM-NGKVQLAKVD 114 (189)
Q Consensus 78 vvv~f~a~wC~~C~~~~p~l~~l~~~~-~~~v~~~~vd 114 (189)
.|..|+..-||+|-...+.|.++.+.+ +-++.+.-+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence 367888999999999999999999999 3355555554
No 213
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.86 E-value=0.0035 Score=52.80 Aligned_cols=56 Identities=13% Similarity=0.253 Sum_probs=40.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHh---HHHh---------CCCccccEEEEEeCCeeE
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTD---LAMD---------YQVSSVPVLIRMKDGREQ 142 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~~~~---------~~v~~~Pt~~~~~~G~~~ 142 (189)
|+.|..+||++|+.....|.+. ++.|-.+|+++.+. +..+ .|.+.+|++++ +|+.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i 71 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI 71 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence 6679999999999988887653 46666777776653 2222 46788999866 67654
No 214
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.013 Score=45.64 Aligned_cols=38 Identities=29% Similarity=0.483 Sum_probs=29.2
Q ss_pred hHHHhCCCccccEEEEEeCCeeEEEEecCCcCcHHHHHHHHHHhc
Q psy17832 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTNAE 164 (189)
Q Consensus 120 ~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~l~~~l~~~l 164 (189)
.++..+||.++||+++ +|+ .+.|..+. ++|.+.|...+
T Consensus 206 ~~a~~~gv~gTPt~~v--~~~---~~~g~~~~--~~l~~~i~~~~ 243 (244)
T COG1651 206 KLAQQLGVNGTPTFIV--NGK---LVPGLPDL--DELKAIIDEAL 243 (244)
T ss_pred HHHHhcCCCcCCeEEE--CCe---eecCCCCH--HHHHHHHHHhh
Confidence 3667789999999888 554 45677776 88888888764
No 215
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.035 Score=41.57 Aligned_cols=91 Identities=18% Similarity=0.204 Sum_probs=65.5
Q ss_pred CCcEEEEEe-cCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcC----------------------------ccHhHHHh
Q psy17832 75 STPVIVDFF-AKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVD----------------------------LMTDLAMD 124 (189)
Q Consensus 75 ~k~vvv~f~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d----------------------------~~~~~~~~ 124 (189)
+|.+||.|| ++.=+-|-.+...|.+.+.++.. ++.++.+.+| ...++++.
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ 112 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARA 112 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHH
Confidence 588999999 88899999999999999998876 4777777764 34478999
Q ss_pred CCCcc----c--cEEEEE-eCCeeEEEEecCCc--CcHHHHHHHHHHhcC
Q psy17832 125 YQVSS----V--PVLIRM-KDGREQDRFVGFQK--SNLEELEAFVTNAEK 165 (189)
Q Consensus 125 ~~v~~----~--Pt~~~~-~~G~~~~~~~G~~~--~~~~~l~~~l~~~l~ 165 (189)
||+-. . =.++++ ++|.+........+ .+.+++...|+.+.-
T Consensus 113 ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAlq~ 162 (194)
T COG0450 113 YGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQF 162 (194)
T ss_pred cCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHHHH
Confidence 98753 1 134444 89987654444333 245788888877654
No 216
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.58 E-value=0.068 Score=35.82 Aligned_cols=95 Identities=14% Similarity=0.088 Sum_probs=63.4
Q ss_pred EecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeC-
Q psy17832 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKD- 138 (189)
Q Consensus 60 ~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~- 138 (189)
.+.+.++++..+...+.++||-|+..--. .....|.++++.+++++.|+... ..++...+++. .|.++++++
T Consensus 4 ~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~ 76 (102)
T cd03066 4 IINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFYEPF 76 (102)
T ss_pred EcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEeCCC
Confidence 44567778777431566777777766444 35567888999998888885433 44667788775 688899844
Q ss_pred CeeEEEE-ecCCcCcHHHHHHHHHHh
Q psy17832 139 GREQDRF-VGFQKSNLEELEAFVTNA 163 (189)
Q Consensus 139 G~~~~~~-~G~~~~~~~~l~~~l~~~ 163 (189)
......+ .|.... +.|..||...
T Consensus 77 ~e~~~~y~~g~~~~--~~l~~fi~~~ 100 (102)
T cd03066 77 MEEPVTIPDKPYSE--EELVDFVEEH 100 (102)
T ss_pred CCCCcccCCCCCCH--HHHHHHHHHh
Confidence 3333345 555555 8999998753
No 217
>KOG1651|consensus
Probab=96.43 E-value=0.022 Score=41.46 Aligned_cols=109 Identities=13% Similarity=0.119 Sum_probs=75.0
Q ss_pred CCCCeEEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCcc--------H----h
Q psy17832 54 APSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDLM--------T----D 120 (189)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~--------~----~ 120 (189)
..++..+.++++.+.-. .-+|++++|.=-|+.|+.=..-...|..|+++|++ .+.++..-|.+. . .
T Consensus 14 iydf~~~d~~G~~v~l~-~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f 92 (171)
T KOG1651|consen 14 IYDFSAKDLDGEYVSLS-QYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNF 92 (171)
T ss_pred eeeeEEecCCCCCccHH-HhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHH
Confidence 56788888888776544 55799888888899999999778899999999976 477776665321 1 1
Q ss_pred HHHhCCCc-------------------------------c----ccEEEEEeCCeeEEEEecCCcCcHHHHHHHHHHhcC
Q psy17832 121 LAMDYQVS-------------------------------S----VPVLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEK 165 (189)
Q Consensus 121 ~~~~~~v~-------------------------------~----~Pt~~~~~~G~~~~~~~G~~~~~~~~l~~~l~~~l~ 165 (189)
++.+|+.. . +=-+++-++|+++.|+.-..+. -.+..-|+++|.
T Consensus 93 ~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p--~~~~~dIe~lL~ 170 (171)
T KOG1651|consen 93 VKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSP--LDIEKDIEKLLA 170 (171)
T ss_pred HHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCc--cccchhHHHHhc
Confidence 22334321 0 1123333999999999766655 566666777664
No 218
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.28 E-value=0.036 Score=40.73 Aligned_cols=69 Identities=22% Similarity=0.328 Sum_probs=53.8
Q ss_pred hhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCC-eeEEEEecC-CcCcHHHHHHHHHHhcCC
Q psy17832 92 LMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDG-REQDRFVGF-QKSNLEELEAFVTNAEKP 166 (189)
Q Consensus 92 ~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~G~-~~~~~~~l~~~l~~~l~~ 166 (189)
.+...|.++++.+.+++.|+.+. +.++++.+++.. |++++|+.+ .....+.|. ... +.|..||....-+
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~--~~l~~fI~~~~~P 77 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTP--EELKKFIKKNSFP 77 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSH--HHHHHHHHHHSST
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCH--HHHHHHHHHhccc
Confidence 34567889999999889999887 677899999998 999999653 344567776 455 9999999987543
No 219
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.09 E-value=0.11 Score=34.90 Aligned_cols=90 Identities=16% Similarity=0.259 Sum_probs=61.5
Q ss_pred ecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEe---
Q psy17832 61 ITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMK--- 137 (189)
Q Consensus 61 ~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~--- 137 (189)
+.+.++++..+ ..++++||-|+..--. .....|.++++.+++++.|+... ..++...|++ .|++++|+
T Consensus 5 i~s~~~l~~f~-~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~ 75 (104)
T cd03069 5 LRTEAEFEKFL-SDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLFRPPR 75 (104)
T ss_pred cCCHHHHHHHh-ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEEechh
Confidence 44667777764 4567778888766444 45668888999998888886443 3467788888 67777772
Q ss_pred ------CCeeEEEEecCCcCcHHHHHHHHHHh
Q psy17832 138 ------DGREQDRFVGFQKSNLEELEAFVTNA 163 (189)
Q Consensus 138 ------~G~~~~~~~G~~~~~~~~l~~~l~~~ 163 (189)
.+. ..+.|..+. +.|..||...
T Consensus 76 ~~~k~de~~--~~y~g~~~~--~~l~~fi~~~ 103 (104)
T cd03069 76 LSNKFEDSS--VKFDGDLDS--SKIKKFIREN 103 (104)
T ss_pred hhcccCccc--ccccCcCCH--HHHHHHHHhh
Confidence 222 235676555 8999998753
No 220
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.94 E-value=0.12 Score=39.77 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=36.1
Q ss_pred HHHhCCCccccEEEEEeCCeeEEEEecCCcCcHHHHHHHHHHhcCCCCCC
Q psy17832 121 LAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEKPAETS 170 (189)
Q Consensus 121 ~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~l~~~l~~~l~~~~~~ 170 (189)
.+++.||+++|+|+| +|+. ...|..+. +.|...|.++++.....
T Consensus 176 ~A~e~gI~gVP~fv~--d~~~--~V~Gaq~~--~v~~~al~~~~~~~~~~ 219 (225)
T COG2761 176 AAQEMGIRGVPTFVF--DGKY--AVSGAQPY--DVLEDALRQLLAEKAEE 219 (225)
T ss_pred HHHHCCCccCceEEE--cCcE--eecCCCCH--HHHHHHHHHHHhccccc
Confidence 567789999999999 5544 35799999 99999999999876654
No 221
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.93 E-value=0.042 Score=39.60 Aligned_cols=56 Identities=23% Similarity=0.335 Sum_probs=38.5
Q ss_pred EEEecC------CChhhhhhhHHHHHHHHHccCceEEEEEEcCccHh----HHHhCCC----ccccEEEEEeCCeeEE
Q psy17832 80 VDFFAK------WCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTD----LAMDYQV----SSVPVLIRMKDGREQD 143 (189)
Q Consensus 80 v~f~a~------wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----~~~~~~v----~~~Pt~~~~~~G~~~~ 143 (189)
+.|+++ +|++|+..+..|+.+ ++.|..+|++.+.+ +.+.++. ..+|.+++ +|+.+.
T Consensus 3 vlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IG 72 (147)
T cd03031 3 VLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYLG 72 (147)
T ss_pred EEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEEe
Confidence 445666 999999988888653 46677788876654 4444554 67888766 776654
No 222
>KOG2792|consensus
Probab=95.68 E-value=0.054 Score=42.33 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=67.8
Q ss_pred CCCeEEecCHHHHHHHHHhCCCcEEEEEecCCCh-hhhhhhHHHHHHHHHccCc------eEEEEEEcCcc---------
Q psy17832 55 PSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCD-PCKLMAPCLEAIVERMNGK------VQLAKVDVDLM--------- 118 (189)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~-~C~~~~p~l~~l~~~~~~~------v~~~~vd~d~~--------- 118 (189)
-+|.+...+++.+.+. .-.||.++|+|--+.|| .|-.+...+.++.++...+ =.|+.||-..+
T Consensus 120 GpF~L~d~~Gk~~te~-df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~ 198 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEK-DFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYV 198 (280)
T ss_pred CceEEEecCCCeeccc-ccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHH
Confidence 4555666666666543 33599999999999998 5888777776666655432 25777775322
Q ss_pred -----------------HhHHHhCCCcccc-------------EEEEE---eCCeeEEEEecCCcCcHHHHHHHHHHhcC
Q psy17832 119 -----------------TDLAMDYQVSSVP-------------VLIRM---KDGREQDRFVGFQKSNLEELEAFVTNAEK 165 (189)
Q Consensus 119 -----------------~~~~~~~~v~~~P-------------t~~~~---~~G~~~~~~~G~~~~~~~~l~~~l~~~l~ 165 (189)
..+|++|.|..-+ ++++| .+|+.+..+--..+. +++.+.|.+.+.
T Consensus 199 ~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~--~~~~~~I~~~v~ 276 (280)
T KOG2792|consen 199 SEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDA--DELADSILKHVA 276 (280)
T ss_pred HhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCH--HHHHHHHHHHHH
Confidence 2477777765322 34444 789888655333345 677776665543
No 223
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=95.60 E-value=0.07 Score=33.52 Aligned_cols=59 Identities=22% Similarity=0.311 Sum_probs=49.3
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHcc-CceEEEEEEcCccHhHHHhCCCccccEEEEE
Q psy17832 78 VIVDFFAKWCDPCKLMAPCLEAIVERMN-GKVQLAKVDVDLMTDLAMDYQVSSVPVLIRM 136 (189)
Q Consensus 78 vvv~f~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 136 (189)
.+..|-+..-+..+.....+.++.+++. +++.+-.||+.++++++..++|-.+||++-.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 4555666666889999999999888774 4789999999999999999999999997654
No 224
>KOG2640|consensus
Probab=95.59 E-value=0.0038 Score=49.77 Aligned_cols=88 Identities=16% Similarity=0.279 Sum_probs=65.6
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeEEEEecCCcCcHH
Q psy17832 75 STPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLE 154 (189)
Q Consensus 75 ~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~ 154 (189)
...|-+.||++||+..+.+.|.+.-....|..--.|..=+....+.+..+|++++.|++++.. -..-.++.|.... .
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n-~t~~~~~~~~r~l--~ 152 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLN-QTCPASYRGERDL--A 152 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceeec-cccchhhcccccH--H
Confidence 566888999999999999999998888777632333322233456788999999999988873 2334456677776 8
Q ss_pred HHHHHHHHhcC
Q psy17832 155 ELEAFVTNAEK 165 (189)
Q Consensus 155 ~l~~~l~~~l~ 165 (189)
.|..+..+++.
T Consensus 153 sLv~fy~~i~~ 163 (319)
T KOG2640|consen 153 SLVNFYTEITP 163 (319)
T ss_pred HHHHHHHhhcc
Confidence 89999888875
No 225
>KOG2507|consensus
Probab=95.34 E-value=0.18 Score=42.10 Aligned_cols=90 Identities=14% Similarity=0.233 Sum_probs=63.2
Q ss_pred hCCCcEEEEEecCCChhhhhhhHH-H-HH-HHHHccCceEEEEEEcCc--cHhHHHhCCCccccEEEEE-eCCeeEEEEe
Q psy17832 73 QASTPVIVDFFAKWCDPCKLMAPC-L-EA-IVERMNGKVQLAKVDVDL--MTDLAMDYQVSSVPVLIRM-KDGREQDRFV 146 (189)
Q Consensus 73 ~~~k~vvv~f~a~wC~~C~~~~p~-l-~~-l~~~~~~~v~~~~vd~d~--~~~~~~~~~v~~~Pt~~~~-~~G~~~~~~~ 146 (189)
.+.+.+||.|.+.......++... + .. ..+..-..++.++|+... ...+..-|.+..+|+++|| ..|..+..+.
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevit 95 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVIT 95 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEee
Confidence 356778888888887777776521 2 22 222222345666665543 3467778899999999999 9999999999
Q ss_pred cCCcCcHHHHHHHHHHhc
Q psy17832 147 GFQKSNLEELEAFVTNAE 164 (189)
Q Consensus 147 G~~~~~~~~l~~~l~~~l 164 (189)
|.... ++|..-|.+.+
T Consensus 96 g~v~a--deL~~~i~Kv~ 111 (506)
T KOG2507|consen 96 GFVTA--DELASSIEKVW 111 (506)
T ss_pred ccccH--HHHHHHHHHHH
Confidence 99987 88877777653
No 226
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=95.20 E-value=0.74 Score=32.73 Aligned_cols=88 Identities=11% Similarity=0.093 Sum_probs=61.6
Q ss_pred CCCcEEEEEecCCC----hhhhhhhHHHHHHHHHccCceEEEEEEcCccH------------------hHHHhCCCcccc
Q psy17832 74 ASTPVIVDFFAKWC----DPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT------------------DLAMDYQVSSVP 131 (189)
Q Consensus 74 ~~k~vvv~f~a~wC----~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~------------------~~~~~~~v~~~P 131 (189)
..|+.+|+.+.+.- ..|+...- =+.+.+-.+.++.+..-|+.... ...+.++...+|
T Consensus 20 e~K~L~VYLH~~~~~~t~~Fc~~~L~-se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~fP 98 (136)
T cd02990 20 DRKLLAIYLHHDESVLSNVFCSQLLC-AESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQLP 98 (136)
T ss_pred hcceEEEEEcCCCCccHHHHHHHHhc-CHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCCC
Confidence 48999999998875 45555421 03333344467888888876542 245567899999
Q ss_pred EEEEE-eCC---eeEEEEecCCcCcHHHHHHHHHHhc
Q psy17832 132 VLIRM-KDG---REQDRFVGFQKSNLEELEAFVTNAE 164 (189)
Q Consensus 132 t~~~~-~~G---~~~~~~~G~~~~~~~~l~~~l~~~l 164 (189)
.+.++ +.. .++.++.|..+. +++...|.+.+
T Consensus 99 ~~avI~~~~~~~~vl~~i~G~~~~--~ell~~L~~~v 133 (136)
T cd02990 99 AILIIMGKRSSNEVLNVIQGNTGV--DELLMRLIEAM 133 (136)
T ss_pred eEEEEEecCCceEEEEEEECCCCH--HHHHHHHHHHH
Confidence 99888 333 567899999988 88888887765
No 227
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=95.15 E-value=0.56 Score=31.08 Aligned_cols=85 Identities=20% Similarity=0.291 Sum_probs=55.4
Q ss_pred HHHHHHHHhCCCcE-EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeE-
Q psy17832 65 KEFEAKVKQASTPV-IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQ- 142 (189)
Q Consensus 65 ~~~~~~~~~~~k~v-vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~- 142 (189)
+++...+..=.++| ++.|.... ..|..+...+++++.-- +++.+...+.+. ..|++.+..+|+..
T Consensus 8 ~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS-dkI~~~~~~~~~-----------~~P~~~i~~~~~~~g 74 (94)
T cd02974 8 QQLKAYLERLENPVELVASLDDS-EKSAELLELLEEIASLS-DKITLEEDNDDE-----------RKPSFSINRPGEDTG 74 (94)
T ss_pred HHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhC-CceEEEEecCCC-----------CCCEEEEecCCCccc
Confidence 44554443324445 44555544 99999888888887643 466665433322 37999998666332
Q ss_pred EEEecCCcCcHHHHHHHHHHhc
Q psy17832 143 DRFVGFQKSNLEELEAFVTNAE 164 (189)
Q Consensus 143 ~~~~G~~~~~~~~l~~~l~~~l 164 (189)
-+|.|.... .++..+|..++
T Consensus 75 IrF~GiP~G--hEf~Slilai~ 94 (94)
T cd02974 75 IRFAGIPMG--HEFTSLVLALL 94 (94)
T ss_pred EEEEecCCc--hhHHHHHHHhC
Confidence 478898888 89999887664
No 228
>KOG0855|consensus
Probab=94.83 E-value=0.15 Score=37.39 Aligned_cols=78 Identities=18% Similarity=0.248 Sum_probs=43.0
Q ss_pred CCCCeEEecCHHHHHHHHHhCCCcEEEEEe-cCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcC---------------
Q psy17832 54 APSTSFQITDQKEFEAKVKQASTPVIVDFF-AKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVD--------------- 116 (189)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~k~vvv~f~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d--------------- 116 (189)
.|++++...|++.+...-...+++||++|| +..-+-|-+..=-|+.-+++++. ...++.+..|
T Consensus 69 iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqKaF~sKqnlP 148 (211)
T KOG0855|consen 69 IPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQKAFASKQNLP 148 (211)
T ss_pred CCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHHHHhhhhccCC
Confidence 445555555555554322345678999999 44445555444444444444443 4556666554
Q ss_pred ------ccHhHHHhCCCcccc
Q psy17832 117 ------LMTDLAMDYQVSSVP 131 (189)
Q Consensus 117 ------~~~~~~~~~~v~~~P 131 (189)
...++.+.+|+...|
T Consensus 149 YhLLSDpk~e~ik~lGa~k~p 169 (211)
T KOG0855|consen 149 YHLLSDPKNEVIKDLGAPKDP 169 (211)
T ss_pred eeeecCcchhHHHHhCCCCCC
Confidence 334677777776544
No 229
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.42 E-value=0.76 Score=39.91 Aligned_cols=91 Identities=14% Similarity=0.199 Sum_probs=63.2
Q ss_pred HHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeE-E
Q psy17832 65 KEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQ-D 143 (189)
Q Consensus 65 ~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~-~ 143 (189)
+++...+..=.++|-|.++.+.|..|..+...++++++-- +++.+...+.+ ...|++.+..+|+.. -
T Consensus 8 ~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i 75 (517)
T PRK15317 8 TQLKQYLELLERPIELVASLDDSEKSAELKELLEEIASLS-DKITVEEDSLD-----------VRKPSFSITRPGEDTGV 75 (517)
T ss_pred HHHHHHHHhCCCCEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEccCC-----------CCCCEEEEEcCCccceE
Confidence 4455554433556666666668999999999998887654 56666443321 237999888766543 4
Q ss_pred EEecCCcCcHHHHHHHHHHhcCCCCC
Q psy17832 144 RFVGFQKSNLEELEAFVTNAEKPAET 169 (189)
Q Consensus 144 ~~~G~~~~~~~~l~~~l~~~l~~~~~ 169 (189)
+|.|.... .+|..||..++.-...
T Consensus 76 ~f~g~P~g--~Ef~s~i~~i~~~~~~ 99 (517)
T PRK15317 76 RFAGIPMG--HEFTSLVLALLQVGGH 99 (517)
T ss_pred EEEecCcc--HHHHHHHHHHHHhcCC
Confidence 78899888 9999999998765443
No 230
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.23 E-value=0.91 Score=39.43 Aligned_cols=93 Identities=18% Similarity=0.276 Sum_probs=64.3
Q ss_pred HHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCee-EE
Q psy17832 65 KEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGRE-QD 143 (189)
Q Consensus 65 ~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~-~~ 143 (189)
+++...+..=.++|.|.++...|..|..+...++++++- .+++.+...+.+. ...|++.+..+|+. --
T Consensus 8 ~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-s~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i 76 (515)
T TIGR03140 8 AQLKSYLASLENPVTLVLSAGSHEKSKELLELLDEIASL-SDKISLTQNTADT----------LRKPSFTILRDGADTGI 76 (515)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCchhHHHHHHHHHHHHh-CCCeEEEEecCCc----------CCCCeEEEecCCcccce
Confidence 445555443355566656655799999999888888765 4577775444332 34699988877653 35
Q ss_pred EEecCCcCcHHHHHHHHHHhcCCCCCC
Q psy17832 144 RFVGFQKSNLEELEAFVTNAEKPAETS 170 (189)
Q Consensus 144 ~~~G~~~~~~~~l~~~l~~~l~~~~~~ 170 (189)
+|.|.... .+|..+|..++.-....
T Consensus 77 ~f~g~P~g--~Ef~s~i~~i~~~~~~~ 101 (515)
T TIGR03140 77 RFAGIPGG--HEFTSLVLAILQVGGHG 101 (515)
T ss_pred EEEecCCc--HHHHHHHHHHHHhcCCC
Confidence 78899988 99999999988655443
No 231
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=93.75 E-value=0.78 Score=32.59 Aligned_cols=74 Identities=16% Similarity=0.239 Sum_probs=54.2
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCc----cccEEEEEeCCeeEEEEecCCcCcH
Q psy17832 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVS----SVPVLIRMKDGREQDRFVGFQKSNL 153 (189)
Q Consensus 78 vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~----~~Pt~~~~~~G~~~~~~~G~~~~~~ 153 (189)
-++.|++|.|+=|.....+++. ..+.+-.+..++...+-++|||. +-=|.++ +|+.+ .|-.+.
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~------~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy~v---EGHVPa-- 93 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKA------NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGYYV---EGHVPA-- 93 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHh------CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCEEE---eccCCH--
Confidence 4677899999999997766652 36777778888888888889875 3335555 88766 476777
Q ss_pred HHHHHHHHHhc
Q psy17832 154 EELEAFVTNAE 164 (189)
Q Consensus 154 ~~l~~~l~~~l 164 (189)
+.+..+|++--
T Consensus 94 ~aI~~ll~~~p 104 (149)
T COG3019 94 EAIARLLAEKP 104 (149)
T ss_pred HHHHHHHhCCC
Confidence 77777776654
No 232
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=93.11 E-value=0.43 Score=31.14 Aligned_cols=74 Identities=19% Similarity=0.145 Sum_probs=58.4
Q ss_pred cEEEEEecCCChhhhhhhHHHHHHHHHcc-CceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeEEEEecCCcC
Q psy17832 77 PVIVDFFAKWCDPCKLMAPCLEAIVERMN-GKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKS 151 (189)
Q Consensus 77 ~vvv~f~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~ 151 (189)
.++=.|.+..-+.++.....+.++.+.+- +.+.+=.||+.++++++..++|-++||++-. .-..+.++.|-.+.
T Consensus 4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~-~P~P~rriiGdls~ 78 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKI-LPPPVRKIIGDLSD 78 (87)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhc-CCCCcceeeccccc
Confidence 45556778888999999999999877554 4688888999999999999999999996655 23356677787654
No 233
>PRK09301 circadian clock protein KaiB; Provisional
Probab=93.03 E-value=0.42 Score=32.17 Aligned_cols=76 Identities=18% Similarity=0.156 Sum_probs=60.6
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHcc-CceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeEEEEecCCcC
Q psy17832 75 STPVIVDFFAKWCDPCKLMAPCLEAIVERMN-GKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKS 151 (189)
Q Consensus 75 ~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~ 151 (189)
...++=.|.+..-+..+.....+.++.+.+- +.+.+=.||+.++++++..++|-++||++-. .-..+.++.|-.+.
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~-~P~P~rriiGDlsd 81 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKI-LPPPVRKIIGDLSD 81 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhc-CCCCcceeeccccc
Confidence 4456667778889999999999999877554 4688888999999999999999999996655 23456678887755
No 234
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=92.80 E-value=1.2 Score=27.69 Aligned_cols=73 Identities=15% Similarity=0.107 Sum_probs=42.5
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEe--CCeeEEEEecCCcCcHHHHH
Q psy17832 80 VDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMK--DGREQDRFVGFQKSNLEELE 157 (189)
Q Consensus 80 v~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~--~G~~~~~~~G~~~~~~~~l~ 157 (189)
..|+.++|++|++.+-.|... +-.+.+..+|.....++ +.-+...+|+++.-. +|+.+. +. ..|.
T Consensus 3 ~Ly~~~~~p~c~kv~~~L~~~----gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~------eS--~~I~ 69 (77)
T cd03040 3 TLYQYKTCPFCCKVRAFLDYH----GIPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQLV------DS--SVII 69 (77)
T ss_pred EEEEcCCCHHHHHHHHHHHHC----CCceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEEE------cH--HHHH
Confidence 457789999999988666543 21344444443333333 334566799876542 244331 12 5777
Q ss_pred HHHHHhcC
Q psy17832 158 AFVTNAEK 165 (189)
Q Consensus 158 ~~l~~~l~ 165 (189)
++|++.|+
T Consensus 70 ~yL~~~~~ 77 (77)
T cd03040 70 STLKTYLG 77 (77)
T ss_pred HHHHHHcC
Confidence 88877663
No 235
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=92.55 E-value=1.3 Score=27.77 Aligned_cols=72 Identities=14% Similarity=0.108 Sum_probs=39.3
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCc--cHhHHHhCCCccccEEEEEeCCeeEEEEecCCcCcHHHHH
Q psy17832 80 VDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDL--MTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELE 157 (189)
Q Consensus 80 v~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~--~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~l~ 157 (189)
..|+.++|++|++.+-.|.+.. -.+.+..++.+. ..++.+.-+...+|+++.-.+|..+. .. ..|.
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~g----i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~------es--~~I~ 70 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELE----LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMF------ES--ADIV 70 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcC----CcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEE------cH--HHHH
Confidence 4567889999999887665532 123333333222 23444444567889874423343221 11 5677
Q ss_pred HHHHHh
Q psy17832 158 AFVTNA 163 (189)
Q Consensus 158 ~~l~~~ 163 (189)
.+|++.
T Consensus 71 ~yL~~~ 76 (77)
T cd03041 71 KYLFKT 76 (77)
T ss_pred HHHHHh
Confidence 776653
No 236
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=92.47 E-value=0.75 Score=28.23 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=37.4
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCc-cHhHHHhCCCccccEEEEEeCCeeE
Q psy17832 80 VDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDL-MTDLAMDYQVSSVPVLIRMKDGREQ 142 (189)
Q Consensus 80 v~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-~~~~~~~~~v~~~Pt~~~~~~G~~~ 142 (189)
+.|+.+||++|++.+-.+.+. +-.+.+..+|... ..++.+......+|++.. .+|..+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~----gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~l 60 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA----GITVELREVELKNKPAEMLAASPKGTVPVLVL-GNGTVI 60 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc----CCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcEE
Confidence 347789999999987666543 2246666676543 345555556778999753 346543
No 237
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=92.27 E-value=2.5 Score=28.58 Aligned_cols=95 Identities=14% Similarity=0.162 Sum_probs=58.5
Q ss_pred EecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCC
Q psy17832 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDG 139 (189)
Q Consensus 60 ~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G 139 (189)
.+.+.++++..+...++.+||-|+..--+ .....+.++++.+++++.|+... ...+..++++. .|.+++|+--
T Consensus 4 ~i~s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~-~~~vvl~rp~ 76 (107)
T cd03068 4 QLQTLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVS-PGQLVVFQPE 76 (107)
T ss_pred EcCCHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCC-CCceEEECcH
Confidence 45567778876544436777777766444 45667888999998888886443 34677888876 4556666222
Q ss_pred eeE-------EEEecC-CcCcHHHHHHHHHH
Q psy17832 140 REQ-------DRFVGF-QKSNLEELEAFVTN 162 (189)
Q Consensus 140 ~~~-------~~~~G~-~~~~~~~l~~~l~~ 162 (189)
+.. ..+.|. ... .+.|.+||++
T Consensus 77 ~~~~k~e~~~~~~~~~~~~~-~~~~~~f~~~ 106 (107)
T cd03068 77 KFQSKYEPKSHVLNKKDSTS-EDELKDFFKE 106 (107)
T ss_pred HHhhhcCcceeeeeccccch-HHHHHHHHhc
Confidence 111 233554 333 1338888864
No 238
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=91.88 E-value=0.97 Score=26.68 Aligned_cols=56 Identities=18% Similarity=0.105 Sum_probs=35.5
Q ss_pred EEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccH--hHHHhCCCccccEEEEEeCCeeE
Q psy17832 81 DFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT--DLAMDYQVSSVPVLIRMKDGREQ 142 (189)
Q Consensus 81 ~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~--~~~~~~~v~~~Pt~~~~~~G~~~ 142 (189)
.|+.++|+.|++.+-.++.. +-.+....++.+... ++.+..+-..+|++.. +|..+
T Consensus 3 ly~~~~~~~~~~~~~~l~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~~~ 60 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEK----GLPYELVPVDLGEGEQEEFLALNPLGKVPVLED--GGLVL 60 (71)
T ss_pred EEeCCCCccHHHHHHHHHHc----CCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCEEE
Confidence 57789999999888776553 224555555544332 2455567778998765 45443
No 239
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=91.85 E-value=1.6 Score=30.66 Aligned_cols=103 Identities=15% Similarity=0.179 Sum_probs=51.0
Q ss_pred EecCHHHHHHHHHhCCCcEEEEEecCCChhh-hhhhHHHHHHHHH--ccCc--eEEEEEEcCccHhHHHhC-C-CccccE
Q psy17832 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPC-KLMAPCLEAIVER--MNGK--VQLAKVDVDLMTDLAMDY-Q-VSSVPV 132 (189)
Q Consensus 60 ~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C-~~~~p~l~~l~~~--~~~~--v~~~~vd~d~~~~~~~~~-~-v~~~Pt 132 (189)
++.+.++++..+......+| .+..+-|+=- -..+|........ .+++ .+|+..|.+........| + -.+-|+
T Consensus 20 eL~T~e~Vd~~~~~~~GTtl-VvVNSVCGCAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt~~aR~yf~~~pPSSPS 98 (136)
T PF06491_consen 20 ELTTAEEVDEALKNKEGTTL-VVVNSVCGCAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEATAKAREYFEPYPPSSPS 98 (136)
T ss_dssp E--SHHHHHHHHHH--SEEE-EEEE-SSHHHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHHHHHHHTSTTS---SSE
T ss_pred ccCCHHHHHHHHhCCCCcEE-EEEeccccccccccCHHHHHHHhCCCCCCceEEeccCCCHHHHHHHHHhcCCCCCCCch
Confidence 56688999998774444344 4556667622 3445665443332 2223 344444544443333323 1 246789
Q ss_pred EEEEeCCeeEEEEecCCcC--cHHHHHHHHHHh
Q psy17832 133 LIRMKDGREQDRFVGFQKS--NLEELEAFVTNA 163 (189)
Q Consensus 133 ~~~~~~G~~~~~~~G~~~~--~~~~l~~~l~~~ 163 (189)
+.+|++|+++..+....-+ ..+.|..-|..+
T Consensus 99 ~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~a 131 (136)
T PF06491_consen 99 IALFKDGELVHFIERHHIEGRPAEEIAENLQDA 131 (136)
T ss_dssp EEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHH
T ss_pred heeeeCCEEEEEeehhhcCCCCHHHHHHHHHHH
Confidence 9999999998755332211 225666555544
No 240
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=91.56 E-value=1.8 Score=33.57 Aligned_cols=43 Identities=21% Similarity=0.368 Sum_probs=36.5
Q ss_pred hCCCcEEEEEecCCChhhhhhhHHHHHHHHHccC----ceEEEEEEc
Q psy17832 73 QASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG----KVQLAKVDV 115 (189)
Q Consensus 73 ~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~----~v~~~~vd~ 115 (189)
..|+++||-+-..+|..|..-...|+.|..++.. +|.|+.||-
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~ 70 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNH 70 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcC
Confidence 3589999999999999999988999888876653 699999984
No 241
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=91.56 E-value=0.44 Score=33.60 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=20.4
Q ss_pred cHhHHHhCCCccccEEEEEeCCe
Q psy17832 118 MTDLAMDYQVSSVPVLIRMKDGR 140 (189)
Q Consensus 118 ~~~~~~~~~v~~~Pt~~~~~~G~ 140 (189)
++.+.++|+|+.+|++++.+++.
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGL 82 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCC
Confidence 57899999999999999997664
No 242
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=91.41 E-value=0.26 Score=33.59 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=44.7
Q ss_pred CeEEecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCc
Q psy17832 57 TSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDL 117 (189)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~ 117 (189)
+....++++.+.-. .-+||++||.=.|+-|+.-. ....|++|+++|++ .+.++..-|.+
T Consensus 4 f~~~~~~G~~v~l~-~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 4 FSAKDIDGKPVSLS-KYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp SEEEBTTSSEEEGG-GGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred eeeeCCCCCEECHH-HcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 34455555554422 34689999988999999999 77799999999985 58888887754
No 243
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=91.06 E-value=1.2 Score=27.25 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=32.5
Q ss_pred EEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCee
Q psy17832 81 DFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGRE 141 (189)
Q Consensus 81 ~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~ 141 (189)
.|+.++|++|++.+-.|... +-.+..+.++.+......+..+-..+|+++. .+|..
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~----gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~~ 58 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK----NIPVEQIILQNDDEATPIRMIGAKQVPILEK-DDGSF 58 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc----CCCeEEEECCCCchHHHHHhcCCCccCEEEe-CCCeE
Confidence 46788999999888666543 1234444555443333334444567888643 34543
No 244
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=90.96 E-value=0.3 Score=32.80 Aligned_cols=57 Identities=12% Similarity=0.021 Sum_probs=32.2
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCcc----HhHHHhCCCccccEEEEE-eCCeeE
Q psy17832 80 VDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM----TDLAMDYQVSSVPVLIRM-KDGREQ 142 (189)
Q Consensus 80 v~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~----~~~~~~~~v~~~Pt~~~~-~~G~~~ 142 (189)
..|+.++|+.|++....|++. ++.|-.+|+.+. .++..-++-.+.+.--++ ++|...
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~ 63 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPY 63 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchH
Confidence 468899999999988777652 344445555432 233333333333333444 455443
No 245
>PHA03075 glutaredoxin-like protein; Provisional
Probab=90.20 E-value=0.6 Score=32.02 Aligned_cols=30 Identities=13% Similarity=0.413 Sum_probs=25.4
Q ss_pred CcEEEEEecCCChhhhhhhHHHHHHHHHcc
Q psy17832 76 TPVIVDFFAKWCDPCKLMAPCLEAIVERMN 105 (189)
Q Consensus 76 k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~ 105 (189)
|.++|.|.-|.|+-|+.....+.++.++|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 458999999999999999998877766664
No 246
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.19 E-value=0.86 Score=28.78 Aligned_cols=56 Identities=21% Similarity=0.315 Sum_probs=36.1
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCcc--------------H--hHHHhCCCccccEEEEEeCCeeE
Q psy17832 80 VDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM--------------T--DLAMDYQVSSVPVLIRMKDGREQ 142 (189)
Q Consensus 80 v~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~--------------~--~~~~~~~v~~~Pt~~~~~~G~~~ 142 (189)
+.|++.-||.|.....+|+++. +.+-.|++... + +-.+..|--++|.++. .+|+++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~------v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vV 76 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN------VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVV 76 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC------CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEE
Confidence 5699999999999888887753 22334444322 2 2234566678998554 577665
No 247
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=90.10 E-value=1.5 Score=26.65 Aligned_cols=55 Identities=20% Similarity=0.178 Sum_probs=34.8
Q ss_pred EEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCc----cHhHHHhCCCccccEEEEEeCCe
Q psy17832 81 DFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDL----MTDLAMDYQVSSVPVLIRMKDGR 140 (189)
Q Consensus 81 ~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~----~~~~~~~~~v~~~Pt~~~~~~G~ 140 (189)
.|+.++|++|++.+-.+... +-.+....++... ..++.+......+|++.. .+|.
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~----~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~ 61 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEK----GIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL-DDGT 61 (74)
T ss_pred EEeCCCCcchHHHHHHHHHc----CCCceEEEeecccCccCCHHHHhhCCCCCCCEEEe-CCCC
Confidence 57788999999988776553 2234455555422 345555556678899764 3443
No 248
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.78 E-value=0.68 Score=34.89 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=34.9
Q ss_pred hHHHhCCCccccEEEEEeCCeeEEEEec--CCcCcHHHHHHHHHHhcC
Q psy17832 120 DLAMDYQVSSVPVLIRMKDGREQDRFVG--FQKSNLEELEAFVTNAEK 165 (189)
Q Consensus 120 ~~~~~~~v~~~Pt~~~~~~G~~~~~~~G--~~~~~~~~l~~~l~~~l~ 165 (189)
.+++++++.++||+++-++|+....-.| +.+. +.+..+|.+.+.
T Consensus 165 ~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~--~~~~arl~~~~~ 210 (212)
T COG3531 165 RLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSP--DAWLARLAQRLA 210 (212)
T ss_pred HHHHHhccCCCCeeeeeeCCceEeccCCcccCCc--HHHHHHHHHHHh
Confidence 4788999999999999999998765566 4454 788888877664
No 249
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=89.60 E-value=3.4 Score=25.56 Aligned_cols=71 Identities=17% Similarity=0.135 Sum_probs=48.2
Q ss_pred EecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCcc-HhHHHhCCCccccEEEEEeCCeeEEEEecCCcCcHHHHHHHH
Q psy17832 82 FFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM-TDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFV 160 (189)
Q Consensus 82 f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~l~~~l 160 (189)
|+.++|++|++..=.++.. +-.+.+..++..+. .++.....-..+|++. .+|..+. +. ..|.++|
T Consensus 2 y~~~~Sp~~~kv~~~l~~~----~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~------dS--~~I~~yL 67 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEK----GIPYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT------DS--AAIIEYL 67 (75)
T ss_dssp EEETTSHHHHHHHHHHHHH----TEEEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE------SH--HHHHHHH
T ss_pred CCcCCChHHHHHHHHHHHc----CCeEEEeccCcccchhHHHhhcccccceEEE--ECCEEEe------CH--HHHHHHH
Confidence 6789999999988665432 12466667776553 5666667778899987 4676543 22 5788888
Q ss_pred HHhcCC
Q psy17832 161 TNAEKP 166 (189)
Q Consensus 161 ~~~l~~ 166 (189)
++....
T Consensus 68 ~~~~~~ 73 (75)
T PF13417_consen 68 EERYPG 73 (75)
T ss_dssp HHHSTS
T ss_pred HHHcCC
Confidence 877643
No 250
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=89.05 E-value=0.74 Score=31.60 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=24.4
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccH
Q psy17832 80 VDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119 (189)
Q Consensus 80 v~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~ 119 (189)
..|+.++|+.|+.....|++ .++.|-.+|+.+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA------NGIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH------cCCceEEEecCCCh
Confidence 45889999999998877765 24556666665543
No 251
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=88.91 E-value=0.61 Score=31.76 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=33.0
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccH----hHHHhCCCccccEEEEE-eCCee
Q psy17832 80 VDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT----DLAMDYQVSSVPVLIRM-KDGRE 141 (189)
Q Consensus 80 v~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~----~~~~~~~v~~~Pt~~~~-~~G~~ 141 (189)
..|+.++|+.|++....|++. ++.|-.+|+..++ ++..-++..+.|..-++ +.|+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~ 62 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKS 62 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCch
Confidence 458899999999988777652 4555556654433 33333333344544455 55543
No 252
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=88.87 E-value=0.79 Score=32.27 Aligned_cols=33 Identities=15% Similarity=0.331 Sum_probs=22.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCc
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDL 117 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~ 117 (189)
+..|+.+||+.|++....|++. ++.|-.+|+.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~------gi~~~~idi~~ 34 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH------DIPFTERNIFS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCcEEeeccC
Confidence 4568899999999988776542 34455555543
No 253
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=88.68 E-value=5.8 Score=27.32 Aligned_cols=87 Identities=13% Similarity=0.054 Sum_probs=55.8
Q ss_pred CCCcEEEEEe-cCCChhhhhhhHHHHHHHHHccC-ceEEEEE-EcCccH-----------hHHHhCCCccc-cEEEEE-e
Q psy17832 74 ASTPVIVDFF-AKWCDPCKLMAPCLEAIVERMNG-KVQLAKV-DVDLMT-----------DLAMDYQVSSV-PVLIRM-K 137 (189)
Q Consensus 74 ~~k~vvv~f~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v-d~d~~~-----------~~~~~~~v~~~-Pt~~~~-~ 137 (189)
++++ ||.|- ..--+.=+.....|+.-...+.+ ++.++.+ +-.... .+.++|++..- -+++++ +
T Consensus 9 ~~R~-lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGK 87 (118)
T PF13778_consen 9 KNRL-LVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGK 87 (118)
T ss_pred cCce-EEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeC
Confidence 3554 44444 44566667777777775555555 4555555 222222 68888986532 255566 9
Q ss_pred CCeeEEEEecCCcCcHHHHHHHHHHh
Q psy17832 138 DGREQDRFVGFQKSNLEELEAFVTNA 163 (189)
Q Consensus 138 ~G~~~~~~~G~~~~~~~~l~~~l~~~ 163 (189)
+|.+..++....+. ++|-..|+.+
T Consensus 88 DG~vK~r~~~p~~~--~~lf~~ID~M 111 (118)
T PF13778_consen 88 DGGVKLRWPEPIDP--EELFDTIDAM 111 (118)
T ss_pred CCcEEEecCCCCCH--HHHHHHHhCC
Confidence 99999888888877 8888888765
No 254
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=88.64 E-value=0.66 Score=31.35 Aligned_cols=42 Identities=21% Similarity=0.036 Sum_probs=27.1
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccH-------hHHHhCCC
Q psy17832 80 VDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT-------DLAMDYQV 127 (189)
Q Consensus 80 v~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-------~~~~~~~v 127 (189)
..|+.+||+.|+.....|++- ++.|-.+|+.+.+ .+...+|+
T Consensus 2 ~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~~p~s~~eL~~~l~~~g~ 50 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRKDGLDAATLERWLAKVGW 50 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCCeEEEecccCCCCHHHHHHHHHHhCh
Confidence 468899999999988777542 4444455554332 45556663
No 255
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=88.06 E-value=2 Score=33.76 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=38.4
Q ss_pred HhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCC-CccccEEEEE
Q psy17832 72 KQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQ-VSSVPVLIRM 136 (189)
Q Consensus 72 ~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~-v~~~Pt~~~~ 136 (189)
...||+.|++.-+.||+.|-..+=.|--...+|. ++.+.....+. .+ -..+|+++|.
T Consensus 55 ~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfG-n~~l~~~~S~~-------~d~~pn~Ptl~F~ 112 (249)
T PF06053_consen 55 APNGKPEVIFIGWEGCPYCAAESWALYIALSRFG-NFSLEYHYSDP-------YDNYPNTPTLIFN 112 (249)
T ss_pred CCCCeeEEEEEecccCccchhhHHHHHHHHHhcC-CeeeEEeecCc-------ccCCCCCCeEEEe
Confidence 4569999999999999999888766666666775 55433332222 11 2357887776
No 256
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=87.59 E-value=3 Score=28.55 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=19.0
Q ss_pred cHhHHHhCCCccccEEEEEeC
Q psy17832 118 MTDLAMDYQVSSVPVLIRMKD 138 (189)
Q Consensus 118 ~~~~~~~~~v~~~Pt~~~~~~ 138 (189)
++.+.++|+|+.+|++++.++
T Consensus 60 dP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 60 DPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred ChhHHhhCCceEcCEEEEEcC
Confidence 578899999999999999866
No 257
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=87.41 E-value=3.5 Score=27.80 Aligned_cols=57 Identities=18% Similarity=0.395 Sum_probs=38.8
Q ss_pred EecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCc--cccEEEEE-eCCe
Q psy17832 82 FFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVS--SVPVLIRM-KDGR 140 (189)
Q Consensus 82 f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~--~~Pt~~~~-~~G~ 140 (189)
||-.+|+-|......+.+. .-.+.+.|+.+.-....++...+++. ..-+.+.+ .+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~--d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR--DRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhc--CCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 7899999999998888776 11246777766445555556777765 34455554 7886
No 258
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=87.39 E-value=0.38 Score=31.08 Aligned_cols=54 Identities=22% Similarity=0.326 Sum_probs=44.0
Q ss_pred EecCCChhhhhhhHHHHHHHHHcc-CceEEEEEEcCccHhHHHhCCCccccEEEE
Q psy17832 82 FFAKWCDPCKLMAPCLEAIVERMN-GKVQLAKVDVDLMTDLAMDYQVSSVPVLIR 135 (189)
Q Consensus 82 f~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~ 135 (189)
|-+..-+..+.....++.+.+.+- +.+.+-.||+.++++++..++|-.+||++-
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLIK 57 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHHT
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEee
Confidence 445555667788888888888644 579999999999999999999999998653
No 259
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=86.90 E-value=7.7 Score=26.42 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=65.0
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHccC--ceEEEEEEcCccHhHH----HhCCCc-cccEEEEE--eCC-eeEEE
Q psy17832 75 STPVIVDFFAKWCDPCKLMAPCLEAIVERMNG--KVQLAKVDVDLMTDLA----MDYQVS-SVPVLIRM--KDG-REQDR 144 (189)
Q Consensus 75 ~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~~----~~~~v~-~~Pt~~~~--~~G-~~~~~ 144 (189)
+...++-|--.--+.-.++.+.+.++++.+.. ++.|+-||-|+.+-+. +.|+|. .-|.+=++ .+. .+-..
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~~ 99 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWME 99 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeEe
Confidence 56678888889999999999999999999875 5999999999988543 346664 24766666 222 23334
Q ss_pred EecCCc-CcHHHHHHHHHHhc
Q psy17832 145 FVGFQK-SNLEELEAFVTNAE 164 (189)
Q Consensus 145 ~~G~~~-~~~~~l~~~l~~~l 164 (189)
..+..+ .+.++|..||+..|
T Consensus 100 m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 100 MDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred cccccccCcHHHHHHHHHhhC
Confidence 444422 35589999998764
No 260
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=85.50 E-value=0.9 Score=33.89 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=27.4
Q ss_pred HhHHHhCCCccccEEEEEeCCeeEEEEecCCcCcHHHHHHHH
Q psy17832 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFV 160 (189)
Q Consensus 119 ~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~l~~~l 160 (189)
...+.++||.++||+++ +|+.+ ..|..+. +.|.+.|
T Consensus 165 ~~~a~~~gv~G~Pt~vv--~g~~~--~~G~~~~--~~~~~~i 200 (201)
T cd03024 165 EARARQLGISGVPFFVF--NGKYA--VSGAQPP--EVFLQAL 200 (201)
T ss_pred HHHHHHCCCCcCCEEEE--CCeEe--ecCCCCH--HHHHHHh
Confidence 35677899999999888 66543 5788887 7777665
No 261
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=84.76 E-value=4.7 Score=24.56 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=35.9
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCc----cHhHHHhCCCccccEEEEEeCCee
Q psy17832 80 VDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDL----MTDLAMDYQVSSVPVLIRMKDGRE 141 (189)
Q Consensus 80 v~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~----~~~~~~~~~v~~~Pt~~~~~~G~~ 141 (189)
..|+.++|+.|++.+-.++.. +-.+.+..+|... .+++.+......+|++.. +|..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~----gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~ 61 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKAL----GLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD--NGFV 61 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHc----CCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEE--CCEE
Confidence 357899999999877666553 2245555666432 245666556678999853 4543
No 262
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.37 E-value=5.6 Score=33.12 Aligned_cols=81 Identities=20% Similarity=0.318 Sum_probs=58.7
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeEEEEecCCcCcHH
Q psy17832 75 STPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLE 154 (189)
Q Consensus 75 ~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~ 154 (189)
+..-+=-|++-.|..|-.....|+-++- +..++.-..||-.-..+-...-+|.++||+++ +|+... .|.+.. +
T Consensus 116 g~~~FETy~SltC~nCPDVVQALN~msv-lNp~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe~fg--~GRmtl--e 188 (520)
T COG3634 116 GDFHFETYFSLTCHNCPDVVQALNLMSV-LNPRIKHTAIDGALFQDEVEARNIMAVPTVFL--NGEEFG--QGRMTL--E 188 (520)
T ss_pred CceeEEEEEEeeccCChHHHHHHHHHHh-cCCCceeEEecchhhHhHHHhccceecceEEE--cchhhc--ccceeH--H
Confidence 4556667788899999998888876654 44588888888777777677788999999877 776642 455544 6
Q ss_pred HHHHHHHH
Q psy17832 155 ELEAFVTN 162 (189)
Q Consensus 155 ~l~~~l~~ 162 (189)
+|...|..
T Consensus 189 eilaki~~ 196 (520)
T COG3634 189 EILAKIDT 196 (520)
T ss_pred HHHHHhcC
Confidence 66655544
No 263
>PRK12559 transcriptional regulator Spx; Provisional
Probab=84.06 E-value=2 Score=30.26 Aligned_cols=21 Identities=24% Similarity=0.505 Sum_probs=17.0
Q ss_pred EEEEecCCChhhhhhhHHHHH
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEA 99 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~ 99 (189)
+..|..++|+.|+.....|++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE 22 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 457889999999998766654
No 264
>KOG0852|consensus
Probab=83.36 E-value=16 Score=27.16 Aligned_cols=91 Identities=16% Similarity=0.196 Sum_probs=51.5
Q ss_pred CCCcEEEEEe-cCCChhhhhhhHHHHHHHHHccC---ceEEEEEEc--------------------------CccHhHHH
Q psy17832 74 ASTPVIVDFF-AKWCDPCKLMAPCLEAIVERMNG---KVQLAKVDV--------------------------DLMTDLAM 123 (189)
Q Consensus 74 ~~k~vvv~f~-a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~--------------------------d~~~~~~~ 123 (189)
.+|.|++.|| ..+--.|-.+.-.|-..+.+++. .|..+.+|. |.+.++++
T Consensus 32 ~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~Isr 111 (196)
T KOG0852|consen 32 KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISR 111 (196)
T ss_pred cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhHH
Confidence 4788999998 66666665655566665555554 344444442 45568999
Q ss_pred hCCCc----ccc--EEEEE-eCCeeEEEEecCCcC--cHHHHHHHHHHhc
Q psy17832 124 DYQVS----SVP--VLIRM-KDGREQDRFVGFQKS--NLEELEAFVTNAE 164 (189)
Q Consensus 124 ~~~v~----~~P--t~~~~-~~G~~~~~~~G~~~~--~~~~l~~~l~~~l 164 (189)
.|||- +++ .++++ .+|.+..-....... .-++....|+..-
T Consensus 112 dyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqAfQ 161 (196)
T KOG0852|consen 112 DYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQAFQ 161 (196)
T ss_pred hcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHHHh
Confidence 99974 555 33333 777654322222211 1255555555443
No 265
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=83.23 E-value=2.6 Score=28.82 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=22.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCc
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDL 117 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~ 117 (189)
+..|+.++|+.|++....|++. ++.|-.+|+.+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~ 34 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH------QIPFEERNLFK 34 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCceEEEecCC
Confidence 4467899999999988777652 34444555543
No 266
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=82.73 E-value=2 Score=31.66 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=24.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccC
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNG 106 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~ 106 (189)
|..|+.+.|++|-...+.|.++.++|+.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~ 30 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGG 30 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCC
Confidence 5678899999999999999999999843
No 267
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=80.98 E-value=2.6 Score=25.60 Aligned_cols=51 Identities=22% Similarity=0.102 Sum_probs=32.0
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCcc-HhHHHhCCCccccEEE
Q psy17832 80 VDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM-TDLAMDYQVSSVPVLI 134 (189)
Q Consensus 80 v~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-~~~~~~~~v~~~Pt~~ 134 (189)
..|+.++|+.|++.+-.++.. +-.+.+..+|.... +++.+......+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEK----GVSVEIIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHc----CCccEEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 357789999999988666543 22345555555433 3455555567889763
No 268
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=80.74 E-value=8.9 Score=24.62 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=35.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCcc-HhHHHhCCCccccEEEEEeCCee
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM-TDLAMDYQVSSVPVLIRMKDGRE 141 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-~~~~~~~~v~~~Pt~~~~~~G~~ 141 (189)
+..|+.+.|++|++.+-.++.. +-.+.+..++.... .++.+......+|.+.. .+|..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~----gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~-~~g~~ 77 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAK----NIPHEVININLKDKPDWFLEKNPQGKVPALEI-DEGKV 77 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHc----CCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEE-CCCCE
Confidence 3446788899999877665542 22466666666544 33555555678898764 22544
No 269
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=80.55 E-value=1.8 Score=31.87 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=24.4
Q ss_pred hHHHhCCCccccEEEEEeCCeeEEEEecCCcCcHHHHHHHH
Q psy17832 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFV 160 (189)
Q Consensus 120 ~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~l~~~l 160 (189)
..+.++||.++|++++ +|+. +.|.... +.+...|
T Consensus 158 ~~a~~~gi~gvPtfvv--~g~~---~~G~~~l--~~~~~~l 191 (192)
T cd03022 158 EEAIARGVFGVPTFVV--DGEM---FWGQDRL--DMLEEAL 191 (192)
T ss_pred HHHHHcCCCcCCeEEE--CCee---ecccccH--HHHHHHh
Confidence 4677899999999988 7753 4577666 5555443
No 270
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=79.27 E-value=3.8 Score=28.89 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=21.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcC
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVD 116 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d 116 (189)
+..|+.++|+.|+.....|++ . ++.|-.+|+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~----~--~i~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA----H--QLSYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH----c--CCCeEEEECC
Confidence 446789999999997766654 2 4445555553
No 271
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=78.75 E-value=30 Score=27.21 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=33.6
Q ss_pred CCcEEEEEecCC------ChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHh----CCCcc
Q psy17832 75 STPVIVDFFAKW------CDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMD----YQVSS 129 (189)
Q Consensus 75 ~k~vvv~f~a~w------C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~----~~v~~ 129 (189)
+++|-|.+|.+- -..=..+...|+++.+.-++++.+-.||.+..++..++ |||..
T Consensus 24 ~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~ 88 (271)
T PF09822_consen 24 DEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQP 88 (271)
T ss_pred CCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCc
Confidence 556766666554 33333444444444433344899999999777766655 88776
No 272
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=78.46 E-value=23 Score=25.87 Aligned_cols=87 Identities=17% Similarity=0.208 Sum_probs=49.9
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHH-ccC-ce-EEEEEEcCccH-----------------------------hH
Q psy17832 74 ASTPVIVDFFAKWCDPCKLMAPCLEAIVER-MNG-KV-QLAKVDVDLMT-----------------------------DL 121 (189)
Q Consensus 74 ~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~-~~~-~v-~~~~vd~d~~~-----------------------------~~ 121 (189)
.||+-+|...|-.-..=..-.|.++.+.+. ++. ++ ....||.|+.. .+
T Consensus 36 ~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~s~~vlD~~G~~ 115 (160)
T PF09695_consen 36 PGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPWSQFVLDSNGVV 115 (160)
T ss_pred CCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecccccccchHHHHHHHHHhhhhCCCcEEEEcCCCce
Confidence 477666655555555555555666666554 443 22 33345554321 22
Q ss_pred HHhCCCccc-cEEEEE-eCCeeEEEEecCCcCcHHHHHHHHHH
Q psy17832 122 AMDYQVSSV-PVLIRM-KDGREQDRFVGFQKSNLEELEAFVTN 162 (189)
Q Consensus 122 ~~~~~v~~~-Pt~~~~-~~G~~~~~~~G~~~~~~~~l~~~l~~ 162 (189)
...++...- -.++++ ++|++.....|..+. +++.+.|.-
T Consensus 116 ~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~--~Ev~qVi~L 156 (160)
T PF09695_consen 116 RKAWQLQEESSAIIVLDKQGKVQFVKEGALSP--AEVQQVIAL 156 (160)
T ss_pred eccccCCCCCceEEEEcCCccEEEEECCCCCH--HHHHHHHHH
Confidence 222332211 245555 999999999999988 777777653
No 273
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=77.96 E-value=9.9 Score=26.53 Aligned_cols=53 Identities=15% Similarity=0.236 Sum_probs=32.6
Q ss_pred ceEEEEEEcCccH----------hHHHhCCCccccEEEEEeCCeeEEEEecCCcCcHHHHHHHHHHhc
Q psy17832 107 KVQLAKVDVDLMT----------DLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTNAE 164 (189)
Q Consensus 107 ~v~~~~vd~d~~~----------~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~l~~~l~~~l 164 (189)
.+.+.+.++..++ ++.+.-|...+|.+++ +|+++... .+.+. ++|.+|+.--.
T Consensus 40 gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv~~G-~YPt~--eEl~~~~~i~~ 102 (123)
T PF06953_consen 40 GVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEIVKTG-RYPTN--EELAEWLGISF 102 (123)
T ss_dssp T-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEEEES-S---H--HHHHHHHT--G
T ss_pred CceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEEEec-CCCCH--HHHHHHhCCCc
Confidence 6889999988776 3455568899999888 99998643 22333 67887776444
No 274
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=76.31 E-value=9.5 Score=27.61 Aligned_cols=64 Identities=11% Similarity=0.129 Sum_probs=43.9
Q ss_pred CCCCCCCeEEecCHHHHHHHHHhCCCcEEE-EEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcC
Q psy17832 51 PAEAPSTSFQITDQKEFEAKVKQASTPVIV-DFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVD 116 (189)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~k~vvv-~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d 116 (189)
+..+++|++...|.+++... ...+|..+| .|=+-.=+-|-.....|++.+.++.+ +.++.|..|
T Consensus 21 Gd~ap~ftl~~~dL~~v~l~-~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~-~~Vl~IS~D 85 (158)
T COG2077 21 GDKAPDFTLVGKDLNDVSLA-DFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN-TVVLCISMD 85 (158)
T ss_pred CCcCCceEEEcCcccceecc-ccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC-cEEEEEeCC
Confidence 44567777777777776543 234555555 45577789999999999998888874 555556544
No 275
>KOG2244|consensus
Probab=74.97 E-value=8 Score=33.89 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=56.3
Q ss_pred ecCHHHHHHHHHhCCCcEEEEEecCCChhhhhhhHH-H--HHHHHHccCceEEEEEEcCccHhHHH--------hCCCcc
Q psy17832 61 ITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPC-L--EAIVERMNGKVQLAKVDVDLMTDLAM--------DYQVSS 129 (189)
Q Consensus 61 ~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~-l--~~l~~~~~~~v~~~~vd~d~~~~~~~--------~~~v~~ 129 (189)
-...+.|+.+ ...+|++++-.--+-|..|..+..+ | ++..+...++++-++||-++.+++-+ .+|-.+
T Consensus 99 pwgqeaf~ka-r~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GG 177 (786)
T KOG2244|consen 99 PWGQEAFNKA-RAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGG 177 (786)
T ss_pred cchHHHHHHH-HhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCC
Confidence 3344556655 7789999999999999999877654 2 33555555667777777777776544 456778
Q ss_pred ccEEEEE-eCCeeE
Q psy17832 130 VPVLIRM-KDGREQ 142 (189)
Q Consensus 130 ~Pt~~~~-~~G~~~ 142 (189)
+|.-+|+ .+=+++
T Consensus 178 WPmsV~LTPdL~Pl 191 (786)
T KOG2244|consen 178 WPMSVFLTPDLKPL 191 (786)
T ss_pred CceeEEeCCCcccc
Confidence 9988888 555543
No 276
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=73.71 E-value=24 Score=25.06 Aligned_cols=67 Identities=13% Similarity=0.198 Sum_probs=50.0
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccc-c-EEEEEeCCeeEE
Q psy17832 75 STPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSV-P-VLIRMKDGREQD 143 (189)
Q Consensus 75 ~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~-P-t~~~~~~G~~~~ 143 (189)
+++-.|.+|..-|+-|-...-.|.+. .-++.+.|+.+..+....+...+++..- + +++++++|+...
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~--D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~ 74 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRR--DQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLV 74 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHh--ccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEe
Confidence 56677889999999999976666443 2345799999998888888888887643 3 566668887653
No 277
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=73.14 E-value=6.7 Score=29.82 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=25.1
Q ss_pred cHhHHHhCCCccccEEEEEeCCeeEEEEecCCcC
Q psy17832 118 MTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKS 151 (189)
Q Consensus 118 ~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~ 151 (189)
++.+.++|+|+.+|++++.... -..++.|..+.
T Consensus 151 DP~lF~~F~I~~VPafVv~C~~-~yD~I~GNIsl 183 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCSQ-GYDIIRGNLRV 183 (212)
T ss_pred CHHHHHhcCCccccEEEEEcCC-CCCEEEecccH
Confidence 5788999999999999998432 34566676554
No 278
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=71.85 E-value=25 Score=23.03 Aligned_cols=69 Identities=17% Similarity=0.246 Sum_probs=42.3
Q ss_pred cCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHh-CCCccccEEEEEeCCeeEEEEecCCcCcHHHHHHHHHH
Q psy17832 84 AKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMD-YQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTN 162 (189)
Q Consensus 84 a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~-~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~l~~~l~~ 162 (189)
..+|++|++.+=.|... .-.+.+..||....++...+ .-...+|++. .+|.++. +. ..|.++|++
T Consensus 19 ~g~cpf~~rvrl~L~eK----gi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~i~------eS--~~I~eYLde 84 (91)
T cd03061 19 IGNCPFCQRLFMVLWLK----GVVFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEVKT------DN--NKIEEFLEE 84 (91)
T ss_pred CCCChhHHHHHHHHHHC----CCceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEEec------CH--HHHHHHHHH
Confidence 36799999987666442 22566677777665544444 4466789554 3554441 22 577788877
Q ss_pred hcCC
Q psy17832 163 AEKP 166 (189)
Q Consensus 163 ~l~~ 166 (189)
....
T Consensus 85 ~~~~ 88 (91)
T cd03061 85 TLCP 88 (91)
T ss_pred HccC
Confidence 6543
No 279
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=71.11 E-value=13 Score=29.04 Aligned_cols=85 Identities=16% Similarity=0.222 Sum_probs=55.6
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHccCceEEEE--EEc----------------CccHhHHHhCCCccccEEEEEeCC
Q psy17832 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAK--VDV----------------DLMTDLAMDYQVSSVPVLIRMKDG 139 (189)
Q Consensus 78 vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~--vd~----------------d~~~~~~~~~~v~~~Pt~~~~~~G 139 (189)
||=.|.+-.|..|--....|.+++++ +++.-+. ||+ +......+.|+.++++|=-.|-+|
T Consensus 44 VVELfTSQGCsSCPPAd~~l~k~a~~--~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvnG 121 (261)
T COG5429 44 VVELFTSQGCSSCPPADANLAKLADD--PGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVNG 121 (261)
T ss_pred EEEEeecCCcCCCChHHHHHHHhccC--CCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheeec
Confidence 44467788999999988899888764 3444433 343 123356677888888777777688
Q ss_pred eeEEEEecCCcCcHHHHHHHHHHhcCCCCC
Q psy17832 140 REQDRFVGFQKSNLEELEAFVTNAEKPAET 169 (189)
Q Consensus 140 ~~~~~~~G~~~~~~~~l~~~l~~~l~~~~~ 169 (189)
+... .|... ..|...|...-+....
T Consensus 122 r~~~--~Gad~---~~i~~~i~a~~~~g~g 146 (261)
T COG5429 122 RVHA--NGADP---GAIEDAIAAMARRGAG 146 (261)
T ss_pred hhhh--cCCCH---HHHHHHHHHhhccccc
Confidence 7653 34433 5778888777655443
No 280
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=69.10 E-value=8.8 Score=23.08 Aligned_cols=56 Identities=20% Similarity=0.147 Sum_probs=34.1
Q ss_pred EEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCc----cHhHHHhCCCccccEEEEEeCCeeE
Q psy17832 81 DFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDL----MTDLAMDYQVSSVPVLIRMKDGREQ 142 (189)
Q Consensus 81 ~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~----~~~~~~~~~v~~~Pt~~~~~~G~~~ 142 (189)
.|+.++|+.|++.+-.+... +-.+....++... ..++.+......+|++.. +|..+
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~i 62 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALL----GIPYEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRVL 62 (73)
T ss_pred EEeCCCCccHHHHHHHHHHc----CCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEEE
Confidence 47788999999887666543 2245555565432 234444444567898864 46543
No 281
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=62.29 E-value=11 Score=31.12 Aligned_cols=78 Identities=15% Similarity=0.095 Sum_probs=43.4
Q ss_pred cCCChhhhhh-hHHHHHHHHHccC---ceEEEEEEcC-cc--HhHHHhCCCcccc-EEEEEeCCeeEEEEecCCcCcHHH
Q psy17832 84 AKWCDPCKLM-APCLEAIVERMNG---KVQLAKVDVD-LM--TDLAMDYQVSSVP-VLIRMKDGREQDRFVGFQKSNLEE 155 (189)
Q Consensus 84 a~wC~~C~~~-~p~l~~l~~~~~~---~v~~~~vd~d-~~--~~~~~~~~v~~~P-t~~~~~~G~~~~~~~G~~~~~~~~ 155 (189)
-|.|+.|+.- .....++.+.|.+ .+.+..+-|- .. ..--..+||.+-+ ..++|.+|+++.++.+..-. +.
T Consensus 271 CPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~--~~ 348 (360)
T PRK00366 271 CPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIV--EE 348 (360)
T ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHH--HH
Confidence 3446666433 2333445555554 2555555552 11 2334667877554 67777999999887664433 45
Q ss_pred HHHHHHHh
Q psy17832 156 LEAFVTNA 163 (189)
Q Consensus 156 l~~~l~~~ 163 (189)
|.+.|+++
T Consensus 349 l~~~i~~~ 356 (360)
T PRK00366 349 LEAEIEAY 356 (360)
T ss_pred HHHHHHHH
Confidence 55555544
No 282
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=60.98 E-value=9.4 Score=28.04 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=17.2
Q ss_pred hHHHhCCCccccEEEEEeCCe
Q psy17832 120 DLAMDYQVSSVPVLIRMKDGR 140 (189)
Q Consensus 120 ~~~~~~~v~~~Pt~~~~~~G~ 140 (189)
..+.++||.++||+++..++.
T Consensus 160 ~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 160 KLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHcCCCccCEEEEEeCCe
Confidence 466789999999999996554
No 283
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=60.58 E-value=12 Score=30.65 Aligned_cols=44 Identities=16% Similarity=0.119 Sum_probs=33.5
Q ss_pred HhCCCcc--ccEEEEEeCCeeEEEEecCCcCcHHHHHHHHHHhcCCCC
Q psy17832 123 MDYQVSS--VPVLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEKPAE 168 (189)
Q Consensus 123 ~~~~v~~--~Pt~~~~~~G~~~~~~~G~~~~~~~~l~~~l~~~l~~~~ 168 (189)
..+||.+ -|...+|.+|+.+.+..+..-. ++|...|++..++..
T Consensus 310 AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~--eel~~~i~~~~~~~~ 355 (361)
T COG0821 310 ADIGIAGGGKGSGPVFVKGEIIKKLPEEDIV--EELEALIEAYAEERD 355 (361)
T ss_pred cceeeecCCCCeeEEEECCeEEEecChhhHH--HHHHHHHHHHHHHhh
Confidence 4567653 5888999999999998887777 788888887765543
No 284
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=59.77 E-value=47 Score=21.81 Aligned_cols=68 Identities=13% Similarity=0.233 Sum_probs=38.4
Q ss_pred Chhhhhh------hHHHHH-HHHHccCc-eEEEEEEcCccH------hHHHhC--CCccccEEEEEeCCeeEEEEecCCc
Q psy17832 87 CDPCKLM------APCLEA-IVERMNGK-VQLAKVDVDLMT------DLAMDY--QVSSVPVLIRMKDGREQDRFVGFQK 150 (189)
Q Consensus 87 C~~C~~~------~p~l~~-l~~~~~~~-v~~~~vd~d~~~------~~~~~~--~v~~~Pt~~~~~~G~~~~~~~G~~~ 150 (189)
|..|..+ ...|+. +.++|++. +.|-.||+...+ +++.+. .--.+|.+++ +|+++. .|...
T Consensus 9 CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i--~~eiV~--EGnp~ 84 (93)
T PF07315_consen 9 CASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVI--NDEIVA--EGNPQ 84 (93)
T ss_dssp -GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEE--TTEEEE--ESS--
T ss_pred chhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEE--CCEEEe--cCCcc
Confidence 8888653 333433 67799875 999999986544 334332 1236898887 898875 45544
Q ss_pred CcHHHHHHHH
Q psy17832 151 SNLEELEAFV 160 (189)
Q Consensus 151 ~~~~~l~~~l 160 (189)
. ..+-++|
T Consensus 85 L--K~I~~~~ 92 (93)
T PF07315_consen 85 L--KDIYEEM 92 (93)
T ss_dssp H--HHHHHHH
T ss_pred H--HHHHHhh
Confidence 4 5555544
No 285
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=57.91 E-value=11 Score=28.40 Aligned_cols=38 Identities=26% Similarity=0.573 Sum_probs=24.1
Q ss_pred hHHHhCCCccccEEEEEeC-CeeEEEEecCCcCcHHHHHHHH
Q psy17832 120 DLAMDYQVSSVPVLIRMKD-GREQDRFVGFQKSNLEELEAFV 160 (189)
Q Consensus 120 ~~~~~~~v~~~Pt~~~~~~-G~~~~~~~G~~~~~~~~l~~~l 160 (189)
+.+.+.||.++|++++-.+ |. -..+-|.... +.+.++|
T Consensus 170 ~~A~~~Gv~GVP~fvv~~~~~~-~e~fwG~Drl--~~~~~~l 208 (209)
T cd03021 170 DEALKYGAFGLPWIVVTNDKGK-TEMFFGSDRF--EQVADFL 208 (209)
T ss_pred HHHHHcCCCCCCEEEEEcCCCC-ccceecCCcH--HHHHHHh
Confidence 3456679999999988642 42 2345676665 5555443
No 286
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=57.49 E-value=83 Score=23.93 Aligned_cols=77 Identities=23% Similarity=0.361 Sum_probs=48.2
Q ss_pred EEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCc------------------cHhHHHhCCCc--cccEEEEEeCCe
Q psy17832 81 DFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDL------------------MTDLAMDYQVS--SVPVLIRMKDGR 140 (189)
Q Consensus 81 ~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~------------------~~~~~~~~~v~--~~Pt~~~~~~G~ 140 (189)
.|.+-.|+.|--....|.+|.++ + ++..+...+|- .......++.+ .+|-+++ +|+
T Consensus 4 LFTSQGCsSCPpAD~~L~~l~~~-~-~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV--nG~ 79 (202)
T PF06764_consen 4 LFTSQGCSSCPPADRLLSELAAR-P-DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV--NGR 79 (202)
T ss_dssp EEE-TT-TT-HHHHHHHHHHHHH-T-SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--TTT
T ss_pred EecCCCCCCCcHHHHHHHHhhcC-C-CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--CCe
Confidence 57788999999999999999888 3 66655555432 12345556654 4688777 887
Q ss_pred eEEEEecCCcCcHHHHHHHHHHhcCC
Q psy17832 141 EQDRFVGFQKSNLEELEAFVTNAEKP 166 (189)
Q Consensus 141 ~~~~~~G~~~~~~~~l~~~l~~~l~~ 166 (189)
.- ..|... ..+...|.+....
T Consensus 80 ~~--~~g~~~---~~~~~ai~~~~~~ 100 (202)
T PF06764_consen 80 EH--RVGSDR---AAVEAAIQAARAR 100 (202)
T ss_dssp EE--EETT-H---HHHHHHHHHHHHT
T ss_pred ee--eeccCH---HHHHHHHHHhhcc
Confidence 65 345433 5788888877655
No 287
>KOG1364|consensus
Probab=56.48 E-value=24 Score=29.11 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=44.3
Q ss_pred eEEEEEEcCccHhHHHhCCCccccEEEEE--eCCeeEEEEecCCcCcHHHHHHHHHHhcCC
Q psy17832 108 VQLAKVDVDLMTDLAMDYQVSSVPVLIRM--KDGREQDRFVGFQKSNLEELEAFVTNAEKP 166 (189)
Q Consensus 108 v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~--~~G~~~~~~~G~~~~~~~~l~~~l~~~l~~ 166 (189)
+..+..|..+...+..-|.+..+|.+.++ .-|+.+.+..|.... ++|..-+.+.+..
T Consensus 133 wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~--~~fl~~l~~Fi~~ 191 (356)
T KOG1364|consen 133 WLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEP--EQFLSDLNEFIDS 191 (356)
T ss_pred EEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCH--HHHHHHHHHHHhc
Confidence 44445556666778888999999988888 689999999888887 7887777777653
No 288
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=55.94 E-value=45 Score=20.38 Aligned_cols=57 Identities=14% Similarity=0.028 Sum_probs=35.4
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCc----cHhHHHhCCCccccEEEEEeCCeeE
Q psy17832 80 VDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDL----MTDLAMDYQVSSVPVLIRMKDGREQ 142 (189)
Q Consensus 80 v~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~----~~~~~~~~~v~~~Pt~~~~~~G~~~ 142 (189)
..|+.+.|+.|++.+-.+.+. +-.+.+..+|... .+++.+.-....+|++. .+|..+
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~----gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~l 62 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEK----GLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNII 62 (73)
T ss_pred EEecCCCCccHHHHHHHHHHc----CCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEEE
Confidence 357788999998877544432 3356666676532 23455555567789885 366543
No 289
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=55.53 E-value=29 Score=26.43 Aligned_cols=40 Identities=15% Similarity=0.439 Sum_probs=27.9
Q ss_pred HHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeE
Q psy17832 97 LEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQ 142 (189)
Q Consensus 97 l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~ 142 (189)
+.++.++++..+.| |....+.++|+|..+|+++. .+|+.+
T Consensus 158 ~~~l~~~l~~~vYf-----dQ~g~Lt~rF~I~~VPavV~-q~g~~l 197 (202)
T TIGR02743 158 VNELEKRLDSRIYF-----DQHGKLTQKFGIKHVPARVS-QEGLRL 197 (202)
T ss_pred HHHHHHHhCCceEE-----cCCchHhhccCceeeceEEE-ecCCEE
Confidence 44555666544443 66778999999999999775 566554
No 290
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=52.66 E-value=18 Score=24.62 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=16.4
Q ss_pred EEEEecCCChhhhhhhHHHHH
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEA 99 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~ 99 (189)
+..|..+.|+.|++....|++
T Consensus 2 i~iy~~p~C~~crkA~~~L~~ 22 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEA 22 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 346889999999998766654
No 291
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=51.76 E-value=37 Score=23.01 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=16.5
Q ss_pred EEEecCCChhhhhhhHHHHH
Q psy17832 80 VDFFAKWCDPCKLMAPCLEA 99 (189)
Q Consensus 80 v~f~a~wC~~C~~~~p~l~~ 99 (189)
..|+.+.|..|++....|++
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~ 21 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLED 21 (114)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 46789999999998877765
No 292
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=50.06 E-value=1.2e+02 Score=23.38 Aligned_cols=93 Identities=17% Similarity=0.342 Sum_probs=52.5
Q ss_pred CeEEecCHH-HHHHHHHhCCCcEEEEEe-----cCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCc------------
Q psy17832 57 TSFQITDQK-EFEAKVKQASTPVIVDFF-----AKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDL------------ 117 (189)
Q Consensus 57 ~~~~~~~~~-~~~~~~~~~~k~vvv~f~-----a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~------------ 117 (189)
.+++..++. .+..+...+..++|..|- ...|+-|-.+...+.....-+.. ++.|+.|.-..
T Consensus 49 Y~F~g~~G~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmG 128 (211)
T PF05988_consen 49 YVFDGPDGPVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMG 128 (211)
T ss_pred eEEeCCCCcccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcC
Confidence 344443333 233332334555555554 45699999999999554444444 58888887422
Q ss_pred ---------cHhHHHhCCC-----ccccEEEEE-eCC-eeEEEEecCC
Q psy17832 118 ---------MTDLAMDYQV-----SSVPVLIRM-KDG-REQDRFVGFQ 149 (189)
Q Consensus 118 ---------~~~~~~~~~v-----~~~Pt~~~~-~~G-~~~~~~~G~~ 149 (189)
..++...|++ ...|.+-+| ++| ++...+.-..
T Consensus 129 W~~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~VfhTyst~~ 176 (211)
T PF05988_consen 129 WTFPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDGGRVFHTYSTYG 176 (211)
T ss_pred CCceEEEcCCCcccccccceeccCCCceeEEEEEEcCCEEEEEeecCC
Confidence 2245555666 457766666 554 5555554433
No 293
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=48.77 E-value=1.2e+02 Score=23.46 Aligned_cols=73 Identities=29% Similarity=0.381 Sum_probs=48.8
Q ss_pred EEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeEEEEecCCcCcHHHHHHHH
Q psy17832 81 DFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFV 160 (189)
Q Consensus 81 ~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~l~~~l 160 (189)
.|.-..|..|-.+...|+. +.+-+++.| ++....+.+.-+-+|-++|.+++ +|+++. -+..+. +.|+..|
T Consensus 15 I~~HktC~ssy~Lf~~L~n--kgll~~Vki--i~a~~p~f~~~~~~V~SvP~Vf~--DGel~~--~dpVdp--~~ies~~ 84 (265)
T COG5494 15 IFTHKTCVSSYMLFEYLEN--KGLLGKVKI--IDAELPPFLAFEKGVISVPSVFI--DGELVY--ADPVDP--EEIESIL 84 (265)
T ss_pred EEEecchHHHHHHHHHHHh--cCCCCCceE--EEcCCChHHHhhcceeecceEEE--cCeEEE--cCCCCH--HHHHHHH
Confidence 4567789999887766653 122245665 45666666666667999998766 898873 355555 7777777
Q ss_pred HHh
Q psy17832 161 TNA 163 (189)
Q Consensus 161 ~~~ 163 (189)
...
T Consensus 85 ~G~ 87 (265)
T COG5494 85 SGQ 87 (265)
T ss_pred cCc
Confidence 654
No 294
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=47.88 E-value=29 Score=22.06 Aligned_cols=35 Identities=29% Similarity=0.550 Sum_probs=20.3
Q ss_pred cccEEEEE-eCCeeEEEEecCCcCcHHHHHHHHHHhc
Q psy17832 129 SVPVLIRM-KDGREQDRFVGFQKSNLEELEAFVTNAE 164 (189)
Q Consensus 129 ~~Pt~~~~-~~G~~~~~~~G~~~~~~~~l~~~l~~~l 164 (189)
.-|+++++ .+|+++.++. ....+.+.+.++|.+.+
T Consensus 41 ~~P~L~l~d~~g~~~E~i~-i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERIN-IEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE--SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEE-cccCCHHHHHHHHHHhC
Confidence 35899998 7998877652 22333468999888754
No 295
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=47.79 E-value=28 Score=22.34 Aligned_cols=75 Identities=17% Similarity=0.298 Sum_probs=38.1
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeEEEEecCCcCcHHHHH
Q psy17832 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELE 157 (189)
Q Consensus 78 vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~l~ 157 (189)
.+.+.-++.+-.|.- .|.+++..++ ++ ..+-+..+.+.-++. ..-.++.+|..|+++ ..|..+. +++.
T Consensus 5 ~i~NIva~~~l~~~i---dL~~la~~~~-~~---~YePe~fpgl~~r~~-~p~~t~~IF~sGki~--itGaks~--~~~~ 72 (86)
T PF00352_consen 5 KIVNIVASFDLPFEI---DLEELAEELE-NV---EYEPERFPGLIYRLR-NPKATVLIFSSGKIV--ITGAKSE--EEAK 72 (86)
T ss_dssp EEEEEEEEEE-SSEB----HHHHHHHST-TE---EEETTTESSEEEEET-TTTEEEEEETTSEEE--EEEESSH--HHHH
T ss_pred EEEEEEEEEECCCcc---CHHHHHhhcc-Cc---EEeeccCCeEEEeec-CCcEEEEEEcCCEEE--EEecCCH--HHHH
Confidence 344555555666654 4555555552 22 112222221111111 113588888999987 4677666 6777
Q ss_pred HHHHHhc
Q psy17832 158 AFVTNAE 164 (189)
Q Consensus 158 ~~l~~~l 164 (189)
..+++++
T Consensus 73 ~a~~~i~ 79 (86)
T PF00352_consen 73 KAIEKIL 79 (86)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 296
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=46.37 E-value=19 Score=29.90 Aligned_cols=75 Identities=15% Similarity=0.198 Sum_probs=38.4
Q ss_pred ChhhhhhhHHHHHHHHHc----c---CceEEEEEEcCccH--h-HHHhCCCc-ccc-EEEEEeCCeeEEEE-ecCCcCcH
Q psy17832 87 CDPCKLMAPCLEAIVERM----N---GKVQLAKVDVDLMT--D-LAMDYQVS-SVP-VLIRMKDGREQDRF-VGFQKSNL 153 (189)
Q Consensus 87 C~~C~~~~p~l~~l~~~~----~---~~v~~~~vd~d~~~--~-~~~~~~v~-~~P-t~~~~~~G~~~~~~-~G~~~~~~ 153 (189)
||.|-+..-.++++.++. . ..+.++.+-|--+. + --..||+. +-+ ...+|++|+++.+. ....-.
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~v-- 348 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIV-- 348 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHH--
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHH--
Confidence 666655444555544433 2 24777777664332 1 12346665 434 47888999999887 554444
Q ss_pred HHHHHHHHHh
Q psy17832 154 EELEAFVTNA 163 (189)
Q Consensus 154 ~~l~~~l~~~ 163 (189)
+.|.+.|++.
T Consensus 349 d~L~~~I~~~ 358 (359)
T PF04551_consen 349 DELIELIEEH 358 (359)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 6666666553
No 297
>KOG4079|consensus
Probab=46.01 E-value=20 Score=25.40 Aligned_cols=39 Identities=26% Similarity=0.227 Sum_probs=26.0
Q ss_pred ccccEEEEE-eCCeeEEEEecCCcCcHHHHHHHHHHhcCCCC
Q psy17832 128 SSVPVLIRM-KDGREQDRFVGFQKSNLEELEAFVTNAEKPAE 168 (189)
Q Consensus 128 ~~~Pt~~~~-~~G~~~~~~~G~~~~~~~~l~~~l~~~l~~~~ 168 (189)
.-.|...+| .+|+.+-.-...... ++|++.|.+.|++..
T Consensus 72 tpsPF~R~YlddGr~vL~Dld~~~r--~eI~~hl~K~lGKte 111 (169)
T KOG4079|consen 72 TPSPFARAYLDDGREVLFDLDGMKR--EEIEKHLAKTLGKTE 111 (169)
T ss_pred CCChHHHheecCcceEEEEcccccH--HHHHHHHHHHhCccH
Confidence 345666666 788766433333344 799999999987665
No 298
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=45.39 E-value=83 Score=23.51 Aligned_cols=62 Identities=19% Similarity=0.115 Sum_probs=38.0
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCcc-HhHHHhCCCccccEEEEEeCCeeE
Q psy17832 75 STPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM-TDLAMDYQVSSVPVLIRMKDGREQ 142 (189)
Q Consensus 75 ~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-~~~~~~~~v~~~Pt~~~~~~G~~~ 142 (189)
+...+..|+.++|+.|+...=.|++. +-.+.+..||.... +++.+..-...+|+++. +|..+
T Consensus 7 ~~~~~~Ly~~~~s~~~~rv~~~L~e~----gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~--~g~~l 69 (211)
T PRK09481 7 KRSVMTLFSGPTDIYSHQVRIVLAEK----GVSVEIEQVEKDNLPQDLIDLNPYQSVPTLVD--RELTL 69 (211)
T ss_pred CCCeeEEeCCCCChhHHHHHHHHHHC----CCCCEEEeCCcccCCHHHHHhCCCCCCCEEEE--CCEEe
Confidence 33345556677899999988665543 23466667776543 34545444567899853 55443
No 299
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=44.94 E-value=92 Score=25.75 Aligned_cols=66 Identities=12% Similarity=0.130 Sum_probs=34.7
Q ss_pred EecCCChhhhh-hhHHHHHHHHHcc---CceEEEEEEcCcc--H-hHHHhCCCccc--cEEEEEeCCeeEEEEec
Q psy17832 82 FFAKWCDPCKL-MAPCLEAIVERMN---GKVQLAKVDVDLM--T-DLAMDYQVSSV--PVLIRMKDGREQDRFVG 147 (189)
Q Consensus 82 f~a~wC~~C~~-~~p~l~~l~~~~~---~~v~~~~vd~d~~--~-~~~~~~~v~~~--Pt~~~~~~G~~~~~~~G 147 (189)
..-|.|+.|.- +....+++.+.+. ..+.++.+-|--+ . .--..+||.+- -..++|++|+++.+..+
T Consensus 260 iSCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~kv~~ 334 (346)
T TIGR00612 260 VACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAKQPE 334 (346)
T ss_pred EECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEecCH
Confidence 34566666643 2233333433333 3466665554322 1 12245676643 35777899999876644
No 300
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=44.76 E-value=39 Score=24.96 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=21.8
Q ss_pred EEEEEeCCeeEEEEecCCcCcHHHHHHHHHHhc
Q psy17832 132 VLIRMKDGREQDRFVGFQKSNLEELEAFVTNAE 164 (189)
Q Consensus 132 t~~~~~~G~~~~~~~G~~~~~~~~l~~~l~~~l 164 (189)
|+++|..|+++ +.|..+. +++...++.++
T Consensus 141 t~lIF~sGkvv--itGaks~--~~~~~a~~~i~ 169 (174)
T cd00652 141 VLLIFVSGKIV--ITGAKSR--EDIYEAVEKIY 169 (174)
T ss_pred EEEEEcCCEEE--EEecCCH--HHHHHHHHHHH
Confidence 66777999987 5788877 77777776654
No 301
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=43.59 E-value=66 Score=24.64 Aligned_cols=40 Identities=15% Similarity=0.314 Sum_probs=27.8
Q ss_pred HHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEE-eCCeeE
Q psy17832 98 EAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRM-KDGREQ 142 (189)
Q Consensus 98 ~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~-~~G~~~ 142 (189)
.++.++++..+.| |+...+.++|+|..+|+++.- .+|+.+
T Consensus 157 ~~~~~~l~~~vYf-----dQ~G~Lt~rF~I~~VPAvV~~~q~G~~l 197 (209)
T PRK13738 157 PEMSKALDSRIYF-----DQNGVLCQRFGIDQVPARVSAVPGGRFL 197 (209)
T ss_pred HHHHHHhCCceEE-----cCcchHHHhcCCeeeceEEEEcCCCCEE
Confidence 4444555434443 666779999999999998863 677654
No 302
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=41.78 E-value=52 Score=23.92 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=26.0
Q ss_pred EEecCCChhhhhhhHHHHHHHHHccCceEEEEE
Q psy17832 81 DFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKV 113 (189)
Q Consensus 81 ~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v 113 (189)
.|+..-||+|-...+.|+++...++-.+.+.-+
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~ 35 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHGATVRYRPI 35 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhCCeeEEeee
Confidence 456778999999999999999888655555444
No 303
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=41.00 E-value=40 Score=21.79 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=22.1
Q ss_pred EecCC---Chhh--hhhh---HHHHHHHHHccCc-eEEEEEEcC
Q psy17832 82 FFAKW---CDPC--KLMA---PCLEAIVERMNGK-VQLAKVDVD 116 (189)
Q Consensus 82 f~a~w---C~~C--~~~~---p~l~~l~~~~~~~-v~~~~vd~d 116 (189)
||.-| |..| .... .+|++-.++|++. |.++.+|-.
T Consensus 28 ywt~w~lp~f~~~~~~~~~Vl~el~~c~~~~p~~YVRlig~D~~ 71 (84)
T cd00307 28 FRTSSWQSCGPIEGRSEAQVLAALEACLAEHPGEYVRLIGIDPK 71 (84)
T ss_pred cHhhhcCCCCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCC
Confidence 55555 6777 5444 4455556678764 788888854
No 304
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=40.96 E-value=37 Score=23.34 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=17.4
Q ss_pred EEEEecCCChhhhhhhHHHHH
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEA 99 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~ 99 (189)
+..|+.+.|..|+.....|++
T Consensus 3 itiy~~p~C~t~rka~~~L~~ 23 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEE 23 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 556889999999998877765
No 305
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=40.90 E-value=81 Score=18.94 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=33.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcC----ccHhHHHhCCCccccEEEEEeCCee
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVD----LMTDLAMDYQVSSVPVLIRMKDGRE 141 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d----~~~~~~~~~~v~~~Pt~~~~~~G~~ 141 (189)
+..|+.+.|+.|++.+-.+.... -.+.+..++.. ..+++.+......+|++.. +|..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~----i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~--~g~~ 62 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKG----VDYELVPVDLTKGEHKSPEHLARNPFGQIPALED--GDLK 62 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcC----CCcEEEEeCccccccCCHHHHhhCCCCCCCEEEE--CCEE
Confidence 34455677999998876665432 23555555543 1245555556678997643 5543
No 306
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=39.52 E-value=1.9e+02 Score=22.82 Aligned_cols=106 Identities=17% Similarity=0.203 Sum_probs=57.3
Q ss_pred CCCCeEEecCHHHHHHHHHhCCCcEEE-EEecCCChhhhhh--hHHHHHHHHHccCceEEEEEEcCcc------------
Q psy17832 54 APSTSFQITDQKEFEAKVKQASTPVIV-DFFAKWCDPCKLM--APCLEAIVERMNGKVQLAKVDVDLM------------ 118 (189)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~k~vvv-~f~a~wC~~C~~~--~p~l~~l~~~~~~~v~~~~vd~d~~------------ 118 (189)
.|.+....++++..+..-...+++.|| .|+..|-..|..- .|.++++...-.+.+.++.|++.++
T Consensus 101 FP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~~~~~~~~q~v~In~~e~~~k~~l~~~~~~ 180 (252)
T PF05176_consen 101 FPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTSPFLEDFLQEPYGRVQIVEINLIENWLKSWLVKLFMG 180 (252)
T ss_pred CCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhhHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhh
Confidence 444444555544222110124666666 4556665555332 2344444443333788888886332
Q ss_pred -----------------------HhHHHhCCCcccc--EEEEE-eCCeeEEEEecCCcCcHHHHHHHHH
Q psy17832 119 -----------------------TDLAMDYQVSSVP--VLIRM-KDGREQDRFVGFQKSNLEELEAFVT 161 (189)
Q Consensus 119 -----------------------~~~~~~~~v~~~P--t~~~~-~~G~~~~~~~G~~~~~~~~l~~~l~ 161 (189)
.++-+.+++.-.= -++++ .+|++...-.|..+. +++..+..
T Consensus 181 ~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG~At~--~E~~~L~k 247 (252)
T PF05176_consen 181 SLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAGSGPATP--EELESLWK 247 (252)
T ss_pred hhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCccCCCCH--HHHHHHHH
Confidence 2456677775433 23333 789998777777766 77766544
No 307
>KOG0406|consensus
Probab=38.06 E-value=1.1e+02 Score=23.76 Aligned_cols=59 Identities=17% Similarity=0.308 Sum_probs=37.9
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcCccHhHHHhCC-Cc-cccEEEEEeCCeeE
Q psy17832 75 STPVIVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDLMTDLAMDYQ-VS-SVPVLIRMKDGREQ 142 (189)
Q Consensus 75 ~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~-v~-~~Pt~~~~~~G~~~ 142 (189)
+.+.++.+|+ |+.-++.. ++-+.++ .+.++.+|....+++.-+.+ ++ .+|.++. +|+.+
T Consensus 8 ~~vrL~~~w~--sPfa~R~~-----iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~H--n~k~i 69 (231)
T KOG0406|consen 8 GTVKLLGMWF--SPFAQRVR-----IALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEH--NGKPI 69 (231)
T ss_pred CeEEEEEeec--ChHHHHHH-----HHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEE--CCcee
Confidence 3344444443 88887765 3333444 58888899886777776666 65 5887655 77764
No 308
>KOG1371|consensus
Probab=37.97 E-value=1.9e+02 Score=23.95 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=47.5
Q ss_pred HHHHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHcc--CceEEEEEEcCccHhHHHhCCCccccEEEEE
Q psy17832 66 EFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMN--GKVQLAKVDVDLMTDLAMDYQVSSVPVLIRM 136 (189)
Q Consensus 66 ~~~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 136 (189)
..-+++.....+++|+=+...+ .+.+.++++-.. ..+.|..+|+.+...|.+-|....+=.++.|
T Consensus 18 t~l~L~~~gy~v~~vDNl~n~~------~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V~Hf 84 (343)
T KOG1371|consen 18 TVLALLKRGYGVVIVDNLNNSY------LESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAVMHF 84 (343)
T ss_pred HHHHHHhCCCcEEEEecccccc------hhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceEEee
Confidence 3344445566777776554444 667777776666 5799999999999999999988887777777
No 309
>COG3411 Ferredoxin [Energy production and conversion]
Probab=37.59 E-value=97 Score=18.93 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=24.9
Q ss_pred ccEEEEEeCCeeEEEEecCCcCcHHHHHHHHHHhcCCCCCC
Q psy17832 130 VPVLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEKPAETS 170 (189)
Q Consensus 130 ~Pt~~~~~~G~~~~~~~G~~~~~~~~l~~~l~~~l~~~~~~ 170 (189)
=|++++|.+|- +-+..+. +...+++++++......
T Consensus 17 gPvl~vYpegv----WY~~V~p--~~a~rIv~~hl~~Gr~V 51 (64)
T COG3411 17 GPVLVVYPEGV----WYTRVDP--EDARRIVQSHLLGGRPV 51 (64)
T ss_pred CCEEEEecCCe----eEeccCH--HHHHHHHHHHHhCCCcc
Confidence 48899999982 2234445 78899999998765544
No 310
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=37.34 E-value=12 Score=26.56 Aligned_cols=13 Identities=31% Similarity=0.762 Sum_probs=11.5
Q ss_pred CChhhhhhhHHHH
Q psy17832 86 WCDPCKLMAPCLE 98 (189)
Q Consensus 86 wC~~C~~~~p~l~ 98 (189)
-|++|++..|.|-
T Consensus 11 ~CPhCRQ~ipALt 23 (163)
T TIGR02652 11 RCPHCRQNIPALT 23 (163)
T ss_pred cCchhhcccchhe
Confidence 5999999999984
No 311
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=37.33 E-value=12 Score=26.56 Aligned_cols=13 Identities=31% Similarity=0.774 Sum_probs=11.5
Q ss_pred CChhhhhhhHHHH
Q psy17832 86 WCDPCKLMAPCLE 98 (189)
Q Consensus 86 wC~~C~~~~p~l~ 98 (189)
-|++|++..|.|-
T Consensus 8 ~CPhCRq~ipALt 20 (161)
T PF09654_consen 8 QCPHCRQTIPALT 20 (161)
T ss_pred cCchhhcccchhe
Confidence 5999999999984
No 312
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=35.68 E-value=38 Score=22.85 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=16.0
Q ss_pred EEEecCCChhhhhhhHHHHH
Q psy17832 80 VDFFAKWCDPCKLMAPCLEA 99 (189)
Q Consensus 80 v~f~a~wC~~C~~~~p~l~~ 99 (189)
..|+.+.|..|++....|++
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~ 21 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEE 21 (112)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 45789999999998766654
No 313
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=34.20 E-value=33 Score=22.92 Aligned_cols=41 Identities=7% Similarity=0.222 Sum_probs=22.5
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHcc-CceEEEEEEcCccHh
Q psy17832 80 VDFFAKWCDPCKLMAPCLEAIVERMN-GKVQLAKVDVDLMTD 120 (189)
Q Consensus 80 v~f~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~ 120 (189)
|.+|.+.+.-..+++..-+++..-+. .++.|-.||+..+++
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~ 44 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEE 44 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHH
Confidence 44555555556666666666555443 368999999987654
No 314
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=33.17 E-value=62 Score=24.06 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=23.5
Q ss_pred EEEEEeCCeeEEEEecCCcCcHHHHHHHHHHhcCC
Q psy17832 132 VLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEKP 166 (189)
Q Consensus 132 t~~~~~~G~~~~~~~G~~~~~~~~l~~~l~~~l~~ 166 (189)
++++|+.||++ ..|..+. +++...+.++++.
T Consensus 55 a~LIF~SGK~V--cTGaKs~--ed~~~av~~~~~~ 85 (185)
T COG2101 55 AALIFRSGKVV--CTGAKSV--EDVHRAVKKLAKK 85 (185)
T ss_pred eEEEEecCcEE--EeccCcH--HHHHHHHHHHHHH
Confidence 67788999987 5788887 7777777766543
No 315
>KOG2868|consensus
Probab=32.96 E-value=1.3e+02 Score=24.72 Aligned_cols=39 Identities=3% Similarity=0.004 Sum_probs=20.7
Q ss_pred cccEEEEEeC-CeeEEEEecCCcCcHHHHHHHHHHhcCCC
Q psy17832 129 SVPVLIRMKD-GREQDRFVGFQKSNLEELEAFVTNAEKPA 167 (189)
Q Consensus 129 ~~Pt~~~~~~-G~~~~~~~G~~~~~~~~l~~~l~~~l~~~ 167 (189)
.-..+++|++ ...+..+=-+...+...+...+++++...
T Consensus 94 ~~g~fl~~rn~s~~i~glWf~d~~~~~ri~~L~~~ll~~~ 133 (335)
T KOG2868|consen 94 LQGPFLLYRNESGSIYGLWFYDKNDCQRIATLLKKLLYRY 133 (335)
T ss_pred ecCcceeeeccccceeEEEecCcchHHHHHHHHHHHHHHh
Confidence 3445555533 22232222233447778888888887533
No 316
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=31.52 E-value=1.5e+02 Score=19.31 Aligned_cols=35 Identities=11% Similarity=0.143 Sum_probs=20.3
Q ss_pred ceEEEEEEcCccHhHHHh----C----CCccccEEEEEeCCeeEE
Q psy17832 107 KVQLAKVDVDLMTDLAMD----Y----QVSSVPVLIRMKDGREQD 143 (189)
Q Consensus 107 ~v~~~~vd~d~~~~~~~~----~----~v~~~Pt~~~~~~G~~~~ 143 (189)
++.|-.+|++.+++.... - +-..+|-+++ +|+.++
T Consensus 30 ~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi--~~~~iG 72 (92)
T cd03030 30 KIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFN--GDEYCG 72 (92)
T ss_pred CCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEE--CCEEee
Confidence 577888888766643332 2 2345666544 665554
No 317
>PRK10387 glutaredoxin 2; Provisional
Probab=31.26 E-value=2e+02 Score=21.18 Aligned_cols=55 Identities=20% Similarity=0.198 Sum_probs=30.5
Q ss_pred EecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCee
Q psy17832 82 FFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGRE 141 (189)
Q Consensus 82 f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~ 141 (189)
++.+.|++|++.+-.++.. +-.+.+..++..+........+...+|+++. .+|..
T Consensus 4 y~~~~sp~~~kv~~~L~~~----gi~y~~~~~~~~~~~~~~~~~p~~~VPvL~~-~~g~~ 58 (210)
T PRK10387 4 YIYDHCPFCVKARMIFGLK----NIPVELIVLANDDEATPIRMIGQKQVPILQK-DDGSY 58 (210)
T ss_pred EeCCCCchHHHHHHHHHHc----CCCeEEEEcCCCchhhHHHhcCCcccceEEe-cCCeE
Confidence 4577899999877665443 2234554455443322223333456888754 35544
No 318
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=30.88 E-value=1e+02 Score=21.13 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=12.8
Q ss_pred HHhCCCccccEEEEE
Q psy17832 122 AMDYQVSSVPVLIRM 136 (189)
Q Consensus 122 ~~~~~v~~~Pt~~~~ 136 (189)
+-.|||..+|.++|.
T Consensus 76 Aw~lgi~k~PAVVfD 90 (114)
T PF07511_consen 76 AWSLGITKYPAVVFD 90 (114)
T ss_pred HHHhCccccCEEEEc
Confidence 567899999999884
No 319
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=30.80 E-value=1e+02 Score=21.43 Aligned_cols=56 Identities=21% Similarity=0.406 Sum_probs=37.0
Q ss_pred CCChhhhhhhHHHHHHHHHccC-------ceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeEEEE
Q psy17832 85 KWCDPCKLMAPCLEAIVERMNG-------KVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRF 145 (189)
Q Consensus 85 ~wC~~C~~~~p~l~~l~~~~~~-------~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~ 145 (189)
.-|..|..-...|.++.+.+.. .+.+-.+.++.. +++..| -.-|++.+ +|+.+...
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~-~~~~~~--~~S~~I~i--nG~piE~~ 75 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE-EFARQP--LESPTIRI--NGRPIEDL 75 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH-HHhhcc--cCCCeeeE--CCEehhHh
Confidence 3799998888777776555332 467777777664 566666 45677766 77766433
No 320
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=29.79 E-value=1.6e+02 Score=21.31 Aligned_cols=41 Identities=7% Similarity=0.182 Sum_probs=34.0
Q ss_pred CcEEEEEecCCChhhhhhhHHHHHHHHHccC-ceEEEEEEcC
Q psy17832 76 TPVIVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVD 116 (189)
Q Consensus 76 k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 116 (189)
+-+.+.++++.++.|.-+.-.++.+++.|.+ ++.+-.+++.
T Consensus 128 ~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~ 169 (171)
T PF07700_consen 128 NELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECM 169 (171)
T ss_dssp TEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred CEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 3477889999999999999999999999987 7777666543
No 321
>KOG1422|consensus
Probab=29.05 E-value=2.7e+02 Score=21.48 Aligned_cols=69 Identities=20% Similarity=0.266 Sum_probs=42.9
Q ss_pred CChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHh-CCCccccEEEEEeCCeeEEEEecCCcCcHHHHHHHHHHhc
Q psy17832 86 WCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMD-YQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTNAE 164 (189)
Q Consensus 86 wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~-~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~l~~~l~~~l 164 (189)
.|+.|+.+.=.| ..+- -.+.+-.||+...++-... ..-...|.+.+ +|+.+ .+. +.|+++|++-+
T Consensus 20 dcpf~qr~~m~L---~~k~-~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~--d~~~~------tDs--~~Ie~~Lee~l 85 (221)
T KOG1422|consen 20 DCPFCQRLFMTL---ELKG-VPFKVTTVDLSRKPEWFLDISPGGKPPVLKF--DEKWV------TDS--DKIEEFLEEKL 85 (221)
T ss_pred CChhHHHHHHHH---HHcC-CCceEEEeecCCCcHHHHhhCCCCCCCeEEe--CCcee------ccH--HHHHHHHHHhc
Confidence 477777655444 4332 2688888999887765544 45566776555 44322 233 78888888887
Q ss_pred CCCC
Q psy17832 165 KPAE 168 (189)
Q Consensus 165 ~~~~ 168 (189)
....
T Consensus 86 ~~p~ 89 (221)
T KOG1422|consen 86 PPPK 89 (221)
T ss_pred CCCC
Confidence 6544
No 322
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=28.74 E-value=1.1e+02 Score=21.32 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=27.2
Q ss_pred cEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCc
Q psy17832 77 PVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDL 117 (189)
Q Consensus 77 ~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~ 117 (189)
+.+|.|--.||.+=-.-+.-..++ +|+..+.++.|-|..
T Consensus 1 p~ii~F~C~wcsygaaDlag~~rm--qyp~~vRiIrv~CsG 39 (132)
T COG1908 1 PKIIAFACNWCSYGAADLAGTSRM--QYPPNVRIIRVMCSG 39 (132)
T ss_pred CeEEEEEcccccccchhhhccccc--cCCCceEEEEeeccC
Confidence 357889899998765544444333 688888888888753
No 323
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=28.49 E-value=1.9e+02 Score=22.44 Aligned_cols=49 Identities=12% Similarity=0.278 Sum_probs=33.2
Q ss_pred ChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCeeEE
Q psy17832 87 CDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQD 143 (189)
Q Consensus 87 C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 143 (189)
=-||..++..|++++++++.-+.++-=|+. ++..| --.++.+++|+++.
T Consensus 168 mkHsv~iMk~Lrrla~el~KtiviVlHDIN----fAS~Y----sD~IVAlK~G~vv~ 216 (252)
T COG4604 168 MKHSVQIMKILRRLADELGKTIVVVLHDIN----FASCY----SDHIVALKNGKVVK 216 (252)
T ss_pred hHHHHHHHHHHHHHHHHhCCeEEEEEeccc----HHHhh----hhheeeecCCEEEe
Confidence 479999999999999999755444433332 22222 22456779999985
No 324
>PLN00062 TATA-box-binding protein; Provisional
Probab=27.45 E-value=1e+02 Score=22.89 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=20.6
Q ss_pred EEEEEeCCeeEEEEecCCcCcHHHHHHHHHHhc
Q psy17832 132 VLIRMKDGREQDRFVGFQKSNLEELEAFVTNAE 164 (189)
Q Consensus 132 t~~~~~~G~~~~~~~G~~~~~~~~l~~~l~~~l 164 (189)
++++|..|+++ +.|.... +++.+.++.++
T Consensus 140 ~~liF~sGkvv--itGaks~--~~~~~ai~~i~ 168 (179)
T PLN00062 140 VLLIFVSGKIV--ITGAKVR--EEIYTAFENIY 168 (179)
T ss_pred EEEEeCCCEEE--EEecCCH--HHHHHHHHHHH
Confidence 56666888887 4677777 77777776654
No 325
>KOG3360|consensus
Probab=27.41 E-value=1.3e+02 Score=20.00 Aligned_cols=44 Identities=14% Similarity=0.293 Sum_probs=30.7
Q ss_pred hHHHhCCCccccEEEEE-eCCeeEEEEecCCcCcHHHHHHHHHHhcCCC
Q psy17832 120 DLAMDYQVSSVPVLIRM-KDGREQDRFVGFQKSNLEELEAFVTNAEKPA 167 (189)
Q Consensus 120 ~~~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~~~l~~~l~~~l~~~ 167 (189)
+-++++||+++ +.- ++|.+...+.|+... .+.+..||...-...
T Consensus 29 ~~a~~lGlrGW---v~Nt~~GtvkG~leGp~~~-vd~mk~wl~~~gsP~ 73 (98)
T KOG3360|consen 29 DEAKKLGLRGW---VMNTSEGTVKGQLEGPPEK-VDEMKEWLLTRGSPV 73 (98)
T ss_pred HHHHhhcceEE---EEecCCceEEEEEeCCHHH-HHHHHHHHHhcCChh
Confidence 56889999985 444 899999999997643 356666666444333
No 326
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=27.06 E-value=1e+02 Score=22.78 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=21.7
Q ss_pred EEEEEeCCeeEEEEecCCcCcHHHHHHHHHHhc
Q psy17832 132 VLIRMKDGREQDRFVGFQKSNLEELEAFVTNAE 164 (189)
Q Consensus 132 t~~~~~~G~~~~~~~G~~~~~~~~l~~~l~~~l 164 (189)
++++|..|+++ ..|..+. +++...+++++
T Consensus 140 ~~lIF~SGKvv--itGaks~--~~~~~a~~~i~ 168 (174)
T cd04518 140 VLLLFSSGKMV--ITGAKSE--EDAKRAVEKLL 168 (174)
T ss_pred EEEEeCCCEEE--EEecCCH--HHHHHHHHHHH
Confidence 66777899887 5688777 77777777654
No 327
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=26.86 E-value=31 Score=19.39 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=14.3
Q ss_pred CCChhhhhhhHHHHHHHHHcc
Q psy17832 85 KWCDPCKLMAPCLEAIVERMN 105 (189)
Q Consensus 85 ~wC~~C~~~~p~l~~l~~~~~ 105 (189)
-+|.||+.=.+.+.++.++..
T Consensus 17 GkC~PCR~Gt~~l~~~l~~i~ 37 (46)
T PF10589_consen 17 GKCTPCREGTRQLAEILEKIV 37 (46)
T ss_dssp S--HHHHCCCCHHHHHHHHHT
T ss_pred CCCCCcHhHHHHHHHHHHHHH
Confidence 469999988888877766553
No 328
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=26.76 E-value=86 Score=23.51 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=15.7
Q ss_pred cCHHHHHHHHHhCCCcEEEEEecCCC
Q psy17832 62 TDQKEFEAKVKQASTPVIVDFFAKWC 87 (189)
Q Consensus 62 ~~~~~~~~~~~~~~k~vvv~f~a~wC 87 (189)
++-+++.+.+...++|++|.|-+-|-
T Consensus 119 is~~~lr~~l~~~~~P~LllFGTGwG 144 (185)
T PF09936_consen 119 ISYAELRRMLEEEDRPVLLLFGTGWG 144 (185)
T ss_dssp B-HHHHHHHHHH--S-EEEEE--TT-
T ss_pred cCHHHHHHHHhccCCeEEEEecCCCC
Confidence 46788888877788999999998884
No 329
>PRK10026 arsenate reductase; Provisional
Probab=26.69 E-value=82 Score=22.48 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=17.1
Q ss_pred EEEEecCCChhhhhhhHHHHH
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEA 99 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~ 99 (189)
+..|+-+.|..|++....|++
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~ 24 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRN 24 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 456789999999998877764
No 330
>KOG1731|consensus
Probab=26.63 E-value=90 Score=27.74 Aligned_cols=52 Identities=10% Similarity=0.148 Sum_probs=39.6
Q ss_pred hHHHhCCCccccEEEEEeCCeeEEEEecCCcCcHHHHHHHHHHhcCCCCCCCCCC
Q psy17832 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEKPAETSEGVP 174 (189)
Q Consensus 120 ~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~~~l~~~l~~~l~~~~~~~~~~ 174 (189)
.+.+ ++++..|+.++|++|.......-..+. +.+.+.|.++++......++.
T Consensus 228 ~~~~-l~~~~~~~~llfrnG~~q~l~~~~~s~--~~y~~~I~~~lg~~~~a~~pt 279 (606)
T KOG1731|consen 228 PLFG-LKPDNFPLALLFRNGEQQPLWPSSSSR--SAYVKKIDDLLGDKNEASGPT 279 (606)
T ss_pred cccc-cCCCCchhhhhhcCCcccccccccccH--HHHHHHHHHHhcCccccCCCC
Confidence 3344 888999999999999876555555555 789999999998887765544
No 331
>PRK00394 transcription factor; Reviewed
Probab=26.59 E-value=1.1e+02 Score=22.83 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=21.5
Q ss_pred EEEEEeCCeeEEEEecCCcCcHHHHHHHHHHhc
Q psy17832 132 VLIRMKDGREQDRFVGFQKSNLEELEAFVTNAE 164 (189)
Q Consensus 132 t~~~~~~G~~~~~~~G~~~~~~~~l~~~l~~~l 164 (189)
++++|..|+++ ..|..+. +++...++.++
T Consensus 141 ~~lIF~SGKvv--itGaks~--~~~~~a~~~i~ 169 (179)
T PRK00394 141 VVLLFGSGKLV--ITGAKSE--EDAEKAVEKIL 169 (179)
T ss_pred EEEEEcCCEEE--EEecCCH--HHHHHHHHHHH
Confidence 66777899887 5788777 77777776654
No 332
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=26.48 E-value=93 Score=21.65 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=17.5
Q ss_pred EEEEEecCCChhhhhhhHHHHH
Q psy17832 78 VIVDFFAKWCDPCKLMAPCLEA 99 (189)
Q Consensus 78 vvv~f~a~wC~~C~~~~p~l~~ 99 (189)
.+..|+-+.|..|++....|++
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~ 23 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKA 23 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHH
Confidence 3556778999999998877765
No 333
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=26.39 E-value=1.3e+02 Score=19.95 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=19.0
Q ss_pred EecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCcc
Q psy17832 82 FFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118 (189)
Q Consensus 82 f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 118 (189)
|+-+.|..|++....|++ .++.|-.+|+-..
T Consensus 1 Y~~~~C~t~rka~~~L~~------~gi~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE------NGIEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH------TT--EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHH------cCCCeEeehhhhC
Confidence 567899999998877764 2455556776543
No 334
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=26.06 E-value=1.2e+02 Score=22.54 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=21.3
Q ss_pred EEEEEeCCeeEEEEecCCcCcHHHHHHHHHHhc
Q psy17832 132 VLIRMKDGREQDRFVGFQKSNLEELEAFVTNAE 164 (189)
Q Consensus 132 t~~~~~~G~~~~~~~G~~~~~~~~l~~~l~~~l 164 (189)
++++|..|+++ +.|.... +++.+.++.++
T Consensus 140 ~~liF~sGkvv--itGaks~--~~~~~a~~~i~ 168 (174)
T cd04516 140 VLLIFVSGKIV--LTGAKSR--EEIYQAFENIY 168 (174)
T ss_pred EEEEeCCCEEE--EEecCCH--HHHHHHHHHHH
Confidence 35666889887 4677777 78888777665
No 335
>PRK10853 putative reductase; Provisional
Probab=25.94 E-value=80 Score=21.64 Aligned_cols=21 Identities=33% Similarity=0.333 Sum_probs=16.9
Q ss_pred EEEEecCCChhhhhhhHHHHH
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEA 99 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~ 99 (189)
+..|+-+.|..|++....|++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~ 22 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEA 22 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHH
Confidence 446779999999998877764
No 336
>PF09499 RE_ApaLI: ApaLI-like restriction endonuclease; InterPro: IPR019036 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes R.ApaLI and R.XbaI restriction endonucleases. ApaLI recognises and cleaves the sequence GTGCAC.
Probab=25.92 E-value=2.9e+02 Score=20.70 Aligned_cols=44 Identities=14% Similarity=0.198 Sum_probs=33.4
Q ss_pred HHHHHHHhC-CCcEEEEEecCCChhhhhhhHHHHHHHHHccCceE
Q psy17832 66 EFEAKVKQA-STPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQ 109 (189)
Q Consensus 66 ~~~~~~~~~-~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~ 109 (189)
.+.+.+.+. -+|+.|+||-|.-..-......|+.++....+...
T Consensus 133 trikvi~~aGy~PIrimf~~P~r~~~~~iq~~L~tlY~gvgG~yY 177 (191)
T PF09499_consen 133 TRIKVIKSAGYKPIRIMFYYPNREQAIRIQTTLKTLYNGVGGEYY 177 (191)
T ss_pred HHHHHHHHCCCcceEEEEeCCCHHHHHHHHHHHHHHHHhcCceEe
Confidence 344444443 59999999999988888888899999888776543
No 337
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=25.63 E-value=1.5e+02 Score=17.52 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=33.2
Q ss_pred EEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCc-cHhHHHhCCCccccEEEEEeCCee
Q psy17832 81 DFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDL-MTDLAMDYQVSSVPVLIRMKDGRE 141 (189)
Q Consensus 81 ~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-~~~~~~~~~v~~~Pt~~~~~~G~~ 141 (189)
.|+.+.|++|++.+-.+... ..+-.+.++.+|... .+++.+......+|+++. .+|..
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~--~~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~g~~ 61 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHET--GLGDDVELVLVNPWSDDESLLAVNPLGKIPALVL-DDGEA 61 (73)
T ss_pred EecCCCCcHHHHHHHHHHHh--CCCCCcEEEEcCcccCChHHHHhCCCCCCCEEEE-CCCCE
Confidence 46688899999877555431 122245555565433 345555545667897653 35543
No 338
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=25.12 E-value=1.4e+02 Score=16.96 Aligned_cols=37 Identities=24% Similarity=0.281 Sum_probs=27.0
Q ss_pred EEEeCCeeEEEEecCCcCcHHHHHHHHHHhcCCCCCC
Q psy17832 134 IRMKDGREQDRFVGFQKSNLEELEAFVTNAEKPAETS 170 (189)
Q Consensus 134 ~~~~~G~~~~~~~G~~~~~~~~l~~~l~~~l~~~~~~ 170 (189)
.+.++|++-....|.....=.++.+.|++.|+.....
T Consensus 4 ~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~LG~v~~~ 40 (48)
T PF11211_consen 4 TIYPDGRVEEEVEGFKGSSCLEATAALEEALGTVTSR 40 (48)
T ss_pred EECCCcEEEEEEEeccChhHHHHHHHHHHHhCceeee
Confidence 3448999988888877654467778888888766533
No 339
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.74 E-value=1.1e+02 Score=22.29 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=23.5
Q ss_pred cCHHHHHHHHHhCCCcEEEEEecCCChhh
Q psy17832 62 TDQKEFEAKVKQASTPVIVDFFAKWCDPC 90 (189)
Q Consensus 62 ~~~~~~~~~~~~~~k~vvv~f~a~wC~~C 90 (189)
++-+.+...+...+|++++.|-.-|--+-
T Consensus 120 isy~~lr~~I~e~dkp~LilfGTGwGlpd 148 (190)
T COG4752 120 ISYSWLRNEIQERDKPWLILFGTGWGLPD 148 (190)
T ss_pred ccHHHHHHHHhhcCCcEEEEecCCCCCCH
Confidence 45677777778889999999999997554
No 340
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=24.56 E-value=2.2e+02 Score=18.95 Aligned_cols=29 Identities=14% Similarity=0.437 Sum_probs=18.6
Q ss_pred EEEEecCCChhhhhhh-HHHHHH--HHHccCc
Q psy17832 79 IVDFFAKWCDPCKLMA-PCLEAI--VERMNGK 107 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~-p~l~~l--~~~~~~~ 107 (189)
|-.||-+-||.|+.+. ..|..+ ...+.+.
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~~ 34 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFPVWTYEKLSDI 34 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHHHHHHhhccce
Confidence 5568999999999863 334442 2444443
No 341
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=24.24 E-value=2.6e+02 Score=19.65 Aligned_cols=24 Identities=21% Similarity=0.566 Sum_probs=15.8
Q ss_pred EEEe--cCCChhhhhhhHHHHHHHHHccC
Q psy17832 80 VDFF--AKWCDPCKLMAPCLEAIVERMNG 106 (189)
Q Consensus 80 v~f~--a~wC~~C~~~~p~l~~l~~~~~~ 106 (189)
|..| -+-|..|.. .++++.++|++
T Consensus 99 i~l~te~~pC~SC~~---vi~qF~~~~pn 124 (133)
T PF14424_consen 99 IDLFTELPPCESCSN---VIEQFKKDFPN 124 (133)
T ss_pred EEEEecCCcChhHHH---HHHHHHHHCCC
Confidence 4455 445999987 56666677863
No 342
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=23.89 E-value=1.3e+02 Score=20.54 Aligned_cols=49 Identities=18% Similarity=0.347 Sum_probs=33.1
Q ss_pred ChhhhhhhHHHHHHHHHccCceEEEEEEcCccH-hHHHhCC--CccccEEEEE
Q psy17832 87 CDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT-DLAMDYQ--VSSVPVLIRM 136 (189)
Q Consensus 87 C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-~~~~~~~--v~~~Pt~~~~ 136 (189)
|++|..+.-.|... -.+..++.+..|+..... ++....| =++.|++++=
T Consensus 24 Cp~c~~iEGlLa~~-P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~ 75 (112)
T PF11287_consen 24 CPHCAAIEGLLASF-PDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLA 75 (112)
T ss_pred CCchHHHHhHHhhC-hhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeC
Confidence 99998877666432 233457888899987654 4455555 3689997775
No 343
>KOG4277|consensus
Probab=23.83 E-value=4.1e+02 Score=21.85 Aligned_cols=95 Identities=15% Similarity=0.242 Sum_probs=51.2
Q ss_pred CeEEecCHHHH-HHHHHhCCCcEEEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCC-CccccEEE
Q psy17832 57 TSFQITDQKEF-EAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQ-VSSVPVLI 134 (189)
Q Consensus 57 ~~~~~~~~~~~-~~~~~~~~k~vvv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~-v~~~Pt~~ 134 (189)
..++.++..+. ...+..++++.+|+|-..- -|.+++..+....++.+.+.- ....+++-.++ ....|.+.
T Consensus 134 aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge-------~PL~d~fidAASe~~~~a~Ff-SaseeVaPe~~~~kempaV~ 205 (468)
T KOG4277|consen 134 AIIEPINENQIEFEHLQARHQPFFVFFGTGE-------GPLFDAFIDAASEKFSVARFF-SASEEVAPEENDAKEMPAVA 205 (468)
T ss_pred ceeeecChhHHHHHHHhhccCceEEEEeCCC-------CcHHHHHHHHhhhheeeeeee-ccccccCCcccchhhccceE
Confidence 44555555333 3344667888887665432 345555555544455544432 22223333332 45579999
Q ss_pred EEeCCeeEEEEecCCcCcHHHHHHHHHHh
Q psy17832 135 RMKDGREQDRFVGFQKSNLEELEAFVTNA 163 (189)
Q Consensus 135 ~~~~G~~~~~~~G~~~~~~~~l~~~l~~~ 163 (189)
+|++...--...| +. +.|.+||++-
T Consensus 206 VFKDetf~i~de~--dd--~dLseWinRE 230 (468)
T KOG4277|consen 206 VFKDETFEIEDEG--DD--EDLSEWINRE 230 (468)
T ss_pred EEccceeEEEecC--ch--hHHHHHHhHh
Confidence 9977644322333 33 6788888764
No 344
>PHA02131 hypothetical protein
Probab=23.68 E-value=1.7e+02 Score=17.32 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=16.5
Q ss_pred ccccEEEEEeCCeeEEEEecCCcC
Q psy17832 128 SSVPVLIRMKDGREQDRFVGFQKS 151 (189)
Q Consensus 128 ~~~Pt~~~~~~G~~~~~~~G~~~~ 151 (189)
.++-.+++|++|+++.-.......
T Consensus 27 ~g~~c~imfk~~~v~dctfk~dta 50 (70)
T PHA02131 27 FGISCWIMFKNDQVIDCTFKNDTA 50 (70)
T ss_pred cceEEEEEEcCCCEEEeeecCcHH
Confidence 356678999999998754444433
No 345
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=23.25 E-value=1.3e+02 Score=22.22 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=21.1
Q ss_pred EEEEEeCCeeEEEEecCCcCcHHHHHHHHHHhc
Q psy17832 132 VLIRMKDGREQDRFVGFQKSNLEELEAFVTNAE 164 (189)
Q Consensus 132 t~~~~~~G~~~~~~~G~~~~~~~~l~~~l~~~l 164 (189)
++++|..|+++ ..|.... +++.+.++.++
T Consensus 141 t~lIF~sGkiv--itGaks~--~~~~~a~~~i~ 169 (174)
T cd04517 141 TLSIFSTGSVT--VTGARSM--EDVREAVEKIY 169 (174)
T ss_pred EEEEeCCCEEE--EEecCCH--HHHHHHHHHHH
Confidence 56666888876 5677777 78888777665
No 346
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=23.22 E-value=1.5e+02 Score=21.69 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=21.6
Q ss_pred EEecCCChhhhhhhHHHHHHHHHcc
Q psy17832 81 DFFAKWCDPCKLMAPCLEAIVERMN 105 (189)
Q Consensus 81 ~f~a~wC~~C~~~~p~l~~l~~~~~ 105 (189)
.|+..-||.|-...+.|.++.++++
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCC
Confidence 4567779999999999999999985
No 347
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.11 E-value=1.1e+02 Score=28.67 Aligned_cols=30 Identities=23% Similarity=0.577 Sum_probs=21.7
Q ss_pred cCCChhhhhhhHHHHHHHHHccCceEEEEE
Q psy17832 84 AKWCDPCKLMAPCLEAIVERMNGKVQLAKV 113 (189)
Q Consensus 84 a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v 113 (189)
-.|||.|+.....++=-+++.++.+.+++.
T Consensus 172 VNWcP~~~TAiSd~EVe~~e~~g~L~~i~y 201 (877)
T COG0525 172 VNWCPKCRTAISDIEVEYKEVEGKLYYIKY 201 (877)
T ss_pred ccCCCccccchhhhhhccceeeeeEEEEEE
Confidence 579999999888887766666555544444
No 348
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=22.74 E-value=1.8e+02 Score=19.99 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=12.8
Q ss_pred HHhCCCccccEEEEE
Q psy17832 122 AMDYQVSSVPVLIRM 136 (189)
Q Consensus 122 ~~~~~v~~~Pt~~~~ 136 (189)
+-.|||..+|.++|-
T Consensus 77 Aw~lGi~k~PAVV~D 91 (113)
T TIGR03757 77 AWQLGVTKIPAVVVD 91 (113)
T ss_pred HHHcCCccCCEEEEc
Confidence 567999999999884
No 349
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=21.86 E-value=1.3e+02 Score=22.92 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=24.1
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHc
Q psy17832 78 VIVDFFAKWCDPCKLMAPCLEAIVERM 104 (189)
Q Consensus 78 vvv~f~a~wC~~C~~~~p~l~~l~~~~ 104 (189)
.|.+.+.|-|+.|--..|.++++....
T Consensus 3 ~lhYifDPmCgWCyGa~Pll~~l~~~~ 29 (212)
T COG3531 3 TLHYIFDPMCGWCYGAAPLLEALSAQP 29 (212)
T ss_pred eeEEecCcchhhhhCccHHHHHHHhcC
Confidence 577889999999999999999998764
No 350
>PRK11752 putative S-transferase; Provisional
Probab=21.50 E-value=3.3e+02 Score=21.26 Aligned_cols=56 Identities=11% Similarity=0.146 Sum_probs=34.9
Q ss_pred EEEecCCChhhhhhhHHHHHH-HHHccC-ceEEEEEEcCc----cHhHHHhCCCccccEEEE
Q psy17832 80 VDFFAKWCDPCKLMAPCLEAI-VERMNG-KVQLAKVDVDL----MTDLAMDYQVSSVPVLIR 135 (189)
Q Consensus 80 v~f~a~wC~~C~~~~p~l~~l-~~~~~~-~v~~~~vd~d~----~~~~~~~~~v~~~Pt~~~ 135 (189)
+.+|..+|+.|++..-.|+++ ....++ .+.++.||... .+++.+..-...+|+++.
T Consensus 45 ~~Ly~~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~ 106 (264)
T PRK11752 45 LQLYSLGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLD 106 (264)
T ss_pred eEEecCCCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEe
Confidence 344456799999988777774 333322 46677777643 345555444567999864
No 351
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=21.11 E-value=2e+02 Score=17.11 Aligned_cols=55 Identities=16% Similarity=0.136 Sum_probs=31.2
Q ss_pred EEecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCC-C-ccccEEEEEeCCee
Q psy17832 81 DFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQ-V-SSVPVLIRMKDGRE 141 (189)
Q Consensus 81 ~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~-v-~~~Pt~~~~~~G~~ 141 (189)
.|+.+.|+.|++.+-.+... +-.+....++.........+++ . ..+|++.. +|..
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~----gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~--~~~~ 59 (74)
T cd03058 3 LLGAWASPFVLRVRIALALK----GVPYEYVEEDLGNKSELLLASNPVHKKIPVLLH--NGKP 59 (74)
T ss_pred EEECCCCchHHHHHHHHHHc----CCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEE--CCEE
Confidence 35677899999987666543 2234544555443322233443 3 57998753 5543
No 352
>PLN02182 cytidine deaminase
Probab=20.99 E-value=46 Score=27.44 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=11.1
Q ss_pred cCCChhhhhhhHHH
Q psy17832 84 AKWCDPCKLMAPCL 97 (189)
Q Consensus 84 a~wC~~C~~~~p~l 97 (189)
.+=|++||+++-+|
T Consensus 129 ~sPCG~CRQfm~Ef 142 (339)
T PLN02182 129 GTPCGHCLQFLMEM 142 (339)
T ss_pred cCCCchhHHHHHHh
Confidence 45699999987666
No 353
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=20.73 E-value=77 Score=18.93 Aligned_cols=46 Identities=11% Similarity=0.129 Sum_probs=25.6
Q ss_pred cCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCee
Q psy17832 84 AKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGRE 141 (189)
Q Consensus 84 a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~ 141 (189)
.+||++|++.+-.+... +-.+.+..++... .-.-..+|++.. +|+.
T Consensus 13 ~s~sp~~~~v~~~L~~~----~i~~~~~~~~~~~------~~p~g~vP~l~~--~g~~ 58 (72)
T cd03054 13 PSLSPECLKVETYLRMA----GIPYEVVFSSNPW------RSPTGKLPFLEL--NGEK 58 (72)
T ss_pred CCCCHHHHHHHHHHHhC----CCceEEEecCCcc------cCCCcccCEEEE--CCEE
Confidence 46899999988766542 2234444444322 112346887754 5544
No 354
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=20.52 E-value=3.7e+02 Score=20.00 Aligned_cols=55 Identities=18% Similarity=0.153 Sum_probs=29.0
Q ss_pred EecCCChhhhhhhHHHHHHHHHccCceEEEEEEcCccHhHHHhCCCccccEEEEEeCCee
Q psy17832 82 FFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGRE 141 (189)
Q Consensus 82 f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~ 141 (189)
++...|++|++.+=.|.... -.+..+.++.+......+......+|++.. .+|..
T Consensus 3 y~~~~sp~~~kvr~~L~~~g----l~~e~~~~~~~~~~~~~~~np~g~vP~l~~-~~g~~ 57 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLKN----IPVEKHVLLNDDEETPIRMIGAKQVPILQK-DDGRA 57 (209)
T ss_pred ecCCCCChHHHHHHHHHHcC----CCeEEEECCCCcchhHHHhcCCCCcceEEe-eCCeE
Confidence 45677999998776554421 133333333333333333333567887643 35544
No 355
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=20.39 E-value=2.7e+02 Score=20.79 Aligned_cols=37 Identities=14% Similarity=-0.004 Sum_probs=26.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHccCceEEEEEEc
Q psy17832 79 IVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDV 115 (189)
Q Consensus 79 vv~f~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~ 115 (189)
|-.||..-||+|---...|+++.+.++-.+.+.-+.+
T Consensus 3 Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 3 IELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred eEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 3345577799999999999998877655555555544
No 356
>PRK12411 cytidine deaminase; Provisional
Probab=20.38 E-value=55 Score=23.03 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=9.1
Q ss_pred CChhhhhhhHHH
Q psy17832 86 WCDPCKLMAPCL 97 (189)
Q Consensus 86 wC~~C~~~~p~l 97 (189)
=|+.||+++-+|
T Consensus 85 PCG~CRQ~l~Ef 96 (132)
T PRK12411 85 PCGACRQVMVEL 96 (132)
T ss_pred CchhHHHHHHHh
Confidence 499999976554
Done!