RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17832
(189 letters)
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion,
electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB:
1uvz_A 1w89_A
Length = 119
Score = 115 bits (291), Expect = 5e-34
Identities = 49/101 (48%), Positives = 73/101 (72%), Gaps = 1/101 (0%)
Query: 56 STSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDV 115
ST+F I D +F+ +V + TPV+VDF A+WC PCK++ P LE +V + +GKV +AKVD+
Sbjct: 12 STTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDI 71
Query: 116 DLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEE 155
D TDLA++Y+VS+VP ++ MK+G D+FVG + + LE
Sbjct: 72 DDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEA 112
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 108 bits (273), Expect = 2e-31
Identities = 35/98 (35%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 60 QITDQKEFEAKVKQAST-PVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
Q+ D+ + + ++ +AS V++DFFA WC PCK+++P L + + V + KVDVD
Sbjct: 4 QVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDEC 63
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEEL 156
D+AM+Y +SS+P + +K+G + + F G LE++
Sbjct: 64 EDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDV 101
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium
falciparum}
Length = 128
Score = 106 bits (266), Expect = 4e-30
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
Q V +T +++ FFAKWC C + + ++ + + ++ L KVD+D
Sbjct: 28 QQNGS-NIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNE 86
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEEL 156
LA + V S+P +I +K+ R F ++L L
Sbjct: 87 SLARKFSVKSLPTIILLKNKTMLARKDHFVSSNDLIAL 124
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 104 bits (262), Expect = 2e-29
Identities = 27/127 (21%), Positives = 46/127 (36%), Gaps = 3/127 (2%)
Query: 54 APSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKV 113
S+ + D + +V+ + PV+V F++ C CK M P E + ++
Sbjct: 4 NGSSIIEFEDM-TWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRI 62
Query: 114 DVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEE-LEAFVTNAEKPAETSE 171
++ A Y V P GR VG S L+ + + + E+ S
Sbjct: 63 NIATNPWTAEKYGVQGTPTFKFFCHGRPVWEQVGQIYPSILKNAVRDMLQHGEECIRKST 122
Query: 172 GVPSQTT 178
V T
Sbjct: 123 PVGQDIT 129
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
2.90A {Bacillus cereus}
Length = 105
Score = 103 bits (258), Expect = 3e-29
Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
+E +++ V++ + C C +M + ++E N V+ ++ + M
Sbjct: 4 TFKTIEELATYIEE-QQLVLLFIKTENCGVCDVMLRKVNYVLENYN-YVEKIEILLQDMQ 61
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFV 160
++A Y V + P ++ +G+E R F +LE LE +
Sbjct: 62 EIAGRYAVFTGPTVLLFYNGKEILRESRFI--SLENLERTI 100
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 102 bits (257), Expect = 6e-29
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 60 QITDQKEFEAKVKQA---STPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVD 116
I + ++A++ + P++VDF A WC PCK++AP E + GKV KVDVD
Sbjct: 6 VIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVD 65
Query: 117 LMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEEL 156
+ +A ++++P KDG + D VG + L+ L
Sbjct: 66 AVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKAL 105
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 102 bits (255), Expect = 1e-28
Identities = 31/97 (31%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
++T+ EF +KQ + +++DF+A WC PCK+M P L +++ V+ K DVD
Sbjct: 16 KLTNLTEFRNLIKQ-NDKLVIDFYATWCGPCKMMQPHLTKLIQAY-PDVRFVKCDVDESP 73
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEEL 156
D+A + +V+++P + KDG+ + +G + LE+
Sbjct: 74 DIAKECEVTAMPTFVLGKDGQLIGKIIGANPTALEKG 110
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 101 bits (254), Expect = 1e-28
Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
Query: 60 QITDQKEFEAKVKQAS-TPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
+ + E + + ++VDFFA+WC PC+ +AP +EA+ + + +V+ AKVDVD
Sbjct: 3 VLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEI-PEVEFAKVDVDQN 61
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEEL 156
+ A Y V+++P + +KDG+E DRF G ++ L E
Sbjct: 62 EEAAAKYSVTAMPTFVFIKDGKEVDRFSGANETKLRET 99
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 101 bits (254), Expect = 1e-28
Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
++ FE + +V F K C C+ + P LE + VDV+
Sbjct: 8 KLDTN-TFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEK 66
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEEL 156
L + + VP ++ KDG + + G +E++
Sbjct: 67 TLFQRFSLKGVPQILYFKDGEYKGKMAGDVEDDEVEQM 104
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport;
1.60A {Nostoc SP} SCOP: c.47.1.1
Length = 115
Score = 101 bits (254), Expect = 2e-28
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
ITD EFE++V +A PV+V F+A WC PC+LM+P + + ++++ K+++D
Sbjct: 11 TITDA-EFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNP 69
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEE-LEAFVTN 162
Y+V VP L +K + D G K L L+ + N
Sbjct: 70 TTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDTHLNN 114
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A
{Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A
2l59_A
Length = 121
Score = 101 bits (254), Expect = 2e-28
Identities = 43/105 (40%), Positives = 61/105 (58%), Gaps = 3/105 (2%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
++TD F V ++ PV+VDF+A WC PCK++AP LE I + +AK+DVD
Sbjct: 16 KVTDA-SFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNP 74
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEE-LEAFVTN 162
+ A ++QV S+P LI KDG+ R VG + K+ L L V N
Sbjct: 75 ETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPN 119
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 102 bits (256), Expect = 3e-28
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 55 PSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVD 114
+ D A+ ++ P++VDF+A WC PC+ MAP +A + G+V+LAK+D
Sbjct: 45 ITGKVAGIDP-AILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKID 103
Query: 115 VDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEE 155
+A +++ +P I GRE R G + S L
Sbjct: 104 TQAHPAVAGRHRIQGIPAFILFHKGRELARAAGARPASELVG 145
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 100 bits (252), Expect = 3e-28
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
F T + ++K+A V+VDFFA WC PC+ + L +I E V KVDVD
Sbjct: 8 FNGTHE-ALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDKN 65
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQ----DRFVGFQKSNLEEL 156
+ A Y VSS+P L +K + D+FVG S ++
Sbjct: 66 GNAADAYGVSSIPALFFVKKEGNEIKTLDQFVGADVSRIKAD 107
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Length = 106
Score = 100 bits (251), Expect = 4e-28
Identities = 40/97 (41%), Positives = 64/97 (65%), Gaps = 2/97 (2%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
++TD+ FE +V ++ PV+VDF+A WC PC+++AP +E + + GKV++ KV+VD
Sbjct: 5 EVTDE-NFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENP 63
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEE 155
+ A Y + S+P L+ K+G+ DR VG Q K L+E
Sbjct: 64 NTAAQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKE 100
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 100 bits (252), Expect = 4e-28
Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 60 QITDQKEFEAKVKQAS-TPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
++ + E+ ++Q V+VDFFA WC PCK +AP + + E+ + KVDVD +
Sbjct: 17 ELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAIF--VKVDVDKL 74
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEEL 156
+ A Y +S++P I +K+G + VG + +E++
Sbjct: 75 EETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDM 112
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 100 bits (252), Expect = 4e-28
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 60 QITDQKEFEAKVKQAS-TPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
QI + F+ + A V+VDF A WC P K++ P ++ E+ V +VDVD
Sbjct: 15 QIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKY-SNVIFLEVDVDDC 73
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEEL 156
D+A + +V S+P K G++ F G K LE
Sbjct: 74 QDVASECEVKSMPTFQFFKKGQKVGEFSGANKEKLEAT 111
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 101 bits (253), Expect = 4e-28
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 5/128 (3%)
Query: 44 PTGNKTPPAEAPSTSFQITDQKEFEAKVKQA---STPVIVDFFAKWCDPCKLMAPCLEAI 100
P + A ++ EF+A++ +A VI+DF A WC PC+ +AP
Sbjct: 2 PMAAEEGMAAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEY 61
Query: 101 VERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEE-LEAF 159
++ G V KVDVD + ++A Y V ++P + +KDG E D+ VG +K +L+ +
Sbjct: 62 AKKFPGAV-FLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 120
Query: 160 VTNAEKPA 167
V A
Sbjct: 121 VGATAASA 128
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 100 bits (252), Expect = 4e-28
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 52 AEAPSTSFQITDQKEFEAKVKQAST---PVIVDFFAKWCDPCKLMAPCLEAIVERMNGKV 108
A ++EF+ + VI+DF A WC PC+++AP ++ G +
Sbjct: 2 AAEEGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAI 61
Query: 109 QLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEE-LEAFVTNA 163
KVDVD + D+A Y V ++P + +KDG + D VG +K ++ + A + +A
Sbjct: 62 -FLKVDVDELKDVAEAYNVEAMPTFLFIKDGEKVDSVVGGRKDDIHTKIVALMGSA 116
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB:
3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 100 bits (251), Expect = 5e-28
Identities = 33/97 (34%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
Q EF++ + Q V+VDF+A WC PCK++AP +E E+ + K+DVD +
Sbjct: 10 QFKTASEFDSAIAQ-DKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELG 67
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEEL 156
D+A +VS++P L+ K+G+E + VG + +++
Sbjct: 68 DVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQA 104
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 101 bits (254), Expect = 5e-28
Identities = 22/135 (16%), Positives = 59/135 (43%), Gaps = 3/135 (2%)
Query: 53 EAPSTSFQITDQKEFEAKVKQAS-TPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLA 111
A + ++ +FE ++ + + ++V F+A W C M + + + + +V
Sbjct: 9 AAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL-PQVSFV 67
Query: 112 KVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEE-LEAFVTNAEKPAETS 170
K++ + + +++ Y++SSVP + K+ ++ DR G L + ++ ++
Sbjct: 68 KLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFLPSAK 127
Query: 171 EGVPSQTTNENAPAQ 185
V + + +
Sbjct: 128 VKVDTDPNSSSVDKL 142
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP:
c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B*
1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B*
1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T*
2h6x_A ...
Length = 108
Score = 100 bits (251), Expect = 5e-28
Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
+TD F+ V +A ++VDF+A+WC PCK++AP L+ I + GK+ +AK+++D
Sbjct: 6 HLTDD-SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEE 155
A Y + +P L+ K+G VG K L+E
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Length = 112
Score = 100 bits (251), Expect = 6e-28
Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
+T Q EF++ + Q + VIVDFFA+WC PCK +AP E + K+ KVDVD ++
Sbjct: 12 IVTSQAEFDSIISQ-NELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEVS 69
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEEL 156
++ ++S+P K+G D +G S L++L
Sbjct: 70 EVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQL 106
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A
{Escherichia coli}
Length = 128
Score = 100 bits (252), Expect = 6e-28
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 36 NTTATNTTPTGNKTPPAEAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAP 95
++ + + P +TD F+ V +A ++VDF+A+WC P K++AP
Sbjct: 2 GSSHHHHHHSSGLVPRGSHSDKIIHLTDD-SFDTDVLKADGAILVDFWAEWCGPAKMIAP 60
Query: 96 CLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLE 154
L+ I + GK+ +AK+++D A Y + +P L+ K+G VG K L+
Sbjct: 61 ILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLK 120
Query: 155 E 155
E
Sbjct: 121 E 121
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE,
fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Length = 121
Score = 100 bits (251), Expect = 6e-28
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDVDLM 118
I+ + +V V++DF+A WC PCK++ P E I + G KV KVDVD
Sbjct: 19 VISS-YDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQ 77
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEEL 156
+ +A + + ++P + K+G++ D VG S L+
Sbjct: 78 SQIAQEVGIRAMPTFVFFKNGQKIDTVVGADPSKLQAA 115
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 99.7 bits (249), Expect = 8e-28
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 60 QITDQKEFEAKVKQA-STPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
QI + F+ + A V+VDF A WC PCK++ P ++ E+ V +VDVD
Sbjct: 4 QIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDDC 62
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEEL 156
D+A + +V S+P K G++ F G K LE
Sbjct: 63 QDVASESEVKSMPTFQFFKKGQKVGEFSGANKEKLEAT 100
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule,
electron transport; 1.51A {Streptomyces coelicolor}
Length = 112
Score = 99.7 bits (249), Expect = 9e-28
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
+TD FE V + PV+VDF+A WC PC+ +AP LEAI K+++ K+++D
Sbjct: 9 HVTDD-SFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENP 67
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEE-LEAFVTN 162
A Y V S+P L + G VG + K+ + LE F+ +
Sbjct: 68 GTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFIAD 112
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 99.8 bits (249), Expect = 1e-27
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 3/104 (2%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
+ ++F + + + F A WC PCK + +E I V+ AKVD D +
Sbjct: 23 DVYSVEQFRNIMSE-DILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNS 80
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEE-LEAFVTN 162
++ +V +P I + G+ +G L + L + +
Sbjct: 81 EIVSKCRVLQLPTFIIARSGKMLGHVIGANPGMLRQKLRDIIKD 124
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP:
c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Length = 105
Score = 99.2 bits (248), Expect = 1e-27
Identities = 30/97 (30%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
+ D ++ V ++ PV+VDF+A WC PCKL+AP ++ + + +GK+ + K++ D
Sbjct: 4 DVNDS-SWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAP 62
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEE 155
+A Y + S+P ++ K+G ++ +G KS L +
Sbjct: 63 GIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTD 99
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 99.3 bits (248), Expect = 1e-27
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Query: 60 QITDQKEFEAKVKQAST--PVIVDFFAKWCDPCKLMAPCLEAI-VERMNGKVQLAKVDVD 116
+I DQ++F A+ +++ F W +PCK + EAI E N V +D D
Sbjct: 4 EINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDAD 63
Query: 117 LMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEEL 156
++++ +++S+VP I + G G L
Sbjct: 64 ENSEISELFEISAVPYFIIIHKGTILKELSGADPKEYVSL 103
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic
thioredoxin, oxidoreductase; NMR {Chlamydomonas
reinhardtii} SCOP: c.47.1.1
Length = 107
Score = 99.3 bits (248), Expect = 1e-27
Identities = 28/97 (28%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
+ D F+ V ++S PV+VDF+A WC PC+++AP ++ I K++ K++ D
Sbjct: 5 AVNDD-TFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESP 63
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEE 155
++A +Y + S+P ++ K G++ + +G K+ + +
Sbjct: 64 NVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQ 100
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A
{Acetobacter aceti}
Length = 107
Score = 98.9 bits (247), Expect = 2e-27
Identities = 39/97 (40%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
++D F+ V +AS V+VDF+A+WC PCK++ P L I + GKV +AKV++D
Sbjct: 6 AVSDS-SFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNP 64
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEE 155
+ YQV S+P L+ ++DG+ D+ VG KS L+
Sbjct: 65 ETPNAYQVRSIPTLMLVRDGKVIDKKVGALPKSQLKA 101
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 99.4 bits (248), Expect = 2e-27
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 51 PAEAPSTSFQITDQKEFEAKVKQA---STPVIVDFFAKWCDPCKLMAPCLEAIVERMNGK 107
A + + ++++A T V+VDF A WC PC+ +AP + +++
Sbjct: 11 MASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKL-PN 69
Query: 108 VQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEEL 156
V KVD D + +A D+ + ++P + +K+G+ D+ VG +K L+
Sbjct: 70 VLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQST 118
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 97.7 bits (244), Expect = 6e-27
Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
+ TDQ F A+ + V+ DF+A WC P K++AP LE + + M K+++ K+DVD
Sbjct: 5 KATDQ-SFSAET--SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQ 61
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEE-LEAFVTNAE 164
+ A Y V S+P L+ +KDG + VGF+ K L+E + +
Sbjct: 62 ETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKHLLEHH 108
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.82A {Thermus
thermophilus}
Length = 140
Score = 98.2 bits (245), Expect = 8e-27
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
+ ++ F +V + +VDFFA WC PC+L++P LE + G++++ KV+VD
Sbjct: 37 EADEK-GFAQEVAG-APLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHP 94
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEE 155
LA Y V SVP L+ + G +VG + LEE
Sbjct: 95 GLAARYGVRSVPTLVLFRRGAPVATWVGASPRRVLEE 131
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 97.5 bits (243), Expect = 8e-27
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 46 GNKTPPAEAPSTSFQITDQKEFEAKVKQAST---PVIVDFFAKWCDPCKLMAPCLEAIVE 102
A + + +++ ++++A+T V++DF A WC PC++MAP + +
Sbjct: 2 AASATAAAVAAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAK 61
Query: 103 RMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEEL 156
+ V KVDVD + +A + V ++P + MK+G +DR VG K L
Sbjct: 62 KFPNAV-FLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAK 114
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 97.4 bits (243), Expect = 8e-27
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 65 KEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMD 124
E + + IV F C CK M L+ R +V ++ VD + +L +
Sbjct: 9 TEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARA-PQVAISSVDSEARPELMKE 67
Query: 125 YQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEEL 156
VP L+ ++DG+ F G L+ L
Sbjct: 68 LGFERVPTLVFIRDGKVAKVFSGIMNPRELQAL 100
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 97.9 bits (244), Expect = 1e-26
Identities = 29/134 (21%), Positives = 62/134 (46%), Gaps = 5/134 (3%)
Query: 39 ATNTTPTGNKTPPAEAPSTSFQITDQKEFEAKVKQAST---PVIVDFFAKWCDPCKLMAP 95
N ++ A IT ++ ++ K+ +AS V+ +F A+WC P + +AP
Sbjct: 7 KRNHDADDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAP 66
Query: 96 CLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEE 155
+ E + +DVD ++D + +++ + P ++DG++ D+ VG K L +
Sbjct: 67 YYIELSENY-PSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHK 125
Query: 156 -LEAFVTNAEKPAE 168
+ A + + +
Sbjct: 126 KITAILDSLPPSDK 139
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport;
2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 97.0 bits (242), Expect = 1e-26
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Query: 60 QITDQKEFEAKVKQA-STPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
+ +F+ ++ A S +V F + C PC +AP ++ + + +VDV
Sbjct: 5 PVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY-PQAVFLEVDVHQC 63
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEEL 156
A +S+ P ++ D++ G LEE
Sbjct: 64 QGTAATNNISATPTFQFFRNKVRIDQYQGADAVGLEEK 101
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 96.4 bits (240), Expect = 3e-26
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 12/104 (11%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKV-------QLAK 112
IT + EF ++ I+ ++K C C P L + ++ + + +
Sbjct: 20 YITPE-EFRQLLQG---DAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGE 75
Query: 113 VDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEE 155
++ V P L+ K+GR D+ VG S E
Sbjct: 76 RELSAARLEMNKAGVEGTPTLVFYKEGRIVDKLVGATPWSLKVE 119
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox
enzymology, oxidoreductase, redox-active center,
transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A
2o85_A 2o89_A 2o87_A
Length = 106
Score = 95.5 bits (238), Expect = 4e-26
Identities = 42/97 (43%), Positives = 59/97 (60%), Gaps = 4/97 (4%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
++TD +F++KV+ +VDF+A C PCK++AP LE + GK + K+DVD
Sbjct: 7 KVTDA-DFDSKVESG--VQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENP 63
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEE 155
A Y+V S+P LI KDG+ D+ VGFQ K NL E
Sbjct: 64 STAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAE 100
>2yzu_A Thioredoxin; redox protein, electron transport, structural
genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Length = 109
Score = 95.1 bits (237), Expect = 5e-26
Identities = 41/106 (38%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
++TDQ F+ + V+VDF+A+WC PC+++AP LE I + GK+ +AK+DVD
Sbjct: 5 EVTDQ-NFD-ETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENP 62
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEE-LEAFVTNA 163
AM Y+V S+P +I KDG+ + VG Q K N + +E +
Sbjct: 63 KTAMRYRVMSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEKHLPAT 108
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP:
c.47.1.1
Length = 113
Score = 95.5 bits (238), Expect = 5e-26
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 60 QITDQKEFEAKVKQA---STPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVD 116
++ ++ ++VDF A WC PCK++AP + ++ V KVDVD
Sbjct: 8 ACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKF-PNVTFLKVDVD 66
Query: 117 LMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEEL 156
+ +A ++ V ++P I +KDG+ D+ VG K L L
Sbjct: 67 ELKAVAEEWNVEAMPTFIFLKDGKLVDKTVGADKDGLPTL 106
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 95.1 bits (237), Expect = 7e-26
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 55 PSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVD 114
P S +T + F KV Q T +VDF+A WC PC+ AP E + + GKV+ KVD
Sbjct: 2 PQASIDLTP-QTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVD 60
Query: 115 VDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKS--NLEELEAFVTNAEKPAET 169
+ + P + + R + Q + + + + A + + ++
Sbjct: 61 CQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQS 117
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 98.0 bits (244), Expect = 9e-26
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
+TD F+ V +A ++VDF+A+WC PCK++AP L+ I + GK+ +AK+++D
Sbjct: 16 HLTDD-SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 74
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEKPAETSEGV 173
A Y + +P L+ K+G VG + +L+ F+ + V
Sbjct: 75 GTAPKYGIRGIPTLLLFKNGEVAATKVGAL--SKGQLKEFLDANLAGSAMESTV 126
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A
{Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB:
1rqm_A 1quw_A 1nw2_A
Length = 105
Score = 94.3 bits (235), Expect = 9e-26
Identities = 38/97 (39%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
+TD F+ + Q PV+VDF+A WC PC++MAP LE E KV +AK++VD
Sbjct: 4 TLTDA-NFQ-QAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP 61
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEE 155
+ + + S+P LI K GR + +G+Q K LE
Sbjct: 62 ETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEA 98
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 95.2 bits (237), Expect = 1e-25
Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 61 ITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTD 120
+K E + P IVDF+A WC PCK++AP L+ + + +G++ + KVD + +
Sbjct: 24 YNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQE 83
Query: 121 LAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEE 155
LA + + S+P ++ + + + G K++ ++
Sbjct: 84 LAGAFGIRSIPSILFIPMEGKPEMAQGAMPKASFKK 119
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis}
PDB: 3hyp_A
Length = 141
Score = 94.9 bits (236), Expect = 2e-25
Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 36 NTTATNTTPTGNKTPPAEAPSTSFQITDQKEFEAKV-----------KQASTPVIVDFFA 84
T+ +T + + S + +T EF K+ P IVDF+A
Sbjct: 2 GTSENKSTTATDTVQAEKPQSGTIHLTRA-EFLKKIADYENHSKEWKYLGDKPAIVDFYA 60
Query: 85 KWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDR 144
WC PCK++AP LE + + GK+ + KV+VD +LA D+ + S+P + + E
Sbjct: 61 DWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIWFVPMKGEPQV 120
Query: 145 FVGFQ-KSNLEE 155
+G K L+
Sbjct: 121 NMGALSKEQLKG 132
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 94.8 bits (236), Expect = 2e-25
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
T + + K+ Q P+++DF+A WC PC+ AP GKV+ KV+ +
Sbjct: 42 NATAE-TLD-KLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEP 99
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEE 155
L+ +++ S+P ++ ++G+ D G K+ +
Sbjct: 100 ALSTRFRIRSIPTIMLYRNGKMIDMLNGAVPKAPFDN 136
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase,
structural genomics consortium, SGC; 2.00A {Plasmodium
falciparum}
Length = 133
Score = 94.1 bits (234), Expect = 2e-25
Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 4/104 (3%)
Query: 60 QITDQKEFEAKVKQAS-TPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
++ + + +++ F A WC PC + + + V L +DVD+
Sbjct: 24 ELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLN--YYYVTLVDIDVDIH 81
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVG-FQKSNLEELEAFVT 161
L + + ++P + + V + +N ++E
Sbjct: 82 PKLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGANQNDIEKAFQ 125
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 94.1 bits (234), Expect = 3e-25
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 5/108 (4%)
Query: 53 EAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAK 112
+FQ + E + + P I+ F C C M L + + GK +
Sbjct: 5 GIKQINFQSINVVENL-EEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYY 63
Query: 113 VDVDLM--TDLAMDYQVSSVPVLIRM-KDGREQDRFVGFQ-KSNLEEL 156
++ DLA Y + VP + + K+G + G K+N+E +
Sbjct: 64 ARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGLMRKNNIETI 111
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 93.2 bits (232), Expect = 3e-25
Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
+T++ F+ +V + + V+VD +A+WC PC L P + + E+ GK +++VD
Sbjct: 8 VLTEE-NFD-EVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQ 65
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEE 155
+A Y V ++P + +G+ D VG + LE
Sbjct: 66 KIADKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTLES 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 96.8 bits (241), Expect = 9e-25
Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 5/136 (3%)
Query: 54 APSTSFQITDQKEFEAKVKQAS--TPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLA 111
+ I + + +V + S TPV+ F+++ C + P LE++ + NG+ LA
Sbjct: 5 SVENIVNINES-NLQ-QVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILA 62
Query: 112 KVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEELEAFVTNAEKPAETS 170
K+D D +A + + ++P + ++G+ D F G Q + + L V E+
Sbjct: 63 KLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDXVLPREEELXAQ 122
Query: 171 EGVPSQTTNENAPAQP 186
+ + + A P
Sbjct: 123 QAMQLMQESNYTDALP 138
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 91.6 bits (228), Expect = 1e-24
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 60 QITDQKEFEAKVKQAST-PVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDL- 117
++ F VK A PV++D F +WC P K MAP E + E + K+D +
Sbjct: 9 EVNKD-TFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVI-FLKLDCNQE 66
Query: 118 MTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEEL 156
LA + + VP +K+ G + L E
Sbjct: 67 NKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEA 105
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 92.6 bits (230), Expect = 1e-24
Identities = 12/117 (10%), Positives = 35/117 (29%), Gaps = 4/117 (3%)
Query: 58 SFQITDQKEFEAKVKQAST-PVIVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAKVDV 115
+Q + + +K+ +++ + + ++ Q+A D+
Sbjct: 18 GWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADL 77
Query: 116 DLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNL-EELEAFVTNAEKPAETS 170
+ + + V P + DG+ + G + L + + V
Sbjct: 78 EQSEAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMRSIVDTPAAQETVQ 134
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 92.1 bits (229), Expect = 1e-24
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Query: 60 QITDQKEFEAKVKQAS-TPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDL- 117
++ F VK A PV++D F +WC PCK MAP E + E + K+D +
Sbjct: 22 EVNKD-TFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVI-FLKLDCNQE 79
Query: 118 MTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEEL 156
LA + + VP +K+ G + L E
Sbjct: 80 NKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEA 118
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 89.7 bits (223), Expect = 7e-24
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
+ + F+ + +VDF+A+WC PC ++AP +E + E +V K++ D
Sbjct: 3 HLDSK-NFD-SFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDY-PQVGFGKLNSDENP 59
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEE 155
D+A Y V S+P +I KDG D +G + +E
Sbjct: 60 DIAARYGVMSLPTVIFFKDGEPVDEIIGAVPREEIEI 96
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy,
IGE, conformational diversity, multispecficity,
redox-active center; 2.77A {Escherichia coli} SCOP:
c.47.1.1
Length = 123
Score = 88.3 bits (219), Expect = 4e-23
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 16/111 (14%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDP--------------CKLMAPCLEAIVERMN 105
+TD F+ V +A ++VDF+A+WC P CK++AP L+ I +
Sbjct: 7 HLTDD-SFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQ 65
Query: 106 GKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEE 155
GK+ +AK+++D A Y + +P L+ K+G VG K L+E
Sbjct: 66 GKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 116
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 137
Score = 86.4 bits (214), Expect = 3e-22
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
Query: 55 PSTSFQITDQKEFEAKVKQAS-TPVIVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQLAK 112
S + + K + ++++ IV+FFA W + C+ AP + + N + K
Sbjct: 5 SSGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGK 64
Query: 113 VDVDLMTDLAMDYQVS------SVPVLIRMKDGREQDRFVGFQ-KSNLEE 155
VDV TD++ Y+VS +P LI + G+E R K
Sbjct: 65 VDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEAMRRPQIDKKGRAVS 114
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 85.9 bits (213), Expect = 3e-22
Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 63 DQKEFEAKVKQAS--TPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTD 120
++ +V A VI+ + C L+ L + + + + K V+
Sbjct: 9 SGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKF-PETKFVKAIVN---S 64
Query: 121 LAMDYQVSSVPVLIRMKDGREQDRFVGFQKS-----NLEELEAF 159
Y + +P + K+G+ + +F+G + LEELE
Sbjct: 65 CIQHYHDNCLPTIFVYKNGQIEAKFIGIIECGGINLKLEELEWK 108
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 84.5 bits (209), Expect = 1e-21
Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 63 DQKEFEAKVKQAS--TPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTD 120
++ +V A V++ + C ++ L + + + + K V+
Sbjct: 16 SGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKF-PETKFVKAIVN---S 71
Query: 121 LAMDYQVSSVPVLIRMKDGREQDRFVGFQKS-----NLEELEAF 159
Y + +P + K+G+ + +F+G + LEELE
Sbjct: 72 CIEHYHDNCLPTIFVYKNGQIEGKFIGIIECGGINLKLEELEWK 115
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 82.7 bits (205), Expect = 2e-21
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 75 STPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLI 134
S I F + C C +E + M V++ ++V AM+Y + +VP ++
Sbjct: 2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIV 61
Query: 135 RMKDGREQDRFVGFQ-KSNLEE 155
D F+G K L E
Sbjct: 62 INGDV----EFIGAPTKEALVE 79
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens}
PDB: 1xbs_A
Length = 149
Score = 81.9 bits (202), Expect = 2e-20
Identities = 16/107 (14%), Positives = 38/107 (35%), Gaps = 6/107 (5%)
Query: 60 QITDQKEFEAKVKQAST-PVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
++T +KE + +K + +++ F C + L ++ + VDVD
Sbjct: 7 KLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQT 66
Query: 119 TDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSN-----LEELEAFV 160
+ +S +P + +G+ G + + F+
Sbjct: 67 AVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFI 113
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2,
protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 81.0 bits (200), Expect = 3e-20
Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 10/123 (8%)
Query: 52 AEAPSTSFQITDQ--KEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCL---EAIVERMNG 106
+ A + + E + + + VD F WC PCK ++ + + + N
Sbjct: 2 SLAQADGIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNR 61
Query: 107 KVQLAKVDVDLM--TDLAMDYQVSSVPVLIRMK-DGREQDRFVGFQKSNLEELEAFVTNA 163
K+D++ +L Y V + P L+ + G R VG + + EL V
Sbjct: 62 HFVNLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDA--PELLKKVKLG 119
Query: 164 EKP 166
+
Sbjct: 120 VES 122
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 73.6 bits (181), Expect = 2e-17
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 11/132 (8%)
Query: 52 AEAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERM----NGK 107
+ + ++TD F+ V + +V+F+A WC CK + P A + GK
Sbjct: 3 SGSSGDVIELTD-DSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGK 61
Query: 108 VQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEK-- 165
V+LA VD + LA Y + P + + G + G + ++ + +
Sbjct: 62 VKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRT--RSDIVSRALDLFSDN 119
Query: 166 --PAETSEGVPS 175
P E E PS
Sbjct: 120 APPPELLESGPS 131
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.47.1.1
Length = 85
Score = 70.8 bits (174), Expect = 8e-17
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMK 137
I F + C C + ++ + K+ + K+D+ + + A++Y + +VP +
Sbjct: 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAI--AI 61
Query: 138 DGREQDRFVGFQKSNLEELEAFV 160
+G RFVG + EEL +
Sbjct: 62 NG--VVRFVGAP--SREELFEAI 80
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 76.7 bits (188), Expect = 8e-17
Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 2/130 (1%)
Query: 51 PAEAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQL 110
P S +T + F KV Q T +VDF+A W P + AP E + + GKV+
Sbjct: 652 LGFLPQASIDLTP-QTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRA 710
Query: 111 AKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEKPAETS 170
KVD + + P + + R + Q ++ + + ET
Sbjct: 711 GKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINS-RDAKTIAALIYGKLETL 769
Query: 171 EGVPSQTTNE 180
+ + +E
Sbjct: 770 QSQVKRNKDE 779
Score = 66.7 bits (162), Expect = 2e-13
Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 72 KQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVP 131
P +VDFFA W P + + P L + G++++ +D + L Y + + P
Sbjct: 452 ASDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYP 511
Query: 132 VLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEKPA 167
+ + + G + E++ F+ + P+
Sbjct: 512 TTVVFNQSSIHE-YEG--HHSAEQILEFIEDLRNPS 544
Score = 65.5 bits (159), Expect = 6e-13
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
Query: 77 PVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRM 136
V+F++ +AP + ++G +++ V+ L V+S P L
Sbjct: 135 LWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIF 194
Query: 137 KDGREQDRFVGFQKSNLEELEAFVTNAEKPA 167
+ G ++ G + E L AF +
Sbjct: 195 RSGMAAVKYNG--DRSKESLVAFAMQHVRST 223
Score = 61.3 bits (148), Expect = 2e-11
Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 5/110 (4%)
Query: 63 DQKEFEAKVKQ--ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTD 120
F VKQ +VDF++ W P +++ P + + + G + + VD
Sbjct: 549 TPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCGQYHS 608
Query: 121 LAMDYQVSSVP-VLIRMKDGREQDRFVGFQKSNLEE--LEAFVTNAEKPA 167
V P + + + ++ + N + L ++ A
Sbjct: 609 FCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQA 658
Score = 46.7 bits (110), Expect = 2e-06
Identities = 16/131 (12%), Positives = 39/131 (29%), Gaps = 6/131 (4%)
Query: 53 EAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLE--AIVERMNGKVQL 110
ST +++ F ++ + V + +C + + ++G V +
Sbjct: 219 HVRSTVTELST-GNFVNAIET-AFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNV 276
Query: 111 AKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQK--SNLEELEAFVTNAEKPAE 168
VD D L ++ DR ++L+ E ++ +
Sbjct: 277 GWVDCDAQDSLCKSLDTTASTTAYFPPGATLNDREKSSVLFLNSLDAKEIYMEIIHNLPD 336
Query: 169 TSEGVPSQTTN 179
+Q +
Sbjct: 337 FELLSANQLED 347
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 73.6 bits (180), Expect = 2e-16
Identities = 15/108 (13%), Positives = 38/108 (35%), Gaps = 9/108 (8%)
Query: 59 FQITDQKEFEAKVKQAS--TPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVD 116
+++ ++F +++ T ++V + C + L + V+ K+
Sbjct: 115 YELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAE-YPMVKFCKIKAS 173
Query: 117 LMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKS-----NLEELEAF 159
T + +P L+ K G F+ + ++E+F
Sbjct: 174 -NTGAGDRFSSDVLPTLLVYKGGELLSNFISVTEQLAEEFFTGDVESF 220
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 69.3 bits (170), Expect = 1e-15
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 10/101 (9%)
Query: 63 DQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLA 122
F +V Q+ +V+F+A WC C+ + P + + V++ V+ D L
Sbjct: 23 TPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLG 82
Query: 123 MDYQVSSVPVLIRMKDG----------REQDRFVGFQKSNL 153
Y V P + R + V S L
Sbjct: 83 GQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSAL 123
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 68.5 bits (167), Expect = 1e-14
Identities = 16/108 (14%), Positives = 40/108 (37%), Gaps = 9/108 (8%)
Query: 59 FQITDQKEFEAKVKQAS--TPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVD 116
+++ ++F +++ T ++V+ + C + LE + V+ K+
Sbjct: 102 YELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAE-YPMVKFCKIRAS 160
Query: 117 LMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKS-----NLEELEAF 159
T + +P L+ K G F+ + ++E+F
Sbjct: 161 -NTGAGDRFSSDVLPTLLVYKGGELISNFISVAEQFAEDFFAADVESF 207
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 68.7 bits (168), Expect = 1e-14
Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 9/137 (6%)
Query: 49 TPPAEAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGK- 107
+ + + D F+ V V+++F+A WC CK AP E I + K
Sbjct: 8 DLEVKEENGVLVLND-ANFDNFVAD-KDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKD 65
Query: 108 --VQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEK 165
+ +AK+D + LA + VS P + +K G+ D + G EE+ A V +
Sbjct: 66 PPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQAVD-YEG--SRTQEEIVAKVREVSQ 122
Query: 166 PAE-TSEGVPSQTTNEN 181
P V T EN
Sbjct: 123 PDWTPPPEVTLVLTKEN 139
Score = 66.4 bits (162), Expect = 7e-14
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 50 PPAEAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGK-- 107
P P + ++ F+ V A ++V+F+A WC CK +AP E + ++ +
Sbjct: 123 PDWTPPPEVTLVLTKENFDEVVNDAD-IILVEFYAPWCGHCKKLAPEYEKAAKELSKRSP 181
Query: 108 -VQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEKP 166
+ LAKVD TDLA + VS P L + GR D + G + ++
Sbjct: 182 PIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPYD-YNG--PREKYGIVDYMIEQSGA 238
Query: 167 AET 169
A +
Sbjct: 239 AAS 241
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 66.4 bits (162), Expect = 1e-14
Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 14/126 (11%)
Query: 49 TPPAEAPSTSFQITDQKEFEAKVKQAS-TPVIVDFFAKWCDPCKLMAPC---LEAIVERM 104
T + QI E + +A PV++D +A WC CK + + +
Sbjct: 4 TAQTQTHLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKAL 63
Query: 105 NGKVQLAKVDVDLMTD----LAMDYQVSSVPVLIRM-KDGRE--QDRFVGFQKSNLEELE 157
V L + +V L V +P ++ G+E Q R GF + E
Sbjct: 64 ADTVLL-QANVTANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFM--DAETFS 120
Query: 158 AFVTNA 163
A + +
Sbjct: 121 AHLRDR 126
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 65.0 bits (159), Expect = 3e-14
Identities = 25/118 (21%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 51 PAEAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG-KVQ 109
+ + ITD + + ++ +++F+A WC C+ + P E+ E +V
Sbjct: 2 SSGSSGNVRVITD-ENWRELLEG---DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVN 57
Query: 110 LAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEKPA 167
+AKVDV L+ + ++++P + KDG + + G + ++ F+++ E +
Sbjct: 58 IAKVDVTEQPGLSGRFIINALPTIYHCKDGEFRR-YQGPRT--KKDFINFISDKEWKS 112
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 67.0 bits (163), Expect = 4e-14
Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 7/103 (6%)
Query: 66 EFEAKVKQASTPV-IVDFFAKWCDPCKLMAPCLEAI----VERMNGKVQLAKVDVDLMTD 120
E + ++ V I+ F C C L + GK+ V+ +
Sbjct: 124 ETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE 183
Query: 121 LAMDYQVSSVPVLIRMKDGREQDRFVGFQKSN--LEELEAFVT 161
A Y V +VP ++ +G ++ F G LE+L + ++
Sbjct: 184 WADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSALS 226
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 63.6 bits (155), Expect = 2e-13
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 10/136 (7%)
Query: 50 PPAEAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG--- 106
+ + + + D F+ V V+++F+A WC CK AP E I +
Sbjct: 11 LEVKEENGVWVLND-GNFDNFVAD-KDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDP 68
Query: 107 KVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEKP 166
+ +AK+D + LA + VS P + +K G+ D + G + EE+ A V +P
Sbjct: 69 PIAVAKIDATSASMLASKFDVSGYPTIKILKKGQAVD-YDGSRT--QEEIVAKVREVSQP 125
Query: 167 AETSEGVPSQTTNENA 182
P T+ ++
Sbjct: 126 D--WTPPPEVTSGPSS 139
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 65.6 bits (159), Expect = 5e-13
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 63 DQKEFEAKVKQ--ASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTD 120
FE+++ ++ ++V+FFA WC K +AP EA R+ G V LAKVD T+
Sbjct: 7 TDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTN 66
Query: 121 LAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEKPAET 169
Y VS P L +DG E + G + + + + PA
Sbjct: 67 TCNKYGVSGYPTLKIFRDGEEAGAYDG--PRTADGIVSHLKKQAGPASV 113
Score = 57.2 bits (137), Expect = 3e-10
Identities = 26/140 (18%), Positives = 57/140 (40%), Gaps = 6/140 (4%)
Query: 41 NTTPTGNKTPPAEAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAI 100
N P E+ ++ + F+ V + V+++F+A WC CK + P + +
Sbjct: 336 NLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKEL 395
Query: 101 VERM--NGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQ-KSNLEELE 157
E++ + + +AK+D D+ Y+V P + ++ ++ L +
Sbjct: 396 GEKLSKDPNIVIAKMDATA-NDVPSPYEVRGFPTIYFSPAN-KKLNPKKYEGGRELSDFI 453
Query: 158 AFV-TNAEKPAETSEGVPSQ 176
+++ A P E P +
Sbjct: 454 SYLQREATNPPVIQEEKPKK 473
Score = 31.0 bits (69), Expect = 0.26
Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 12/115 (10%)
Query: 53 EAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAK 112
+A S + ++EF+ K IV FF + + A
Sbjct: 107 QAGPASVPLRTEEEFK-KFISDKDASIVGFFDDSFSEAH---SEFLKAASNLRDNYRFAH 162
Query: 113 VDVDLMTDLAMDYQVSSVPVLIRMKDGR-----EQDRFVGFQKSNLEELEAFVTN 162
+V+ L +Y + +++ ++ QK +++ F+
Sbjct: 163 TNVE---SLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQE 214
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 61.2 bits (149), Expect = 1e-12
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 65 KEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG--KVQLAKVDVDLMTDLA 122
K F+A V V+++F+A WC CK + P ++ ++ G + +AK+D
Sbjct: 15 KTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITN 74
Query: 123 MDYQVSSVPVLIRMKDGREQDRFVGFQKS-NLEELEAFVT-NAEKPAETSEGVPSQTT 178
Y+V P + G +++ + +LE L F+ +A K + T E + ++
Sbjct: 75 DQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRSRTKEELSGPSS 132
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 60.4 bits (147), Expect = 1e-12
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 63 DQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERM---NGKVQLAKVDVDLMT 119
+ F+ + + + F+A WC CK +AP E + ++ V++A+VD
Sbjct: 11 TENNFDDTIAE--GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAER 68
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTN 162
++ Y V P L+ + G++ G + L+ L FV +
Sbjct: 69 NICSKYSVRGYPTLLLFRGGKKVSEHSGGRD--LDSLHRFVLS 109
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP:
c.47.1.1
Length = 118
Score = 60.8 bits (147), Expect = 1e-12
Identities = 16/108 (14%), Positives = 36/108 (33%), Gaps = 7/108 (6%)
Query: 57 TSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQL----AK 112
++T + + + T K C C+ A L +V +
Sbjct: 12 KDLEVTTVVRAQEALDKKET-ATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEP 70
Query: 113 VDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFV 160
++ + Y + +VP + + DG+ R + +E++ F
Sbjct: 71 SQLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSA--QEIKDFA 116
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 59.7 bits (145), Expect = 3e-12
Identities = 19/119 (15%), Positives = 35/119 (29%), Gaps = 17/119 (14%)
Query: 50 PPAEAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG--- 106
E PS ++TD + F++ V V V ++ W + + +
Sbjct: 9 NDGERPSRVVELTD-ETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRN 67
Query: 107 --KVQLAKVDVDLMTDLAMDYQVSSVPVL-----------IRMKDGREQDRFVGFQKSN 152
A++D + D+ +VS P + R F N
Sbjct: 68 HLTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN 126
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 62.1 bits (150), Expect = 5e-12
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Query: 63 DQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM--TD 120
K F+ + + +V+F+A WC CK ++ +R++G VQ+A V+ DL
Sbjct: 23 TPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKA 82
Query: 121 LAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEA 158
L Y V+ P L+ + + A
Sbjct: 83 LCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHA 120
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD,
structural genomics, protein structure initiative; 1.80A
{Rhodopseudomonas palustris}
Length = 137
Score = 59.3 bits (143), Expect = 8e-12
Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 4/115 (3%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKW--CDPCKLMAPCLEAIVERMNGKVQLAKVDVD 116
+ D+ + + + V++ F +A L ++ G++ A+V +
Sbjct: 17 PTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAE 76
Query: 117 LMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSN--LEELEAFVTNAEKPAET 169
L + V+ P L ++ R Q + L ++ A + ++P E
Sbjct: 77 AERGLMARFGVAVCPSLAVVQPERTLGVIAKIQDWSSYLAQIGAMLAEVDQPGEA 131
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP:
c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 60.6 bits (146), Expect = 2e-11
Identities = 29/134 (21%), Positives = 46/134 (34%), Gaps = 14/134 (10%)
Query: 50 PPAEAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERM-NGKV 108
A S ++ F ++ V+ +FFA WC CK MAP E + +
Sbjct: 8 AVAPEDSAVVKLAT-DSFNEYIQSHDL-VLAEFFAPWCGHCKNMAPEYVKAAETLVEKNI 65
Query: 109 QLAKVDVDLMTDLAMDYQVSSVPVLIRMKDG-----------REQDRFVGFQKSNLEELE 157
LA++D DL M++ + P L K+ R + V F +
Sbjct: 66 TLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAV 125
Query: 158 AFVTNAEKPAETSE 171
A V +
Sbjct: 126 AVVADLPAYLANET 139
Score = 57.6 bits (138), Expect = 3e-10
Identities = 26/145 (17%), Positives = 46/145 (31%), Gaps = 16/145 (11%)
Query: 41 NTTPTGNKTPPAEAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAI 100
+ +P E +S K + V V+V ++A WC CK +AP + +
Sbjct: 342 DASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQEL 401
Query: 101 VERM---NGKVQLAKVDVDLMTDLAMDYQVSSVPVL-----------IRMKDGREQDRFV 146
+ V +AK+D + + P + + + R D
Sbjct: 402 ADTYANATSDVLIAKLDHT--ENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLF 459
Query: 147 GFQKSNLEELEAFVTNAEKPAETSE 171
F K N E+ E +
Sbjct: 460 DFIKENGHFDVDGKALYEEAQEKAA 484
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 56.9 bits (138), Expect = 3e-11
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 17/117 (14%)
Query: 53 EAPSTSFQIT--DQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG---K 107
+AP + + F + ++V+F+A WC CK +AP ++ +
Sbjct: 1 DAPEEEDHVLVLRKSNFAEALAAHK-YLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSE 59
Query: 108 VQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDG-----------REQDRFVGFQKSNL 153
++LAKVD +DLA Y V P + ++G RE D V + K
Sbjct: 60 IRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRT 116
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 57.2 bits (138), Expect = 1e-10
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 76 TPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIR 135
V+F++ C C +AP + ++G +++ V+ L V+S P L
Sbjct: 115 ELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFI 174
Query: 136 MKDGREQDRFVGFQKSNLEELEAFVTN 162
+ G ++ G + E L AF
Sbjct: 175 FRSGMAAVKYNG--DRSKESLVAFAMQ 199
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 58.8 bits (141), Expect = 1e-10
Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 5/122 (4%)
Query: 63 DQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG---KVQLAKVDVDLMT 119
D V +S+ V+FFA WC AP + + + + LA +D T
Sbjct: 18 DADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEET 77
Query: 120 D--LAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEKPAETSEGVPSQT 177
+ + ++ ++ P + + + + + + + P
Sbjct: 78 NSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHRDTWPPAC 137
Query: 178 TN 179
Sbjct: 138 PP 139
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 57.8 bits (139), Expect = 2e-10
Identities = 20/130 (15%), Positives = 42/130 (32%), Gaps = 14/130 (10%)
Query: 46 GNKTPPAEAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAP-------CLE 98
G P + +T+ K F+ +K+ V+ ++ + K+ LE
Sbjct: 1 GLNFPTYDGKDRVVSLTE-KNFKQVLKK--YDVLCLYYHESVSSDKVAQKQFQLKEIVLE 57
Query: 99 AIVERM-NGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELE 157
+ + + + + VD LA L +K R + F + L
Sbjct: 58 LVAQVLEHKDIGFVMVDAKKEAKLAKKLGFDEEGSLYVLKGDRTIEFDGEFAA---DVLV 114
Query: 158 AFVTNAEKPA 167
F+ + +
Sbjct: 115 EFLLDLIEDP 124
Score = 33.9 bits (77), Expect = 0.020
Identities = 16/107 (14%), Positives = 28/107 (26%), Gaps = 7/107 (6%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMT 119
I + E +A + ++ FF E E ++
Sbjct: 127 IINSKLEVQAFERIEDQIKLIGFFK---SEESEYYKAFEEAAEHFQPYIKFFATFDK--- 180
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEKP 166
+A + V E + EEL FV ++P
Sbjct: 181 GVAKKLSLKMNEVDFYEPFMDEPIAIPD-KPYTEEELVEFVKEHQRP 226
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 55.1 bits (133), Expect = 2e-10
Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 14/118 (11%)
Query: 65 KEFEAKVKQAST---PVIVDFFAKWCDPCKLMAPCL---EAIVERMNGKVQLAKVDVDLM 118
+ + A V+V F ++ C C+ M + + + + +A V VD
Sbjct: 6 YPYPEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTP 65
Query: 119 TD--LAMDYQVSSVPVLIRM-KDGREQD---RFVGFQKSN--LEELEAFVTNAEKPAE 168
LA Y+V P + + + R G + L+EL E
Sbjct: 66 EGQELARRYRVPGTPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKELRQVCVKGGACGE 123
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase,
PSI-II, structural genomics, protein structure
initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 55.4 bits (134), Expect = 3e-10
Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 26/109 (23%)
Query: 77 PVIVDFFAKWCDPCKLMAPCLEAIVERMNGK-VQLAKVDV-------------------- 115
V +DF+A WC PC+ P + + + K Q+ V++
Sbjct: 30 VVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTV 89
Query: 116 --DLMTDLAMDYQVSSVP--VLIRMKDGREQDRFVGFQKSNLEELEAFV 160
D Y V +P LI ++G+ + VGF+ ++ E LE +
Sbjct: 90 AFDPKGQTPRLYGVKGMPTSFLID-RNGKVLLQHVGFRPADKEALEQQI 137
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 56.1 bits (135), Expect = 6e-10
Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 9/122 (7%)
Query: 52 AEAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERM------N 105
S + + + + A +V+F+A WC +++ P E + +
Sbjct: 1 GPLGSEITSLDT-ENIDEILNNAD-VALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNE 58
Query: 106 GKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEK 165
+V A+VD D +D+A Y++S P L ++G R Q+S ++ L ++ +
Sbjct: 59 NQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRS-VKALADYIRQQKS 117
Query: 166 PA 167
Sbjct: 118 DP 119
Score = 34.6 bits (79), Expect = 0.016
Identities = 12/114 (10%), Positives = 32/114 (28%), Gaps = 9/114 (7%)
Query: 53 EAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAK 112
+ +I D E + S I+ +F + E + ++
Sbjct: 115 QKSDPIQEIRDLAEITTLDR--SKRNIIGYFEQKDSD---NYRVFERVANILHDDCAFLS 169
Query: 113 VDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEKP 166
D++ + S ++ + D +N + ++ + P
Sbjct: 170 AFG----DVSKPERYSGDNIIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCVP 219
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 55.8 bits (134), Expect = 9e-10
Identities = 28/125 (22%), Positives = 42/125 (33%), Gaps = 16/125 (12%)
Query: 43 TPTGNKTPPAEAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVE 102
+ P + K FE V V+F+A WC CK +AP + + E
Sbjct: 236 HLMSQELPEDWDKQPVKVLVG-KNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGE 294
Query: 103 RMNG--KVQLAKVDVDLMTDLAMDYQVSSVPVL-----------IRMKDGREQDRFVGFQ 149
+ +AK+D + +V S P L I R D F F
Sbjct: 295 TYKDHENIVIAKMDST--ANEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFL 352
Query: 150 KSNLE 154
+S +
Sbjct: 353 ESGGQ 357
Score = 36.6 bits (84), Expect = 0.003
Identities = 11/109 (10%), Positives = 25/109 (22%), Gaps = 5/109 (4%)
Query: 59 FQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
++ I+ F K + E GK+ +D D
Sbjct: 119 VIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHT 178
Query: 119 T--DLAMDYQVSSVP---VLIRMKDGREQDRFVGFQKSNLEELEAFVTN 162
+ + + V + + ++ E + F
Sbjct: 179 DNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHR 227
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 55.4 bits (132), Expect = 1e-09
Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 10/118 (8%)
Query: 63 DQKEFEAKVKQAS-TPVIVDFFAKWCDPCKLMAPCLEAIVERMNGK--------VQLAKV 113
+F + A P IV F+ C C+ A + + A V
Sbjct: 29 SGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAV 88
Query: 114 DVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEKPAETSE 171
+ DL Y ++ VP L R+ R ++ E AF + + E
Sbjct: 89 NCASEVDLCRKYDINFVPRL-FFFYPRDSCRSNEECGTSSLEHVAFENSHLEVDELES 145
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A
{Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Length = 123
Score = 52.4 bits (125), Expect = 2e-09
Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 18/112 (16%)
Query: 66 EFEAKVKQASTPVIVDFFA--------KWCDPCKLMAPCLEAIVERMNGKVQLAKVDV-- 115
EF V+Q + I +F WC C P + ++ ++ V
Sbjct: 14 EFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGE 73
Query: 116 -----DLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTN 162
D D + +V++VP L++ + + V + +E +
Sbjct: 74 KPYWKDPNNDFRKNLKVTAVPTLLKYGTPQ---KLVESECLQANLVEMLFSE 122
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 52.3 bits (126), Expect = 3e-09
Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 28/122 (22%)
Query: 77 PVIVDFFAKWCDPCKLMAPCLEAIVERMNGK-VQLAKVDV-------------------- 115
VIV+F+A WC PC+ P + + M GK ++ V +
Sbjct: 30 VVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLP 89
Query: 116 ---DLMTDLAMDYQVSSVP--VLIRMKDGREQDRFVGFQKSNLEELEAFVTNA-EKPAET 169
D + Y + VP +I + G + VG + + E+ AF+ N K E
Sbjct: 90 VLLDADKRVGKLYGTTGVPETFVID-RHGVILKKVVGAMEWDHPEVIAFLNNELSKAREG 148
Query: 170 SE 171
Sbjct: 149 HH 150
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive methylation;
HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 53.5 bits (128), Expect = 3e-09
Identities = 24/126 (19%), Positives = 39/126 (30%), Gaps = 18/126 (14%)
Query: 63 DQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG---KVQLAKVDVDLMT 119
V + + V+FFA WC C AP A+ E + + LA +D T
Sbjct: 18 QADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEET 77
Query: 120 D--LAMDYQVSSVPVL-------------IRMKDGREQDRFVGFQKSNLEELEAFVTNAE 164
+ + D+ + P + + G + LE A
Sbjct: 78 NSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESHHDTWPPAC 137
Query: 165 KPAETS 170
P E +
Sbjct: 138 PPLEPA 143
Score = 35.7 bits (82), Expect = 0.004
Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 8/88 (9%)
Query: 47 NKTPPAEAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNG 106
+ PPA P + + F A+ + + F + +A L +
Sbjct: 131 DTWPPACPPLEPAXLEEIDGFFARNN--EEYLALIFEXGGSYLAREVALDLS-----QHK 183
Query: 107 KVQLAKVDVDLMTDLAMDYQVSSVPVLI 134
V + +V ++ + V+ P
Sbjct: 184 GVAVRRVLNT-EANVVRKFGVTDFPSCY 210
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural
genomics, PSI-2, protein structure initiative; 1.77A
{Geobacter metallireducens gs-15}
Length = 158
Score = 52.3 bits (126), Expect = 4e-09
Identities = 17/106 (16%), Positives = 42/106 (39%), Gaps = 23/106 (21%)
Query: 77 PVIVDFFAKWCDPCKLMAPCLEAIVERMNGK-VQLAKVDV-------------------D 116
V+V+F+A WC C+ P ++ +V+ + + V+V D
Sbjct: 43 IVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSD 102
Query: 117 LMTDLAMDYQVSSVP--VLIRMKDGREQDRFVGFQKSNLEELEAFV 160
+ Y + +P ++ + G + R G + + ++ +++
Sbjct: 103 ATGQVQQRYGANRLPDTFIVD-RKGIIRQRVTGGIEWDAPKVVSYL 147
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul
structural genomics, PSI-2, protein structure
initiative; 1.30A {Xylella fastidiosa}
Length = 133
Score = 51.1 bits (122), Expect = 6e-09
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 9/96 (9%)
Query: 62 TDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLE--AIVERMNGKVQLAKVDV---D 116
T K+ A K+ P ++ F A WC C+ + L + ++ K+DV D
Sbjct: 16 TQVKKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFD 75
Query: 117 LMTDLAMDYQVSSVP----VLIRMKDGREQDRFVGF 148
+L+ Y V++ DG+ + G
Sbjct: 76 RNLELSQAYGDPIQDGIPAVVVVNSDGKVRYTTKGG 111
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 50.5 bits (121), Expect = 8e-09
Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 20/118 (16%)
Query: 51 PAEAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERM-----N 105
P + + K + V + V+++F+A WC CK +AP E +
Sbjct: 2 PLGSEGPVTVVVA-KNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFK 60
Query: 106 GKVQLAKVDVDLMTDLAMDYQVSSVPVL-----------IRMKDGREQDRFVGFQKSN 152
+V +AKVD T + ++ P + + R + + F N
Sbjct: 61 DRVVIAKVD---ATANDVPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAEN 115
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project protein structural and
functional analyses; 2.30A {Aquifex aeolicus} PDB:
2ayt_A
Length = 229
Score = 51.6 bits (123), Expect = 2e-08
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 12/121 (9%)
Query: 67 FEAKVKQASTPVIVDFF--AKWCDPCKLMAPCLEAIVERMNG-----KVQLAKVDVDLMT 119
+ + K+ PV + F A C+ C+ L+ VE + K++L
Sbjct: 15 AQKEFKE---PVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHK 71
Query: 120 DLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEKPAETSEGVPSQTTN 179
+ Y V VP ++ D R++G E + ++ + +T
Sbjct: 72 EETEKYGVDRVPTIVIEGDKDYGIRYIGLP--AGLEFTTLINGIFHVSQRKPQLSEKTLE 129
Query: 180 E 180
Sbjct: 130 L 130
Score = 48.1 bits (114), Expect = 2e-07
Identities = 20/118 (16%), Positives = 32/118 (27%), Gaps = 6/118 (5%)
Query: 55 PSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVD 114
S +K E I F C C A N + +D
Sbjct: 116 VSQRKPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALA-NDYITSKVID 174
Query: 115 VDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEKPAETSEG 172
DLA +QV VP ++ + FVG ++ + + +
Sbjct: 175 ASENQDLAEQFQVVGVPKIVI---NKGVAEFVG--AQPENAFLGYIMAVYEKLKREKE 227
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 50.1 bits (119), Expect = 3e-08
Identities = 20/157 (12%), Positives = 44/157 (28%), Gaps = 15/157 (9%)
Query: 38 TATNTTPTGNKTPPAEAPSTSFQITDQ---KEFEAKVKQAST---PVIVDFFAKWCDPCK 91
+ + G + D + E K+A+ P++V WC CK
Sbjct: 3 GSHHHHHHGMASSSDGHNGLGKGFGDHIHWRTLEDGKKEAAASGLPLMVIIHKSWCGACK 62
Query: 92 LMAPCLEAI--VERMNGKVQLAKVDVDLMTDL-AMDYQVSSVP-VLIRMKDGREQDRFVG 147
+ P + ++ + ++ + +P +L G+ +
Sbjct: 63 ALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHPEIIN 122
Query: 148 FQ-----KSNLEELEAFVTNAEKPAETSEGVPSQTTN 179
K E V ++ E G + +
Sbjct: 123 ENGNPSYKYFYVSAEQVVQGMKEAQERLTGDAFRKKH 159
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 50.8 bits (121), Expect = 4e-08
Identities = 13/112 (11%), Positives = 35/112 (31%), Gaps = 11/112 (9%)
Query: 63 DQKEFEAKVKQASTPVIVDFFAKWCDPCK------LMAPCLEAIVERM-NGKVQLAKVDV 115
+ K ++ K+ + + + D + LE + + + V VD
Sbjct: 19 NAKNYKNVFKK-YEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDS 77
Query: 116 DLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEKPA 167
+ +A ++ + K+ + F + L F+ + +
Sbjct: 78 EKDAAVAKKLGLTEEDSIYVFKEDEVIEYDGEFSA---DTLVEFLLDVLEDP 126
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 48.5 bits (115), Expect = 4e-08
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 6/99 (6%)
Query: 72 KQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMN--GKVQLAKVDVD--LMTDLAMDYQV 127
+ ++ F C C + + + ++ + L L + V
Sbjct: 15 DDKAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPV 74
Query: 128 SSVPVLIRMKDGREQDRFVGFQKSNL--EELEAFVTNAE 164
+ P + M E R G+ + L + AE
Sbjct: 75 TFTPTFVLMAGDVESGRLEGYPGEDFFWPMLARLIGQAE 113
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like
fold, RESA-like fold, dithiol, STOA, redox-active
center; 2.50A {Bacillus subtilis}
Length = 145
Score = 48.5 bits (116), Expect = 7e-08
Identities = 22/138 (15%), Positives = 47/138 (34%), Gaps = 33/138 (23%)
Query: 51 PAEAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGK-VQ 109
PA + + ++ + I+ F+ WC PCK P ++ + V+
Sbjct: 12 PAVPAVFLMKTIEGEDI--SIPNKGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVK 69
Query: 110 LAKVDV-------------------------DLMTDLAMDYQVSSVP--VLIRMKDGREQ 142
L V++ D +L +Y + ++P L+ + G +
Sbjct: 70 LVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHIITIPTSFLLN-EKGEIE 128
Query: 143 DRFVGFQKSNLEELEAFV 160
+G E+L+ +
Sbjct: 129 KTKIGPM--TAEQLKEWT 144
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 48.0 bits (115), Expect = 1e-07
Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 30/128 (23%)
Query: 77 PVIVDFFAKWCDPCKLMAPCLEAIVERMNGK-VQLAKVDV-------------------- 115
V ++F+ WC+PCK P + + + V++ V+V
Sbjct: 28 GVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPV 87
Query: 116 --DLMTDLAMDYQVSSVP--VLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEKPAETSE 171
D + Y VS +P LI +G+ G + ++ N KP E +
Sbjct: 88 VLDTDRQVLDAYDVSPLPTTFLIN-PEGKVVKVVTGTM--TESMIHDYM-NLIKPGE-TS 142
Query: 172 GVPSQTTN 179
G+ +
Sbjct: 143 GLEHHHHH 150
>4evm_A Thioredoxin family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.51A
{Streptococcus pneumoniae}
Length = 138
Score = 47.3 bits (113), Expect = 2e-07
Identities = 22/114 (19%), Positives = 32/114 (28%), Gaps = 33/114 (28%)
Query: 77 PVIVDFFAKWCDPCKLMAPCLEAIVERMNGK-VQLAKVDVD------------------- 116
V + F+A WC C P + I + V L V
Sbjct: 24 KVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDY 83
Query: 117 -----LM---TDLAMDYQVSSVP--VLIRMKDGREQDRFVGFQKSNLEELEAFV 160
L+ L Y V S P I K+G+ GF + + +
Sbjct: 84 KNLPVLVDPSGKLLETYGVRSYPTQAFID-KEGKLVKTHPGF--MEKDAILQTL 134
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 48.8 bits (116), Expect = 2e-07
Identities = 26/213 (12%), Positives = 52/213 (24%), Gaps = 44/213 (20%)
Query: 11 KLTKSVHEMVSAKNKIIDINASQETNTTATNTTPTGNKTPPAEAPSTSFQITDQK----- 65
+ E ++ + NA + + P + + K
Sbjct: 19 SGAMEIREQLNLGGIVNAQNAQLSNCSDGAAQLESCGTAPDLKGITGWLNTPGNKPIDLK 78
Query: 66 EFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGK------VQLAKVDVDLMT 119
KV V++DF+A C C+ P + + V + + +
Sbjct: 79 SLRGKV------VLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVP 132
Query: 120 D----------------------LAMDYQVSSVP--VLIRMKDGREQDRFVGFQKSNLEE 155
+Y+ P LI G + G + +
Sbjct: 133 GNVAKGAANLGISYPIALDNNYATWTNYRNRYWPAEYLID-ATGTVRHIKFG--EGDYNV 189
Query: 156 LEAFVTNAEKPAETSEGVPSQTTNENAPAQPGN 188
E V A+ +P ++ P
Sbjct: 190 TETLVRQLLNDAKPGVKLPQPSSTTTPDLTPRA 222
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 46.5 bits (111), Expect = 3e-07
Identities = 20/108 (18%), Positives = 28/108 (25%), Gaps = 26/108 (24%)
Query: 77 PVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDV--------------------- 115
P ++ F+ WC C AP L + V +
Sbjct: 26 PAVLWFWTPWCPFCNAEAPSLSQVAAANPA-VTFVGIATRADVGAMQSFVSKYNLNFTNL 84
Query: 116 -DLMTDLAMDYQVSSVP--VLIRMKDGREQDRFVGFQKSNLEELEAFV 160
D + Y V P V R DG + +EL V
Sbjct: 85 NDADGVIWARYNVPWQPAFVFYR-ADGTSTFVNNPTAAMSQDELSGRV 131
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase; 1.60A
{Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Length = 164
Score = 46.3 bits (110), Expect = 6e-07
Identities = 29/159 (18%), Positives = 42/159 (26%), Gaps = 35/159 (22%)
Query: 39 ATNTTPTGNKTPPAEAPSTSFQITDQKEFEAKVKQAS-TPVIVDFFAKWCDPCKLMAPCL 97
++ +P A P T + A V P ++ F+A WC C
Sbjct: 1 GSHMSPKIVDAGTATVPHTMSTMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQA 60
Query: 98 EAIVERMNGK-VQLAKVDV----------------------------DLMTDLAMDYQVS 128
E + L V D +A + +S
Sbjct: 61 EKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNLNIS 120
Query: 129 SVP--VLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEK 165
P LI KDG Q G N + A + N
Sbjct: 121 VYPSWALIG-KDGDVQRIVKGSI--NEAQALALIRNPNA 156
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II,
structural genomics, protein structure initiative; 1.66A
{Chlorobaculum tepidum}
Length = 165
Score = 46.2 bits (110), Expect = 7e-07
Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 34/127 (26%)
Query: 77 PVIVDFFAKWCDPCKLMAPCLEAIVERMNGK-VQLAKVDVD------------------- 116
IV+FFA WC PC+ P + + + + + V+
Sbjct: 36 AYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPV 95
Query: 117 --------LMTDLAMDYQVSSVP--VLIRMKDGREQDRFVGFQKSNLEELEAFVTNA-EK 165
+ +D ++ +P +I G VG + + + V A
Sbjct: 96 MMATPELIRAFNGYIDGGITGIPTSFVID-ASGNVSGVIVG--PRSKADFDRIVKMALGA 152
Query: 166 PAETSEG 172
A T EG
Sbjct: 153 KAATKEG 159
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote
structural genomics, structural genomics consortium,
SGC, U function; 1.73A {Plasmodium yoelii}
Length = 160
Score = 45.5 bits (107), Expect = 1e-06
Identities = 11/75 (14%), Positives = 26/75 (34%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMK 137
V + F + C M L + + + + VD+ + D Y++ ++
Sbjct: 44 VCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVSVMFFY 103
Query: 138 DGREQDRFVGFQKSN 152
+ +G +N
Sbjct: 104 RNKHMMIDLGTGNNN 118
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 45.0 bits (107), Expect = 1e-06
Identities = 18/113 (15%), Positives = 36/113 (31%), Gaps = 32/113 (28%)
Query: 77 PVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDV--------------------- 115
P ++ F++ C CK P + ++ ++ + V +
Sbjct: 31 PTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDI 90
Query: 116 ------DLMTDLAMDYQVSSVP--VLIRMKDGREQDRFVGFQKSNLEELEAFV 160
D L ++ VP + K G+ + G S ++ LE V
Sbjct: 91 TQPIFVDSDHALTDAFENEYVPAYYVFD-KTGQLRHFQAGG--SGMKMLEKRV 140
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR
{Chlamydophila pneumoniae}
Length = 154
Score = 44.9 bits (106), Expect = 2e-06
Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 17/153 (11%)
Query: 29 INASQETNTTATNTTPTGNKTPPAEAPSTSFQITDQKEFEAKVKQASTPVIVDF-FAKWC 87
+ ++ A N + + Q E KQ P+ + F + WC
Sbjct: 1 MAHHHHHHSAARRRASGENLQQTRPIAAANLQWESYAEALEHSKQDHKPIGLFFTGSDWC 60
Query: 88 DPCKLMAP---CLEAIVERMNGKVQLAKVDVD-----------LMTDLAMDYQVSSVPVL 133
C M + + +VD +L Y+V+ P L
Sbjct: 61 MWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPEL 120
Query: 134 IRM-KDGREQDRFVGFQKSNLEELEAFVTNAEK 165
+ + +G++ R +GF+ + V +A K
Sbjct: 121 VFIDAEGKQLAR-MGFEPGGGAAYVSKVKSALK 152
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2,
NYSGXRC, structu genomics, protein structure initiative;
1.76A {Thermus thermophilus}
Length = 154
Score = 44.6 bits (106), Expect = 2e-06
Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 28/98 (28%)
Query: 77 PVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQL-------------------------A 111
P ++ F+A WC CK P L + E +
Sbjct: 32 PAVIVFWASWCTVCKAEFPGLHRVAEETGVPFYVISREPRDTREVVLEYMKTYPRFIPLL 91
Query: 112 KVDVDLMTDLAMDYQVSSVP--VLIRMKDGREQDRFVG 147
D D ++A ++V P ++ ++G+ F G
Sbjct: 92 ASDRDRPHEVAARFKVLGQPWTFVVD-REGKVVALFAG 128
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga
hutchinsoni structural genomics, PSI-2, protein
structure initiative; 1.88A {Cytophaga hutchinsonii}
Length = 148
Score = 44.6 bits (106), Expect = 2e-06
Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 44/150 (29%)
Query: 46 GNKTPPAEAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMN 105
G K P T+ + +AK I+ F+ C C+ P L +
Sbjct: 8 GKKAPNLYMTDTTGTYRYLYDVQAKY------TILFFWDSQCGHCQQETPKLYDWWLKNR 61
Query: 106 GK----------------------------VQLAKVDVDLMTDLAMDYQVSSVP--VLIR 135
K + + D TD + Y + + P ++
Sbjct: 62 AKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVR--DSKNHTDFKITYDIYATPVLYVLD 119
Query: 136 MKDGREQDRFVGFQKSNLEELEAFVTNAEK 165
K+ + +G+ E L+ F+ EK
Sbjct: 120 -KNKVIIAKRIGY-----ENLDDFLVQYEK 143
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron
transport; 1.80A {Leishmania major}
Length = 165
Score = 44.8 bits (106), Expect = 2e-06
Identities = 21/139 (15%), Positives = 35/139 (25%), Gaps = 39/139 (28%)
Query: 29 INASQETNTTATNTTPTGNKTPPAEAPSTSFQITDQK-------EFEAKVKQASTPVIVD 81
+ +S + ++ P G+ ++ K V
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMSGVAKHLGEALKLRKQADTADMDSLSGKT------VFFY 54
Query: 82 FFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDL------------------------ 117
F A WC PC+ P L E+ + +
Sbjct: 55 FSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANR 114
Query: 118 --MTDLAMDYQVSSVPVLI 134
+ L Y V S+P LI
Sbjct: 115 NIVEALTKKYSVESIPTLI 133
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural
genomics, PSI, protein structure initiative; NMR
{Nitrosomonas europaea}
Length = 107
Score = 43.6 bits (103), Expect = 2e-06
Identities = 16/98 (16%), Positives = 38/98 (38%), Gaps = 12/98 (12%)
Query: 67 FEAKVKQASTPVIVDFFAK-WCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDY 125
F+ + P + + + C C+ M L + ++ +L +++D L Y
Sbjct: 19 FQGHMNNQVEPRKLVVYGREGCHLCEEMIASLRVLQKKSW--FELEVINIDGNEHLTRLY 76
Query: 126 QVSSVPVLIRMKDGREQD--RFVGFQKSNLEELEAFVT 161
VPVL + + +E + + + A+++
Sbjct: 77 NDR-VPVLFAVNEDKELCHYFL------DSDVIGAYLS 107
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
c.47.1.24
Length = 153
Score = 44.5 bits (105), Expect = 2e-06
Identities = 14/130 (10%), Positives = 41/130 (31%), Gaps = 11/130 (8%)
Query: 59 FQITDQKEFEAKVKQAST---PVIVDFFAKWCDPCKLMAP---CLEAIVERMNGKVQLAK 112
+ + FE + ++++ C+ + EA+ + +
Sbjct: 23 IDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQ 82
Query: 113 VDVDLM--TDLAMDYQVSSVP--VLIRMKDGREQDRFVGFQKSN-LEELEAFVTNAEKPA 167
V D Y++ P ++ + G++ + S+ L+++ F+ +
Sbjct: 83 VYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLGEHGQLD 142
Query: 168 ETSEGVPSQT 177
S +
Sbjct: 143 GLSSSSGPSS 152
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 44.2 bits (105), Expect = 3e-06
Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 29/110 (26%)
Query: 77 PVIVDFFAKWCDPCKLMAPCLEAIVERMNGK-VQLAKVDV-------------------- 115
+++F+ C C P + K Q+ V
Sbjct: 30 VTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFT 89
Query: 116 ---DLMTDLAMDYQVSSVP--VLIRMKDGREQDRFVGFQKSNLEELEAFV 160
D + + P VLI K G +VG + + +L +
Sbjct: 90 VMYDADKAVGQAFGTQVYPTSVLIG-KKGEILKTYVG--EPDFGKLYQEI 136
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics,
unknown function, thioredoxin-like; NMR {Bacteroides
vulgatus}
Length = 152
Score = 43.8 bits (104), Expect = 3e-06
Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 29/109 (26%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGK-VQLAKVDVD-------------------L 117
+ +D +A WC PC+ P L+ + E+ GK + + D L
Sbjct: 33 IYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQL 92
Query: 118 MTD----LAMDYQVSSVP--VLIRMKDGREQDRFVGFQKSNLEELEAFV 160
Y ++ +P +L+ +DG+ + + +
Sbjct: 93 HMGTDRTFMDAYLINGIPRFILLD-RDGKIISANMTRP--SDPKTAEKF 138
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Length = 167
Score = 43.9 bits (103), Expect = 5e-06
Identities = 14/119 (11%), Positives = 39/119 (32%), Gaps = 6/119 (5%)
Query: 57 TSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVD 116
S + + + ++V WC C++ L+ + ++LA +
Sbjct: 37 ESNGLPSALTERLQRIERRYRLLV-AGEMWCPDCQINLAALDFAQR-LQPNIELAIISKG 94
Query: 117 LMTDLAMDYQV---SSVPVLIRM-KDGREQDRFVGFQKSNLEELEAFVTNAEKPAETSE 171
D ++P+++ + ++ RFV ++ L+ + +
Sbjct: 95 RAEDDLRQRLALERIAIPLVLVLDEEFNLLGRFVERPQAVLDGGPQALAAYKAGDYLEH 153
>2lrn_A Thiol:disulfide interchange protein; structural genomics,
thioredoxin-like, NEW YORK structural G research
consortium, oxidoreductase; NMR {Bacteroides SP}
Length = 152
Score = 43.5 bits (103), Expect = 6e-06
Identities = 20/126 (15%), Positives = 35/126 (27%), Gaps = 37/126 (29%)
Query: 77 PVIVDFFAKWCDPCKLMAPCLEAIVERMNGK-VQLAKVDVD------------------- 116
V+VDF+ C C+ P L K + V D
Sbjct: 31 YVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQ 90
Query: 117 ------LMTDLAMDYQVSSVP--VLIRMKDGREQDRFVGFQKSNLEELEAFVT---NAEK 165
+ D+ Y + P +L+ +G+ + + ++L V N K
Sbjct: 91 VLLQKDDVKDVLESYCIVGFPHIILVD-PEGKIVAKELRG-----DDLYNTVEKFVNGAK 144
Query: 166 PAETSE 171
Sbjct: 145 EGHHHH 150
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 43.1 bits (101), Expect = 7e-06
Identities = 16/119 (13%), Positives = 35/119 (29%), Gaps = 8/119 (6%)
Query: 41 NTTPTGNKTPPAEAPSTSFQITDQKEFEAKVKQAST---PVIVDFFAKWCDPCKLMAP-- 95
+ + P + IT + +E + A P++V + C + +
Sbjct: 7 HMIKKEKRPPQTLSRGWGDDITWVQTYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVF 66
Query: 96 -CLEAIVERMNGKVQLAKVDVDLMTD-LAMDYQVSSVPVLIRMKDGREQDRFVGFQKSN 152
E I E K + + + L+ D Q + + + G +
Sbjct: 67 AQNEEIQEMAQNKFIMLNLMHETTDKNLSPDGQYVPRIMFVD-PSLTVRADIAGRYSNR 124
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G
midwest center for structural genomics, protein
structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 42.5 bits (100), Expect = 1e-05
Identities = 25/165 (15%), Positives = 39/165 (23%), Gaps = 55/165 (33%)
Query: 40 TNTTPTGNKTPPAEAPSTSFQITDQK-------EFEAKVKQASTPVIVDFFAKWCDPCKL 92
+N + SF +T V VI+ F A WC C
Sbjct: 1 SNAPRAAGHSEEVLEREASFSLTTIDGEVISLNNVGGDV------VILWFMAAWCPSCVY 54
Query: 93 MAPCLEAIVERMNGKVQLA---------------------------------------KV 113
MA L+ + E+ +A +
Sbjct: 55 MADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWI 114
Query: 114 DVDLMTDLAMDYQVSSVP--VLIRMKDGREQDRFVGFQKSNLEEL 156
V L + V S+ V++ K LE +
Sbjct: 115 MVMDDGSLVEKFNVRSIDYIVIMD-KSSNVLYAGTTPSLGELESV 158
>3f9u_A Putative exported cytochrome C biogenesis-related; exported
cytochrome C biogenesis-related protein, bacteroide
fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Length = 172
Score = 42.7 bits (100), Expect = 1e-05
Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 11/123 (8%)
Query: 44 PTGNKTPPAEAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAP---CLEAI 100
P + + D +Q + PV++DF C C+ M +
Sbjct: 16 PMKTQDFNLYTNEVHAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKV 75
Query: 101 VERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFV 160
+N L + VD T L ++ M++G E+ K + + F
Sbjct: 76 SSIINNDYVLITLYVDNKTPLTEPVKI--------MENGTERTLRTVGDKWSYLQRVKFG 127
Query: 161 TNA 163
NA
Sbjct: 128 ANA 130
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein
structure initiative; 2.00A {Neisseria meningitidis
serogroup B}
Length = 151
Score = 42.0 bits (99), Expect = 2e-05
Identities = 20/125 (16%), Positives = 36/125 (28%), Gaps = 34/125 (27%)
Query: 77 PVIVDFFAKWCDPCKLMAPCLEAIVERMNGK-VQLAKVDVD-----------------LM 118
IV+ +A WC PC+ P + + V + + +D +
Sbjct: 26 VRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIW 85
Query: 119 TDL---------AMDYQVSSVP--VLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEKPA 167
V +P V+ + G + N + L V A +
Sbjct: 86 RYTGANSRNFMKTYGNTVGVLPFTVVEA-PKCGYRQTITG--EVNEKSLTDAVKLA--HS 140
Query: 168 ETSEG 172
+ EG
Sbjct: 141 KCREG 145
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double
disulfide bridge, membrane protein; 1.60A
{Bradyrhizobium japonicum} SCOP: c.47.1.10
Length = 186
Score = 42.1 bits (99), Expect = 2e-05
Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 43/157 (27%)
Query: 50 PPAEAPSTSFQITDQKE-----FEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERM 104
P + P +F+ D K F K ++V+ +A WC PC+ P L+ + ++
Sbjct: 36 APLKLPDLAFEDADGKPKKLSDFRGKT------LLVNLWATWCVPCRKEMPALDELQGKL 89
Query: 105 NGK-VQLAKVDVD----------------------------LMTDLAMDYQVSSVP--VL 133
+G ++ +++D + DL + +P VL
Sbjct: 90 SGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVL 149
Query: 134 IRMKDGREQDRFVGFQKSNLEELEAFVTNAEKPAETS 170
+ G E G + E+ + A A +
Sbjct: 150 VD-PQGCEIATIAGPAEWASEDALKLIRAATGKAAAA 185
>2ls5_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, NEW structural genomics research
consortium; NMR {Bacteroides thetaiotaomicron}
Length = 159
Score = 41.2 bits (97), Expect = 3e-05
Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 30/113 (26%)
Query: 77 PVIVDFFAKWCDPCKLMAPCLEAIVERM---NGKVQLAKVDV------------------ 115
V++ F A WC C+ P +E + N L +D
Sbjct: 35 VVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTY 94
Query: 116 ----DLMTDLAMDYQV--SSVP--VLIRMKDGREQDRFVGFQKSNLEELEAFV 160
D D+ Y + + + VLI ++G+ + + L +
Sbjct: 95 PLGLDPGADIFAKYALRDAGITRNVLID-REGKIVKLTRLYNEEEFASLVQQI 146
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural
genomics, joint center F structural genomics, JCSG;
2.02A {Parabacteroides distasonis}
Length = 143
Score = 40.8 bits (96), Expect = 4e-05
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 11/78 (14%)
Query: 44 PTGNKTPPAEAPSTSFQITDQK----EFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEA 99
T P AP F D K + +++F+A + + L
Sbjct: 3 LTEGVNPGDLAPRIEFLGNDAKASFHNQLGRY------TLLNFWAAYDAESRARNVQLAN 56
Query: 100 IVERMNGK-VQLAKVDVD 116
V + + + + +D
Sbjct: 57 EVNKFGPDKIAMCSISMD 74
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10 PDB: 3ios_A
Length = 136
Score = 40.0 bits (94), Expect = 7e-05
Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 25/88 (28%)
Query: 77 PVIVDFFAKWCDPCKLMAPCLEAIVERMNGKV---------------QLAKVDVDLMT-- 119
P ++ F+A WC C+ AP + + + K V T
Sbjct: 27 PAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQL 86
Query: 120 -----DLAMDYQVSSVP--VLIRMKDGR 140
+ ++ V+ P + G
Sbjct: 87 ADTDGSVWANFGVTQQPAYAFVD-PHGN 113
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2,
structure initiative, midwest center for structural
genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Length = 148
Score = 40.0 bits (94), Expect = 8e-05
Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 32/111 (28%)
Query: 77 PVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDL------------------- 117
++++F+A WCDP L+ + + A + + L
Sbjct: 35 YLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWD 94
Query: 118 --------MTDLAMDYQVSSVP--VLIRMKDGREQDRFVGFQ--KSNLEEL 156
++ A Y + ++P +L+ G+ R + + L+EL
Sbjct: 95 QVCDFTGLSSETAKQYAILTLPTNILLS-PTGKILARDIQGEALTGKLKEL 144
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG,
structural genomics, midwest center for structural
genomics; 1.75A {Corynebacterium glutamicum}
Length = 183
Score = 40.1 bits (94), Expect = 9e-05
Identities = 16/119 (13%), Positives = 33/119 (27%), Gaps = 38/119 (31%)
Query: 77 PVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDV--------------------- 115
VI++ + +WC PC+ + L+ I E +
Sbjct: 61 VVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTD 120
Query: 116 ---------DLMTDLAMD---YQVSSVP--VLIRMKDGREQDRFVGFQKSNLEELEAFV 160
D A S +P +++ K R F+ + +++
Sbjct: 121 NGLDYPSIYDPPFMTAASLGGVPASVIPTTIVLD-KQHRPAAVFLR--EVTSKDVLDVA 176
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 39.7 bits (93), Expect = 1e-04
Identities = 16/83 (19%), Positives = 22/83 (26%), Gaps = 26/83 (31%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKV------------------------ 113
V F A WC P + P L + K +
Sbjct: 31 VFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALP 90
Query: 114 --DVDLMTDLAMDYQVSSVPVLI 134
D M L + V S+P L+
Sbjct: 91 FEDRKGMEFLTTGFDVKSIPTLV 113
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A
{Aeropyrum pernix}
Length = 243
Score = 40.2 bits (93), Expect = 1e-04
Identities = 20/112 (17%), Positives = 33/112 (29%), Gaps = 11/112 (9%)
Query: 66 EFEAKVKQASTPV-IVDFFAKWCDPCKLMAPCLEAI----VERMNGKVQLAKVDVDLMTD 120
+ +K V I C C ++ N + V+ D
Sbjct: 128 ATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPD 187
Query: 121 LAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEKPAETSEG 172
+A Y V SVP + V E+ +V +A + T +G
Sbjct: 188 IADKYGVMSVPSIA------INGYLVFVGVPYEEDFLDYVKSAAEGRLTVKG 233
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW
YORK structural G research consortium, nysgrc,
PSI-biology; NMR {Bacteroides vulgatus}
Length = 152
Score = 38.1 bits (89), Expect = 4e-04
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 13/68 (19%)
Query: 47 NKTPPAEAPSTSFQITDQK-------EFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEA 99
+ EA Q+ D K + + KV V++DF L
Sbjct: 6 PEDKIKEASIIDIQLKDLKGNTRSLTDLKGKV------VLIDFTVYNNAMSAAHNLALRE 59
Query: 100 IVERMNGK 107
+ + +
Sbjct: 60 LYNKYASQ 67
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A
1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 37.4 bits (87), Expect = 8e-04
Identities = 15/84 (17%), Positives = 24/84 (28%), Gaps = 26/84 (30%)
Query: 77 PVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDV--------------------- 115
V F A WC P + P L ++ + V
Sbjct: 30 LVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAV 89
Query: 116 -----DLMTDLAMDYQVSSVPVLI 134
+ + L+ + V S+P LI
Sbjct: 90 PFAQSEAVQKLSKHFNVESIPTLI 113
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin;
2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Length = 144
Score = 36.9 bits (86), Expect = 9e-04
Identities = 20/115 (17%), Positives = 31/115 (26%), Gaps = 32/115 (27%)
Query: 46 GNKTPPAEAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMN 105
P A + K V + F A WC PC+ P L E+ +
Sbjct: 5 AKYLPGATNLLSKSGEVSLGSLVGKT------VFLYFSASWCPPCRGFTPVLAEFYEKHH 58
Query: 106 GKVQLAKVDVDL--------------------------MTDLAMDYQVSSVPVLI 134
V + +++L + V S+P LI
Sbjct: 59 VAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLI 113
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1,
thiol-disulfide oxidoreduct TLPA-like family, PSI-2;
1.74A {Bacteroides thetaiotaomicron}
Length = 150
Score = 36.6 bits (85), Expect = 0.001
Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 31/89 (34%)
Query: 77 PVIVDFFAKWCDPCKLMA--PCLEAIVERM--NGKVQLAKVDVD---------------- 116
++++F+A W D L I ++ N + + + +D
Sbjct: 35 SLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLD 94
Query: 117 ---------LMTDLAMDYQVSSVP--VLI 134
L +++A Y + +P +L+
Sbjct: 95 WEQVCDFGGLNSEVAKQYSIYKIPANILL 123
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; 2.70A
{Shigella flexneri 2A} PDB: 2hfd_A
Length = 140
Score = 36.2 bits (83), Expect = 0.002
Identities = 12/114 (10%), Positives = 32/114 (28%), Gaps = 4/114 (3%)
Query: 59 FQITDQKEFEAKVKQASTPVI-VDFFAKWCDPCKLMAPCLEAIVERMNGK-VQLAKVDVD 116
+ + + + QA V+ + K + ++ Q+A D++
Sbjct: 19 WTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLE 78
Query: 117 LMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSN--LEELEAFVTNAEKPAE 168
+ + P + G + G + + V ++ A
Sbjct: 79 QSEAIGDRFGAFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQERAS 132
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius
rotundicauda}
Length = 143
Score = 35.9 bits (83), Expect = 0.002
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 78 VIVDFFAKWCDPCKLMAPCLEAIVERMNGK 107
+ F A WC PC+ P L + +
Sbjct: 29 IGFYFSAHWCPPCRGFTPILADMYSELVDD 58
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 36.5 bits (84), Expect = 0.003
Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 23/122 (18%)
Query: 63 DQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERM--NGKVQLAKVDVDLM-- 118
D F + + S V+V F ++ K + + E + + +A+V +
Sbjct: 11 DTVTFYKVIPK-SKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGISDYGD 67
Query: 119 ---TDLAMDYQV--SSVPVLIRMKDG-----------REQDRFVGFQKSNLEELEAFVTN 162
+L+ Y++ S PV +DG + + K L
Sbjct: 68 KLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQGVYLGMPGCL 127
Query: 163 AE 164
Sbjct: 128 PV 129
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily
protein SPOA0173, silicibacter DSS, structural genomics,
PSI-2; 1.95A {Silicibacter pomeroyi}
Length = 158
Score = 35.9 bits (83), Expect = 0.003
Identities = 17/121 (14%), Positives = 33/121 (27%), Gaps = 40/121 (33%)
Query: 77 PVIVDFFAKWCDPCKLMA-PCLEAIVERMNGK------VQLAKVDVDLMTD--------- 120
++++ F C C + P + + + + MT
Sbjct: 30 VIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHE 89
Query: 121 ------LAMD-------------YQVSSVP--VLIRMKDGREQDRFVGFQKSNLEELEAF 159
+ +D YQ+ P +LI K G + G + L A
Sbjct: 90 YRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLID-KAGDLRAHHFGD--VSELLLGAE 146
Query: 160 V 160
+
Sbjct: 147 I 147
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide
exchange, cell inner membrane, CYT C-type biogenesis,
disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB:
3kh9_A
Length = 176
Score = 35.4 bits (82), Expect = 0.005
Identities = 30/150 (20%), Positives = 46/150 (30%), Gaps = 33/150 (22%)
Query: 46 GNKTPPAEAPS--TSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVE- 102
G P + PS + + + + K P +V+ + WC C++ P L + E
Sbjct: 33 GKPFPAFDLPSVQDPARRLTEADLKGK------PALVNVWGTWCPSCRVEHPELTRLAEQ 86
Query: 103 ------------RMNGKVQLAK-------VDVDLMTDLAMDYQVSSVP--VLIRMKDGRE 141
L + D L +D V P LI K G
Sbjct: 87 GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGAPETYLID-KQGII 145
Query: 142 QDRFVG--FQKSNLEELEAFVTNAEKPAET 169
+ + VG QK E+L E
Sbjct: 146 RHKIVGVVDQKVWREQLAPLYQQLLDEPEA 175
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural
genomics, midwest CE structural genomics; HET: MSE;
2.20A {Corynebacterium glutamicum}
Length = 160
Score = 34.8 bits (80), Expect = 0.007
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 77 PVIVDFFAKWCDPCKLMA-PCLEAIVERMNGK 107
V+V+ F C C P + I ++
Sbjct: 32 VVVVEVFQMLCPGCVNHGVPQAQKIHRMIDES 63
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 33.9 bits (78), Expect = 0.012
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 77 PVIVDFFAKWCDPCKLMAPCLEA 99
++ C C M L+A
Sbjct: 33 YTLLFINNPGCHACAEMIEGLKA 55
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 33.5 bits (77), Expect = 0.017
Identities = 7/60 (11%), Positives = 16/60 (26%), Gaps = 6/60 (10%)
Query: 43 TPTGNKTPPAEAPSTSFQITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVE 102
+ G K + + +A+ ++ F+ C C+ I
Sbjct: 1 SNAGMKAADFTYVTVHGDNSRMSRLKAQY------TMLFFYDPDCSNCRKFEKLFAEIPA 54
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold,
cytochrome C maturation, atomic resolution
oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP:
c.47.1.10
Length = 156
Score = 32.2 bits (74), Expect = 0.043
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 77 PVIVDFFAKWCDPCKLMAPCLEAIVERMN 105
+V+ +A WC PC AP L + +
Sbjct: 44 VSLVNVWASWCVPCHDEAPLLTELGKDKR 72
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal
thioredoxin-like domain, N-terminal beta-sheet,
fingerprint rigion, oxidoreductase; 1.90A {Escherichia
coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Length = 168
Score = 32.3 bits (74), Expect = 0.049
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 11/64 (17%)
Query: 51 PAEAPST-------SFQITD----QKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEA 99
P S F++ + ++A V PV+++ +A WC C+ L
Sbjct: 16 PTNLESALIGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQ 75
Query: 100 IVER 103
+ +
Sbjct: 76 LSAQ 79
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.055
Identities = 22/99 (22%), Positives = 31/99 (31%), Gaps = 20/99 (20%)
Query: 54 APSTSFQITD--QKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLA 111
P++ D + K PV D F D L E IV+ +
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVY-DTF-DGSDLRVLSGSISERIVD------CII 484
Query: 112 KVDVDLMTDLAM------DY---QVSSVPVLI-RMKDGR 140
++ V T D+ S + VL R KDG
Sbjct: 485 RLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT 523
Score = 30.4 bits (68), Expect = 0.42
Identities = 29/166 (17%), Positives = 51/166 (30%), Gaps = 57/166 (34%)
Query: 51 PAEAPSTSFQITDQKEFEAKVKQASTPVIVDF-FAKWCDPCKLMAPCLEAIVERMNGKVQ 109
P+ P + ++ + S P+I A + KL+ + + G
Sbjct: 222 PSNTPDKDYLLS------IPI---SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 110 LAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEEL--------EAFVT 161
++ + V++V I D E F + + L EA+
Sbjct: 273 HSQ-GL-----------VTAV--AIAETDSWES--FFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 162 NAEKPA------ETSEGVPS-----------------QTTNENAPA 184
+ P+ E +EGVPS TN + PA
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Score = 26.9 bits (59), Expect = 4.7
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 9/41 (21%)
Query: 119 TD-LAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEA 158
T+ A D + ++ L+ +F+G+ S +E +
Sbjct: 45 TEGFAADDEPTTPAELVG--------KFLGYVSSLVEPSKV 77
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.099
Identities = 9/78 (11%), Positives = 17/78 (21%), Gaps = 11/78 (14%)
Query: 100 IVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAF 159
N ++ L+T QV+ + ++ L
Sbjct: 258 AWNAFNLSCKI------LLT--TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 160 VTNAEK---PAETSEGVP 174
+ P E P
Sbjct: 310 YLDCRPQDLPREVLTTNP 327
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond,
redox-active center, transcription regulator; HET: MSE
GOL; 1.50A {Pseudomonas aeruginosa PAO1}
Length = 192
Score = 30.9 bits (69), Expect = 0.17
Identities = 9/47 (19%), Positives = 16/47 (34%)
Query: 70 KVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVD 116
V Q +V+ F C C P + E++ V ++
Sbjct: 20 PVSQPGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPAL 66
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
2.35A {Bordetella parapertussis}
Length = 195
Score = 30.7 bits (69), Expect = 0.21
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 70 KVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKV 113
+++FFA C C + P +E + V L +V
Sbjct: 20 PSDTPGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQV 63
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase,
disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB:
3dvw_A 3a3t_A
Length = 193
Score = 30.1 bits (67), Expect = 0.30
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 70 KVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAK 112
+QA +++FF +C C + P L + + L
Sbjct: 19 PQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRT 61
>1bed_A DSBA oxidoreductase; TCPG, protein disulfide isomerase, disulfide
oxidoreductase; 2.00A {Vibrio cholerae} SCOP: c.47.1.13
PDB: 2ijy_A
Length = 181
Score = 29.7 bits (66), Expect = 0.38
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 73 QASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVDLM 118
+S+PV+ +FF+ +C C P + + +++ + K V M
Sbjct: 16 ASSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFM 61
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase
subunit OST6; oxidoreductase, active site loop, redox
state, membrane; HET: PG4; 1.30A {Saccharomyces
cerevisiae} PDB: 3g7y_A 3g9b_A*
Length = 178
Score = 29.2 bits (65), Expect = 0.50
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 87 CDPCKLMAPCLEAIV-----ERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLI 134
C C A+ + VDV+ + L D ++ +VP L+
Sbjct: 56 CQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLVKDLKLQNVPHLV 108
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase,
flavoprotein, metal-binding, alcohol fermentation; HET:
TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A
3oe1_A* 1zpd_A*
Length = 568
Score = 29.4 bits (67), Expect = 0.62
Identities = 8/66 (12%), Positives = 16/66 (24%), Gaps = 5/66 (7%)
Query: 46 GNKTPPAEAPSTSFQITDQKEFEAKVKQA----STPVIVDFFAKWCDPCKLMAPCLEAIV 101
+ E +K A P +++ F D + + V
Sbjct: 497 NGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVK-WGKRV 555
Query: 102 ERMNGK 107
N +
Sbjct: 556 AAANSR 561
>1wwj_A Circadian clock protein KAIB; 1.90A {Synechocystis SP} PDB: 1r5p_A
2qke_A 1vgl_A
Length = 105
Score = 28.3 bits (63), Expect = 0.65
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 97 LEAIVER-MNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVG 147
L+ I+E+ G L +DV LA + ++ + P L ++ + + +G
Sbjct: 28 LKNILEQEFQGVYALKVIDVLKNPQLAEEDKILATPTLAKILPPPVR-KIIG 78
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold,
DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis
serogroup B} PDB: 3dvx_A
Length = 195
Score = 28.7 bits (63), Expect = 0.82
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 70 KVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAK 112
+Q+ +++FF +C C P L + + + L
Sbjct: 17 PQEQSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRT 59
>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic
reticulum, glycoprotein, redox-active center; 1.92A
{Rattus norvegicus}
Length = 250
Score = 28.2 bits (62), Expect = 1.5
Identities = 13/110 (11%), Positives = 31/110 (28%), Gaps = 6/110 (5%)
Query: 60 QITDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKV---DVD 116
+I K+ + +K VI+ F DP + + + ++
Sbjct: 10 EILTLKQVQEFLKDGDDVVILGVFQGVGDP---GYLQYQDAANTLREDYKFHHTFSTEIA 66
Query: 117 LMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELEAFVTNAEKP 166
+++ V P + K + ++ +V P
Sbjct: 67 KFLKVSLGKLVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHALP 116
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein,
periplasm, redox-active center, oxidoreductase; HET:
PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Length = 195
Score = 27.6 bits (60), Expect = 1.9
Identities = 6/59 (10%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
Query: 69 AKVKQASTPVIVDFFAKWCDPCKLMAPCLEA-IVERMNGKVQLAKVDVDLMTDLAMDYQ 126
K + ++ F+ C C + + E++ V ++ +
Sbjct: 11 EKPIPNADKTLIKVFSYACPFCYKYDKAVTGPVSEKVKDIVAFTPFHLETKGEYGKQAS 69
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA,
thioredoxin fold, redox- active center; 1.90A {Xylella
fastidiosa}
Length = 193
Score = 27.8 bits (61), Expect = 2.0
Identities = 10/45 (22%), Positives = 14/45 (31%)
Query: 72 KQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDVD 116
A +V+ F C C L+A R V+ V
Sbjct: 22 PLAGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPAV 66
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 3.0
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 14/36 (38%)
Query: 149 QKSNLEELEAFVTNAEKPAETSEGVPSQTTNENAPA 184
+K L++L+A + K ++APA
Sbjct: 18 EKQALKKLQASL----KLYA-----D-----DSAPA 39
>1ilo_A Conserved hypothetical protein MTH895;
beta-alpha-beta-alpha-beta-BETA-alpha motif, structural
genomics, PSI; NMR
{Methanothermobacterthermautotrophicus str} SCOP:
c.47.1.1
Length = 77
Score = 25.4 bits (56), Expect = 3.9
Identities = 6/48 (12%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 87 CDPCKLMAPCLEAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLI 134
C C+++ V+ + + K+ ++ ++ ++++P L
Sbjct: 11 CANCQMLEKNAREAVKELGIDAEFEKIK-EMDQ--ILEAGLTALPGLA 55
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide
isomerase, struc genomics, PSI-2, protein structure
initiative; 1.85A {Nitrosomonas europaea}
Length = 216
Score = 26.9 bits (59), Expect = 4.3
Identities = 9/78 (11%), Positives = 18/78 (23%), Gaps = 8/78 (10%)
Query: 98 EAIVERMNGKVQLAKVDVDLMTDLAMDYQVSSVPVLIRMKDGREQDRFVGFQKSNLEELE 157
+ + +S P L+ G++ +E
Sbjct: 147 SRFTPVFQSDEAKQRTLAGF--QRVAQWGISGFPALVVESGTDRYLITTGYR-----PIE 199
Query: 158 AFVTNAEKPAETSEGVPS 175
A + + GV S
Sbjct: 200 ALRQLLDTWLQ-QHGVGS 216
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide
oxidoreductase, oxidoreductase, protein disulfide
isomerase, protein folding, thioredoxin; 2.4A
{Escherichia coli} SCOP: c.47.1.13
Length = 197
Score = 26.3 bits (57), Expect = 5.5
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 73 QASTPVIVDFFAKWCDPCKLMAPCLE---AIVERMNGKVQLAKVDVDLM 118
A P +++FF+ +C C L + +++ V++ K V+ M
Sbjct: 111 VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFM 159
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A
{Escherichia coli} SCOP: c.1.10.2
Length = 286
Score = 26.4 bits (59), Expect = 5.5
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 72 KQASTPVIVDFFA---KWCDPCKLMAPCLEAIVERMNGKVQL 110
K A + +FA + DP M ++A+ E + K+ +
Sbjct: 236 KIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINV 277
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein,
THDP-dependent enzymes, thiamine pyrophosphate, lyase;
HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Length = 570
Score = 26.4 bits (59), Expect = 6.1
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 53 EAPSTSFQITDQKEFEAKVKQA----STPVIVDFFAKWCDPCKLMAPCLEAIVER 103
E S + + EF + +K+A + ++ + D KL+ + E+
Sbjct: 514 EDRVVSKIVRTENEFVSVMKEAQADVNRMYWIELVLEKEDAPKLLKKMGKLFAEQ 568
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics,
center for structural genomics of infec diseases, csgid,
alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis}
Length = 288
Score = 26.0 bits (58), Expect = 7.1
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 72 KQASTPVIVDFFA---KWCDPCKLMAPCLEAIVERMNGKVQL 110
+ T + + + DP K + P +AI + GK++
Sbjct: 240 QIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIRE 281
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics,
PSI-2, protein ST initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.76A {Vibrio
fischeri}
Length = 185
Score = 26.1 bits (56), Expect = 7.4
Identities = 9/65 (13%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 62 TDQKEFEAKVKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQLAKVDV-DLMTD 120
+ ++ + + FA C C+ M L I + + +
Sbjct: 9 VQYEVLSTSLENDGMAPVTEVFALSCGHCRNMENFLPVISQEAGTDIGKMHITFNQSAHI 68
Query: 121 LAMDY 125
+M Y
Sbjct: 69 ASMFY 73
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.20A {Coccidioides immitis}
Length = 306
Score = 26.1 bits (58), Expect = 7.9
Identities = 4/40 (10%), Positives = 11/40 (27%), Gaps = 1/40 (2%)
Query: 71 VKQASTPVIVDFFAKWCDPCKLMAPCLEAIVERMNGKVQL 110
V V+ + +L A+ + + +
Sbjct: 254 VNNEYVKVMREKAGSL-PITRLHEEVTNAMQAAVEKIMDM 292
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA
decay, LSM proteins, RNA binding protein; 2.70A
{Schizosaccharomyces pombe}
Length = 93
Score = 24.8 bits (54), Expect = 8.3
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 9/64 (14%)
Query: 120 DLAMDYQVSSVPVLIRMKDGRE-QDRFVGF-QKSN--LEELEAFVTNAEKPAETSEGVPS 175
L++D V ++++ RE R + + N L + E VT + +
Sbjct: 15 RLSLDEIV-----YVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALK 69
Query: 176 QTTN 179
Sbjct: 70 TIRK 73
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor,
lyase; HET: TD3; 1.80A {Helicobacter pylori} PDB:
3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Length = 307
Score = 25.7 bits (57), Expect = 9.9
Identities = 6/42 (14%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 72 KQASTPVIVDFFA---KWCDPCKLMAPCLEAIVERMNGKVQL 110
+ A + D K +P A+ + +++L
Sbjct: 259 RIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKL 300
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.124 0.350
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,597,829
Number of extensions: 144388
Number of successful extensions: 466
Number of sequences better than 10.0: 1
Number of HSP's gapped: 395
Number of HSP's successfully gapped: 193
Length of query: 189
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,244,745
Effective search space: 428719245
Effective search space used: 428719245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (24.7 bits)