BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17834
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T8I|A Chain A, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
pdb|3T8I|B Chain B, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
pdb|3T8I|C Chain C, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
pdb|3T8I|D Chain D, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
Length = 306
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/328 (29%), Positives = 154/328 (46%), Gaps = 40/328 (12%)
Query: 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRK 65
RKVI+D D DD A+LL + +++ +T GN ++ V N L+ G++
Sbjct: 2 RKVIVDSDTATDDTIAILLASR-----FFQLLGVTIVAGNVNYNQEVKNALFTLEYIGKQ 56
Query: 66 NIPVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVAL 125
++PVY G +P+ L + + + +H G NG + + + + H A+ A+
Sbjct: 57 DVPVYLGSQRPI----LGNWRTVEEVH--GSNGMSNWNYPEPNKRPEKEH-----AIDAI 105
Query: 126 HELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFNF 185
L++E +G + +L ++PLTNIAL P + K+++IMGG GN T AEFNF
Sbjct: 106 LRLSKEHEGELEILAISPLTNIALAYLKDPSVVKRVKKIWIMGGAFSK-GNTTPIAEFNF 164
Query: 186 LTDPEAAHIVL-GGFHGPICILPWEACLGIDISYEWRYDTLGASDAPYISLLN------- 237
DPEAA IVL GF I I+PWE +IS +L D YIS LN
Sbjct: 165 WVDPEAAKIVLDAGFD--ITIVPWEVA---EIS-----GSLNERDWEYISKLNTKLSNFF 214
Query: 238 -RLERGISDRAI-SMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACV 295
+ + + + + G + + DS + D I S VEL + +RG +
Sbjct: 215 INVNKTLKEYTTKNQGISGSIHPDSLTVSIAHDNSIILDSSLKYVDVELCSK-SRGAMLI 273
Query: 296 D--VVHSKTPNVRMIDTVDSRLLKDMLL 321
D +H PN ++ D K++L
Sbjct: 274 DWYSLHKNKPNAEIVLKADGGKFKNLLF 301
>pdb|3T8J|A Chain A, Structural Analysis Of Thermostable S. Solfataricus
Pyrimidine- Specific Nucleoside Hydrolase
Length = 311
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 158/340 (46%), Gaps = 54/340 (15%)
Query: 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRK 65
R I+D D DD +L L+LK N I+++A+T GN + V N L+ R+
Sbjct: 2 RHFIIDCDTAEDDVLSLYLLLK----NNIDVVAVTIVEGNISYEQEVKNALWALEQVNRE 57
Query: 66 NIPVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVAL 125
IPVY G +KPL L + + + +H GK G GD+ + + H A +A+
Sbjct: 58 -IPVYPGANKPL----LKNYITVEKVH--GKGGIGDVTVEPKRLKAQEKH-----AALAI 105
Query: 126 HELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFNF 185
+L E+ G + L ++PLTN+AL L + K++++MGG G+GN+T AEFN
Sbjct: 106 IDLANEYAGELEFLAISPLTNLALAYLLDNSIVKKIKKVWVMGGAVFGIGNITPVAEFNI 165
Query: 186 LTDPEAAHIVL-GGFHGPICILPWEACLGIDIS-YEWRYDTLGASDAPYISLLNRLERGI 243
DP+AA IV GF I ++PW+ + ++ EW +++ ++ +
Sbjct: 166 WVDPDAAKIVFNAGFD--ITMIPWDVIINYPVTDEEW-------------NVIKNMKTRM 210
Query: 244 SDRAISM-----GFNKWV------PADSALCTCFLDEKAITVSYETT-CSVELAGEITRG 291
S+ +SM ++ V P A+ T + +I E ++ ITRG
Sbjct: 211 SELYVSMYLHYRQYSSTVQKINGHPHPDAITTAIAIDGSIATRREKRFVVIDNTDNITRG 270
Query: 292 QACVDVVHSKT-----PNVRMIDTVDSR----LLKDMLLW 322
VD + T PN ++ ++ + + D+L W
Sbjct: 271 MTLVDRFDADTSWSDKPNAEIVYEINKKSFMEKIYDLLNW 310
>pdb|1EZR|A Chain A, Crystal Structure Of Nucleoside Hydrolase From Leishmania
Major
pdb|1EZR|B Chain B, Crystal Structure Of Nucleoside Hydrolase From Leishmania
Major
pdb|1EZR|C Chain C, Crystal Structure Of Nucleoside Hydrolase From Leishmania
Major
pdb|1EZR|D Chain D, Crystal Structure Of Nucleoside Hydrolase From Leishmania
Major
Length = 314
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 135/313 (43%), Gaps = 38/313 (12%)
Query: 5 PRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGR 64
PRK+ILD D GIDDA A+ L A IE++AIT GN L +V N V G
Sbjct: 2 PRKIILDCDPGIDDAVAIFL---AHGNPEIELLAITTVVGNQSLEKVTQNARLVADVAGI 58
Query: 65 KNIPVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGD--SDTLDRSCHVENISAV 122
+PV G +KPL+ + + H G+ G G++ LD V+ I +
Sbjct: 59 VGVPVAAGCTKPLV------RGVRNASHIHGETGMGNVSYPPEFKTKLDGRHAVQLIIDL 112
Query: 123 VALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAE 182
+ HE I+++ LTNIA+ +RL P+ KE+ +MGG + GN + AE
Sbjct: 113 IMSHE-----PKTITLVPTGGLTNIAMAVRLEPRIVDRVKEVVLMGGGYH-TGNASPVAE 166
Query: 183 FNFLTDPEAAHIVLGGFHGPICILPWEACL-GIDISY--------EWRYDTLGASDAPYI 233
FN DPEAAHIV W + G+D+++ + R +G A ++
Sbjct: 167 FNVFIDPEAAHIVFNE--------SWNVTMVGLDLTHLALATPAVQKRVREVGTKPAAFM 218
Query: 234 SLLNRLERGISDRAISMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQA 293
+ + ++ + + ++ + + + +EL G +T G
Sbjct: 219 LQILDFYTKVYEKE----HDTYGKVHDPCAVAYVIDPTVMTTERVPVDIELNGALTTGMT 274
Query: 294 CVDVVHSKTPNVR 306
D + + N R
Sbjct: 275 VADFRYPRPKNCR 287
>pdb|1MAS|A Chain A, Purine Nucleoside Hydrolase
pdb|1MAS|B Chain B, Purine Nucleoside Hydrolase
pdb|2MAS|A Chain A, Purine Nucleoside Hydrolase With A Transition State
Inhibitor
pdb|2MAS|B Chain B, Purine Nucleoside Hydrolase With A Transition State
Inhibitor
pdb|2MAS|C Chain C, Purine Nucleoside Hydrolase With A Transition State
Inhibitor
pdb|2MAS|D Chain D, Purine Nucleoside Hydrolase With A Transition State
Inhibitor
Length = 314
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 142/308 (46%), Gaps = 49/308 (15%)
Query: 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRK 65
+K+ILD D G+DDA A+LL A IE++AIT GN L++V N V G
Sbjct: 2 KKIILDCDPGLDDAVAILL---AHGNPEIELLAITTVVGNQTLAKVTRNAQLVADIAGIT 58
Query: 66 NIPVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDS--DTLDRSCHVENISAVV 123
+P+ G KPL+ K ++ H G++G G + + +D V I +V
Sbjct: 59 GVPIAAGCDKPLVRKIMTAG------HIHGESGMGTVAYPAEFKNKVDERHAVNLIIDLV 112
Query: 124 ALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEF 183
HE I+++ LTNIA+ RL P+ KE+ +MGG + GN TS AEF
Sbjct: 113 MSHE-----PKTITLVPTGGLTNIAMAARLEPRIVDRVKEVVLMGGGYHE-GNATSVAEF 166
Query: 184 NFLTDPEAAHIVLGGFHGPICILPWEACL-GIDISYEWRYDTLGASDAPYISLLNRLERG 242
N + DPEAAHIV W+ + G+D++++ A P I L R++
Sbjct: 167 NIIIDPEAAHIVFNE--------SWQVTMVGLDLTHQ-------ALATPPI--LQRVKEV 209
Query: 243 ISDRAISM-----------GFNKWVPADSALCTC---FLDEKAITVSYETTCSVELAGEI 288
++ A M N+++ A + C ++ + ++ + +EL G++
Sbjct: 210 DTNPARFMLEIMDYYTKIYQSNRYMAAAAVHDPCAVAYVIDPSVMTTERVPVDIELTGKL 269
Query: 289 TRGQACVD 296
T G D
Sbjct: 270 TLGMTVAD 277
>pdb|1YOE|A Chain A, Crystal Structure Of A The E. Coli Pyrimidine Nucleoside
Hydrolase Ybek With Bound Ribose
Length = 322
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 91/328 (27%), Positives = 145/328 (44%), Gaps = 44/328 (13%)
Query: 8 VILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNI 67
++LD D G DDA A++L L + + +++ AIT GN + + NV R+L R +I
Sbjct: 16 ILLDCDPGHDDAIAIVLALASPE---LDVKAITSSAGNQTPEKTLRNVLRMLTLLNRTDI 72
Query: 68 PVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVALHE 127
PV G KPL+ ++L N G+ L + + +N +AV + +
Sbjct: 73 PVAGGAVKPLM-REL----------IIADNVHGESGLDGPALPEPTFAPQNCTAVELMAK 121
Query: 128 LTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFNFLT 187
RE ++++ P TN+AL L P+ + IMGG G+GN T AAEFN
Sbjct: 122 TLRESAEPVTIVSTGPQTNVALLLNSHPELHSKIARIVIMGGA-MGLGNWTPAAEFNIYV 180
Query: 188 DPEAAHIVLGGFHGPICILPWEACLGIDISYEW--------RYDTLGASDAPYIS-LLNR 238
DPEAA IV F I ++ G+D++++ R+ +G + ++ LL+
Sbjct: 181 DPEAAEIV---FQSGIPVV----MAGLDVTHKAQIHVEDTERFRAIGNPVSTIVAELLDF 233
Query: 239 LERGISDRAISMGFNKW----VPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQAC 294
D KW P +L + + S E VE G+ T+G
Sbjct: 234 FLEYHKDE-------KWGFVGAPLHDPCTIAWLLKPELFTSVERWVGVETQGKYTQGMTV 286
Query: 295 VDVVH--SKTPNVRMIDTVDSRLLKDML 320
VD + PN ++ VD + D+L
Sbjct: 287 VDYYYLTGNKPNATVMVDVDRQGFVDLL 314
>pdb|3G5I|A Chain A, Crystal Structure Of The E.Coli Riha Pyrimidine
Nucleosidase Bound To A Iminoribitol-Based Inhibitor
pdb|3G5I|B Chain B, Crystal Structure Of The E.Coli Riha Pyrimidine
Nucleosidase Bound To A Iminoribitol-Based Inhibitor
pdb|3G5I|C Chain C, Crystal Structure Of The E.Coli Riha Pyrimidine
Nucleosidase Bound To A Iminoribitol-Based Inhibitor
pdb|3G5I|D Chain D, Crystal Structure Of The E.Coli Riha Pyrimidine
Nucleosidase Bound To A Iminoribitol-Based Inhibitor
Length = 312
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 91/328 (27%), Positives = 145/328 (44%), Gaps = 44/328 (13%)
Query: 8 VILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNI 67
++LD D G DDA A++L L + + +++ AIT GN + + NV R+L R +I
Sbjct: 6 ILLDCDPGHDDAIAIVLALASPE---LDVKAITSSAGNQTPEKTLRNVLRMLTLLNRTDI 62
Query: 68 PVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVALHE 127
PV G KPL+ ++L N G+ L + + +N +AV + +
Sbjct: 63 PVAGGAVKPLM-REL----------IIADNVHGESGLDGPALPEPTFAPQNCTAVELMAK 111
Query: 128 LTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFNFLT 187
RE ++++ P TN+AL L P+ + IMGG G+GN T AAEFN
Sbjct: 112 TLRESAEPVTIVSTGPQTNVALLLNSHPELHSKIARIVIMGGA-MGLGNWTPAAEFNIYV 170
Query: 188 DPEAAHIVLGGFHGPICILPWEACLGIDISYEW--------RYDTLGASDAPYIS-LLNR 238
DPEAA IV F I ++ G+D++++ R+ +G + ++ LL+
Sbjct: 171 DPEAAEIV---FQSGIPVV----MAGLDVTHKAQIHVEDTERFRAIGNPVSTIVAELLDF 223
Query: 239 LERGISDRAISMGFNKW----VPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQAC 294
D KW P +L + + S E VE G+ T+G
Sbjct: 224 FLEYHKDE-------KWGFVGAPLHDPCTIAWLLKPELFTSVERWVGVETQGKYTQGMTV 276
Query: 295 VDVVH--SKTPNVRMIDTVDSRLLKDML 320
VD + PN ++ VD + D+L
Sbjct: 277 VDYYYLTGNKPNATVMVDVDRQGFVDLL 304
>pdb|3B9X|A Chain A, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik In Complex With Inosine
pdb|3B9X|B Chain B, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik In Complex With Inosine
pdb|3B9X|C Chain C, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik In Complex With Inosine
pdb|3B9X|D Chain D, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik In Complex With Inosine
Length = 333
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 97/191 (50%), Gaps = 16/191 (8%)
Query: 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRK 65
RK+ILD D G DDA A+++ A + I+++ IT GN L + + N V Q
Sbjct: 24 RKIILDCDPGHDDAIAIMM---AAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKL-EI 79
Query: 66 NIPVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVAL 125
N+PVY G+ +P+ + + D +H GD L + E+ AV +
Sbjct: 80 NVPVYAGMPQPI----MRQQIVADNIH-------GDTGLDGPVFEPLTRQAESTHAVKYI 128
Query: 126 HELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFNF 185
+ G I+++ + PL+NIA+ +R+ P +E+ +MGG + G GN T +AEFN
Sbjct: 129 IDTLMASDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAY-GTGNFTPSAEFNI 187
Query: 186 LTDPEAAHIVL 196
DPEAA +V
Sbjct: 188 FADPEAARVVF 198
>pdb|1Q8F|A Chain A, Crystal Structure Of The E.Coli Pyrimidine Nucleoside
Hydrolase Yeik
pdb|1Q8F|B Chain B, Crystal Structure Of The E.Coli Pyrimidine Nucleoside
Hydrolase Yeik
pdb|1Q8F|C Chain C, Crystal Structure Of The E.Coli Pyrimidine Nucleoside
Hydrolase Yeik
pdb|1Q8F|D Chain D, Crystal Structure Of The E.Coli Pyrimidine Nucleoside
Hydrolase Yeik
Length = 313
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 97/191 (50%), Gaps = 16/191 (8%)
Query: 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRK 65
RK+ILD D G DDA A+++ A + I+++ IT GN L + + N V Q
Sbjct: 4 RKIILDCDPGHDDAIAIMM---AAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKL-EI 59
Query: 66 NIPVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVAL 125
N+PVY G+ +P+ + + D +H GD L + E+ AV +
Sbjct: 60 NVPVYAGMPQPI----MRQQIVADNIH-------GDTGLDGPVFEPLTRQAESTHAVKYI 108
Query: 126 HELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFNF 185
+ G I+++ + PL+NIA+ +R+ P +E+ +MGG + G GN T +AEFN
Sbjct: 109 IDTLMASDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAY-GTGNFTPSAEFNI 167
Query: 186 LTDPEAAHIVL 196
DPEAA +V
Sbjct: 168 FADPEAARVVF 178
>pdb|3MKM|A Chain A, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik (Apo-Form)
pdb|3MKM|B Chain B, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik (Apo-Form)
pdb|3MKM|C Chain C, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik (Apo-Form)
pdb|3MKM|D Chain D, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik (Apo-Form)
pdb|3MKN|A Chain A, Crystal Structure Of The E. Coli Pyrimidine Nucleosidase
Yeik Bound To A Competitive Inhibitor
pdb|3MKN|B Chain B, Crystal Structure Of The E. Coli Pyrimidine Nucleosidase
Yeik Bound To A Competitive Inhibitor
pdb|3MKN|C Chain C, Crystal Structure Of The E. Coli Pyrimidine Nucleosidase
Yeik Bound To A Competitive Inhibitor
pdb|3MKN|D Chain D, Crystal Structure Of The E. Coli Pyrimidine Nucleosidase
Yeik Bound To A Competitive Inhibitor
Length = 316
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 97/191 (50%), Gaps = 16/191 (8%)
Query: 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRK 65
RK+ILD D G DDA A+++ A + I+++ IT GN L + + N V Q
Sbjct: 7 RKIILDCDPGHDDAIAIMM---AAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKL-EI 62
Query: 66 NIPVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVAL 125
N+PVY G+ +P+ + + D +H GD L + E+ AV +
Sbjct: 63 NVPVYAGMPQPI----MRQQIVADNIH-------GDTGLDGPVFEPLTRQAESTHAVKYI 111
Query: 126 HELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFNF 185
+ G I+++ + PL+NIA+ +R+ P +E+ +MGG + G GN T +AEFN
Sbjct: 112 IDTLMASDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAY-GTGNFTPSAEFNI 170
Query: 186 LTDPEAAHIVL 196
DPEAA +V
Sbjct: 171 FADPEAARVVF 181
>pdb|3FZ0|A Chain A, Inosine-Guanosine Nucleoside Hydrolase (Ig-Nh)
pdb|3FZ0|B Chain B, Inosine-Guanosine Nucleoside Hydrolase (Ig-Nh)
pdb|3FZ0|C Chain C, Inosine-Guanosine Nucleoside Hydrolase (Ig-Nh)
pdb|3FZ0|D Chain D, Inosine-Guanosine Nucleoside Hydrolase (Ig-Nh)
Length = 360
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 144/322 (44%), Gaps = 39/322 (12%)
Query: 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRK 65
RK+I+D D G DDA A++L + +E+IAIT GN E+++ ++N+ ++L +
Sbjct: 7 RKLIIDTDCGGDDAIAIMLAMTQPD---VEVIAITVVWGNVEVNQGMENIGKLLDLYD-A 62
Query: 66 NIPVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVAL 125
+IP ++G PL+ + + ++ FG GF L H + + L
Sbjct: 63 DIPFFRGAEGPLVGERETVQWGGFGSDGFGDAGFPP---SQRVALQPKRHAA-LEILKIL 118
Query: 126 HELTREFKGLISVLCLAPLTNIALTLRLFPQ-FAQNAKE----LYIMGGNHKGVGNVTSA 180
E + ++ L PLTN+AL LRL P F++ + + IM G + GN A
Sbjct: 119 EEAEPSDDVVYQLVALGPLTNVALALRLNPDLFSKLGTDTIPGIVIMNGTSESKGNSNMA 178
Query: 181 AEFNFLTDPEAAHIVL--GGFHGPICILPWEACLGIDISYEWRYDTLGASDAP------- 231
AEFN DPEA +VL G+ P+ ++ WE + +++ + + P
Sbjct: 179 AEFNSHCDPEAGVVVLQHKGWKCPVQLVNWEVTVNSPMTWGFYDKLVNRESTPNGRVAVN 238
Query: 232 ------YIS-LLNRLE----------RGISDRAISMGFNKWVPADSALCTCFLDEKAITV 274
+I L RLE R + A + V D+ + +++
Sbjct: 239 QNKWQEFIEKLFQRLEAFTRIHDDGTRADTGDAEATQDVTCVVPDAVAVLVAIRPESVLD 298
Query: 275 SYETTCSVELAGEITRGQACVD 296
S+ T +VEL G TRG C+D
Sbjct: 299 SFLTYVTVELHGRETRGATCID 320
>pdb|2C40|A Chain A, Crystal Structure Of Inosine-Uridine Preferring Nucleoside
Hydrolase From Bacillus Anthracis At 2.2a Resolution
pdb|2C40|B Chain B, Crystal Structure Of Inosine-Uridine Preferring Nucleoside
Hydrolase From Bacillus Anthracis At 2.2a Resolution
Length = 312
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 87/219 (39%), Gaps = 35/219 (15%)
Query: 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRK 65
+KV + D G+DD +L L+L Q + +E+ ++ + L + +++ FG+
Sbjct: 2 KKVYFNHDGGVDDLVSLFLLL---QMDNVELTGVSVIPADCYLEPAMSASRKIIDRFGKN 58
Query: 66 NIPVYKGVS--KPLIPKDLS-HKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAV 122
I V S K PKD H + D L ++G HV A
Sbjct: 59 TIEVAASNSRGKNPFPKDWRMHAFYVDALPILNESG------------KVVTHVAAKPAH 106
Query: 123 VALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTS--- 179
L E + + ++L PLT++A L P K L MGG + GNV
Sbjct: 107 HHLIETLLQTEEKTTLLFTGPLTDLARALYEAPIIENKIKRLVWMGGTFRTAGNVHEPEH 166
Query: 180 --AAEFNFLTDPEAAHIVLGGFHGPICILPWEACLGIDI 216
AE+N DPEA V WEA + ID+
Sbjct: 167 DGTAEWNSFWDPEAVARV------------WEANIEIDL 193
>pdb|3EPW|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase In Complex With The Inhibitor
(2r,3r,4s)-1-[(4-Hydroxy-5h-Pyrrolo[3,2-
D]pyrimidin-7-Yl)methyl]-2-(Hydroxymethyl)pyrrolidin-3,
4-Diol
pdb|3EPW|B Chain B, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase In Complex With The Inhibitor
(2r,3r,4s)-1-[(4-Hydroxy-5h-Pyrrolo[3,2-
D]pyrimidin-7-Yl)methyl]-2-(Hydroxymethyl)pyrrolidin-3,
4-Diol
pdb|3EPX|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase In Complex With The Inhibitor
(2r,3r,4s)-2-(Hydroxymethyl)-1-(Quinolin-8-
Ylmethyl)pyrrolidin-3,4-Diol
pdb|3EPX|B Chain B, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase In Complex With The Inhibitor
(2r,3r,4s)-2-(Hydroxymethyl)-1-(Quinolin-8-
Ylmethyl)pyrrolidin-3,4-Diol
Length = 338
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 85/216 (39%), Gaps = 43/216 (19%)
Query: 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAF--- 62
+ V+LD D +DD A++L+ +K + +I C D C V F
Sbjct: 14 KNVVLDHDGNLDDFVAMVLLASNTEK--VRLIGALC----------TDADCFVENGFNVT 61
Query: 63 GRKNIPVYKGVSKPLIPKDLS-----HKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVE 117
G+ ++ ++ PL P S + + +W KN + D L+ +VE
Sbjct: 62 GKIMCLMHNNMNLPLFPIGKSAATAVNPFPKEW-RCLAKN------MDDMPILNIPENVE 114
Query: 118 NISAVVA----------LHELTREFKGLISVLCLAPLTNIALTLRLF-PQFAQNAKELYI 166
+ A L +L + +++ PL+N+A + + +F +E I
Sbjct: 115 LWDKIKAENEKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVI 174
Query: 167 MGGNHKGVGNV-----TSAAEFNFLTDPEAAHIVLG 197
MGG GNV AE+N DP +A V G
Sbjct: 175 MGGAVDVRGNVFLPSTDGTAEWNIYWDPASAKTVFG 210
>pdb|1HP0|A Chain A, Crystal Structure Of An Inosine-Adenosine-Guanosine-
Preferring Nucleoside Hydrolase From Trypanosoma Vivax
In Complex With The Substrate Analogue 3-Deaza-Adenosine
pdb|1HP0|B Chain B, Crystal Structure Of An Inosine-Adenosine-Guanosine-
Preferring Nucleoside Hydrolase From Trypanosoma Vivax
In Complex With The Substrate Analogue 3-Deaza-Adenosine
pdb|1HOZ|A Chain A, Crystal Structure Of An
Inosine-Adenosine-Guanosine-Preferring Nucleoside
Hydrolase From Trypanosoma Vivax
pdb|1HOZ|B Chain B, Crystal Structure Of An
Inosine-Adenosine-Guanosine-Preferring Nucleoside
Hydrolase From Trypanosoma Vivax
pdb|2FF1|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase Soaked With Immucillinh
pdb|2FF1|B Chain B, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase Soaked With Immucillinh
pdb|2FF2|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase Co-Crystallized With Immucillinh
pdb|2FF2|B Chain B, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase Co-Crystallized With Immucillinh
Length = 339
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 85/216 (39%), Gaps = 43/216 (19%)
Query: 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAF--- 62
+ V+LD D +DD A++L+ +K + +I C D C V F
Sbjct: 15 KNVVLDHDGNLDDFVAMVLLASNTEK--VRLIGALC----------TDADCFVENGFNVT 62
Query: 63 GRKNIPVYKGVSKPLIPKDLS-----HKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVE 117
G+ ++ ++ PL P S + + +W KN + D L+ +VE
Sbjct: 63 GKIMCLMHNNMNLPLFPIGKSAATAVNPFPKEW-RCLAKN------MDDMPILNIPENVE 115
Query: 118 NISAVVA----------LHELTREFKGLISVLCLAPLTNIALTLRLF-PQFAQNAKELYI 166
+ A L +L + +++ PL+N+A + + +F +E I
Sbjct: 116 LWDKIKAENEKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVI 175
Query: 167 MGGNHKGVGNV-----TSAAEFNFLTDPEAAHIVLG 197
MGG GNV AE+N DP +A V G
Sbjct: 176 MGGAVDVRGNVFLPSTDGTAEWNIYWDPASAKTVFG 211
>pdb|1R4F|A Chain A, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Trp260ala Mutant In
Complex With 3- Deaza-Adenosine
pdb|1R4F|B Chain B, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Trp260ala Mutant In
Complex With 3- Deaza-Adenosine
Length = 339
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 85/216 (39%), Gaps = 43/216 (19%)
Query: 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAF--- 62
+ V+LD D +DD A++L+ +K + +I C D C V F
Sbjct: 15 KNVVLDHDGNLDDFVAMVLLASNTEK--VRLIGALC----------TDADCFVENGFNVT 62
Query: 63 GRKNIPVYKGVSKPLIPKDLS-----HKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVE 117
G+ ++ ++ PL P S + + +W KN + D L+ +VE
Sbjct: 63 GKIMCLMHNNMNLPLFPIGKSAATAVNPFPKEW-RCLAKN------MDDMPILNIPENVE 115
Query: 118 NISAVVA----------LHELTREFKGLISVLCLAPLTNIALTLRLF-PQFAQNAKELYI 166
+ A L +L + +++ PL+N+A + + +F +E I
Sbjct: 116 LWDKIKAENEKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVI 175
Query: 167 MGGNHKGVGNV-----TSAAEFNFLTDPEAAHIVLG 197
MGG GNV AE+N DP +A V G
Sbjct: 176 MGGAVDVRGNVFLPSTDGTAEWNIYWDPASAKTVFG 211
>pdb|3B9G|A Chain A, Crystal Structure Of Loop Deletion Mutant Of Trypanosoma
Vivax Nucleoside Hydrolase (3gtvnh) In Complex With Immh
pdb|3B9G|B Chain B, Crystal Structure Of Loop Deletion Mutant Of Trypanosoma
Vivax Nucleoside Hydrolase (3gtvnh) In Complex With Immh
Length = 328
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 85/216 (39%), Gaps = 43/216 (19%)
Query: 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAF--- 62
+ V+LD D +DD A++L+ +K + +I C D C V F
Sbjct: 14 KNVVLDHDGNLDDFVAMVLLASNTEK--VRLIGALC----------TDADCFVENGFNVT 61
Query: 63 GRKNIPVYKGVSKPLIPKDLS-----HKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVE 117
G+ ++ ++ PL P S + + +W KN + D L+ +VE
Sbjct: 62 GKIMCLMHNNMNLPLFPIGKSAATAVNPFPKEW-RCLAKN------MDDMPILNIPENVE 114
Query: 118 NISAVVA----------LHELTREFKGLISVLCLAPLTNIALTLRLF-PQFAQNAKELYI 166
+ A L +L + +++ PL+N+A + + +F +E I
Sbjct: 115 LWDKIKAENEKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVI 174
Query: 167 MGGNHKGVGNV-----TSAAEFNFLTDPEAAHIVLG 197
MGG GNV AE+N DP +A V G
Sbjct: 175 MGGAVDVRGNVFLPSTDGTAEWNIYWDPASAKTVFG 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,836,147
Number of Sequences: 62578
Number of extensions: 406234
Number of successful extensions: 955
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 912
Number of HSP's gapped (non-prelim): 17
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)