Query psy17834
Match_columns 325
No_of_seqs 184 out of 1179
Neff 7.8
Searched_HMMs 46136
Date Sat Aug 17 00:11:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1957 URH1 Inosine-uridine n 100.0 1.5E-80 3.3E-85 571.6 31.5 302 4-324 1-307 (311)
2 PRK09955 rihB ribonucleoside h 100.0 4.1E-79 8.9E-84 571.5 34.7 303 3-324 1-306 (313)
3 PLN02717 uridine nucleosidase 100.0 1.4E-76 3E-81 556.1 33.9 301 6-324 1-313 (316)
4 cd02649 nuc_hydro_CeIAG nuc_hy 100.0 1.4E-75 3E-80 546.4 34.2 302 6-321 1-306 (306)
5 PRK10768 ribonucleoside hydrol 100.0 9.8E-76 2.1E-80 548.2 33.1 297 5-324 2-300 (304)
6 cd02651 nuc_hydro_IU_UC_XIUA n 100.0 2.9E-75 6.3E-80 545.3 33.1 299 7-324 1-302 (302)
7 PRK10443 rihA ribonucleoside h 100.0 1E-74 2.2E-79 542.4 34.1 301 5-324 2-307 (311)
8 cd02653 nuc_hydro_3 NH_3: A su 100.0 9E-75 2E-79 544.4 33.5 299 7-324 1-306 (320)
9 PTZ00313 inosine-adenosine-gua 100.0 5E-73 1.1E-77 533.9 34.4 307 5-324 2-323 (326)
10 cd02650 nuc_hydro_CaPnhB NH_hy 100.0 2.1E-72 4.5E-77 526.5 32.9 297 7-321 1-304 (304)
11 cd02654 nuc_hydro_CjNH nuc_hyd 100.0 4.4E-71 9.6E-76 519.3 31.0 295 7-320 1-318 (318)
12 PF01156 IU_nuc_hydro: Inosine 100.0 2.4E-71 5.2E-76 521.5 22.1 305 5-324 1-309 (312)
13 cd00455 nuc_hydro nuc_hydro: N 100.0 4.8E-69 1E-73 501.4 32.4 293 8-320 1-295 (295)
14 cd02647 nuc_hydro_TvIAG nuc_hy 100.0 4.5E-69 9.7E-74 503.3 30.6 294 6-321 1-308 (312)
15 cd02648 nuc_hydro_1 NH_1: A su 100.0 1.8E-67 3.9E-72 494.2 31.2 285 5-299 1-349 (367)
16 KOG2938|consensus 100.0 2.3E-55 4.9E-60 409.6 24.6 307 2-323 18-331 (350)
17 cd02652 nuc_hydro_2 NH_2: A su 100.0 2.2E-46 4.7E-51 345.6 22.3 243 8-286 1-265 (293)
18 PF07632 DUF1593: Protein of u 97.7 8.1E-05 1.7E-09 67.5 6.5 140 7-170 1-159 (260)
19 PF10609 ParA: ParA/MinD ATPas 75.9 6.3 0.00014 29.5 4.6 54 7-70 3-57 (81)
20 KOG2938|consensus 74.4 1.2 2.7E-05 42.5 0.6 78 120-198 193-285 (350)
21 COG0482 TrmU Predicted tRNA(5- 65.9 27 0.00058 33.6 7.6 62 3-71 1-68 (356)
22 PF14097 SpoVAE: Stage V sporu 63.8 7.6 0.00017 33.1 3.1 27 19-48 71-97 (180)
23 PF03054 tRNA_Me_trans: tRNA m 63.3 24 0.00052 34.0 6.8 59 6-71 1-67 (356)
24 PRK13509 transcriptional repre 56.6 50 0.0011 29.9 7.5 72 120-210 103-174 (251)
25 PF00455 DeoRC: DeoR C termina 56.3 53 0.0012 27.6 7.1 75 120-211 29-103 (161)
26 PRK09802 DNA-binding transcrip 53.3 63 0.0014 29.7 7.7 74 120-210 116-189 (269)
27 COG1206 Gid NAD(FAD)-utilizing 45.3 5.1 0.00011 38.1 -0.9 26 125-150 119-145 (439)
28 PF01168 Ala_racemase_N: Alani 44.9 1.4E+02 0.003 25.8 8.3 41 4-47 109-157 (218)
29 cd02072 Glm_B12_BD B12 binding 43.0 36 0.00077 27.8 3.8 42 34-77 51-92 (128)
30 KOG3022|consensus 38.0 42 0.00092 31.2 3.8 57 6-70 158-214 (300)
31 PRK02628 nadE NAD synthetase; 37.3 95 0.0021 32.6 6.9 57 5-65 361-423 (679)
32 cd02065 B12-binding_like B12 b 37.2 99 0.0022 23.9 5.6 62 9-79 32-93 (125)
33 PF09078 CheY-binding: CheY bi 34.4 34 0.00074 24.5 2.1 19 6-24 36-54 (65)
34 COG1927 Mtd Coenzyme F420-depe 33.6 1.6E+02 0.0036 26.2 6.6 75 121-208 18-95 (277)
35 TIGR00640 acid_CoA_mut_C methy 30.0 63 0.0014 26.3 3.3 41 34-76 54-94 (132)
36 COG1349 GlpR Transcriptional r 29.5 2.6E+02 0.0055 25.4 7.6 75 120-211 101-175 (253)
37 TIGR00044 pyridoxal phosphate 28.2 2.4E+02 0.0053 25.0 7.1 40 5-47 120-169 (229)
38 COG0489 Mrp ATPases involved i 28.0 1.5E+02 0.0032 27.2 5.8 55 6-70 168-222 (265)
39 COG3854 SpoIIIAA ncharacterize 27.5 1E+02 0.0023 28.2 4.4 39 2-46 216-254 (308)
40 PRK10411 DNA-binding transcrip 26.7 2.8E+02 0.006 24.9 7.3 72 120-209 103-174 (240)
41 COG0603 Predicted PP-loop supe 26.4 3.6E+02 0.0078 24.2 7.7 56 5-65 2-57 (222)
42 CHL00181 cbbX CbbX; Provisiona 25.2 1.2E+02 0.0026 28.1 4.7 46 120-165 146-191 (287)
43 TIGR01849 PHB_depoly_PhaZ poly 24.7 1.3E+02 0.0028 29.5 5.0 57 120-176 154-213 (406)
44 PRK14665 mnmA tRNA-specific 2- 24.7 3.3E+02 0.0071 26.2 7.7 58 3-64 3-61 (360)
45 PRK10681 DNA-binding transcrip 24.7 3.4E+02 0.0073 24.5 7.5 73 120-209 102-174 (252)
46 PRK14664 tRNA-specific 2-thiou 24.6 2.3E+02 0.0051 27.3 6.7 56 1-64 1-56 (362)
47 PF07002 Copine: Copine; Inte 24.3 4E+02 0.0088 22.0 7.3 87 47-160 12-101 (146)
48 cd00553 NAD_synthase NAD+ synt 23.8 2.9E+02 0.0063 24.7 6.9 58 5-65 23-80 (248)
49 KOG2805|consensus 23.5 3.3E+02 0.0071 26.0 7.0 59 1-63 1-67 (377)
50 PF00135 COesterase: Carboxyle 23.3 2.3E+02 0.005 28.0 6.7 73 120-200 191-267 (535)
51 TIGR00420 trmU tRNA (5-methyla 22.9 3.1E+02 0.0067 26.3 7.1 57 7-70 2-67 (352)
52 COG2185 Sbm Methylmalonyl-CoA 22.1 1.7E+02 0.0036 24.4 4.4 42 34-77 64-105 (143)
53 PF06508 QueC: Queuosine biosy 21.9 2.8E+02 0.0061 24.3 6.2 50 10-64 4-53 (209)
54 cd06820 PLPDE_III_LS_D-TA_like 21.9 4E+02 0.0086 25.1 7.7 40 5-47 121-169 (353)
55 cd02067 B12-binding B12 bindin 21.3 2.8E+02 0.0061 21.4 5.6 58 11-76 34-91 (119)
56 PRK10906 DNA-binding transcrip 21.3 5.4E+02 0.012 23.2 8.2 73 120-209 101-173 (252)
57 TIGR02881 spore_V_K stage V sp 21.2 1.4E+02 0.003 26.9 4.3 44 120-163 128-171 (261)
58 cd01992 PP-ATPase N-terminal d 20.7 2.4E+02 0.0053 23.5 5.5 57 7-63 1-58 (185)
59 PRK02261 methylaspartate mutas 20.6 1.6E+02 0.0035 24.0 4.1 42 34-77 55-96 (137)
No 1
>COG1957 URH1 Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.5e-80 Score=571.60 Aligned_cols=302 Identities=34% Similarity=0.495 Sum_probs=265.6
Q ss_pred CCceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCcc
Q psy17834 4 YPRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVYKGVSKPLIPKDLS 83 (325)
Q Consensus 4 ~~~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~~G~~~pl~~~~~~ 83 (325)
+++|||||||+|+||++||+|||++|+ +||+|||+|+||++++++++|++.+|+.+|+.+||||+|+.+||.++...
T Consensus 1 ~~~kiiiD~DpG~DDaiAlllal~~p~---i~l~giTtv~GNv~le~t~~Na~~~l~~~g~~~iPV~~Ga~~Pl~r~~~~ 77 (311)
T COG1957 1 MMRKIIIDCDPGHDDAIALLLALASPE---IDLLGITTVAGNVPLEQTTRNALSVLELLGRADIPVYAGAARPLLREPIT 77 (311)
T ss_pred CCceEEEeCCCChhHHHHHHHHhcCCC---ceEEEEEEecCcccHhHHHHHHHHHHHHcCCCCCCeecCCCCCcCCCCcc
Confidence 468999999999999999999999998 99999999999999999999999999999999999999999999987654
Q ss_pred CccccccccccCCCCCCCCCCCCCCCcccccCCCCCcHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCcchhhccCc
Q psy17834 84 HKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKE 163 (325)
Q Consensus 84 ~~~a~~~~~~hG~dglg~~~~~~p~~~~~~~~~~~~~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~~~~~i~~ 163 (325)
+ +.+||.+||++..+ | .|.. ..+.. +|+++|+|+++++|++||||++|||||||+|++++|+++++||+
T Consensus 78 ---a---~~iHG~~Gl~~~~l--p-~~~~-~~~~~-~A~~~ii~~l~~~~g~vtlva~GPLTNiAlAl~~~P~i~~~ik~ 146 (311)
T COG1957 78 ---A---PEIHGESGLGGPEL--P-EPTR-KLESK-HAVDAIIDTLMANPGEVTLVATGPLTNIALALRKDPEIAKRIKE 146 (311)
T ss_pred ---h---hhhcCCcCCCCCCC--C-cccc-cccCC-cHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhCcchhhhhcE
Confidence 2 78999999999855 5 3333 34454 99999999999999999999999999999999999999999999
Q ss_pred EEEecCcccCCCCCCccccccCCCCHHHHHHHHhcCCCCeEEecCCccccccCChHHHHHHhCCCChHHHHHHHHHHH--
Q psy17834 164 LYIMGGNHKGVGNVTSAAEFNFLTDPEAAHIVLGGFHGPICILPWEACLGIDISYEWRYDTLGASDAPYISLLNRLER-- 241 (325)
Q Consensus 164 iviMGG~~~~~GN~~~~aE~N~~~DPeAA~~Vl~s~g~~i~~vpld~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 241 (325)
||||||++..+||++|.||||+|+|||||++||+| |.|++|+|||+|++...+.+. ++.+.+.+++..+++.++++
T Consensus 147 iviMGGa~~~~GNvtp~AEfNi~~DPeAA~iVf~s-g~~i~mv~LdvT~q~~~t~~~-~~~~~~~~~~~~~~~~d~l~~~ 224 (311)
T COG1957 147 IVIMGGAFFVPGNVTPAAEFNIWVDPEAAKIVFTS-GWPITMVPLDVTHQVLLTPDV-LARLRAAGGPAAELVADLLDFY 224 (311)
T ss_pred EEEecCccCCCCCcCcchhhhhccCHHHHHHHHhC-CCceEEechhhhhhhcCCHHH-HHHHHHhCCccHHHHHHHHHHH
Confidence 99999999989999999999999999999999997 999999999999988866543 34555445544444444333
Q ss_pred -HHhhhhhhcCCCCCCCCcHHHHHHHhcCCceeeEEEeeEEEEeeCCcccceEEEecCC--CCCCCeEEEeccCHHHHHH
Q psy17834 242 -GISDRAISMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVDVVH--SKTPNVRMIDTVDSRLLKD 318 (325)
Q Consensus 242 -~~~~~~~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~~v~V~~~g~~~~G~tv~d~~~--~~~~~v~v~~~vd~~~f~~ 318 (325)
.+|. ..+|.+|.++||++|++|+++|++++ ++++.|+||++|++|+|+|++|+.. ++++|++|+..+|.++|++
T Consensus 225 ~~~~~--~~~g~~g~~~hD~~a~a~l~~p~l~~-~~~~~V~Ve~~~~lt~G~Tv~d~~~~~~~~~n~~v~~~vD~~~f~~ 301 (311)
T COG1957 225 LAYYK--SRQGLDGAPLHDPLAVAYLLDPELFT-TREANVDVETAGGLTRGMTVVDWRGVLGKPPNAQVAVDVDVEGFLD 301 (311)
T ss_pred HHHHh--hccCCCCCCcccHHHHHHHhChhhhc-ceEEEEEEEeCCCCcCcceEEEecccCCCCCCeEEeeccCHHHHHH
Confidence 2343 24466888999999999999999986 7899999999999999999999984 4569999999999999999
Q ss_pred HHhhhh
Q psy17834 319 MLLWIK 324 (325)
Q Consensus 319 ~l~~~~ 324 (325)
++.+++
T Consensus 302 ~i~~~l 307 (311)
T COG1957 302 LILEAL 307 (311)
T ss_pred HHHHHH
Confidence 999875
No 2
>PRK09955 rihB ribonucleoside hydrolase 2; Provisional
Probab=100.00 E-value=4.1e-79 Score=571.54 Aligned_cols=303 Identities=24% Similarity=0.371 Sum_probs=264.2
Q ss_pred CCCceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCc
Q psy17834 3 IYPRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVYKGVSKPLIPKDL 82 (325)
Q Consensus 3 ~~~~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~~G~~~pl~~~~~ 82 (325)
|+++|||||||+|+||++||+|||.+|+ +||+|||||+||++++++++|++++|+.+|+ +||||+|+.+||.++..
T Consensus 1 m~~~kvIiDtD~G~DDa~Al~~al~~p~---~ev~gIttv~GN~~~~~~~~Nal~~l~~~g~-~IPV~~Ga~~PL~~~~~ 76 (313)
T PRK09955 1 MEKRKIILDCDPGHDDAIAMMMAAKHPA---IDLLGITIVAGNQTLDKTLINGLNVCQKLEI-NVPVYAGMPQPIMRQQI 76 (313)
T ss_pred CCCceEEEECCCChHHHHHHHHHhcCCC---cEEEEEEecCCCcCHHHHHHHHHHHHHHhCC-CCCEEeCCCCCCCCCCC
Confidence 3568999999999999999999999998 9999999999999999999999999999997 89999999999988643
Q ss_pred cCccccccccccCCCCCCCCCCCCCCCcccccCCCCCcHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCcchhhccC
Q psy17834 83 SHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAK 162 (325)
Q Consensus 83 ~~~~a~~~~~~hG~dglg~~~~~~p~~~~~~~~~~~~~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~~~~~i~ 162 (325)
. + ..+||.+|||+..+ | .+.. ..+++ +|+++|+++++++|++||||++|||||||+|++++|++.++||
T Consensus 77 ~---~---~~~HG~~Glg~~~~--~-~~~~-~~~~~-~A~~~i~~~~~~~p~eitiva~GPLTNlA~al~~~P~~~~~i~ 145 (313)
T PRK09955 77 V---A---DNIHGETGLDGPVF--E-PLTR-QAEST-HAVKYIIDTLMASDGDITLVPVGPLSNIAVAMRMQPAILPKIR 145 (313)
T ss_pred C---c---cccCCCCCCCCCCC--C-Cccc-ccCCC-cHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHChHHHHhCC
Confidence 2 2 67999999999766 4 2222 24454 8999999999999999999999999999999999999999999
Q ss_pred cEEEecCcccCCCCCCccccccCCCCHHHHHHHHhcCCCCeEEecCCccccccCChHHHHHHhCCCChHHHHHHHHHHHH
Q psy17834 163 ELYIMGGNHKGVGNVTSAAEFNFLTDPEAAHIVLGGFHGPICILPWEACLGIDISYEWRYDTLGASDAPYISLLNRLERG 242 (325)
Q Consensus 163 ~iviMGG~~~~~GN~~~~aE~N~~~DPeAA~~Vl~s~g~~i~~vpld~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (325)
+||+|||++ +.||++|.+|||||+|||||++||+| |+|++|+|||+|++..++.++. +++.+.+++.++++.++.+.
T Consensus 146 ~iviMGG~~-~~GN~tp~aEfN~~~DPeAA~iV~~s-~~~i~~v~lDvT~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~ 222 (313)
T PRK09955 146 EIVLMGGAY-GTGNFTPSAEFNIFADPEAARVVFTS-GVPLVMMGLDLTNQTVCTPDVI-ARMERAGGPAGELFSDIMNF 222 (313)
T ss_pred EEEEeCCCC-CCCCCCCCeeeccccCHHHHHHHHhC-CCCEEEeccccccceecCHHHH-HHHHhcCChHHHHHHHHHHH
Confidence 999999998 47999999999999999999999996 9999999999999999998653 55655567777777665442
Q ss_pred Hhhhh-hhcCCCCCCCCcHHHHHHHhcCCceeeEEEeeEEEEeeCCcccceEEEecCC--CCCCCeEEEeccCHHHHHHH
Q psy17834 243 ISDRA-ISMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVDVVH--SKTPNVRMIDTVDSRLLKDM 319 (325)
Q Consensus 243 ~~~~~-~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~~v~V~~~g~~~~G~tv~d~~~--~~~~~v~v~~~vd~~~f~~~ 319 (325)
++... ..++.+++++||++|++++++|++|+ .++.+|+||++|+++||+|++|+.+ ++++|++|+.++|.++|+++
T Consensus 223 ~~~~~~~~~g~~g~~lhD~la~a~~~~P~l~~-~~~~~v~Ve~~g~~t~G~tv~d~~~~~~~~~n~~v~~~vD~~~f~~~ 301 (313)
T PRK09955 223 TLKTQFENYGLAGGPVHDATCIGYLINPDGIK-TQEMYVEVDVNSGPCYGRTVCDELGVLGKPANTKVGITIDTDWFWGL 301 (313)
T ss_pred HHHHHHhhcCCCCCccChHHHHHHHcChhhEE-EEEeeEEEEeCCCCCCceEEecccccCCCCCCCEEeeecCHHHHHHH
Confidence 11110 24566789999999999999999996 7889999999999999999999764 34589999999999999999
Q ss_pred Hhhhh
Q psy17834 320 LLWIK 324 (325)
Q Consensus 320 l~~~~ 324 (325)
|++++
T Consensus 302 ~~~~l 306 (313)
T PRK09955 302 VEECV 306 (313)
T ss_pred HHHHH
Confidence 99875
No 3
>PLN02717 uridine nucleosidase
Probab=100.00 E-value=1.4e-76 Score=556.12 Aligned_cols=301 Identities=29% Similarity=0.405 Sum_probs=262.5
Q ss_pred ceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCC-ccC
Q psy17834 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVYKGVSKPLIPKD-LSH 84 (325)
Q Consensus 6 ~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~~G~~~pl~~~~-~~~ 84 (325)
+|||||||+|+||++||+|||.+|+ ++|+|||+|+||++++++++|++++|+++|+.+||||+|+.+||.++. ...
T Consensus 1 ~~vIiDtD~GiDDa~Al~~al~~~~---~~l~gIt~v~GN~~~~~~~~na~~ll~~~g~~diPV~~Ga~~pl~~~~~~~~ 77 (316)
T PLN02717 1 KKLIIDTDPGIDDAMAILMALRSPE---VEVIGLTTIFGNVTTKLATRNALHLLEMAGRPDVPVAEGSHEPLKGGTKPRI 77 (316)
T ss_pred CcEEEECCCChHHHHHHHHHhcCCC---ceEEEEEEccCCcCHHHHHHHHHHHHHHcCCCCCCEEeCCCCCCCCCCCCcC
Confidence 5899999999999999999999998 999999999999999999999999999999999999999999999853 221
Q ss_pred ccccccccccCCCCCCCCCCCCCCCcccccCCCCCcHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCcchhhccCcE
Q psy17834 85 KYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKEL 164 (325)
Q Consensus 85 ~~a~~~~~~hG~dglg~~~~~~p~~~~~~~~~~~~~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~~~~~i~~i 164 (325)
+ ..+||.||||+..+ | .+.. ..+.+ +|+++|+++++++|++||||++|||||||+||+++|+++++||+|
T Consensus 78 --~---~~~hG~dGlg~~~~--p-~~~~-~~~~~-~A~~~i~~~~~~~~~~itiva~GPLTNlA~al~~~P~~~~~ik~i 147 (316)
T PLN02717 78 --A---DFVHGSDGLGNTNL--P-PPKG-KKIEK-SAAEFLVEKVSEYPGEVTVVALGPLTNLALAIKLDPSFAKKVGQI 147 (316)
T ss_pred --C---ccCCCCCCCCCCCC--C-CCCC-CcCCC-CHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHHHChHHHhhcCEE
Confidence 2 67899999999876 4 2322 24554 999999999999999999999999999999999999999999999
Q ss_pred EEecCcccCCCCCCccccccCCCCHHHHHHHHhcCCCCeEEecCCccccccCChHHHHHHhCCCChHHHHHHHHHHHHHh
Q psy17834 165 YIMGGNHKGVGNVTSAAEFNFLTDPEAAHIVLGGFHGPICILPWEACLGIDISYEWRYDTLGASDAPYISLLNRLERGIS 244 (325)
Q Consensus 165 viMGG~~~~~GN~~~~aE~N~~~DPeAA~~Vl~s~g~~i~~vpld~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (325)
|+|||++.+.||++|.||||||+|||||++||+| |.|++|+|||+|++..++.++. +++.+.+++..+++.++.+. |
T Consensus 148 viMGG~~~~~GN~tp~aEfN~~~DPeAA~iVl~s-~~~i~~v~ldvt~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~-~ 224 (316)
T PLN02717 148 VVLGGAFFVNGNVNPAAEANIFGDPEAADIVFTS-GADITVVGINVTTQVVLTDADL-EELRDSKGKYAQFLCDICKF-Y 224 (316)
T ss_pred EEeCCCcCCCCCCCchhhhhhhcCHHHHHHHHhC-CCCeEEEcccccCceecCHHHH-HHHHHcCChHHHHHHHHHHH-H
Confidence 9999999888999999999999999999999997 8999999999999999998764 55655566777777665442 2
Q ss_pred hhh--hhcCCCCCCCCcHHHHHHHhcCCceeeEEEeeEEEEeeCCcccceEEEecCC---------CCCCCeEEEeccCH
Q psy17834 245 DRA--ISMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVDVVH---------SKTPNVRMIDTVDS 313 (325)
Q Consensus 245 ~~~--~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~~v~V~~~g~~~~G~tv~d~~~---------~~~~~v~v~~~vd~ 313 (325)
..+ ..++.+++++||++|++++++|++|+ .++.+++|+++| ++||+|++|++. ++++|++|+.++|.
T Consensus 225 ~~~~~~~~~~~~~~~~D~la~a~~~~P~~~~-~~~~~v~Ve~~g-~trG~tv~d~~~~~~~~~~~~~~~~n~~v~~~vD~ 302 (316)
T PLN02717 225 RDWHRKSYGIDGIYLHDPTALLAAVRPSLFT-YKEGVVRVETEG-ICRGLTLFDNGLKRWNGENAWTGRPPVKVAVTVDA 302 (316)
T ss_pred HHHHHhhcCCCcccCCcHHHhHHhcCccceE-EEEecEEEEeCC-CCCceEeeeccccccccccccCCCCCCEEeeecCH
Confidence 221 23466788999999999999999996 678999999997 799999999731 23479999999999
Q ss_pred HHHHHHHhhhh
Q psy17834 314 RLLKDMLLWIK 324 (325)
Q Consensus 314 ~~f~~~l~~~~ 324 (325)
++|+++|++++
T Consensus 303 ~~f~~~~~~~l 313 (316)
T PLN02717 303 PAVVELVKERL 313 (316)
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 4
>cd02649 nuc_hydro_CeIAG nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the purine-preferring nucleoside hydrolase (IAG-NH) from C. elegans and the salivary purine nucleosidase from Aedes aegypti. C. elegans IAG-NH exhibits a high affinity for the substrate analogue p-nitrophenylriboside (p-NPR).
Probab=100.00 E-value=1.4e-75 Score=546.44 Aligned_cols=302 Identities=45% Similarity=0.743 Sum_probs=259.2
Q ss_pred ceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCccCc
Q psy17834 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVYKGVSKPLIPKDLSHK 85 (325)
Q Consensus 6 ~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~~G~~~pl~~~~~~~~ 85 (325)
+|||||||+|+||++||++||.+|+ +||+|||+++||++.+++++|++++|+++|+.+||||+|+.+||.++...
T Consensus 1 ~kviiDtD~g~DD~~Al~~al~~~~---~~l~gIt~v~GN~~~~~~~~na~~~l~~~g~~diPV~~Ga~~pl~~~~~~-- 75 (306)
T cd02649 1 RKLIIDTDCGGDDAWALLMALASPN---VEVLAITCVHGNTNVEQVVKNALRVLEACGRRDIPVYRGASKPLLGPGPT-- 75 (306)
T ss_pred CeEEEECCCChHHHHHHHHHhcCCC---ceEEEEEEccCCcCHHHHHHHHHHHHHHhCCCCCCEecCCCccCCCCCCC--
Confidence 4899999999999999999999998 99999999999999999999999999999999999999999999886542
Q ss_pred cccccccccCCCCCCCCCCCCCCCcccccCCCCCcHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCcchhhccCcEE
Q psy17834 86 YSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELY 165 (325)
Q Consensus 86 ~a~~~~~~hG~dglg~~~~~~p~~~~~~~~~~~~~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~~~~~i~~iv 165 (325)
+..+||.+|||+..+ |..+.....+.+ +|+++|+++++++|++||||++|||||||+||+++|+++++||+||
T Consensus 76 ----~~~~hG~~Glg~~~~--p~~~~~~~~~~~-~a~~~i~~~~~~~~~~vtiva~GPLTNlA~al~~~p~~~~~i~~iv 148 (306)
T cd02649 76 ----AAYFHGKDGFGDVGF--PEPKDELELQKE-HAVDAIIRLVREYPGEITLVALGPLTNLALAYRLDPSLPQKIKRLY 148 (306)
T ss_pred ----ccccCCCCCCCCCCC--CCCcccCCcCCC-CHHHHHHHHHHhCCCCeEEEecccHHHHHHHHHHChHHHHhcCeEE
Confidence 267899999999876 422211234554 8999999999999999999999999999999999999999999999
Q ss_pred EecCcccCCCCCCccccccCCCCHHHHHHHHhcCCCCeEEecCCccc-cccCChHHHHHHhCCCChHHHHHHHHHHHHHh
Q psy17834 166 IMGGNHKGVGNVTSAAEFNFLTDPEAAHIVLGGFHGPICILPWEACL-GIDISYEWRYDTLGASDAPYISLLNRLERGIS 244 (325)
Q Consensus 166 iMGG~~~~~GN~~~~aE~N~~~DPeAA~~Vl~s~g~~i~~vpld~t~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (325)
+|||++.+.||++|.||||||+|||||++||+|+|+|++|+|||+|+ +..++.+.. +++.+. ++..+++.++...++
T Consensus 149 iMGG~~~~~GN~~~~aEfN~~~DPeAA~~Vl~s~~~~i~lv~ldvt~~~~~~~~~~~-~~l~~~-~~~~~~~~~~~~~~~ 226 (306)
T cd02649 149 IMGGNREGVGNTTPAAEFNFHVDPEAAHIVLNSFGCPITIVPWETTLLAFPLDWEFE-DKWANR-LEKALFAESLNRREY 226 (306)
T ss_pred EeCCCccCCCCCCcccccccccCHHHHHHHHhcCCCCEEEEccccccceeecCHHHH-HHHHhc-ChHHHHHHHHHHHHH
Confidence 99999988999999999999999999999999768999999999999 899998653 555433 356666665544222
Q ss_pred hhh-hhcCCCCCCCCcHHHHHHHhcCCceeeEEEeeEEEEeeCCcccceEEEecCC--CCCCCeEEEeccCHHHHHHHHh
Q psy17834 245 DRA-ISMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVDVVH--SKTPNVRMIDTVDSRLLKDMLL 321 (325)
Q Consensus 245 ~~~-~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~~v~V~~~g~~~~G~tv~d~~~--~~~~~v~v~~~vd~~~f~~~l~ 321 (325)
... ...+..++++||++|++++++|++|+..+..+|+|+++|+++||+|++|+.+ ..++|++|+.++|.++|+++|+
T Consensus 227 ~~~~~~~~~~g~~~hD~lava~~~~P~l~~~~~~~~v~Ve~~g~~~~G~tv~d~~~~~~~~~n~~v~~~vD~~~f~~~~~ 306 (306)
T cd02649 227 AFASEGLGGDGWVPCDALAVAAALDPSIITRRLTYAVDVELHGELTRGQMVVDWLGTLKKKPNARVITKIDREKFKELLY 306 (306)
T ss_pred HHHHhhcCCCCCCCCcHHHHHHHcCHhHEEEEEeeeEEEEECCCCCcceEEEeccccCCCCCCCEEehhcCHHHHHHHhC
Confidence 110 1345678899999999999999999754456799999999999999999864 3358999999999999999874
No 5
>PRK10768 ribonucleoside hydrolase RihC; Provisional
Probab=100.00 E-value=9.8e-76 Score=548.18 Aligned_cols=297 Identities=27% Similarity=0.362 Sum_probs=260.4
Q ss_pred CceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCccC
Q psy17834 5 PRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVYKGVSKPLIPKDLSH 84 (325)
Q Consensus 5 ~~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~~G~~~pl~~~~~~~ 84 (325)
++|||||||+|+||++||+|||++|+ ++|+|||+|+||++++++++|++++|+.+| .+||||+|+.+||.++...
T Consensus 2 ~~kvIiDtD~g~DDa~Al~~al~~p~---~~v~git~v~GN~~~~~~~~na~~~l~~~g-~dIPV~~Ga~~pl~~~~~~- 76 (304)
T PRK10768 2 RLPIILDTDPGIDDAVAIAAALFAPE---LDLKLITTVAGNVSVEKTTRNALKLLHFFN-SDVPVAQGAAKPLVRPLRD- 76 (304)
T ss_pred CCCEEEECCCCHHHHHHHHHHhcCCC---ceEEEEEecCCcccHHHHHHHHHHHHHHhC-CCCeEEeCCccccCCCCCC-
Confidence 47999999999999999999999998 999999999999999999999999999999 8999999999999875432
Q ss_pred ccccccccccCCCCCCCCCCCCCCCcccccCCCCCcHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCcchhhccCcE
Q psy17834 85 KYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKEL 164 (325)
Q Consensus 85 ~~a~~~~~~hG~dglg~~~~~~p~~~~~~~~~~~~~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~~~~~i~~i 164 (325)
+ ..+||.+|||+..+ | .+.. ....+ +|+++|+++++++|++||||++|||||||+|++++|+++++||+|
T Consensus 77 --~---~~~hG~~Gl~~~~~--p-~~~~-~~~~~-~A~~~i~~~~~~~~~~itila~GPLTNlA~al~~~P~i~~~i~~i 146 (304)
T PRK10768 77 --A---ASVHGESGMEGYDF--P-EHTR-KPLSI-PAVEAMRDALMNAPEPVTLVAIGPLTNIALLLSTYPEVKPYIKRI 146 (304)
T ss_pred --c---ccccCCCCCCCCCC--C-CCCC-CCCCc-cHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHHHChhhHhhcCEE
Confidence 2 67899999999876 4 2322 24454 899999999999999999999999999999999999999999999
Q ss_pred EEecCcccCCCCCCccccccCCCCHHHHHHHHhcCCCCeEEecCCccccccCChHHHHHHhCCCChHHHHHHHHHHHHHh
Q psy17834 165 YIMGGNHKGVGNVTSAAEFNFLTDPEAAHIVLGGFHGPICILPWEACLGIDISYEWRYDTLGASDAPYISLLNRLERGIS 244 (325)
Q Consensus 165 viMGG~~~~~GN~~~~aE~N~~~DPeAA~~Vl~s~g~~i~~vpld~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (325)
|+|||++ +.||++|.+|||||+|||||++||+| |+|++|+|||+|++..++.++. +++++. ++..+++.+..+. |
T Consensus 147 viMGG~~-~~GN~t~~aEfN~~~DPeAA~iVl~s-~~~i~~vpldvt~~~~~t~~~~-~~l~~~-~~~~~~~~~~~~~-~ 221 (304)
T PRK10768 147 VLMGGSA-GRGNVTPNAEFNIAVDPEAAAIVFRS-GIPIVMCGLDVTNQALLTPDYL-ATLPEL-NRTGKMLHALFSH-Y 221 (304)
T ss_pred EEecCCc-CcCCCCccchhccCCCHHHHHHHHhC-CCCeEEeccccceeeecCHHHH-HHHHhc-ChHHHHHHHHHHH-H
Confidence 9999998 57999999999999999999999996 9999999999999999998764 556543 5667777766553 3
Q ss_pred hhhhhcCCCCCCCCcHHHHHHHhcCCceeeEEEeeEEEEeeCCcccceEEEecCC--CCCCCeEEEeccCHHHHHHHHhh
Q psy17834 245 DRAISMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVDVVH--SKTPNVRMIDTVDSRLLKDMLLW 322 (325)
Q Consensus 245 ~~~~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~~v~V~~~g~~~~G~tv~d~~~--~~~~~v~v~~~vd~~~f~~~l~~ 322 (325)
.. ....+++++||++|++++++|++++ .++.+|+||++|+++||+|++|+.+ +.++|++|+.++|.++|+++|.+
T Consensus 222 ~~--~~~~~g~~~hD~la~a~~~~P~~~~-~~~~~v~Ve~~g~~trG~tv~d~~~~~~~~~~~~v~~~vd~~~f~~~~~~ 298 (304)
T PRK10768 222 RS--GSMQTGLRMHDVCAIAYLLRPELFT-LKPCFVDVETQGEFTAGATVVDIDGRLGKPANAQVALDIDVDGFQKWFAE 298 (304)
T ss_pred Hh--hcccCCCCcCcHHHhhheeCcccEE-EEEecEEEEeCCCCCCceEEEeccccCCCCCCcEEEeecCHHHHHHHHHH
Confidence 21 1123578899999999999999986 7899999999998899999999764 23589999999999999999998
Q ss_pred hh
Q psy17834 323 IK 324 (325)
Q Consensus 323 ~~ 324 (325)
++
T Consensus 299 ~l 300 (304)
T PRK10768 299 VL 300 (304)
T ss_pred HH
Confidence 75
No 6
>cd02651 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains proteins similar to nucleoside hydrolases which hydrolyze both pyrimidine and purine ribonucleosides: the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the inosine-uridine-xanthosine preferring nucleoside hydrolase RihC from Escherichia coli and the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium. This group also contains proteins similar to the pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases URH1 from Saccharomyces cerevisiae, E. coli RihA and E. coli RihB. E. coli RihA is equally efficient with uridine a
Probab=100.00 E-value=2.9e-75 Score=545.26 Aligned_cols=299 Identities=32% Similarity=0.450 Sum_probs=261.3
Q ss_pred eEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCccCcc
Q psy17834 7 KVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVYKGVSKPLIPKDLSHKY 86 (325)
Q Consensus 7 kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~~G~~~pl~~~~~~~~~ 86 (325)
|||||||+|+||++||+|||++|+ +||+|||+|+||++.+++++|++++|+.+|+++||||+|+.+||.++...
T Consensus 1 kvIiDtD~g~DDa~Al~~al~~~~---~~l~gIt~v~Gn~~~~~~~~na~~ll~~~g~~diPV~~Ga~~pl~~~~~~--- 74 (302)
T cd02651 1 PIIIDCDPGHDDAVAILLALFHPE---LDLLGITTVAGNVPLEKTTRNALKLLTLLGRTDVPVAAGAARPLVRPLIT--- 74 (302)
T ss_pred CeEEECCCCHHHHHHHHHHhcCCC---ceEEEEEeccCeecHHHHHHHHHHHHHHhCCCCCcEEcCCCcCcCCCCCC---
Confidence 699999999999999999999998 99999999999999999999999999999999999999999999876432
Q ss_pred ccccccccCCCCCCCCCCCCCCCcccccCCCCCcHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCcchhhccCcEEE
Q psy17834 87 SFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYI 166 (325)
Q Consensus 87 a~~~~~~hG~dglg~~~~~~p~~~~~~~~~~~~~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~~~~~i~~ivi 166 (325)
+ ..+||.+|||+..+ | .+.. ..+.+ +|+++|+++++++|++||||++|||||||+|++++|++.++||+|||
T Consensus 75 ~---~~~hG~~Gl~~~~~--p-~~~~-~~~~~-~a~~~i~~~~~~~~~evtiva~GPLTNlA~al~~~P~~~~~ik~ivi 146 (302)
T cd02651 75 A---SDIHGESGLDGADL--P-PPPR-RPEDI-HAVDAIIDTLRASPEPITLVATGPLTNIALLLRKYPELAERIKEIVL 146 (302)
T ss_pred C---cCCCCCCCCCCCCC--C-CCCC-CcCCC-cHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHChhhHhhcCEEEE
Confidence 2 67899999999866 4 2222 23454 99999999999999999999999999999999999999999999999
Q ss_pred ecCcccCCCCCCccccccCCCCHHHHHHHHhcCCCCeEEecCCccccccCChHHHHHHhCCCChHHHHHHHHHHHHHhhh
Q psy17834 167 MGGNHKGVGNVTSAAEFNFLTDPEAAHIVLGGFHGPICILPWEACLGIDISYEWRYDTLGASDAPYISLLNRLERGISDR 246 (325)
Q Consensus 167 MGG~~~~~GN~~~~aE~N~~~DPeAA~~Vl~s~g~~i~~vpld~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (325)
|||++ ..||++|.+|||||+|||||++||++ +.|++++|||+|++..++.++. +++.+.+++..+++.+.... |.+
T Consensus 147 MGG~~-~~GN~tp~aEfN~~~DPeAA~~Vl~s-~~~i~~v~ldvt~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~-~~~ 222 (302)
T cd02651 147 MGGAL-GRGNITPAAEFNIFVDPEAAKIVFNS-GIPITMVPLDVTHKALATPEVI-ERIRALGNPVGKMLAELLDF-FAE 222 (302)
T ss_pred ecCCc-CCCCCChHHHhhcccCHHHHHHHHhC-CCCeEEeccceeeeeccCHHHH-HHHHHcCChHHHHHHHHHHH-HHH
Confidence 99998 68999999999999999999999997 9999999999999999998764 66666667788887766542 221
Q ss_pred h-hhcCCCCCCCCcHHHHHHHhcCCceeeEEEeeEEEEeeCCcccceEEEecCC--CCCCCeEEEeccCHHHHHHHHhhh
Q psy17834 247 A-ISMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVDVVH--SKTPNVRMIDTVDSRLLKDMLLWI 323 (325)
Q Consensus 247 ~-~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~~v~V~~~g~~~~G~tv~d~~~--~~~~~v~v~~~vd~~~f~~~l~~~ 323 (325)
. .....+++++||++|++++++|++|+ +++.+++|+++|+++||+|++|+.+ +.++|++|++++|.++|+++|.++
T Consensus 223 ~~~~~~~~~~~l~D~la~~~~~~p~~~~-~~~~~v~Ve~~g~~~rG~tv~d~~~~~~~~~~~~v~~~vd~~~f~~~l~~~ 301 (302)
T cd02651 223 TYGSAFTEGPPLHDPCAVAYLLDPELFT-TKRANVDVETEGELTRGRTVVDLRGVTGRPANAQVAVDVDVEKFWDLLLEA 301 (302)
T ss_pred HHHhhccCCCCCCcHHHhHHhcCccceE-EEEeeEEEEcCCCCCCceEEEeccccCCCCCCcEEeeecCHHHHHHHHHHh
Confidence 1 01113678899999999999999986 6789999999998999999998764 235799999999999999999876
Q ss_pred h
Q psy17834 324 K 324 (325)
Q Consensus 324 ~ 324 (325)
.
T Consensus 302 l 302 (302)
T cd02651 302 L 302 (302)
T ss_pred C
Confidence 3
No 7
>PRK10443 rihA ribonucleoside hydrolase 1; Provisional
Probab=100.00 E-value=1e-74 Score=542.42 Aligned_cols=301 Identities=29% Similarity=0.378 Sum_probs=263.8
Q ss_pred CceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCccC
Q psy17834 5 PRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVYKGVSKPLIPKDLSH 84 (325)
Q Consensus 5 ~~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~~G~~~pl~~~~~~~ 84 (325)
++|||||||+|+||++||+|||++|+ ++|+|||+++||++.+++++|++++|+++|+.+||||+|+.+||.++...
T Consensus 2 ~~~vIiDtD~g~DDa~AL~~al~~~~---~~l~gIt~v~Gn~~~~~~~~na~~~l~~~g~~diPV~~Ga~~pl~~~~~~- 77 (311)
T PRK10443 2 ALPIILDCDPGHDDAIALVLALASPE---LDVKAVTTSAGNQTPEKTLRNALRMLTLLNRTDIPVAGGAVKPLMRELII- 77 (311)
T ss_pred CCcEEEECCCChHHHHHHHHHhcCCC---ceEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCCCCCcC-
Confidence 47999999999999999999999998 99999999999999999999999999999999999999999999875433
Q ss_pred ccccccccccCCCCCCCCCCCCCCCcccccCCCCCcHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCcchhhccCcE
Q psy17834 85 KYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKEL 164 (325)
Q Consensus 85 ~~a~~~~~~hG~dglg~~~~~~p~~~~~~~~~~~~~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~~~~~i~~i 164 (325)
+..+||.+|+|+..+ | .+.. ..+++ +|+++|+++++++|++||||++|||||||+|++++|++.++||+|
T Consensus 78 -----~~~~hG~~Gl~~~~~--p-~~~~-~~~~~-~a~~~i~~~~~~~~~~itiva~GPLTNlA~al~~~P~~~~~i~~i 147 (311)
T PRK10443 78 -----ADNVHGESGLDGPAL--P-EPTF-APQNC-TAVELMAKTLRESAEPVTLVSTGPQTNVALLLASHPELHSKIARI 147 (311)
T ss_pred -----ccccCCCCCCCCCCC--C-CCcc-CCCCc-cHHHHHHHHHHhCCCCeEEEEccchHHHHHHHHHCchhhhhhCEE
Confidence 167899999998765 4 2332 24454 899999999999999999999999999999999999999999999
Q ss_pred EEecCcccCCCCCCccccccCCCCHHHHHHHHhcCCCCeEEecCCccccccCChHHHHHHhCCCChHHHHHHHHHHHHH-
Q psy17834 165 YIMGGNHKGVGNVTSAAEFNFLTDPEAAHIVLGGFHGPICILPWEACLGIDISYEWRYDTLGASDAPYISLLNRLERGI- 243 (325)
Q Consensus 165 viMGG~~~~~GN~~~~aE~N~~~DPeAA~~Vl~s~g~~i~~vpld~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 243 (325)
|+|||++. .||++|.+|||||+|||||++||++ ++|++|+|||+|++..++.+. ++++...+++..+++.++...+
T Consensus 148 viMGG~~~-~Gn~~~~aEfN~~~DPeAA~~Vl~s-~~~i~~vpldvt~~~~~t~~~-~~~l~~~~~~~~~~l~~~~~~~~ 224 (311)
T PRK10443 148 VIMGGAMG-LGNWTPAAEFNIYVDPEAAEIVFQS-GIPIVMAGLDVTHKAQIMDED-IERIRAIGNPVATIVAELLDFFM 224 (311)
T ss_pred EEccCCCC-CCCCCcchhhccCcCHHHHHHHHhC-CCCEEEecccccceeecCHHH-HHHHHhcCChHHHHHHHHHHHHH
Confidence 99999985 6999999999999999999999997 999999999999999898765 4666666778888777665421
Q ss_pred --hhhhhhcCCCCCCCCcHHHHHHHhcCCceeeEEEeeEEEEeeCCcccceEEEecCC--CCCCCeEEEeccCHHHHHHH
Q psy17834 244 --SDRAISMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVDVVH--SKTPNVRMIDTVDSRLLKDM 319 (325)
Q Consensus 244 --~~~~~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~~v~V~~~g~~~~G~tv~d~~~--~~~~~v~v~~~vd~~~f~~~ 319 (325)
|.. ..++..++++||++|++++++|++++ +++.+|+||++|+++||+|++|+.+ +.++|++|++++|.++|+++
T Consensus 225 ~~~~~-~~~~~~g~~lhD~lava~~~~P~~~~-~~~~~v~Ve~~g~~trG~tv~~~~~~~~~~~n~~v~~~vd~~~f~~~ 302 (311)
T PRK10443 225 EYHKD-EKWGFVGAPLHDPCTIAWLLKPELFT-TVERWVGVETQGEYTQGMTVVDYYQLTGNKPNATVLVDVDRQGFVDL 302 (311)
T ss_pred HHhHh-hhCCCCCCCCCCHHHhHHhcCcceEE-EEEeCEEEEcCCCCCCceEEEeccccCCCCCCCEEEeecCHHHHHHH
Confidence 211 13456788999999999999999986 7889999999999999999998653 33579999999999999999
Q ss_pred Hhhhh
Q psy17834 320 LLWIK 324 (325)
Q Consensus 320 l~~~~ 324 (325)
|++++
T Consensus 303 l~~~l 307 (311)
T PRK10443 303 LAERL 307 (311)
T ss_pred HHHHH
Confidence 99875
No 8
>cd02653 nuc_hydro_3 NH_3: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=9e-75 Score=544.44 Aligned_cols=299 Identities=29% Similarity=0.387 Sum_probs=260.6
Q ss_pred eEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCccCcc
Q psy17834 7 KVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVYKGVSKPLIPKDLSHKY 86 (325)
Q Consensus 7 kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~~G~~~pl~~~~~~~~~ 86 (325)
|||||||+|+||++||+|||++|+ +||+|||+++||++++++++|++++|+.+|+.+||||+|+.+||.++...
T Consensus 1 kvIiDtD~GiDDa~AL~~al~~p~---iel~gIt~v~GN~~~~~~~~Na~~ll~~~g~~dIPV~~Ga~~pl~~~~~~--- 74 (320)
T cd02653 1 KVIIDCDPGIDDALALLYLLASPD---LDVVGITTTAGNVPVEQVAANALGVLELLGRTDIPVYLGADKPLAGPLTT--- 74 (320)
T ss_pred CEEEECCCChHHHHHHHHHhhCCC---CeEEEEEEcCCccCHHHHHHHHHHHHHHcCCCCCcEEeCCCccCCCCCCC---
Confidence 699999999999999999999998 99999999999999999999999999999999999999999999876432
Q ss_pred ccccccccCCCCCCCCCCCCCCCcccccCCCCCcHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCcchhhccCcEEE
Q psy17834 87 SFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYI 166 (325)
Q Consensus 87 a~~~~~~hG~dglg~~~~~~p~~~~~~~~~~~~~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~~~~~i~~ivi 166 (325)
+ ..+||.+|||+..+ | .+.. ..+.+ +|+++|+++++++| +||||++|||||||+|++++|++.++||+||+
T Consensus 75 ~---~~~hG~dGlg~~~~--p-~~~~-~~~~~-~A~~~i~~~~~~~~-eitiva~GPLTNlA~al~~~P~~~~~ik~ivi 145 (320)
T cd02653 75 A---QDTHGPDGLGYAEL--P-ASTR-TLSDE-SAAQAWVDLARAHP-DLIGLATGPLTNLALALREEPELPRLLRRLVI 145 (320)
T ss_pred c---ccccCCCCCCCCCC--C-CCCC-CCCCC-CHHHHHHHHHHhCC-CeEEEECCchHHHHHHHHHChHHHHhcCEEEE
Confidence 2 67999999998766 4 2222 24455 99999999999999 99999999999999999999999999999999
Q ss_pred ecCcccCCCCCCccccccCCCCHHHHHHHHhcC---CCCeEEecCCccccccCChHHHHHHhCCCChHHHHHHHHHHHHH
Q psy17834 167 MGGNHKGVGNVTSAAEFNFLTDPEAAHIVLGGF---HGPICILPWEACLGIDISYEWRYDTLGASDAPYISLLNRLERGI 243 (325)
Q Consensus 167 MGG~~~~~GN~~~~aE~N~~~DPeAA~~Vl~s~---g~~i~~vpld~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (325)
|||++.++||++|.||||||+|||||++||+++ +.|++|+|||+|++..++.++. +++.+.+++..+++.+....
T Consensus 146 MGG~~~~~GN~tp~aEfN~~~DPeAA~iVl~s~~~~~~~i~~vplDvt~~~~~t~~~~-~~l~~~~~~~~~~~~~~~~~- 223 (320)
T cd02653 146 MGGAFNSRGNTSPVAEWNYWVDPEAAKEVLAAFGGHPVRPTICGLDVTRAVVLTPNLL-ERLARAKDSVGAFIEDALRF- 223 (320)
T ss_pred ECCCcCCCCCCCcHhHHhhhcCHHHHHHHHhccccCCCCeEEeccccceeeecCHHHH-HHHHhcCChHHHHHHHHHHH-
Confidence 999998889999999999999999999999975 6999999999999999998764 66766667777777665543
Q ss_pred hhhh--hhcCCCCCCCCcHHHHHHHhcCCceeeEEEeeEEEEeeCCcccceEEEecCC--CCCCCeEEEeccCHHHHHHH
Q psy17834 244 SDRA--ISMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVDVVH--SKTPNVRMIDTVDSRLLKDM 319 (325)
Q Consensus 244 ~~~~--~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~~v~V~~~g~~~~G~tv~d~~~--~~~~~v~v~~~vd~~~f~~~ 319 (325)
|.+. ...+..++++||++|++++++|++|+ +++.+++||++|.. +|+|++|+.+ .+++|++|+.++|.++|+++
T Consensus 224 ~~~~~~~~~~~~~~~lhD~lAva~~~~P~l~~-~~~~~v~Ve~~g~~-~G~tv~d~~~~~~~~~n~~v~~~vD~~~f~~~ 301 (320)
T cd02653 224 YFEFHWAYGHGYGAVIHDPLAAAVALNPNLAR-GRPAYVDVECTGVL-TGQTVVDWAGFWGKGANAEILTKVDSQDFMAL 301 (320)
T ss_pred HHHHHHhcCCCCCCCCChHHHHHHhcChhheE-EEEeeEEEEeCCCC-CceEEEeccccCCCCCCcEEeeccCHHHHHHH
Confidence 2211 11223467899999999999999985 78899999999986 5999999864 34589999999999999999
Q ss_pred Hhhhh
Q psy17834 320 LLWIK 324 (325)
Q Consensus 320 l~~~~ 324 (325)
|++++
T Consensus 302 ~~~~l 306 (320)
T cd02653 302 FIERV 306 (320)
T ss_pred HHHHH
Confidence 98864
No 9
>PTZ00313 inosine-adenosine-guanosine-nucleoside hydrolase; Provisional
Probab=100.00 E-value=5e-73 Score=533.89 Aligned_cols=307 Identities=16% Similarity=0.208 Sum_probs=251.1
Q ss_pred CceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCC-CCCcccCCCCCCCCCCcc
Q psy17834 5 PRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRK-NIPVYKGVSKPLIPKDLS 83 (325)
Q Consensus 5 ~~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~-~IPV~~G~~~pl~~~~~~ 83 (325)
++|||||||+|+||++||+|||++|+ ++||+|||||+||++++++++|++++|+++|+. +|||+.|+..|+.+....
T Consensus 2 ~~~vIiD~D~GiDDa~Al~~al~~~~--~~~v~gIT~v~GNv~~~~~~~Na~~vl~~~g~~~dvPv~~ga~~~~~~~~~~ 79 (326)
T PTZ00313 2 PKPVILDHDGNHDDLVALALLLGNPE--KVKVIGCICTDADCFVDDAFNVTGKLMCMMHAREATPLFPIGKSSFKGVNPF 79 (326)
T ss_pred CCCEEEeCCCCHHHHHHHHHHhcCCc--CcEEEEEEEecCCccHHHHHHHHHHHHHHhCCCCCCCeeeecCCcccCCCCC
Confidence 47999999999999999999999984 499999999999999999999999999999997 899999999998763211
Q ss_pred Ccccccccc--ccCCCCCCCCCCCCCCCcc---cccCCCC-CcHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCc-c
Q psy17834 84 HKYSFDWLH--FFGKNGFGDIDLGDSDTLD---RSCHVEN-ISAVVALHELTREFKGLISVLCLAPLTNIALTLRLFP-Q 156 (325)
Q Consensus 84 ~~~a~~~~~--~hG~dglg~~~~~~p~~~~---~~~~~~~-~~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P-~ 156 (325)
. .+ .. .||.+|||+..+ |.... ....+.+ .+|+++|++++++||++||||++|||||||+||+++| +
T Consensus 80 ~-~~---~~~g~~G~~glg~~~~--p~~~~~~~~~~~~~~~~~a~~~i~~~i~~~p~eItiva~GPLTNlAlal~~~pp~ 153 (326)
T PTZ00313 80 P-SE---WRWSAKNMDDLPCLNI--PEHVAIWEKLKPENEALVGEELLADLVMSSPEKVTICVTGPLSNVAWCIEKYGEE 153 (326)
T ss_pred c-ch---heecccCCCCCCCCCC--CCccccccccCCccccchHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHHhCCHH
Confidence 1 01 12 378888888765 41111 0012221 1599999999999999999999999999999999996 9
Q ss_pred hhhccCcEEEecCcccCCCCC-----CccccccCCCCHHHHHHHHhcCCCCeEEecCCccccccCChHHHHHHhCCCCh-
Q psy17834 157 FAQNAKELYIMGGNHKGVGNV-----TSAAEFNFLTDPEAAHIVLGGFHGPICILPWEACLGIDISYEWRYDTLGASDA- 230 (325)
Q Consensus 157 ~~~~i~~iviMGG~~~~~GN~-----~~~aE~N~~~DPeAA~~Vl~s~g~~i~~vpld~t~~~~~~~~~~~~~~~~~~~- 230 (325)
+.++||+||||||++.++||+ +|.||||||+|||||++||+|.+.|++|+|||+|++..++.+.. +++.+.++
T Consensus 154 ~~~~ik~iviMGG~~~~~GN~~~~~~tp~AEfN~~~DPeAA~iV~~s~~~~i~~v~LdvT~~~~~t~~~~-~~l~~~~~~ 232 (326)
T PTZ00313 154 FTKKVEECVIMGGAVDVGGNVFLPGTDGSAEWNIYWDPPAAKTVLMCPHIRKVLFSLDSTNSVPVTSEVV-KKFGAQNKY 232 (326)
T ss_pred HHHhcCEEEEeCCcccCCCCccCCCCCcccchhhhcCHHHHHHHHhCCCCCEEEeccccccceeCCHHHH-HHHHhcCcc
Confidence 999999999999999888998 79999999999999999999734999999999999999998653 44543333
Q ss_pred HHHHHHHHHHHHH-hhhhhhcCCCCCCCCcHHHHHHHhcCCceeeEEEeeEEEEeeCCcccceEEEecCCCCCCCeEEEe
Q psy17834 231 PYISLLNRLERGI-SDRAISMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVDVVHSKTPNVRMID 309 (325)
Q Consensus 231 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~~v~V~~~g~~~~G~tv~d~~~~~~~~v~v~~ 309 (325)
+..+++.++.... +... ..+.+++++||++|++++++|++|+ .++.+|+|+++|+++||+|+++..+ +++++|+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~hD~lA~a~~~~Pel~~-~~~~~v~Ve~~~~~t~G~tv~~~~~--~~~~~V~~ 308 (326)
T PTZ00313 233 LLSQFVGSTWAMCTHHEL-LRPGDGYYAWDVLTAAYVIERNLAE-LEPVPLEVVVEKAKNEGRTRRAAEG--AACTYVAK 308 (326)
T ss_pred hHHHHHHHHHhhhhhhhh-hcCCCCCcCcHHHHHHHhcChheEE-EEEEEEEEEeCCCCCCceEEeCCCC--CCceEEEe
Confidence 4566655543211 1110 1133678999999999999999995 7889999999998999999987542 36899999
Q ss_pred ccCHHHHHHHHhhhh
Q psy17834 310 TVDSRLLKDMLLWIK 324 (325)
Q Consensus 310 ~vd~~~f~~~l~~~~ 324 (325)
++|.++|+++|++++
T Consensus 309 ~vd~~~f~~~~~~~l 323 (326)
T PTZ00313 309 NTNAELFYDMVLDSA 323 (326)
T ss_pred cCCHHHHHHHHHHHH
Confidence 999999999999875
No 10
>cd02650 nuc_hydro_CaPnhB NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB). Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=2.1e-72 Score=526.46 Aligned_cols=297 Identities=32% Similarity=0.424 Sum_probs=254.9
Q ss_pred eEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCccCcc
Q psy17834 7 KVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVYKGVSKPLIPKDLSHKY 86 (325)
Q Consensus 7 kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~~G~~~pl~~~~~~~~~ 86 (325)
|||||||+|+||++||+|||.+|+ ++|+|||+++||++.+++++|++++|+.+|+.+||||+|+++|+.++....
T Consensus 1 kvIiDtD~g~DD~~AL~~al~~p~---~~v~gIt~~~Gn~~~~~~~~na~~~l~~~g~~diPV~~G~~~pl~~~~~~~-- 75 (304)
T cd02650 1 KLILDTDPGIDDAMALAYALAHPD---VDLIGVTTVYGNVTIETATRNALALLELFGRPDVPVAEGAAKPLTRPPFRI-- 75 (304)
T ss_pred CEEEECCCCHHHHHHHHHHhcCCC---CEEEEEEEccCCcCHHHHHHHHHHHHHHhCCCCCCEEcCCCCCCCCCCcCC--
Confidence 699999999999999999999998 999999999999999999999999999999999999999999998765411
Q ss_pred ccccccccCCCCCCCCCCCCCCCcccccCCCCCcHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCcchhhccCcEEE
Q psy17834 87 SFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYI 166 (325)
Q Consensus 87 a~~~~~~hG~dglg~~~~~~p~~~~~~~~~~~~~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~~~~~i~~ivi 166 (325)
+ ..+||.||||+..+ |. +.. ..+.+ +|+++|+++++++|++||||++|||||||+|++++|++.++||+||+
T Consensus 76 ~---~~~hg~dGlg~~~~--p~-~~~-~~~~~-~A~~~l~~~~~~~~~~vtivaiGPLTNlA~al~~~P~i~~~ik~ivi 147 (304)
T cd02650 76 A---TFVHGDNGLGDVEL--PA-PPR-QPEDE-SAADFLIELANEYPGELTLVAVGPLTNLALALARDPDFAKLVKQVVV 147 (304)
T ss_pred c---CCCCCCCCCCCCCC--CC-CCC-CcCcc-CHHHHHHHHHHhCCCCeEEEECCcHHHHHHHHHHCcHHHhhcCEEEE
Confidence 2 67899999999876 52 222 24454 89999999999999999999999999999999999999999999999
Q ss_pred ecCcccCCCCCCccccccCCCCHHHHHHHHhcCCCCeEEecCCccccccCChHHHHHHhCCCChHHHHHHHHHHHHHhhh
Q psy17834 167 MGGNHKGVGNVTSAAEFNFLTDPEAAHIVLGGFHGPICILPWEACLGIDISYEWRYDTLGASDAPYISLLNRLERGISDR 246 (325)
Q Consensus 167 MGG~~~~~GN~~~~aE~N~~~DPeAA~~Vl~s~g~~i~~vpld~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (325)
|||++...||++|.+|||||+||+||++||+| ++|++++|||+|++..++.++. +.+.+.+++.++++.++... |..
T Consensus 148 MGG~~~~~GN~~p~aEfN~~~DP~AA~iVl~s-~~~i~~vpldvt~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~-~~~ 224 (304)
T cd02650 148 MGGAFTVPGNVTPAAEANIHGDPEAADIVFTA-GADLTMVGLDVTTQTLLTREDL-DELRDSGGKAGQFLADMLDY-YID 224 (304)
T ss_pred eCccccCCCCCCchHHhhcccCHHHHHHHHhC-CCCeEEeCCceeeeEecCHHHH-HHHHhcCChHHHHHHHHHHH-HHH
Confidence 99999888999999999999999999999996 9999999999999999998764 56666667777877766543 221
Q ss_pred h--hhcCCCCCCCCcHHHHHHHhcCCceeeEEEeeEEEEeeCCcccceEEEecCCC----CCCCeEEEeccCH-HHHHHH
Q psy17834 247 A--ISMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVDVVHS----KTPNVRMIDTVDS-RLLKDM 319 (325)
Q Consensus 247 ~--~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~~v~V~~~g~~~~G~tv~d~~~~----~~~~v~v~~~vd~-~~f~~~ 319 (325)
+ ..++..++++||++|++++++|++|+ +++.+++|+++| ++||+|++|+++. .++|.++...+|. ++|+++
T Consensus 225 ~~~~~~~~~g~~l~D~la~~~~~~P~~~~-~~~~~v~Ve~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~~~d~~~~f~~~ 302 (304)
T cd02650 225 FYQESPGLRGCALHDPLAVAAAVDPSLFT-TREGVVRVETEG-PTRGRTIGDRDGRRFWDSSPNATVAVDVDVDERFLKR 302 (304)
T ss_pred HHHhccCCCcccCCcHHHHHhhcCccceE-EEEeeEEEEeCC-CCCceEEEeccccccccCCCCceEEEEEChhHHHHHH
Confidence 1 12355678899999999999999986 678999999987 6999999997642 3467555555555 999998
Q ss_pred Hh
Q psy17834 320 LL 321 (325)
Q Consensus 320 l~ 321 (325)
|+
T Consensus 303 ~~ 304 (304)
T cd02650 303 LM 304 (304)
T ss_pred hC
Confidence 74
No 11
>cd02654 nuc_hydro_CjNH nuc_hydro_CjNH. Nucleoside hydrolases similar to Campylobacter jejuni nucleoside hydrolase. This group contains eukaryotic and bacterial proteins similar to C. jejuni nucleoside hydrolase. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. C. jejuni nucleoside hydrolase is inactive against natural nucleosides or against common nucleoside analogues.
Probab=100.00 E-value=4.4e-71 Score=519.32 Aligned_cols=295 Identities=29% Similarity=0.378 Sum_probs=244.7
Q ss_pred eEEEeCCCC----chHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCc
Q psy17834 7 KVILDVDAG----IDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVYKGVSKPLIPKDL 82 (325)
Q Consensus 7 kvIiDtD~G----~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~~G~~~pl~~~~~ 82 (325)
|||||||+| +||++||+|||++|+ +||+|||+|+||++++++++|++++|+.+|+.+||||+|+.+||.++..
T Consensus 1 kvIiDtD~G~~~d~DDa~Al~lal~~p~---~el~gIt~v~GN~~~~~~~~Na~~ll~~~g~~dIPV~~Ga~~pl~~~~~ 77 (318)
T cd02654 1 KVILDNDIAMGRDTDDGLALALLLWSPE---VELLGLSAVSGNCWLSAVTYNVLRMLELAGADAIPVYAGANTPLGRTNR 77 (318)
T ss_pred CEEEEcCCCCCCCccHHHHHHHHhhCCC---ceEEEEEEecCCCCHHHHHHHHHHHHHHhCCCCCCEEECCCccccCCcc
Confidence 699999999 999999999999998 9999999999999999999999999999999999999999999987643
Q ss_pred cCccccccccccCCCCCCCCCCCCCCCcc------cccCCCCCcHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCcc
Q psy17834 83 SHKYSFDWLHFFGKNGFGDIDLGDSDTLD------RSCHVENISAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQ 156 (325)
Q Consensus 83 ~~~~a~~~~~~hG~dglg~~~~~~p~~~~------~~~~~~~~~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~ 156 (325)
.. +.+...||.+|+++..+ |.... ......+ +|+++|+++++++|++||||++|||||||+|++++|+
T Consensus 78 ~~---~~~~~~~G~~g~~~~~~--p~~~~~~~~~~~~~~~~~-~A~~~i~~~~~~~p~~itiva~GPLTNlA~al~~~P~ 151 (318)
T cd02654 78 AF---HAWESLYGAYLWQGAWS--PEYSDMYTNASIIRNASI-PAALFMIEMVRKHPHEVSIVAAGPLTNLALALRIDPD 151 (318)
T ss_pred cc---ccccccCCCcccCCCCC--CCccccccccccCCCCCc-cHHHHHHHHHHhCCCceEEEECCcHHHHHHHHHHChh
Confidence 21 11256899999987654 31110 0123344 8999999999999999999999999999999999999
Q ss_pred hhhccCcEEEecCcccCCC-CCC-c-cccccCCCCHHHHHHHHhcCCCCeEEecCCccccccCChHHHHHHhCCCChHHH
Q psy17834 157 FAQNAKELYIMGGNHKGVG-NVT-S-AAEFNFLTDPEAAHIVLGGFHGPICILPWEACLGIDISYEWRYDTLGASDAPYI 233 (325)
Q Consensus 157 ~~~~i~~iviMGG~~~~~G-N~~-~-~aE~N~~~DPeAA~~Vl~s~g~~i~~vpld~t~~~~~~~~~~~~~~~~~~~~~~ 233 (325)
+.++||+||+|||++...| |++ + .||||||+|||||++||+| +.|++|+|||+|++..++.+.. +.+ +++.
T Consensus 152 ~~~~i~~iviMGG~~~~~g~~~~~~~~aEfN~~~DPeAA~iVl~s-~~~~~~v~ldvT~~~~~~~~~~-~~~----~~~~ 225 (318)
T cd02654 152 FAPLAKELVIMGGYLDDIGEFVNRHYASDFNLIMDPEAASIVLTA-PWKSITIPGNVTNRTCLTPEQI-KAD----DPLR 225 (318)
T ss_pred HHHhCCEEEEeCCCccCCCCcCCCCCCcceeeccCHHHHHHHHhC-CCCEEEeCcccccceeCCHHHH-hcc----CHHH
Confidence 9999999999999986555 666 3 8999999999999999997 9999999999999888887653 333 3445
Q ss_pred HHHHHHHH---HHhhhhhhcCC-CCCCCCcHHHHHHHhcCCceeeEEEe-eEEEEeeCCcccceEEEecCCC-----CCC
Q psy17834 234 SLLNRLER---GISDRAISMGF-NKWVPADSALCTCFLDEKAITVSYET-TCSVELAGEITRGQACVDVVHS-----KTP 303 (325)
Q Consensus 234 ~~~~~~~~---~~~~~~~~~~~-~~~~~~D~la~a~~~~P~~~~~~~~~-~v~V~~~g~~~~G~tv~d~~~~-----~~~ 303 (325)
+++.+..+ .+|.. .++. +++++||++|++++++|++|+. ++. +|+||++|. +||+|++|+... +++
T Consensus 226 ~~~~~~~~~~~~~~~~--~~~~~~g~~~hD~lava~~~~P~l~~~-~~~~~v~Ve~~~~-~~G~tv~d~~~~~~~~~~~~ 301 (318)
T cd02654 226 DFIRETLDLPIDYAKE--FVGTGDGLPMWDELASAVALDPELATS-SETFYIDVQTDSD-GGGQLIWPEDLLLAKGLRPY 301 (318)
T ss_pred HHHHHHHHHHHHHHHH--hcCCCCCCCCchHHHHHHHcCHhHccc-eEeEEEEEEeCCC-cCCeEEeecccCCCCCCCCC
Confidence 55544432 22221 2232 5789999999999999999974 455 999999886 999999987642 247
Q ss_pred CeEEEeccCHHHHHHHH
Q psy17834 304 NVRMIDTVDSRLLKDML 320 (325)
Q Consensus 304 ~v~v~~~vd~~~f~~~l 320 (325)
|++|+.++|.++|+++|
T Consensus 302 n~~v~~~vD~~~f~~~~ 318 (318)
T cd02654 302 HVKVITAVDVAAFLNLI 318 (318)
T ss_pred CCEEeecccHHHHHhhC
Confidence 99999999999999875
No 12
>PF01156 IU_nuc_hydro: Inosine-uridine preferring nucleoside hydrolase; InterPro: IPR001910 Inosine-uridine preferring nucleoside hydrolase (3.2.2.1 from EC) (IU-nucleoside hydrolase or IUNH) is an enzyme first identified in protozoan [] that catalyses the hydrolysis of all of the commonly occuring purine and pyrimidine nucleosides into ribose and the associated base, but has a preference for inosine and uridine as substrates. This enzyme is important for these parasitic organisms, which are deficient in de novo synthesis of purines, to salvage the host purine nucleosides. IUNH from Crithidia fasciculata has been sequenced and characterised, it is an homotetrameric enzyme of subunits of 34 Kd. An histidine has been shown to be important for the catalytic mechanism, it acts as a proton donor to activate the hypoxanthine leaving group. A highly conserved region located in the N-terminal extremity contains four conserved aspartates that have been shown [] to be located in the active site cavity. IUNH is evolutionary related to a number of uncharacterised proteins from various biological sources. This entry represents the structural domain of IUNH.; PDB: 1EZR_D 2MAS_B 1MAS_A 3MKM_C 3MKN_C 2C40_A 3T8J_A 2FF2_B 1KIE_A 2FF1_A ....
Probab=100.00 E-value=2.4e-71 Score=521.48 Aligned_cols=305 Identities=37% Similarity=0.535 Sum_probs=245.5
Q ss_pred CceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhC-CCCCCcccCCCCCCCCCCcc
Q psy17834 5 PRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFG-RKNIPVYKGVSKPLIPKDLS 83 (325)
Q Consensus 5 ~~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g-~~~IPV~~G~~~pl~~~~~~ 83 (325)
++|||||||+|+||++||++||.+|+ ++|+|||+++||++.+++++|++++|+.+| +.+||||+|+.+|+..+...
T Consensus 1 ~~~viiDtD~g~DD~~Al~~~l~~~~---i~i~gIt~~~Gn~~~~~~~~n~~~~l~~~g~~~~iPV~~G~~~pl~~~~~~ 77 (312)
T PF01156_consen 1 MKKVIIDTDPGIDDALALALALASPE---IEILGITTVFGNVSVEQAARNALRLLELAGGRDDIPVYKGADRPLVRPPEY 77 (312)
T ss_dssp -EEEEEEE--SHHHHHHHHHHHHHTT---EEEEEEEE-SSSS-HHHHHHHHHHHHHHTTTCSTS-EEEEESS-SSSSHHH
T ss_pred CcEEEEECCCChhHHHHHHHHHhCCC---cEEEEEEEecCCcchHHHHHHHHHHHHHhcCCCccceeecchhhhhccccc
Confidence 57999999999999999999999998 999999999999999999999999999996 77899999999999864322
Q ss_pred CccccccccccCCCCCCCCCCCCCCCcccccCCCCCcHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCcchhhccCc
Q psy17834 84 HKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKE 163 (325)
Q Consensus 84 ~~~a~~~~~~hG~dglg~~~~~~p~~~~~~~~~~~~~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~~~~~i~~ 163 (325)
+..+||.+|||+..+ |........+.. +|+++|+++++++|++||||++|||||||+||+++|++++||++
T Consensus 78 ------~~~~~g~~gl~~~~~--~~~~~~~~~~~~-~a~~~i~~~~~~~~~~vtiva~GplTNlA~al~~~P~~~~~i~~ 148 (312)
T PF01156_consen 78 ------APEIHGEDGLGDASL--PEPEDEPYPSDE-DAVDFIIELLKAYPGEVTIVAIGPLTNLALALRRDPEIAKKIKR 148 (312)
T ss_dssp ------HHHHHTTTSSTSS-H--HSSSCHCHBHSS-BHHHHHHHHHHHSSSTEEEEECS-SHHHHHHHHHHGGHHGGEEE
T ss_pred ------hhhcccccCCCcccC--cccccccccccc-cHHHHHHHHHHhcCCcEEEEecCcchhHHHHHHhChHHHhhceE
Confidence 277899999998654 311111123454 89999999999999999999999999999999999999999999
Q ss_pred EEEecCcccCCCCCCccccccCCCCHHHHHHHHhcCCCCeEEecCCccccccCChHHHHHHhCC-CChHHHHHHHHHHHH
Q psy17834 164 LYIMGGNHKGVGNVTSAAEFNFLTDPEAAHIVLGGFHGPICILPWEACLGIDISYEWRYDTLGA-SDAPYISLLNRLERG 242 (325)
Q Consensus 164 iviMGG~~~~~GN~~~~aE~N~~~DPeAA~~Vl~s~g~~i~~vpld~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 242 (325)
||+|||++...||++|.+|||||+|||||++||++ ++|++++|||+|+++.++.+.. +++.+ .++++.+++.+.+..
T Consensus 149 iviMGG~~~~~Gn~~~~aE~N~~~DP~AA~~Vl~s-~~~i~~vpldvt~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~ 226 (312)
T PF01156_consen 149 IVIMGGAFDGPGNVTPVAEFNFYCDPEAAQIVLES-GIPITLVPLDVTHQVLLTPEFL-DRLRAQSGSPLARFLRDLLRF 226 (312)
T ss_dssp EEEE---SSS--SSSSSC-HHHHHSHHHHHHHHCS-SS-EEEE-HHHHTTSEEEHHHH-HHHHHTCTCHHHHHHHHHHHH
T ss_pred EEEECCccccCCCCCccCCcCcccCHHHHHHHhhc-CCCeEEEecCccccccCCHHHH-HHHHhcCcchHHHHHHHHHHH
Confidence 99999999989999999999999999999999997 9999999999999988987653 55543 567888888877653
Q ss_pred HhhhhhhcCCCCCCCCcHHHHHHH-hcCCceeeEEEeeEEEEeeCCcccceEEEecCC-CCCCCeEEEeccCHHHHHHHH
Q psy17834 243 ISDRAISMGFNKWVPADSALCTCF-LDEKAITVSYETTCSVELAGEITRGQACVDVVH-SKTPNVRMIDTVDSRLLKDML 320 (325)
Q Consensus 243 ~~~~~~~~~~~~~~~~D~la~a~~-~~P~~~~~~~~~~v~V~~~g~~~~G~tv~d~~~-~~~~~v~v~~~vd~~~f~~~l 320 (325)
|.+....+..++++||++|++++ ++|++|+++++.+++|+++|+++||+|++|+.. .+.+|++|++++|.++|+++|
T Consensus 227 -~~~~~~~~~~~~~~~D~la~~~~~~~P~~~~~~~~~~v~V~~~~~~~~G~t~~d~~~~~~~~~~~v~~~vd~~~f~~~~ 305 (312)
T PF01156_consen 227 -YFDFYRDGSDGFPLHDPLAAAYAELDPELFTEFERGPVDVETDGGLTRGQTVVDREGSSGGPNVRVATDVDVDAFFDLL 305 (312)
T ss_dssp -HHHHHHHHSSSEE-HHHHHHHHH-H-GGGEEEEEEEEEEEESSSSTTTTEEEEETTSTTSSECEEEEEEE-HHHHHHHH
T ss_pred -HHhhhhhccCCcccCCHHHHHHHHhCCccceecceEEEEEEECCCCCCceEEEeccccCCCCcEEEeeecCHHHHHHHH
Confidence 32211112467889999999999 999998889999999999998999999999643 345999999999999999999
Q ss_pred hhhh
Q psy17834 321 LWIK 324 (325)
Q Consensus 321 ~~~~ 324 (325)
++++
T Consensus 306 ~~~l 309 (312)
T PF01156_consen 306 LERL 309 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 13
>cd00455 nuc_hydro nuc_hydro: Nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium, the purine-specific inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax and, pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases such as URH1 from Saccharomyces cerevisiae, RihA and RihB from Escherichia coli. Nucleoside hydrolases are of interest as a target for antiprotozoan drugs as, no nucleoside hydrolase activity or genes encoding these enzymes have been detected in humans and, parasitic protozoans lack de novo purine synthesis relying on nucleosid
Probab=100.00 E-value=4.8e-69 Score=501.44 Aligned_cols=293 Identities=29% Similarity=0.417 Sum_probs=250.4
Q ss_pred EEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCccCccc
Q psy17834 8 VILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVYKGVSKPLIPKDLSHKYS 87 (325)
Q Consensus 8 vIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~~G~~~pl~~~~~~~~~a 87 (325)
||||||+|+||++||+||+++|+ ++|+|||+++||++++++++|++++|+.+|+.+||||+|+..|+.++....
T Consensus 1 vIiDtD~g~DDa~Al~~~l~~~~---~~l~gIt~~~Gn~~~~~~~~n~~~~l~~~g~~~iPV~~G~~~pl~~~~~~~--- 74 (295)
T cd00455 1 VILDTDPGIDDAFALMYALLHPE---IELVGIVATYGNVTLEQATQNAAYLLELLGRLDIPVYAGATRPLTGEIPAA--- 74 (295)
T ss_pred CEEeCCCCHHHHHHHHHHhcCCC---ceEEEEEeccCCccHHHHHHHHHHHHHHhCCCCCCEeCCCCCCCCCCCCCC---
Confidence 69999999999999999999998 999999999999999999999999999999999999999999998764432
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCcHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCcchhhccCcEEEe
Q psy17834 88 FDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIM 167 (325)
Q Consensus 88 ~~~~~~hG~dglg~~~~~~p~~~~~~~~~~~~~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~~~~~i~~iviM 167 (325)
...+||.+|.+. .. + +. ...+.+ +|+++|+|+++++|++|||+++|||||||+|++++|+++++||+||+|
T Consensus 75 --~~~~~g~~g~~~-~~--~--~~-~~~~~~-~a~~~i~~~~~~~~~~v~ila~GplTNlA~al~~~p~~~~~i~~iviM 145 (295)
T cd00455 75 --YPEIHGEGGLGL-PI--P--PI-IEADDP-EAVQLLIDLIRKYPDEITIVALGPLTNLAMAFILDPDIKDRVKEIVIM 145 (295)
T ss_pred --CcccCCCCCCCC-CC--C--CC-CcCCCc-CHHHHHHHHHHhcCCCeEEEECCchHHHHHHHHHChHHHHhCCEEEEc
Confidence 145688888432 11 1 22 124454 899999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCCCccccccCCCCHHHHHHHHhcCCCCeEEecCCccccccCChHHHHHHhCCCChHHHHHHHHHHHHHhhhh
Q psy17834 168 GGNHKGVGNVTSAAEFNFLTDPEAAHIVLGGFHGPICILPWEACLGIDISYEWRYDTLGASDAPYISLLNRLERGISDRA 247 (325)
Q Consensus 168 GG~~~~~GN~~~~aE~N~~~DPeAA~~Vl~s~g~~i~~vpld~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (325)
||++..+||++|.+|||||+|||||++||++ +.+++|+|||+|++..++.++ ++++.+.+++..+++.+.+.. |...
T Consensus 146 GG~~~~~Gn~~~~aEfN~~~DP~AA~~Vl~s-~~~i~~vpldvt~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~-~~~~ 222 (295)
T cd00455 146 GGAFLVPGNVTPVAEANFYGDPEAANIVFNS-AKNLTIVPLDVTNQAVLTPPM-VERIFEQGTSIGLLIKPMIDY-YYKA 222 (295)
T ss_pred CCccCCCCCCCccchhhcccCHHHHHHHHhC-CCCeEEecccceeeEeCCHHH-HHHHHHhCCcHHHHHHHHHHH-HHHH
Confidence 9999778999999999999999999999997 999999999999988888775 356655556777777665442 2211
Q ss_pred -hhcCCCCCCCCcHHHHHHHhcCCceeeEEEeeEEEEeeCCcccceEEEecCCC-CCCCeEEEeccCHHHHHHHH
Q psy17834 248 -ISMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVDVVHS-KTPNVRMIDTVDSRLLKDML 320 (325)
Q Consensus 248 -~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~~v~V~~~g~~~~G~tv~d~~~~-~~~~v~v~~~vd~~~f~~~l 320 (325)
..++..++++||++|++++++|++++ .++.+++|+++| ++||+|++|+.+. .++|++|+.++|.++|++++
T Consensus 223 ~~~~~~~~~~~~D~lAv~~~~~P~~~~-~~~~~v~V~~~g-~~~G~t~~d~~~~~~~~~~~v~~~~d~~~f~~~~ 295 (295)
T cd00455 223 YQKPGIEGSPIHDPLAVAYLLNPSMFD-YSKVPVDVDTDG-LTRGQTIADFRENPGNGVTRVAVNLDYPDFIELI 295 (295)
T ss_pred HhcCCCCcCCCChHHHHHHhcCcccEE-EEEEeEEEEeCC-CCCceEEEecccCCCCCCcEEEEecCHHHHHhhC
Confidence 11455678999999999999999986 677999999999 8999999997642 34799999999999999874
No 14
>cd02647 nuc_hydro_TvIAG nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. Nucleoside hydrolases vary in their substrate specificity. This group contains eukaryotic and bacterial proteins similar to the purine specific inosine-adenosine-guanosine-preferring nucleoside hydrolase (IAG-NH) from T. vivax. T. vivax IAG-NH is of the order of a thousand to ten thousand fold more specific towards the naturally occurring purine nucleosides, than towards the pyrimidine nucleosides.
Probab=100.00 E-value=4.5e-69 Score=503.25 Aligned_cols=294 Identities=24% Similarity=0.292 Sum_probs=247.4
Q ss_pred ceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEee--cCCCCHHHHHHHHHHHHHHhCC-CCCCcccCCCCCCCCCCc
Q psy17834 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCC--HGNAELSEVVDNVCRVLQAFGR-KNIPVYKGVSKPLIPKDL 82 (325)
Q Consensus 6 ~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v--~Gn~~~~~~~~n~~~~l~~~g~-~~IPV~~G~~~pl~~~~~ 82 (325)
+|||||||+|+||++||+|||++|+ +||+|||++ +||++.+++++|++++|+.+|+ .+||||+|+.+||.....
T Consensus 1 ~~vIiDtD~g~DDa~Al~~al~~p~---i~l~gIt~v~~~GN~~~~~~~~na~~ll~~~g~~~dIPV~~Ga~~pL~~~~~ 77 (312)
T cd02647 1 KNVIFDHDGNVDDLVALLLLLKNEK---VDLKGIGVSGIDADCYVEPAVSVTRKLIDRLGQRDAIPVGKGGSRAVNPFPR 77 (312)
T ss_pred CCEEEeCCCCchHHHHHHHHhhCCC---cceEEEEEecCcCCccHHHHHHHHHHHHHHhCCCCCCCEEeCCCcCcccCcc
Confidence 6899999999999999999999998 999999999 9999999999999999999999 899999999999943211
Q ss_pred cCccccccccccCCCCCCCCCCCC--CCCcccccCCCCCcHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCcchhhc
Q psy17834 83 SHKYSFDWLHFFGKNGFGDIDLGD--SDTLDRSCHVENISAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQN 160 (325)
Q Consensus 83 ~~~~a~~~~~~hG~dglg~~~~~~--p~~~~~~~~~~~~~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~~~~~ 160 (325)
. ...|+.+|+++..... | .+.. +.+.. +|+++|+|+++++|++||||++|||||||+|++++|++.++
T Consensus 78 ~-------~~~~~~~g~~~~~~~~~~~-~~~~-~~~~~-~a~~~i~~~~~~~~~~vtiva~GPLTNlA~al~~~P~~~~~ 147 (312)
T cd02647 78 S-------WRRDAAFSVDHLPILNERY-TVET-PLAEE-TAQLVLIEKIKASLEPVTLLVTGPLTNLARALDSDPDISSN 147 (312)
T ss_pred c-------cccccccCcCcCCCCcccc-CCCC-CcCcc-hHHHHHHHHHHhCCCCEEEEEcccHHHHHHHHHHChHHHhh
Confidence 1 3346656665432100 1 1111 23444 89999999999999999999999999999999999999999
Q ss_pred cCcEEEecCcccCCCCC-----CccccccCCCCHHHHHHHHhcCCCCeEEecCCccccccCChHHH---HHHhCCCChHH
Q psy17834 161 AKELYIMGGNHKGVGNV-----TSAAEFNFLTDPEAAHIVLGGFHGPICILPWEACLGIDISYEWR---YDTLGASDAPY 232 (325)
Q Consensus 161 i~~iviMGG~~~~~GN~-----~~~aE~N~~~DPeAA~~Vl~s~g~~i~~vpld~t~~~~~~~~~~---~~~~~~~~~~~ 232 (325)
|++||||||++..+||+ +|.||||||+|||||++||++ +.|++|+|||+|++..++.+++ .+.+.+.+++.
T Consensus 148 i~~iviMGG~~~~~GN~~~~~~tp~aEfNi~~DPeAA~iV~~s-~~~i~~vpldvt~~~~~~~~~~~~~~~~~~~~~~~~ 226 (312)
T cd02647 148 IEEVYIMGGGVDAPGNVFTPPSNGTAEFNIFWDPLAAKTVFDS-GLKITLVPLDATNTVPLTREFLETDRQRFAAQRLPA 226 (312)
T ss_pred cCEEEEeCCccCCCCccccCCCCCCcccccccCHHHHHHHHhC-CCCEEEEccccccccccCHHHHHHHHHHHHhcCCHH
Confidence 99999999999889999 899999999999999999997 9999999999999999998753 34455556788
Q ss_pred HHHHHHHHHHHhhhhhhcCCCCCCCCcHHHHHHHhcCCceeeEEEee-EEEEeeCCcccceEEEecCCCCCCCeEEEecc
Q psy17834 233 ISLLNRLERGISDRAISMGFNKWVPADSALCTCFLDEKAITVSYETT-CSVELAGEITRGQACVDVVHSKTPNVRMIDTV 311 (325)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~~-v~V~~~g~~~~G~tv~d~~~~~~~~v~v~~~v 311 (325)
++++.++++. |.+ .++..++++||++|++++++|++++ .++.+ ++||++|. +||||++|+.+ +|++|++++
T Consensus 227 ~~~~~~~~~~-~~~--~~~~~g~~~hD~lava~~~~p~~~~-~~~~~~v~Ve~~g~-t~G~Tv~d~~~---~n~~v~~~v 298 (312)
T cd02647 227 SDLAGQGYAL-VKP--LEFNSTYYMWDVLTTLVLGAKEVDN-TKESLILEVDTDGL-SAGQTVTSPNG---RPLTLVTSN 298 (312)
T ss_pred HHHHHHHHHH-Hhh--hcCCCCccccHHHHHHHHcCchhcc-cccccceEEEECCC-CCceEEEcCCC---CCeEEEEee
Confidence 8888877664 432 2356788999999999999999986 67788 99999995 99999999653 799999999
Q ss_pred CHHHHHHHHh
Q psy17834 312 DSRLLKDMLL 321 (325)
Q Consensus 312 d~~~f~~~l~ 321 (325)
|.+...+.|.
T Consensus 299 d~~~~~~~~~ 308 (312)
T cd02647 299 NSYGSNRFFD 308 (312)
T ss_pred Ccccchhhhh
Confidence 9987544443
No 15
>cd02648 nuc_hydro_1 NH_1: A subgroup of nucleoside hydrolases. This group contains fungal proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=1.8e-67 Score=494.19 Aligned_cols=285 Identities=25% Similarity=0.359 Sum_probs=234.0
Q ss_pred CceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCC------------------C
Q psy17834 5 PRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRK------------------N 66 (325)
Q Consensus 5 ~~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~------------------~ 66 (325)
++|||||||+|+||++||+|||++|+ +++|+|||+|+||++++++++|++++|+++|+. +
T Consensus 1 p~kiIiDtDpG~DDa~AillAl~~p~--~~ev~gITtv~GN~~~~~~~~Nal~~l~~~gr~~~~~~~~~~~~~~~~~~~~ 78 (367)
T cd02648 1 PHPIIIDTDPGVDDVLAILLALSSPE--EVDVALISLTFGNTTLDHALRNVLRLFHVLERERAWRATPGVRYRAFSADAE 78 (367)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCC--CcEEEEEEecCCCcCHHHHHHHHHHHHHHhCCcccccccccccccccccCCC
Confidence 57999999999999999999999985 499999999999999999999999999999987 6
Q ss_pred CC-cccCCCCCCCCCCccCccccccccccCCCCCCCCCCCCCCC-ccc---------ccCCCCCcHHHHHHHHHHhCCC-
Q psy17834 67 IP-VYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDT-LDR---------SCHVENISAVVALHELTREFKG- 134 (325)
Q Consensus 67 IP-V~~G~~~pl~~~~~~~~~a~~~~~~hG~dglg~~~~~~p~~-~~~---------~~~~~~~~a~~~l~~~~~~~~~- 134 (325)
|| ||+|+.+||.++... + ..+||.||||+..+.+|.. |.. ...+.+ +|+++|+++++++|+
T Consensus 79 iP~V~~Ga~~PL~~~~~~---a---~~~HG~dGlgg~~~~~p~~~p~~~~~~~~~~~~~~~~~-~A~~~i~~~~~~~p~~ 151 (367)
T cd02648 79 KPIVASGSDQPLEGERLT---A---SYFHGRDGLSGVHWLHPDFTPVETWIPEIVAPLTPSDK-PAYDVILDILREEPDH 151 (367)
T ss_pred CCEEEcCCCcccCCCCcc---c---CccCCCCCCCCccccCCccccccccccccccccCcCCc-cHHHHHHHHHHhCCCC
Confidence 99 999999999876433 2 6789999999975321211 111 123444 899999999999995
Q ss_pred cEEEEEccchHHHHHHHHHCcchhhccCcEEEecCcccCCCCCCccccccCCCCHHHHHHHHhc-------C--CCCeEE
Q psy17834 135 LISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFNFLTDPEAAHIVLGG-------F--HGPICI 205 (325)
Q Consensus 135 ~vtiv~iGpLTNiA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~aE~N~~~DPeAA~~Vl~s-------~--g~~i~~ 205 (325)
+|+||++|||||||+|++++|++.++||+||+|||++...||++|.+|||||+|||||++||++ + ++|++|
T Consensus 152 ~itivalGPLTNiA~al~~~P~~~~~Ik~IviMGG~~~~~GN~tp~aEfNi~~DPeAA~iV~~~~~~~~~~s~~~~~i~m 231 (367)
T cd02648 152 TVTIAALGPLTNLAAAARKDPETFAKVGEVVVMGGAIDVPGNTSPVAEFNCFADPYAAAVVIDEPPSTAPEARRKLPLQV 231 (367)
T ss_pred cEEEEEcccHHHHHHHHHHChHHHhhhcEEEEeCCcccCCCCCCccchhhcccCHHHHHHHHhccccccccccCCCCeEE
Confidence 7999999999999999999999999999999999999878999999999999999999999984 1 458999
Q ss_pred ecCCccccccCChHHH----HHHhCC--CChHHHHHHHHHHH----HHhhhh--hhcCCCCC---CCCcHHHHHHHhcCC
Q psy17834 206 LPWEACLGIDISYEWR----YDTLGA--SDAPYISLLNRLER----GISDRA--ISMGFNKW---VPADSALCTCFLDEK 270 (325)
Q Consensus 206 vpld~t~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~---~~~D~la~a~~~~P~ 270 (325)
+|||+|+++.++.++. ++.+.. .++++++++.+... .+|.+. +.++.+++ .+||++|++++++|+
T Consensus 232 vpLDvT~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~lHD~lava~~i~p~ 311 (367)
T cd02648 232 FPLDITTGHTLPYSSLFATYVTPRDAPERGSPLARWLEHVFISTFLTHPRAFTPEEFLPDRSELFEMHDPLAVWYAIFAD 311 (367)
T ss_pred EeecCCCCeeeCHHHhhhhHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCcHHHhHhhcCcc
Confidence 9999999999997652 233333 45666765433221 112211 12333444 899999999999999
Q ss_pred ----------ceeeEEEeeEEEEeeCCcccceEEEecCC
Q psy17834 271 ----------AITVSYETTCSVELAGEITRGQACVDVVH 299 (325)
Q Consensus 271 ----------~~~~~~~~~v~V~~~g~~~~G~tv~d~~~ 299 (325)
+|+ +++.+|+||++|++||||||+|++.
T Consensus 312 ~~~~~~~~~~~~~-~~~~~v~Ve~~g~~trG~tV~D~~~ 349 (367)
T cd02648 312 MPATGSIDGNGWK-HTPRDFRVETSGQWTRGMCVVDRRG 349 (367)
T ss_pred cccccccccceEE-EEEecEEEEeCCCCCCceEEEecCC
Confidence 675 7889999999999999999999754
No 16
>KOG2938|consensus
Probab=100.00 E-value=2.3e-55 Score=409.59 Aligned_cols=307 Identities=33% Similarity=0.420 Sum_probs=249.0
Q ss_pred CCCCceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCC
Q psy17834 2 SIYPRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVYKGVSKPLIPKD 81 (325)
Q Consensus 2 ~~~~~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~~G~~~pl~~~~ 81 (325)
...+.++|||||+|.||++||++++.+|+ ++++|+|+|+||+.++++.+||+++|+.+||.+||||+|+.+||.+..
T Consensus 18 ~~~~~~iiid~D~~~Dd~~al~la~~~~~---~~ilglTtv~Gn~~~~~t~~NA~~~L~l~~r~dIPV~~Ga~kpl~~~~ 94 (350)
T KOG2938|consen 18 ASYKRKIIIDCDPGSDDAFALLLALLGPE---LEILGLTTVHGNVTVEDTDRNALDLLSLLGRLDIPVYEGAAKPLIRSP 94 (350)
T ss_pred cccceeEEEeCCCCcccHHHHHHHhcCcc---ceeEeeeEeeCCccHhhhhhhHHHHHHhcCCcCCCchhcccccccCCc
Confidence 45678999999999999999999999998 999999999999999999999999999999999999999999999876
Q ss_pred ccCccccccccccCCCCCCCCCCCCCCCcccccCCCCCcHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCcchhhcc
Q psy17834 82 LSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNA 161 (325)
Q Consensus 82 ~~~~~a~~~~~~hG~dglg~~~~~~p~~~~~~~~~~~~~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~~~~~i 161 (325)
... +.++||.||+|+..+ |. +. ...+.+ +++++++++..++|++||+|++|||||||++++.+|++.+++
T Consensus 95 ~~~-----a~~~hG~dGl~d~~~--~~-~~-~~~~~~-~~~~~~i~~~~~~p~~It~va~GPLTNlAla~~~~pd~~~~v 164 (350)
T KOG2938|consen 95 NDW-----ANAFHGIDGLGDILL--PP-PR-DDINVG-HGAEFAIEQDIAYPGEITIVAYGPLTNLALALALDPDFLKNV 164 (350)
T ss_pred cch-----hhhhccccccCCccc--CC-cc-cccccc-ccHHHHHHHhhcCCCCceEEEeccchHHHHHhhcChhHhhcc
Confidence 642 288999999999665 42 32 235555 999999999999999999999999999999999999999999
Q ss_pred CcEEEecCcccCCCCCCccccccCCCCHHHHHHHHhcCCCCeEEecCCccccccCChH--HHHHHhCCCChHHHHHHHHH
Q psy17834 162 KELYIMGGNHKGVGNVTSAAEFNFLTDPEAAHIVLGGFHGPICILPWEACLGIDISYE--WRYDTLGASDAPYISLLNRL 239 (325)
Q Consensus 162 ~~iviMGG~~~~~GN~~~~aE~N~~~DPeAA~~Vl~s~g~~i~~vpld~t~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 239 (325)
|+++||||++.+.||+++.|||||+.|||||++||++.-.+++++||++|.+..++.. +++...+...++...++...
T Consensus 165 ~~ivimGG~~~~~gnv~~~AefN~~~DPeAA~~vl~~~k~~~~v~pi~i~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 244 (350)
T KOG2938|consen 165 KRIVIMGGNYYGNGNVTHGAEFNFYRDPEAAHTVLTRTKDPITVGPINITHQGSLTNLALIRLSNRKNKHPILESYLSLG 244 (350)
T ss_pred ccEEEeccccccccCcCccccccccCChHHHHHHHhcCCCceeEeeeeeeeccccchhhhhhhhhhccCCchhHHhhhhh
Confidence 9999999999989999999999999999999999998446889999999988888763 33332233344554454443
Q ss_pred HHHHhhhh-hhcCCCCCCCCcHHHHHHHhcCCceeeEE-EeeEEEEeeCCcccceEEEecCC---CCCCCeEEEeccCHH
Q psy17834 240 ERGISDRA-ISMGFNKWVPADSALCTCFLDEKAITVSY-ETTCSVELAGEITRGQACVDVVH---SKTPNVRMIDTVDSR 314 (325)
Q Consensus 240 ~~~~~~~~-~~~~~~~~~~~D~la~a~~~~P~~~~~~~-~~~v~V~~~g~~~~G~tv~d~~~---~~~~~v~v~~~vd~~ 314 (325)
+.. +... +..|..+++.||..+++.++.|+.+.... -..+.+.+ +.+++|++++++.. ..+.+++....++.+
T Consensus 245 ~~~-~~~~~~~~G~~~~~~~d~~~~a~~i~~d~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~ 322 (350)
T KOG2938|consen 245 TAR-QQVYNGAYGNIFTPYPDNIYVAFAIFPDPLAAKTVYVSVDVLL-DSPTRGQMVVDHLPAKLDYPANVTKITTVDVV 322 (350)
T ss_pred HHh-hhcccccCCccCCCCCcHHHHHHHhhhhhhhhhhhhheeeeee-cCcceeeeEEecchhhhcccccceeecccccc
Confidence 332 2111 12456667789999999999998654222 22344444 44799999988543 335899999999999
Q ss_pred HHHHHHhhh
Q psy17834 315 LLKDMLLWI 323 (325)
Q Consensus 315 ~f~~~l~~~ 323 (325)
+|+..+...
T Consensus 323 ~f~~~~~~~ 331 (350)
T KOG2938|consen 323 KFLTLRIQV 331 (350)
T ss_pred hheehhhhh
Confidence 999887664
No 17
>cd02652 nuc_hydro_2 NH_2: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=2.2e-46 Score=345.58 Aligned_cols=243 Identities=25% Similarity=0.302 Sum_probs=180.9
Q ss_pred EEEeCCCC--chHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCccCc
Q psy17834 8 VILDVDAG--IDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVYKGVSKPLIPKDLSHK 85 (325)
Q Consensus 8 vIiDtD~G--~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~~G~~~pl~~~~~~~~ 85 (325)
||||||+| +||++||+||+.+|+ ++|+|||+++||++.+ .|+..++.++|+.+|||+. .+|+.......
T Consensus 1 vIlDTD~G~DiDDa~Al~lal~~p~---~~llgIT~~~GN~~~~---~~~~~~n~~~gr~dIPVg~--~~~~~~~~~~~- 71 (293)
T cd02652 1 LILDTDIGGDPDDALALALAHALQK---CDLLAVTITLADASAR---RAIDAVNRFYGRGDIPIGA--DYHGWPEDAKD- 71 (293)
T ss_pred CEEeCCCCCChHHHHHHHHHhhCCC---CceEEEEecCCcccHh---HHHHHHHHhcCCCCCcEee--CCCCCCCcccc-
Confidence 69999999 699999999999998 9999999999999887 5667778889999999954 56665433211
Q ss_pred cccccccccCCCCCCCCCCCCCCCcccccCCCCCcHHHHHHHHHHhC-CCcEEEEEccchHHHHHHHHH------Ccch-
Q psy17834 86 YSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVALHELTREF-KGLISVLCLAPLTNIALTLRL------FPQF- 157 (325)
Q Consensus 86 ~a~~~~~~hG~dglg~~~~~~p~~~~~~~~~~~~~a~~~l~~~~~~~-~~~vtiv~iGpLTNiA~al~~------~P~~- 157 (325)
++ ...||.++++. + .+ ...... +|+++|+++++++ |++||||++|||||||++|++ +|++
T Consensus 72 ~~---~~~~~~~~~~~-----~-~~--~~~~~~-~A~~~i~~~l~~~~~~~vtivaiGplTNlA~ll~~~~d~l~~pel~ 139 (293)
T cd02652 72 HA---KFLLEGDRLHH-----D-LE--SAEDAL-DAVKALRRLLASAEDASVTIVSIGPLTNLAALLDADADPLTGPELV 139 (293)
T ss_pred cc---ceeCCCCCCCC-----c-cc--ccccCc-cHHHHHHHHHHhcCCCCEEEEEcccHHHHHHHHHhccccccCcHHH
Confidence 11 23344443331 1 11 112344 8999999999998 789999999999999999999 9999
Q ss_pred hhccCcEEEecCcc-cCCCCCCccccccCCCCHHHHHHHHhcC---CCCeEE--ecCCccccccCChHHHHHHhCCCChH
Q psy17834 158 AQNAKELYIMGGNH-KGVGNVTSAAEFNFLTDPEAAHIVLGGF---HGPICI--LPWEACLGIDISYEWRYDTLGASDAP 231 (325)
Q Consensus 158 ~~~i~~iviMGG~~-~~~GN~~~~aE~N~~~DPeAA~~Vl~s~---g~~i~~--vpld~t~~~~~~~~~~~~~~~~~~~~ 231 (325)
++|||+||||||++ ...||++ .+||||++||+||++||+++ |.|++| +++|++++...+... .......+|
T Consensus 140 ~~kvk~lviMGG~~~~~~Gn~~-~aE~N~~~Dp~AA~~V~~~~~~~g~p~~~V~~~~ev~~~~~~~~~~--~~~~~~~~p 216 (293)
T cd02652 140 RQKVKRLVVMGGAFYDPDGNVQ-HREYNFVTDPKAAQRVAGRAQHLGIPVRIVWSGYELGEAVSYPHVL--VIAHPFNTP 216 (293)
T ss_pred HhhCCEEEEeCCCccCCCCCcc-hhhhhcccCHHHHHHHHhcccccCCCEEEEecCHHHhccccCchhh--hhcccccch
Confidence 58999999999997 3569988 99999999999999999974 588888 699999766555421 111222334
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCCCCCCcHHHHHHHhcCC--ceeeEEE----eeEEEEeeC
Q psy17834 232 YISLLNRLERGISDRAISMGFNKWVPADSALCTCFLDEK--AITVSYE----TTCSVELAG 286 (325)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~la~a~~~~P~--~~~~~~~----~~v~V~~~g 286 (325)
+.+.+. . |. ...+.||++|++|+++|+ +|.-++. .+|+|..+|
T Consensus 217 ~~~~y~----~-~~-------~~~~~wD~~t~l~av~~~~~~F~~~~~~~g~g~v~~~~~G 265 (293)
T cd02652 217 VFAAYW----P-RS-------HRRPLWDPLTLLAAVRGGGMLFDLREVQLGPGRVEVDSSG 265 (293)
T ss_pred HHHHHH----h-cc-------CCccchHHHHHHHeeCCcCCccccccccCCCceEEEcCCC
Confidence 433321 1 21 126789999999999997 7754333 455554334
No 18
>PF07632 DUF1593: Protein of unknown function (DUF1593); InterPro: IPR011483 This is a family of proteins found in Rhodopirellula baltica that are predicted to be secreted. Also, a member has been identified in Caulobacter crescentus (Caulobacter vibrioides) (Q9AAT9 from SWISSPROT). These proteins may be related to IPR001910 from INTERPRO.; PDB: 2YHG_A.
Probab=97.70 E-value=8.1e-05 Score=67.53 Aligned_cols=140 Identities=17% Similarity=0.194 Sum_probs=80.1
Q ss_pred eEEEeCCCC--chHHHHHHHHHhCCCCCceEEEEEEeecCCC-CHHHHHHHHHHHHHHhCC------CCCCcccCCCCCC
Q psy17834 7 KVILDVDAG--IDDAWALLLMLKAEQKNLIEIIAITCCHGNA-ELSEVVDNVCRVLQAFGR------KNIPVYKGVSKPL 77 (325)
Q Consensus 7 kvIiDtD~G--~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~-~~~~~~~n~~~~l~~~g~------~~IPV~~G~~~pl 77 (325)
||||=||.| .||...|+-+|...+ .+|+.||+.+.+-- .-....+...++++.+++ .+-|=|+-+
T Consensus 1 RviV~TDi~~EpDD~~SlvR~LlYsN--e~dieGivattS~~~~~~~~~~~i~~iIdaY~kv~pNL~~H~~~yPs~---- 74 (260)
T PF07632_consen 1 RVIVLTDIGNEPDDAQSLVRLLLYSN--EFDIEGIVATTSTWHWSGVHPEWIHRIIDAYEKVYPNLNKHAPGYPSP---- 74 (260)
T ss_dssp EEEEEE-TTS-THHHHHHHHHHHTGG--GSEEEEEEE--BTTB------HHHHHHHHHHHHHHHHHTTTSTT---H----
T ss_pred CEEEeCCCCCCCchHHHHHHHHHhcc--ccceeEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCH----
Confidence 689999995 899999998777654 59999999888511 111233455566666653 112212110
Q ss_pred CCCCccCccccccccccCCCCCCCCCCCCCCCcccccCCCCCcHHHHHHHHHHhC-CCcEEEEEccchHHHHHHHHH---
Q psy17834 78 IPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVALHELTREF-KGLISVLCLAPLTNIALTLRL--- 153 (325)
Q Consensus 78 ~~~~~~~~~a~~~~~~hG~dglg~~~~~~p~~~~~~~~~~~~~a~~~l~~~~~~~-~~~vtiv~iGpLTNiA~al~~--- 153 (325)
... .+--..|.-..|-... -. -.+. ++.++|++.+.+. +.+|.|.+-|-...||.||..
T Consensus 75 ---e~L-----~s~vk~G~~~yg~~~~-----G~---~~~s-~GS~lIi~~~~~~d~rPLwi~~WGG~ntlAqAL~~i~~ 137 (260)
T PF07632_consen 75 ---EYL-----RSIVKQGNPVYGMPAV-----GE---GKDS-EGSELIIEALDKDDPRPLWILVWGGTNTLAQALWDIKE 137 (260)
T ss_dssp ---HHH-----HHTEEE--SS-GGGG------ST---T----HHHHHHHHHHHSS-SS-EEEEESS-SHHHHHHHHHHHH
T ss_pred ---HHH-----HHHHccCCcccCcccC-----CC---CCCC-hHHHHHHHHHcCCCCCCEEEEecCCHHHHHHHHHHHHH
Confidence 000 0011122222111000 00 1123 8999999999876 689999999999999999999
Q ss_pred ------CcchhhccCcEEEecCc
Q psy17834 154 ------FPQFAQNAKELYIMGGN 170 (325)
Q Consensus 154 ------~P~~~~~i~~iviMGG~ 170 (325)
.++|.+|++ |+..++-
T Consensus 138 ~~~~~~~~~~~~Klr-vy~I~dQ 159 (260)
T PF07632_consen 138 TRSPEEAARFVSKLR-VYSISDQ 159 (260)
T ss_dssp HS-HHHHHHHHHTEE-EEEES--
T ss_pred hcCHHHHHHHHhhEE-EEeccCC
Confidence 788999995 7777663
No 19
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=75.88 E-value=6.3 Score=29.50 Aligned_cols=54 Identities=24% Similarity=0.410 Sum_probs=29.6
Q ss_pred eEEEeCCCCchH-HHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcc
Q psy17834 7 KVILDVDAGIDD-AWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVY 70 (325)
Q Consensus 7 kvIiDtD~G~DD-a~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~ 70 (325)
.+|||+-+|..| .++++-.+.. -..+-||| +- +-+...++|..+++.+..+||-
T Consensus 3 ~LiiD~PPGTgD~~l~~~~~~~~-----~g~ivVTT-Pq----~la~~dv~r~~~~~~~~~vpil 57 (81)
T PF10609_consen 3 YLIIDLPPGTGDEHLTLMQYLPI-----DGAIVVTT-PQ----ELALADVRRAIDMFRKLNVPIL 57 (81)
T ss_dssp EEEEE--SCSSSHHHHHHHHH-------SEEEEEE--CC----C--HHHHHHHHHHHHCTT-EEE
T ss_pred EEEEeCCCCCCcHHHHHHHhCCC-----CeEEEEeC-CH----HHHHHHHHHHHHHHHhcCCCcE
Confidence 589999999755 5555544442 22444443 22 2345567788888888889985
No 20
>KOG2938|consensus
Probab=74.38 E-value=1.2 Score=42.49 Aligned_cols=78 Identities=26% Similarity=0.239 Sum_probs=62.5
Q ss_pred cHHHHHHHHHHhCC---CcEEEEEccchHHHHHHHHHCcchhhccCcEEEecCcccC------CCCCC------cccccc
Q psy17834 120 SAVVALHELTREFK---GLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKG------VGNVT------SAAEFN 184 (325)
Q Consensus 120 ~a~~~l~~~~~~~~---~~vtiv~iGpLTNiA~al~~~P~~~~~i~~iviMGG~~~~------~GN~~------~~aE~N 184 (325)
+|++-..+.. +.| .++.+...+++|+.+.....++.-...+.+.++++|.... .||.. ..++||
T Consensus 193 eAA~~vl~~~-k~~~~v~pi~i~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~d~~~~a~~ 271 (350)
T KOG2938|consen 193 EAAHTVLTRT-KDPITVGPINITHQGSLTNLALIRLSNRKNKHPILESYLSLGTARQQVYNGAYGNIFTPYPDNIYVAFA 271 (350)
T ss_pred HHHHHHHhcC-CCceeEeeeeeeeccccchhhhhhhhhhccCCchhHHhhhhhHHhhhcccccCCccCCCCCcHHHHHHH
Confidence 6777666654 333 4578889999999999999998888888899999998753 25543 468999
Q ss_pred CCCCHHHHHHHHhc
Q psy17834 185 FLTDPEAAHIVLGG 198 (325)
Q Consensus 185 ~~~DPeAA~~Vl~s 198 (325)
++.||-+++.++.+
T Consensus 272 i~~d~~~~~~~~~~ 285 (350)
T KOG2938|consen 272 IFPDPLAAKTVYVS 285 (350)
T ss_pred hhhhhhhhhhhhhe
Confidence 99999999998886
No 21
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=65.87 E-value=27 Score=33.59 Aligned_cols=62 Identities=24% Similarity=0.397 Sum_probs=49.0
Q ss_pred CCCceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecC------CCCHHHHHHHHHHHHHHhCCCCCCccc
Q psy17834 3 IYPRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHG------NAELSEVVDNVCRVLQAFGRKNIPVYK 71 (325)
Q Consensus 3 ~~~~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~G------n~~~~~~~~n~~~~l~~~g~~~IPV~~ 71 (325)
++++||++=.=.|+|-.+|..++.... .||+||+.-.+ .+..++-.+-|.++.+.+| ||.|.
T Consensus 1 ~~~~kV~v~mSGGVDSSVaA~lLk~QG----yeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LG---Ip~~~ 68 (356)
T COG0482 1 MKKKKVLVGMSGGVDSSVAAYLLKEQG----YEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLG---IPLYV 68 (356)
T ss_pred CCCcEEEEEccCCHHHHHHHHHHHHcC----CeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhC---CceEE
Confidence 457899999999999999887776653 99999997653 3566677888999999888 55553
No 22
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=63.76 E-value=7.6 Score=33.13 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=24.2
Q ss_pred HHHHHHHHhCCCCCceEEEEEEeecCCCCH
Q psy17834 19 AWALLLMLKAEQKNLIEIIAITCCHGNAEL 48 (325)
Q Consensus 19 a~Al~~al~~~~~~~i~l~gVt~v~Gn~~~ 48 (325)
-.||.+.+.+|+ ||++|+..|..|+.-
T Consensus 71 E~Al~~v~~h~~---IeVLG~iAVASnT~~ 97 (180)
T PF14097_consen 71 EQALEYVANHPD---IEVLGAIAVASNTHG 97 (180)
T ss_pred HHHHHHHHcCCC---ceEEEEEEEEecCCC
Confidence 468999999998 999999999988764
No 23
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=63.30 E-value=24 Score=33.97 Aligned_cols=59 Identities=27% Similarity=0.491 Sum_probs=40.7
Q ss_pred ceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCC--------HHHHHHHHHHHHHHhCCCCCCccc
Q psy17834 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAE--------LSEVVDNVCRVLQAFGRKNIPVYK 71 (325)
Q Consensus 6 ~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~--------~~~~~~n~~~~l~~~g~~~IPV~~ 71 (325)
+||++=.-.|+|-++|..++.... .||.||+.-..+.. .++....|+++.+.+| ||.+.
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk~~G----~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~Lg---Ip~~v 67 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLKEQG----YDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLG---IPHYV 67 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHHHCT-----EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT-----EEE
T ss_pred CeEEEEccCCHHHHHHHHHHHhhc----ccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcC---CCEEE
Confidence 478888999999999998888764 99999998886553 2355788888888886 77653
No 24
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=56.65 E-value=50 Score=29.93 Aligned_cols=72 Identities=14% Similarity=0.039 Sum_probs=51.0
Q ss_pred cHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCcchhhccCcEEEecCcccCCCCCCccccccCCCCHHHHHHHHhcC
Q psy17834 120 SAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFNFLTDPEAAHIVLGGF 199 (325)
Q Consensus 120 ~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~aE~N~~~DPeAA~~Vl~s~ 199 (325)
+-+..|.+.+... ++||++-+. ++|.+|...|.+ ++++.||.+.. +.+.+..|. ++ -++.+
T Consensus 103 sT~~~la~~L~~~--~ltVvTnsl--~ia~~l~~~~~~-----~v~l~GG~~~~--------~~~~~~G~~-~~-~l~~~ 163 (251)
T PRK13509 103 STAFLLGRELCGK--PVQIITNYL--PLANYLIDQEHD-----SVIIMGGQYNK--------SQSITLSPQ-GS-ENSLY 163 (251)
T ss_pred HHHHHHHHHhCCC--CeEEEeCCH--HHHHHHHhCCCC-----EEEEECCeEcC--------CcceeECHH-HH-HHHhC
Confidence 5566677777543 499988776 788888877764 58999999853 346778886 44 55666
Q ss_pred CCCeEEecCCc
Q psy17834 200 HGPICILPWEA 210 (325)
Q Consensus 200 g~~i~~vpld~ 210 (325)
..++.+++-+-
T Consensus 164 ~~d~aFig~~g 174 (251)
T PRK13509 164 AGHWMFTSGKG 174 (251)
T ss_pred cCCEEEECCCc
Confidence 77888876543
No 25
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=56.26 E-value=53 Score=27.57 Aligned_cols=75 Identities=17% Similarity=0.191 Sum_probs=55.0
Q ss_pred cHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCcchhhccCcEEEecCcccCCCCCCccccccCCCCHHHHHHHHhcC
Q psy17834 120 SAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFNFLTDPEAAHIVLGGF 199 (325)
Q Consensus 120 ~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~aE~N~~~DPeAA~~Vl~s~ 199 (325)
.-...|.+.+...+ ++||++-. .++|..|...|++ +|+++||.+.. +...+..|.|.+.+-+ .
T Consensus 29 tT~~~la~~L~~~~-~ltVvTns--l~ia~~l~~~~~~-----~vi~~GG~~~~--------~~~~~~G~~a~~~l~~-~ 91 (161)
T PF00455_consen 29 TTTLELAKYLPDKK-NLTVVTNS--LPIANELSENPNI-----EVILLGGEVNP--------KSLSFVGPIALEALRQ-F 91 (161)
T ss_pred hHHHHHHHHhhcCC-ceEEEECC--HHHHHHHHhcCce-----EEEEeCCEEEc--------CCCcEECchHHHHHHh-h
Confidence 56777888887764 69998765 3578888888844 69999999863 4466778888877766 5
Q ss_pred CCCeEEecCCcc
Q psy17834 200 HGPICILPWEAC 211 (325)
Q Consensus 200 g~~i~~vpld~t 211 (325)
...+.+++-+-.
T Consensus 92 ~~d~afi~~~gi 103 (161)
T PF00455_consen 92 RFDKAFIGADGI 103 (161)
T ss_pred ccceEEecccEe
Confidence 777877775533
No 26
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=53.30 E-value=63 Score=29.66 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=52.7
Q ss_pred cHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCcchhhccCcEEEecCcccCCCCCCccccccCCCCHHHHHHHHhcC
Q psy17834 120 SAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFNFLTDPEAAHIVLGGF 199 (325)
Q Consensus 120 ~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~aE~N~~~DPeAA~~Vl~s~ 199 (325)
.-...|.+.+... ..+||++-.. ++|..|...|.+ ++++.||.+.. +.+....|.|.+.+=+ +
T Consensus 116 tT~~~la~~L~~~-~~ltVvTnsl--~ia~~l~~~~~~-----~v~llGG~~~~--------~~~~~~G~~a~~~l~~-~ 178 (269)
T PRK09802 116 TTTFEIARLMRKH-TDVIAMTNGM--NVANALLEAEGV-----ELLMTGGHLRR--------QSQSFYGDQAEQSLQN-Y 178 (269)
T ss_pred hHHHHHHHhcCcC-CCeEEEeCCH--HHHHHHHhCCCC-----EEEEECCEEec--------CCCceECHHHHHHHHh-c
Confidence 5566677777543 2589988764 677777777764 59999999863 4467788988887765 5
Q ss_pred CCCeEEecCCc
Q psy17834 200 HGPICILPWEA 210 (325)
Q Consensus 200 g~~i~~vpld~ 210 (325)
...+.+++-+-
T Consensus 179 ~~d~afig~~g 189 (269)
T PRK09802 179 HFDMLFLGVDA 189 (269)
T ss_pred cCCEEEEcCce
Confidence 77787777543
No 27
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=45.34 E-value=5.1 Score=38.12 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=18.0
Q ss_pred HHHHHHhCC-CcEEEEEccchHHHHHH
Q psy17834 125 LHELTREFK-GLISVLCLAPLTNIALT 150 (325)
Q Consensus 125 l~~~~~~~~-~~vtiv~iGpLTNiA~a 150 (325)
+.+.+..-| +.+||||+||||.=+++
T Consensus 119 ireEvt~iP~dg~~vIATGPLTs~~La 145 (439)
T COG1206 119 IREEVTEIPPDGITVIATGPLTSDALA 145 (439)
T ss_pred EccccccCCCCCcEEEecCCCCCHHHH
Confidence 334444444 77999999999975544
No 28
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins containing this domain are found in both prokaryotes and eukaryotes [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strands. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel. This domain is also found in the PROSC (proline synthetase co-transcribed bacterial homolog) family of proteins, which are not known to have alanine racemase activity.; PDB: 3KW3_A 1B54_A 1CT5_A 2ODO_B 2RJG_A 3B8V_D 2RJH_D 3B8T_D 3B8W_B 3B8U_A ....
Probab=44.94 E-value=1.4e+02 Score=25.83 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=33.9
Q ss_pred CCceEEEeCCCC-------chHHHHHHHHHh-CCCCCceEEEEEEeecCCCC
Q psy17834 4 YPRKVILDVDAG-------IDDAWALLLMLK-AEQKNLIEIIAITCCHGNAE 47 (325)
Q Consensus 4 ~~~kvIiDtD~G-------~DDa~Al~~al~-~~~~~~i~l~gVt~v~Gn~~ 47 (325)
.+.+|.|..|+| .||+..++-.+. +|. +++.||.|-+|..+
T Consensus 109 ~~~~v~l~vdtG~~R~G~~~~~~~~l~~~i~~~~~---l~l~Gl~th~~~~d 157 (218)
T PF01168_consen 109 KPLKVHLKVDTGMGRLGVRPEELEELAEAIKALPN---LRLEGLMTHFAHAD 157 (218)
T ss_dssp STEEEEEEBESSSSSSSBECHHHHHHHHHHHHTTT---EEEEEEEEBGSSTT
T ss_pred CceEEEEeecccccccCCCHHHHHHHHHHHhcCCC---ceEeeEeccccccC
Confidence 456899999997 588888888777 565 99999999998775
No 29
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=42.97 E-value=36 Score=27.77 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=32.6
Q ss_pred eEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcccCCCCCC
Q psy17834 34 IEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVYKGVSKPL 77 (325)
Q Consensus 34 i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~~G~~~pl 77 (325)
.+++|+|+..|.+. ...+.+...|+..|..++||..|..-+.
T Consensus 51 adiVglS~L~t~~~--~~~~~~~~~l~~~gl~~v~vivGG~~~i 92 (128)
T cd02072 51 ADAILVSSLYGHGE--IDCKGLREKCDEAGLKDILLYVGGNLVV 92 (128)
T ss_pred CCEEEEeccccCCH--HHHHHHHHHHHHCCCCCCeEEEECCCCC
Confidence 88999999888664 3456677788888876899999876544
No 30
>KOG3022|consensus
Probab=38.04 E-value=42 Score=31.18 Aligned_cols=57 Identities=16% Similarity=0.265 Sum_probs=35.7
Q ss_pred ceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcc
Q psy17834 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVY 70 (325)
Q Consensus 6 ~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~ 70 (325)
-.+||||-+|++|.+ |.+.-..+. -+ -+|.++ ++-+-+..-++|-.++|.+..|||.
T Consensus 158 DyLviDtPPGtsDeh-ls~~~~~~~---~~-gAviVT---TPQ~vAl~Dv~K~i~fc~K~~I~il 214 (300)
T KOG3022|consen 158 DYLVIDTPPGTSDEH-LSLVQFLRE---SD-GAVIVT---TPQEVALQDVRKEIDFCRKAGIPIL 214 (300)
T ss_pred CEEEEeCCCCCChhh-hheeecccc---cC-ceEEEe---CchhhhhHHHHhhhhhhhhcCCceE
Confidence 368999999998855 222111111 11 133332 3445567788888899998899985
No 31
>PRK02628 nadE NAD synthetase; Reviewed
Probab=37.34 E-value=95 Score=32.62 Aligned_cols=57 Identities=30% Similarity=0.472 Sum_probs=46.4
Q ss_pred CceEEEeCCCCchHHHHHHHHHhC------CCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCC
Q psy17834 5 PRKVILDVDAGIDDAWALLLMLKA------EQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRK 65 (325)
Q Consensus 5 ~~kvIiDtD~G~DDa~Al~~al~~------~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~ 65 (325)
..+++|---.|+|-+++++++... +. .+|+||+. +|..+.+.+.+.+..+.+.+|-.
T Consensus 361 ~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~---~~v~~v~m-p~~~ss~~s~~~a~~la~~LGi~ 423 (679)
T PRK02628 361 LKKVVIGISGGLDSTHALLVAAKAMDRLGLPR---KNILAYTM-PGFATTDRTKNNAVALMKALGVT 423 (679)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHHhhCCCc---ceEEEEEC-CCCCCCHHHHHHHHHHHHHhCCe
Confidence 468999999999999888887654 22 67899998 77655677889999999999964
No 32
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=37.20 E-value=99 Score=23.95 Aligned_cols=62 Identities=21% Similarity=0.303 Sum_probs=39.6
Q ss_pred EEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcccCCCCCCCC
Q psy17834 9 ILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVYKGVSKPLIP 79 (325)
Q Consensus 9 IiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~~G~~~pl~~ 79 (325)
+++.+...++.+.-+. ..+ .+++|+|+...+.. ...+++.++.+..+. +++|..|-..+...
T Consensus 32 ~l~~~~~~~~~~~~i~---~~~---pdiV~iS~~~~~~~--~~~~~~~~~~~~~p~-~~~ivvGG~~~t~~ 93 (125)
T cd02065 32 DLGVDVPPEEIVEAAK---EED---ADVVGLSALSTTHM--EAMKLVIEALKELGI-DIPVVVGGAHPTAD 93 (125)
T ss_pred EcCCCCCHHHHHHHHH---HcC---CCEEEEecchHhHH--HHHHHHHHHHHhcCC-CCeEEEeCCcCCcc
Confidence 4555544455443332 233 77999999887643 567777788777643 79998887655443
No 33
>PF09078 CheY-binding: CheY binding; InterPro: IPR015162 The CheY binding domain is found in the response regulator histidine kinase CheA. It adopts a secondary structure consisting of an open-face beta/alpha sandwich, with four antiparallel beta-strands and two alpha-helices. It binds to a corresponding domain on CheY, with subsequent phosphorylation of the CheY Asp57 residue, and activation of CheY, which then affects flagellar rotation []. ; PDB: 1FWP_A 1EAY_C 1A0O_D 1FFG_B 1FFS_B 1FFW_D.
Probab=34.37 E-value=34 Score=24.45 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=15.3
Q ss_pred ceEEEeCCCCchHHHHHHH
Q psy17834 6 RKVILDVDAGIDDAWALLL 24 (325)
Q Consensus 6 ~kvIiDtD~G~DDa~Al~~ 24 (325)
--+|++|+.+.||..|++-
T Consensus 36 l~~~L~T~~s~DDI~AV~C 54 (65)
T PF09078_consen 36 LEVWLETSVSADDIIAVCC 54 (65)
T ss_dssp EEEEE-STSSHHHHHHHHT
T ss_pred EEEEECCCCChhhEEEEEE
Confidence 3589999999999999763
No 34
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=33.65 E-value=1.6e+02 Score=26.21 Aligned_cols=75 Identities=13% Similarity=0.081 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhCC-CcEEEEEccchHHHHHHHHHCcchhhccC-cEEEecCccc-CCCCCCccccccCCCCHHHHHHHHh
Q psy17834 121 AVVALHELTREFK-GLISVLCLAPLTNIALTLRLFPQFAQNAK-ELYIMGGNHK-GVGNVTSAAEFNFLTDPEAAHIVLG 197 (325)
Q Consensus 121 a~~~l~~~~~~~~-~~vtiv~iGpLTNiA~al~~~P~~~~~i~-~iviMGG~~~-~~GN~~~~aE~N~~~DPeAA~~Vl~ 197 (325)
-++.+.+.....+ =++-++.+|.=-|-...=...++..+..+ .+|||+|--. .+| |.+|+..|.
T Consensus 18 v~dlllDErAdRedi~vrVvgsgaKM~Pe~veaav~~~~e~~~pDfvi~isPNpaaPG-------------P~kARE~l~ 84 (277)
T COG1927 18 VVDLLLDERADREDIEVRVVGSGAKMDPECVEAAVTEMLEEFNPDFVIYISPNPAAPG-------------PKKAREILS 84 (277)
T ss_pred HHHHHHHhhcccCCceEEEeccccccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCC-------------chHHHHHHh
Confidence 3445555433333 35777777776666644444455666666 7888888532 234 889999998
Q ss_pred cCCCCeEEecC
Q psy17834 198 GFHGPICILPW 208 (325)
Q Consensus 198 s~g~~i~~vpl 208 (325)
.+++|..+++=
T Consensus 85 ~s~~PaiiigD 95 (277)
T COG1927 85 DSDVPAIIIGD 95 (277)
T ss_pred hcCCCEEEecC
Confidence 77899888763
No 35
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=29.97 E-value=63 Score=26.31 Aligned_cols=41 Identities=22% Similarity=0.408 Sum_probs=28.2
Q ss_pred eEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcccCCCCC
Q psy17834 34 IEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVYKGVSKP 76 (325)
Q Consensus 34 i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~~G~~~p 76 (325)
.++++|++..+..- ....-+.+.|+..|..+++|+.|-..|
T Consensus 54 adii~iSsl~~~~~--~~~~~~~~~L~~~g~~~i~vivGG~~~ 94 (132)
T TIGR00640 54 VHVVGVSSLAGGHL--TLVPALRKELDKLGRPDILVVVGGVIP 94 (132)
T ss_pred CCEEEEcCchhhhH--HHHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 88999998876542 234455555666676689999886554
No 36
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=29.54 E-value=2.6e+02 Score=25.37 Aligned_cols=75 Identities=20% Similarity=0.264 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCcchhhccCcEEEecCcccCCCCCCccccccCCCCHHHHHHHHhcC
Q psy17834 120 SAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFNFLTDPEAAHIVLGGF 199 (325)
Q Consensus 120 ~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~aE~N~~~DPeAA~~Vl~s~ 199 (325)
+...++++.+...++ +|+++-+. |+|..|...|.. .+++.||.+.. +.+.+..|.|.+ .++++
T Consensus 101 TT~~~la~~L~~~~~-ltviTNsl--~ia~~l~~~~~~-----~vi~~GG~~~~--------~~~~~~G~~a~~-~l~~~ 163 (253)
T COG1349 101 TTTLALARALPDDNN-LTVITNSL--NIAAALLEKPNI-----EVILLGGTVRK--------KSGSFVGPLAEE-FLRQF 163 (253)
T ss_pred cHHHHHHHHhCcCCC-eEEEeCCH--HHHHHHHhCCCC-----eEEEeCcEEEc--------CCCeEEcHHHHH-HHHhC
Confidence 677778887776554 88887764 567777777644 46899999863 446667775554 45556
Q ss_pred CCCeEEecCCcc
Q psy17834 200 HGPICILPWEAC 211 (325)
Q Consensus 200 g~~i~~vpld~t 211 (325)
..+..+++-+-.
T Consensus 164 ~~d~aFig~~gi 175 (253)
T COG1349 164 NFDKAFIGADGI 175 (253)
T ss_pred cccEEEEecccc
Confidence 788888875433
No 37
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=28.25 E-value=2.4e+02 Score=24.98 Aligned_cols=40 Identities=10% Similarity=0.344 Sum_probs=29.7
Q ss_pred CceEEEeCCCC---------chHHHHHHHHHhC-CCCCceEEEEEEeecCCCC
Q psy17834 5 PRKVILDVDAG---------IDDAWALLLMLKA-EQKNLIEIIAITCCHGNAE 47 (325)
Q Consensus 5 ~~kvIiDtD~G---------~DDa~Al~~al~~-~~~~~i~l~gVt~v~Gn~~ 47 (325)
+.+|+|..|+| .+++..++-.+.. +. +++.|+.|-+|..+
T Consensus 120 ~~~V~l~vdtg~gm~R~G~~~~e~~~~~~~i~~~~~---l~l~Gl~th~~~~~ 169 (229)
T TIGR00044 120 PLNVLLQINISDEESKSGIQPEELLELAIQIEELKH---LKLRGLMTIGAPTD 169 (229)
T ss_pred CceEEEEEECCCCCCCCCCCHHHHHHHHHHHhcCCC---CeEEEEEEeCCCCC
Confidence 45678777773 3678888777664 54 99999999998754
No 38
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=28.02 E-value=1.5e+02 Score=27.20 Aligned_cols=55 Identities=29% Similarity=0.398 Sum_probs=33.1
Q ss_pred ceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcc
Q psy17834 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVY 70 (325)
Q Consensus 6 ~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~ 70 (325)
-.|||||-+|..|.-+.+++-... -.=|++.+|.+.... ++.+..+++. .++||-
T Consensus 168 D~vIID~PP~~g~~d~~i~~~~~~------g~viVt~p~~~~~~~-v~ka~~~~~~---~~~~vl 222 (265)
T COG0489 168 DYVIIDTPPGTGDADATVLQRIPD------GVVIVTTPGKTALED-VKKAIDMLEK---AGIPVL 222 (265)
T ss_pred CEEEEeCCCCchHHHHHHHhccCC------eEEEEeCCccchHHH-HHHHHHHHHh---cCCceE
Confidence 369999999998887776664432 233445667775543 3344444444 445553
No 39
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=27.46 E-value=1e+02 Score=28.16 Aligned_cols=39 Identities=38% Similarity=0.509 Sum_probs=29.8
Q ss_pred CCCCceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCC
Q psy17834 2 SIYPRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNA 46 (325)
Q Consensus 2 ~~~~~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~ 46 (325)
+|+|.-+|+|-=.--+|++|++-|+... +.-|||.+||.
T Consensus 216 sm~PEViIvDEIGt~~d~~A~~ta~~~G------Vkli~TaHG~~ 254 (308)
T COG3854 216 SMSPEVIIVDEIGTEEDALAILTALHAG------VKLITTAHGNG 254 (308)
T ss_pred hcCCcEEEEeccccHHHHHHHHHHHhcC------cEEEEeecccc
Confidence 4667767777544479999999999876 45678999986
No 40
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=26.68 E-value=2.8e+02 Score=24.92 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=47.9
Q ss_pred cHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCcchhhccCcEEEecCcccCCCCCCccccccCCCCHHHHHHHHhcC
Q psy17834 120 SAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFNFLTDPEAAHIVLGGF 199 (325)
Q Consensus 120 ~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~aE~N~~~DPeAA~~Vl~s~ 199 (325)
.-...|.+.+... ++||++-.+ ++|..|...|.+ ++++.||.+.. +.+....|.|.+.+=+ +
T Consensus 103 tT~~~l~~~L~~~--~ltVvTNs~--~ia~~l~~~~~~-----~vil~GG~~~~--------~~~~~~G~~a~~~l~~-~ 164 (240)
T PRK10411 103 STCWYLARQLPDI--NIQVFTNSH--PICQELGKRERI-----QLISSGGTLER--------KYGCYVNPSLISQLKS-L 164 (240)
T ss_pred HHHHHHHHhhCCC--CeEEEeCCH--HHHHHHhcCCCC-----EEEEECCEEeC--------CCCceECHHHHHHHHh-c
Confidence 5556677766532 488877654 456666666664 48999999863 4466778887766554 5
Q ss_pred CCCeEEecCC
Q psy17834 200 HGPICILPWE 209 (325)
Q Consensus 200 g~~i~~vpld 209 (325)
.....+++-+
T Consensus 165 ~~d~afis~~ 174 (240)
T PRK10411 165 EIDLFIFSCE 174 (240)
T ss_pred CCCEEEEece
Confidence 6777777654
No 41
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=26.44 E-value=3.6e+02 Score=24.18 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=46.5
Q ss_pred CceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCC
Q psy17834 5 PRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRK 65 (325)
Q Consensus 5 ~~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~ 65 (325)
++|.|+=.=.|.|-...+.+|+... .+|.+||--+|.-. ..-.+.+.++.+.+|-.
T Consensus 2 ~~kavvl~SGG~DStt~l~~a~~~~----~ev~alsfdYGQrh-~~Ele~A~~iak~lgv~ 57 (222)
T COG0603 2 MKKAVVLLSGGLDSTTCLAWAKKEG----YEVHALTFDYGQRH-RKELEAAKELAKKLGVP 57 (222)
T ss_pred CceEEEEccCChhHHHHHHHHHhcC----CEEEEEEeeCCCCc-HHHHHHHHHHHHHcCCC
Confidence 3556666678999999999998875 78999999999887 67788899999999854
No 42
>CHL00181 cbbX CbbX; Provisional
Probab=25.17 E-value=1.2e+02 Score=28.13 Aligned_cols=46 Identities=9% Similarity=0.054 Sum_probs=37.4
Q ss_pred cHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCcchhhccCcEE
Q psy17834 120 SAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELY 165 (325)
Q Consensus 120 ~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~~~~~i~~iv 165 (325)
++++.|.+.+..+.+.+.||+.|.-..+..++..+|.+.+++..++
T Consensus 146 e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i 191 (287)
T CHL00181 146 EAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHV 191 (287)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceE
Confidence 5777788877776677889999988888888899999999987533
No 43
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=24.74 E-value=1.3e+02 Score=29.53 Aligned_cols=57 Identities=19% Similarity=0.122 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHhCCCcEEEE---EccchHHHHHHHHHCcchhhccCcEEEecCcccCCCC
Q psy17834 120 SAVVALHELTREFKGLISVL---CLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGN 176 (325)
Q Consensus 120 ~a~~~l~~~~~~~~~~vtiv---~iGpLTNiA~al~~~P~~~~~i~~iviMGG~~~~~GN 176 (325)
+-++.|.+.++....+++++ --|.++=.|.|+..+..-..+++.++.|||-+...-|
T Consensus 154 DYi~~l~~~i~~~G~~v~l~GvCqgG~~~laa~Al~a~~~~p~~~~sltlm~~PID~~~~ 213 (406)
T TIGR01849 154 DYIDYLIEFIRFLGPDIHVIAVCQPAVPVLAAVALMAENEPPAQPRSMTLMGGPIDARAS 213 (406)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEchhhHHHHHHHHHHHhcCCCCCcceEEEEecCccCCCC
Confidence 56778888887654335444 4577778888887776666679999999999875443
No 44
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=24.73 E-value=3.3e+02 Score=26.23 Aligned_cols=58 Identities=21% Similarity=0.332 Sum_probs=42.9
Q ss_pred CCCceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCC-HHHHHHHHHHHHHHhCC
Q psy17834 3 IYPRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAE-LSEVVDNVCRVLQAFGR 64 (325)
Q Consensus 3 ~~~~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~-~~~~~~n~~~~l~~~g~ 64 (325)
....||++=.-.|+|=.+++.++.... .++.||+...++.. .....+.++++.+.+|-
T Consensus 3 ~~~~kVlValSGGVDSsvaa~LL~~~G----~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgI 61 (360)
T PRK14665 3 EKNKRVLLGMSGGTDSSVAAMLLLEAG----YEVTGVTFRFYEFNGSTEYLEDARALAERLGI 61 (360)
T ss_pred CCCCEEEEEEcCCHHHHHHHHHHHHcC----CeEEEEEEecCCCCCChHHHHHHHHHHHHhCC
Confidence 345689999999999988877776542 88999998765432 23456778888888873
No 45
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=24.65 E-value=3.4e+02 Score=24.51 Aligned_cols=73 Identities=12% Similarity=0.129 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCcchhhccCcEEEecCcccCCCCCCccccccCCCCHHHHHHHHhcC
Q psy17834 120 SAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFNFLTDPEAAHIVLGGF 199 (325)
Q Consensus 120 ~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~aE~N~~~DPeAA~~Vl~s~ 199 (325)
+-...|.+.+... ..+||++-.. ++|..|...|++ ++++.||.+.. +.+.+..+.|.+.+=+ +
T Consensus 102 tT~~~la~~L~~~-~~ltvvTnsl--~i~~~l~~~~~~-----~villGG~~~~--------~~~~~~G~~~~~~l~~-~ 164 (252)
T PRK10681 102 TTTPWIIEAIDNE-LPFTAVCYSL--NTFLALQEKPHC-----RAILCGGEFHA--------SNAIFKPLDFQQTLDN-I 164 (252)
T ss_pred ccHHHHHHhcCCC-CCeEEEECCH--HHHHHHhhCCCC-----EEEEECcEEec--------CcceeeCHHHHHHHHh-h
Confidence 4556667766543 2488888643 456677777765 59999999863 3366778877766554 5
Q ss_pred CCCeEEecCC
Q psy17834 200 HGPICILPWE 209 (325)
Q Consensus 200 g~~i~~vpld 209 (325)
.....+++-+
T Consensus 165 ~~D~afig~~ 174 (252)
T PRK10681 165 CPDIAFYSAA 174 (252)
T ss_pred CCCEEEEeCc
Confidence 7788777754
No 46
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=24.60 E-value=2.3e+02 Score=27.31 Aligned_cols=56 Identities=18% Similarity=0.273 Sum_probs=40.7
Q ss_pred CCCCCceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCC
Q psy17834 1 MSIYPRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGR 64 (325)
Q Consensus 1 ~~~~~~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~ 64 (325)
|-....||++=.-.|+|-.+++.++... . .+++||+.-.... ..+.+.++.+.+|-
T Consensus 1 ~~~~~~kVlVa~SGGvDSsv~a~lL~~~-G---~eV~av~~~~~~~----e~~~a~~va~~LGI 56 (362)
T PRK14664 1 MKESKKRVLVGMSGGIDSTATCLMLQEQ-G---YEIVGVTMRVWGD----EPQDARELAARMGI 56 (362)
T ss_pred CCCCCCEEEEEEeCCHHHHHHHHHHHHc-C---CcEEEEEecCcch----hHHHHHHHHHHhCC
Confidence 5566789999999999998877766543 2 7899999865322 23457778787773
No 47
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=24.34 E-value=4e+02 Score=22.02 Aligned_cols=87 Identities=20% Similarity=0.262 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHHhCCC-CCCccc-CCCCCCCCCCccCccccccccccCCCCCCCCCCC-CCCCcccccCCCCCcHHH
Q psy17834 47 ELSEVVDNVCRVLQAFGRK-NIPVYK-GVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLG-DSDTLDRSCHVENISAVV 123 (325)
Q Consensus 47 ~~~~~~~n~~~~l~~~g~~-~IPV~~-G~~~pl~~~~~~~~~a~~~~~~hG~dglg~~~~~-~p~~~~~~~~~~~~~a~~ 123 (325)
..+++.+.+.++|+.+..+ .||+|. |+..|-..... ..| .+. .+..|. - .+++
T Consensus 12 ~Y~~ai~~vg~il~~Yd~dk~~p~~GFGa~~~~~~~vs--------h~F---------~ln~~~~~p~-----~--~Gi~ 67 (146)
T PF07002_consen 12 PYQQAIRAVGEILQDYDSDKMIPAYGFGAKIPPDYSVS--------HCF---------PLNGNPQNPE-----C--QGID 67 (146)
T ss_pred HHHHHHHHHHHHHHhhccCCccceeccCCcCCCCcccc--------cce---------eeecCCCCCc-----c--cCHH
Confidence 4577888889999999754 599874 77544221100 001 010 010111 1 4566
Q ss_pred HHHHHHHhCCCcEEEEEccchHHHHHHHHHCcchhhc
Q psy17834 124 ALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQN 160 (325)
Q Consensus 124 ~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~~~~~ 160 (325)
-++++-++.=..|.+ .|| ||+|-.++..-+++++
T Consensus 68 gvl~~Y~~~~~~v~l--~GP-T~fapiI~~a~~~a~~ 101 (146)
T PF07002_consen 68 GVLEAYRKALPKVQL--SGP-TNFAPIINHAAKIAKQ 101 (146)
T ss_pred HHHHHHHHHhhheEE--CCC-ccHHHHHHHHHHHHhh
Confidence 677766655333444 788 9999999988777763
No 48
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=23.82 E-value=2.9e+02 Score=24.72 Aligned_cols=58 Identities=21% Similarity=0.283 Sum_probs=44.1
Q ss_pred CceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCC
Q psy17834 5 PRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRK 65 (325)
Q Consensus 5 ~~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~ 65 (325)
..+|++=.-.|+|-++.+.+|..... ..++.+++.-.|..+ ......++++.+.+|-.
T Consensus 23 ~~~vvv~lSGGiDSs~~a~la~~~~~--~~~v~~~~~~~~~~~-~~~~~~a~~~a~~lgi~ 80 (248)
T cd00553 23 FKGVVLGLSGGIDSALVAALAVRALG--RENVLALFMPSRYSS-EETREDAKELAEALGIE 80 (248)
T ss_pred CCCEEEeCCCcHHHHHHHHHHHHHhC--cccEEEEECCCCCCC-HHHHHHHHHHHHHhCCe
Confidence 46799999999999888777765421 257899998888654 34677889999998853
No 49
>KOG2805|consensus
Probab=23.47 E-value=3.3e+02 Score=25.95 Aligned_cols=59 Identities=17% Similarity=0.283 Sum_probs=42.6
Q ss_pred CCCCCceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeec-------C-CCCHHHHHHHHHHHHHHhC
Q psy17834 1 MSIYPRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCH-------G-NAELSEVVDNVCRVLQAFG 63 (325)
Q Consensus 1 ~~~~~~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~-------G-n~~~~~~~~n~~~~l~~~g 63 (325)
|-.++.+|++=.-.|+|-++|..++.... .++.||-.-. | -++.+.-.+-|.++.+.++
T Consensus 1 ~p~~~~~VvvamSgGVDSsVaa~Ll~~~g----~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~Ln 67 (377)
T KOG2805|consen 1 MPEKPDRVVVAMSGGVDSSVAARLLAARG----YNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLN 67 (377)
T ss_pred CCcccceEEEEecCCchHHHHHHHHHhcC----CCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhC
Confidence 45677899999999999999988776654 7788886532 4 3455655666667666554
No 50
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=23.28 E-value=2.3e+02 Score=27.95 Aligned_cols=73 Identities=10% Similarity=0.008 Sum_probs=49.6
Q ss_pred cHHHHHHHHHHhC---CCcEEEEEccchHHHHHHHHHCcchhhccCcEEEecCcccCCCCCCccccccCCCC-HHHHHHH
Q psy17834 120 SAVVALHELTREF---KGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFNFLTD-PEAAHIV 195 (325)
Q Consensus 120 ~a~~~l~~~~~~~---~~~vtiv~iGpLTNiA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~aE~N~~~D-PeAA~~V 195 (325)
.|.+++.+-+++. |+.|||..-+.=--.+.++...|.-....++.++|.|+...... ..-. -+.++.+
T Consensus 191 ~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs~~~~~~--------~~~~~~~~~~~l 262 (535)
T PF00135_consen 191 LALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGSALSPWA--------TSENPEQQAQKL 262 (535)
T ss_dssp HHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--TTSTTS--------SBSHHHHHHHHH
T ss_pred HHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccccccccc--------cccccchhhhhh
Confidence 5777777777775 67899998877666666666669989999999999997543221 1222 3566777
Q ss_pred HhcCC
Q psy17834 196 LGGFH 200 (325)
Q Consensus 196 l~s~g 200 (325)
.+..|
T Consensus 263 a~~lg 267 (535)
T PF00135_consen 263 AKALG 267 (535)
T ss_dssp HHHTT
T ss_pred hhhhc
Confidence 76544
No 51
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=22.92 E-value=3.1e+02 Score=26.28 Aligned_cols=57 Identities=19% Similarity=0.360 Sum_probs=39.0
Q ss_pred eEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecC---------CCCHHHHHHHHHHHHHHhCCCCCCcc
Q psy17834 7 KVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHG---------NAELSEVVDNVCRVLQAFGRKNIPVY 70 (325)
Q Consensus 7 kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~G---------n~~~~~~~~n~~~~l~~~g~~~IPV~ 70 (325)
||++=.-.|+|=.+++.++.... .++.||+.... .+..+...+.++++.+.+| ||.+
T Consensus 2 kVlValSGGvDSsv~a~lL~~~G----~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lg---Ip~~ 67 (352)
T TIGR00420 2 KVIVGLSGGVDSSVSAYLLKQQG----YEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLG---IPLE 67 (352)
T ss_pred eEEEEEeCCHHHHHHHHHHHHcC----CeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcC---CCEE
Confidence 56677778999888887776643 78999998421 1233445677788878776 5654
No 52
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=22.11 E-value=1.7e+02 Score=24.40 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=32.0
Q ss_pred eEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcccCCCCCC
Q psy17834 34 IEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVYKGVSKPL 77 (325)
Q Consensus 34 i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~~G~~~pl 77 (325)
++++||++..|--. .-+.-....|...|..+|.|+.|..-|.
T Consensus 64 v~vIgvSsl~g~h~--~l~~~lve~lre~G~~~i~v~~GGvip~ 105 (143)
T COG2185 64 VDVIGVSSLDGGHL--TLVPGLVEALREAGVEDILVVVGGVIPP 105 (143)
T ss_pred CCEEEEEeccchHH--HHHHHHHHHHHHhCCcceEEeecCccCc
Confidence 89999999988542 2344556677889999999888876664
No 53
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=21.91 E-value=2.8e+02 Score=24.35 Aligned_cols=50 Identities=18% Similarity=0.253 Sum_probs=38.6
Q ss_pred EeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCC
Q psy17834 10 LDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGR 64 (325)
Q Consensus 10 iDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~ 64 (325)
+=.=.|+|=..++.+|.... .++.+|+..+|-. .+.-.++++++.+.+|.
T Consensus 4 vl~SGG~DSt~~l~~~~~~~----~~v~al~~~YGq~-~~~El~~a~~i~~~l~v 53 (209)
T PF06508_consen 4 VLFSGGLDSTTCLYWAKKEG----YEVYALTFDYGQR-HRRELEAAKKIAKKLGV 53 (209)
T ss_dssp EE--SSHHHHHHHHHHHHH-----SEEEEEEEESSST-TCHHHHHHHHHHHHCT-
T ss_pred EEeCCCHHHHHHHHHHHHcC----CeEEEEEEECCCC-CHHHHHHHHHHHHHhCC
Confidence 33446788888888787764 7899999999988 66778999999999986
No 54
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=21.90 E-value=4e+02 Score=25.10 Aligned_cols=40 Identities=30% Similarity=0.447 Sum_probs=30.7
Q ss_pred CceEEEeCCCC-------c-hHHHHHHHHHh-CCCCCceEEEEEEeecCCCC
Q psy17834 5 PRKVILDVDAG-------I-DDAWALLLMLK-AEQKNLIEIIAITCCHGNAE 47 (325)
Q Consensus 5 ~~kvIiDtD~G-------~-DDa~Al~~al~-~~~~~~i~l~gVt~v~Gn~~ 47 (325)
+.+|+|+-|+| . +++..++-.+. .+. +++.||.+-.|...
T Consensus 121 ~~~V~l~vd~G~~R~Gv~~~~~~~~l~~~i~~~~~---l~l~Gi~~h~g~~~ 169 (353)
T cd06820 121 PLEVLVEVDSGMNRCGVQTPEDAVALARAIASAPG---LRFRGIFTYPGHSY 169 (353)
T ss_pred eeEEEEEECCCCCcCCCCChHHHHHHHHHHHhCCC---cEEEEEEecCCccC
Confidence 45799999986 3 67777776665 354 99999999988754
No 55
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=21.34 E-value=2.8e+02 Score=21.41 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=33.4
Q ss_pred eCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcccCCCCC
Q psy17834 11 DVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVYKGVSKP 76 (325)
Q Consensus 11 DtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~~G~~~p 76 (325)
+.+....+....+. ..+ .++++++++.+... ..+....+.++..+..+++|+.|...+
T Consensus 34 g~~~~~~~l~~~~~---~~~---pdvV~iS~~~~~~~--~~~~~~i~~l~~~~~~~~~i~vGG~~~ 91 (119)
T cd02067 34 GVDVPPEEIVEAAK---EED---ADAIGLSGLLTTHM--TLMKEVIEELKEAGLDDIPVLVGGAIV 91 (119)
T ss_pred CCCCCHHHHHHHHH---HcC---CCEEEEeccccccH--HHHHHHHHHHHHcCCCCCeEEEECCCC
Confidence 44444555444432 222 67999998754432 334455555566654479998887544
No 56
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=21.34 E-value=5.4e+02 Score=23.18 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=48.7
Q ss_pred cHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCcchhhccCcEEEecCcccCCCCCCccccccCCCCHHHHHHHHhcC
Q psy17834 120 SAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFNFLTDPEAAHIVLGGF 199 (325)
Q Consensus 120 ~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~aE~N~~~DPeAA~~Vl~s~ 199 (325)
.-...+.+.+... ..+||++-.. ++|..|...|++ ++++.||.+.. +..-...|.|.+.+=+ .
T Consensus 101 tT~~~la~~L~~~-~~ltVvTNsl--~ia~~l~~~~~~-----~villGG~~~~--------~~~~~~G~~a~~~l~~-~ 163 (252)
T PRK10906 101 TTPEAVAHALLNH-SNLRIVTNNL--NVANTLMAKEDF-----RIILAGGELRS--------RDGGIIGEATLDFISQ-F 163 (252)
T ss_pred HHHHHHHHHhcCC-CCcEEEECcH--HHHHHHhhCCCC-----EEEEECCEEec--------CCCccCCHHHHHHHHh-c
Confidence 4556677766543 2488876543 466677767764 48999999863 3466778888777654 5
Q ss_pred CCCeEEecCC
Q psy17834 200 HGPICILPWE 209 (325)
Q Consensus 200 g~~i~~vpld 209 (325)
..++.+++-+
T Consensus 164 ~~d~afi~~~ 173 (252)
T PRK10906 164 RLDFGILGIS 173 (252)
T ss_pred cCCEEEEcCC
Confidence 6777777644
No 57
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=21.22 E-value=1.4e+02 Score=26.93 Aligned_cols=44 Identities=11% Similarity=0.060 Sum_probs=36.3
Q ss_pred cHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCcchhhccCc
Q psy17834 120 SAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKE 163 (325)
Q Consensus 120 ~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~~~~~i~~ 163 (325)
++++.+.+.+..+.+.+.++.+|.-+.+..++..+|.+.+++..
T Consensus 128 ~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~ 171 (261)
T TIGR02881 128 EAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPI 171 (261)
T ss_pred HHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccce
Confidence 57778888877777788888889888888888899999998853
No 58
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=20.66 E-value=2.4e+02 Score=23.49 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=38.4
Q ss_pred eEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCH-HHHHHHHHHHHHHhC
Q psy17834 7 KVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAEL-SEVVDNVCRVLQAFG 63 (325)
Q Consensus 7 kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~-~~~~~n~~~~l~~~g 63 (325)
||++=...|.|..+++.++.........++.+|+..+|.... ....+.+.++.+.+|
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~ 58 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRPESDEEAAFVADLCAKLG 58 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHHHHHHHHHHcC
Confidence 466777889998887777755421112578999988885432 356667777777765
No 59
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=20.58 E-value=1.6e+02 Score=24.00 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=29.9
Q ss_pred eEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcccCCCCCC
Q psy17834 34 IEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVYKGVSKPL 77 (325)
Q Consensus 34 i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~~G~~~pl 77 (325)
.+++++|+..+.. ....++....|+..+..+++|..|-.-+.
T Consensus 55 ~d~V~lS~~~~~~--~~~~~~~~~~L~~~~~~~~~i~vGG~~~~ 96 (137)
T PRK02261 55 ADAILVSSLYGHG--EIDCRGLREKCIEAGLGDILLYVGGNLVV 96 (137)
T ss_pred CCEEEEcCccccC--HHHHHHHHHHHHhcCCCCCeEEEECCCCC
Confidence 7799999887733 34556666777777766899888765443
Done!