Query psy17834
Match_columns 325
No_of_seqs 184 out of 1179
Neff 7.8
Searched_HMMs 29240
Date Sat Aug 17 00:11:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17834.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17834hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t8j_A Purine nucleosidase, (I 100.0 3.2E-78 1.1E-82 564.4 31.3 300 6-324 2-308 (311)
2 1q8f_A Pyrimidine nucleoside h 100.0 8.5E-78 2.9E-82 563.1 30.1 302 3-324 1-306 (313)
3 1yoe_A Hypothetical protein YB 100.0 1.5E-77 5.1E-82 563.3 29.9 303 3-324 11-318 (322)
4 2mas_A Inosine-uridine nucleos 100.0 5.7E-77 2E-81 557.9 30.9 301 6-324 2-307 (314)
5 3fz0_A Nucleoside hydrolase, p 100.0 8.7E-77 3E-81 562.6 27.8 306 3-324 4-356 (360)
6 3t8i_A Purine nucleosidase, (I 100.0 2.1E-76 7E-81 550.0 25.7 298 6-324 2-304 (306)
7 2c40_A Inosine-uridine preferr 100.0 2E-72 6.7E-77 527.2 24.3 298 5-324 1-307 (312)
8 3epw_A IAG-nucleoside hydrolas 100.0 9.4E-73 3.2E-77 533.4 19.5 305 3-324 11-335 (338)
9 2yhg_A SDE_182CT, cellulose-bi 99.1 4.5E-10 1.5E-14 107.6 13.0 138 4-170 27-188 (437)
10 2der_A TRNA-specific 2-thiouri 60.5 30 0.001 32.1 8.5 63 1-70 13-82 (380)
11 2hma_A Probable tRNA (5-methyl 39.3 75 0.0026 29.3 7.5 60 4-70 8-74 (376)
12 3bl5_A Queuosine biosynthesis 38.8 74 0.0025 26.2 6.8 56 4-64 2-57 (219)
13 3k32_A Uncharacterized protein 33.7 1.1E+02 0.0036 25.3 6.9 51 6-63 7-57 (203)
14 1vl2_A Argininosuccinate synth 25.0 1.9E+02 0.0066 27.1 7.7 55 3-64 12-66 (421)
15 4f4h_A Glutamine dependent NAD 22.9 95 0.0033 30.3 5.3 63 5-70 300-364 (565)
16 2yxb_A Coenzyme B12-dependent 21.8 1.4E+02 0.0047 23.8 5.3 38 34-73 70-107 (161)
17 1wy5_A TILS, hypothetical UPF0 21.0 4.2E+02 0.014 23.2 9.0 64 4-70 23-88 (317)
No 1
>3t8j_A Purine nucleosidase, (IUNH-1); nucleoside hydrolase, thermostable protein, open (alpha,beta structure, rossmann fold, NH-fold; 1.60A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.2e-78 Score=564.43 Aligned_cols=300 Identities=27% Similarity=0.447 Sum_probs=265.5
Q ss_pred ceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCccCc
Q psy17834 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVYKGVSKPLIPKDLSHK 85 (325)
Q Consensus 6 ~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~~G~~~pl~~~~~~~~ 85 (325)
+|||||||+|+||++||+|| .+|+ +||+|||+++||++++++++|++++|+.+|+ +||||+|+.+||.++...
T Consensus 2 ~kvIiDtD~G~DDa~Al~~a-~~p~---iel~gIttv~GN~~~~~~~~Na~~ll~~~g~-diPV~~Ga~~Pl~~~~~~-- 74 (311)
T 3t8j_A 2 RHFIIDCDTAEDDVLSLYLL-LKNN---IDVVAVTIVEGNISYEQEVKNALWALEQVNR-EIPVYPGANKPLLKNYIT-- 74 (311)
T ss_dssp CEEEEEECCSHHHHHHHHHH-HHTT---CEEEEEEECSSSSCHHHHHHHHHHHHHHTTC-CCCEEECCSSCSSSCCCC--
T ss_pred ceEEEECCCChHHHHHHHHH-cCCC---CEEEEEEEccCCCCHHHHHHHHHHHHHHcCC-CCCEEECCCCCCCCCCcc--
Confidence 69999999999999999999 7788 9999999999999999999999999999999 999999999999876433
Q ss_pred cccccccccCCCCCCCCCCCCCCCcccccCCCCCcHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCcchhhccCcEE
Q psy17834 86 YSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELY 165 (325)
Q Consensus 86 ~a~~~~~~hG~dglg~~~~~~p~~~~~~~~~~~~~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~~~~~i~~iv 165 (325)
+ .++||.+|||+..+ | .+.. ..+++ +|+++|+++++++|++||||++|||||||+||+++|+++++||+||
T Consensus 75 -a---~~~hG~~Glg~~~~--p-~~~~-~~~~~-~A~~~i~~~~~~~~~~vtiva~GpLTNlA~al~~~P~i~~~i~~iv 145 (311)
T 3t8j_A 75 -V---EKVHGKGGIGDVTV--E-PKRL-KAQEK-HAALAIIDLANEYAGELEFLAISPLTNLALAYLLDNSIVKKIKKVW 145 (311)
T ss_dssp -C---HHHHCTTSSSSCCC--C-CSSC-CCCSS-CHHHHHHHHHHHTTTTEEEEECSCSHHHHHHHHHCTTHHHHEEEEE
T ss_pred -c---hhhcCCCCCCCCCC--C-CCCC-CCCCc-hHHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHChHHHhhcCEEE
Confidence 2 78999999999876 5 2332 24555 9999999999999999999999999999999999999999999999
Q ss_pred EecCcccCCCCCCccccccCCCCHHHHHHHHhcCCCCeEEecCCccccccCChHHHHHHhCCCChHHHHHHHHHHHHHhh
Q psy17834 166 IMGGNHKGVGNVTSAAEFNFLTDPEAAHIVLGGFHGPICILPWEACLGIDISYEWRYDTLGASDAPYISLLNRLERGISD 245 (325)
Q Consensus 166 iMGG~~~~~GN~~~~aE~N~~~DPeAA~~Vl~s~g~~i~~vpld~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (325)
||||++...||++|.+|||||+|||||++||++ |.|++|+|||+|.+..++.+. ++++.+.+++.++++.++++. |.
T Consensus 146 iMGG~~~~~GN~tp~aEfN~~~DPeAA~~V~~s-g~~i~~v~ldvt~~~~lt~~~-~~~l~~~~~~~~~~~~~~~~~-~~ 222 (311)
T 3t8j_A 146 VMGGAVFGIGNITPVAEFNIWVDPDAAKIVFNA-GFDITMIPWDVIINYPVTDEE-WNVIKNMKTRMSELYVSMYLH-YR 222 (311)
T ss_dssp EECCCTTSCCSSSSSCCHHHHHCHHHHHHHHHT-TCCEEEECHHHHTTSCBCHHH-HHHHHTSCSHHHHHHHHHHHH-HH
T ss_pred EcCCcccCCCCCCchhhhccccCHHHHHHHHhC-CCCEEEecccccccccCCHHH-HHHHHhhCCHHHHHHHHHHHH-HH
Confidence 999998889999999999999999999999997 999999999999878888754 366666678888888776543 22
Q ss_pred hh--hhcCCCCCCCCcHHHHHHHhcCCceeeEEEeeEEEEeeCCcccceEEEecCC-----CCCCCeEEEeccCHHHHHH
Q psy17834 246 RA--ISMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVDVVH-----SKTPNVRMIDTVDSRLLKD 318 (325)
Q Consensus 246 ~~--~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~~v~V~~~g~~~~G~tv~d~~~-----~~~~~v~v~~~vd~~~f~~ 318 (325)
.+ ..++..++++||++|++++++|++|+++++.+|+||++|+++||+|++|+.+ ++++|++|++++|.++|++
T Consensus 223 ~~~~~~~g~~g~~lhD~lava~~l~P~l~~~~~~~~v~Ve~~g~~t~G~tv~d~~~~~~~~~~~~n~~v~~~vD~~~f~~ 302 (311)
T 3t8j_A 223 QYSSTVQKINGHPHPDAITTAIAIDGSIATRREKRFVVIDNTDNITRGMTLVDRFDADTSWSDKPNAEIVYEINKKSFME 302 (311)
T ss_dssp HHHHHTSCCSSBCCHHHHHHHHHHCGGGEEEEEEEEEEECCSSSTTTTCEEEECSCSSSCSCSSCCEEEEEEECHHHHHH
T ss_pred HHHHhhcCCCCCcCcCHHHHHHHhCHHHhhccceeeEEEecCCCCCCceEEEecCCCcccCCCCCCEEEeeccCHHHHHH
Confidence 21 2456778999999999999999999756899999999999999999999864 3358999999999999999
Q ss_pred HHhhhh
Q psy17834 319 MLLWIK 324 (325)
Q Consensus 319 ~l~~~~ 324 (325)
+|.+++
T Consensus 303 ~~~~~l 308 (311)
T 3t8j_A 303 KIYDLL 308 (311)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 2
>1q8f_A Pyrimidine nucleoside hydrolase; open alpha-beta structure, NH-fold; 1.70A {Escherichia coli} SCOP: c.70.1.1 PDB: 3b9x_A* 3mkn_A* 3mkm_A*
Probab=100.00 E-value=8.5e-78 Score=563.11 Aligned_cols=302 Identities=24% Similarity=0.360 Sum_probs=264.3
Q ss_pred CCCceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCc
Q psy17834 3 IYPRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVYKGVSKPLIPKDL 82 (325)
Q Consensus 3 ~~~~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~~G~~~pl~~~~~ 82 (325)
|+++|||||||+|+||++||+|||++|+ +||+|||+++||++++++++|++++|+. |+++||||+|+.+||.++..
T Consensus 1 M~~~~vIiDtD~GiDDa~Al~~al~~p~---i~l~gIt~v~GN~~~~~~~~na~~ll~~-g~~dIPV~~Ga~~pl~~~~~ 76 (313)
T 1q8f_A 1 MEKRKIILDCDPGHDDAIAIMMAAKHPA---IDLLGITIVAGNQTLDKTLINGLNVCQK-LEINVPVYAGMPQPIMRQQI 76 (313)
T ss_dssp --CEEEEEEECCCHHHHHHHHHHHHCTT---EEEEEEEECSSSSCHHHHHHHHHHHHHH-TTCCCCEEECCSSCSSSCCC
T ss_pred CCCceEEEECCCChHHHHHHHHHHhCCC---CEEEEEEEccCCCCHHHHHHHHHHHHHc-CCCCCCEEeCCCccccCCCC
Confidence 3578999999999999999999999998 9999999999999999999999999999 99999999999999987643
Q ss_pred cCccccccccccCCCCCCCCCCCCCCCcccccCCCCCcHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCcchhhccC
Q psy17834 83 SHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAK 162 (325)
Q Consensus 83 ~~~~a~~~~~~hG~dglg~~~~~~p~~~~~~~~~~~~~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~~~~~i~ 162 (325)
. + ..+||.+|||+..+ | .+.. ..+.+ +|+++|+++++++|++||||++|||||||+||+++|+++++||
T Consensus 77 ~---a---~~~hG~~Glg~~~~--p-~~~~-~~~~~-~A~~~i~~~~~~~~~~vtiva~GPLTNlA~al~~~P~i~~~i~ 145 (313)
T 1q8f_A 77 V---A---DNIHGDTGLDGPVF--E-PLTR-QAEST-HAVKYIIDTLMASDGDITLVPVGPLSNIAVAMRMQPAILPKIR 145 (313)
T ss_dssp C---C---HHHHCTTSSCSCCC--C-CCCC-CCCSS-CHHHHHHHHHHHSCSCEEEEECSCSHHHHHHHHHCGGGGGGEE
T ss_pred C---c---cccCCCcCCCCCCC--C-CCcc-CCCCC-cHHHHHHHHHHhCCCCEEEEEeccHHHHHHHHHHCHHHHHhCC
Confidence 3 2 67899999999876 5 2332 24555 9999999999999999999999999999999999999999999
Q ss_pred cEEEecCcccCCCCCCccccccCCCCHHHHHHHHhcCCCCeEEecCCccccccCChHHHHHHhCCCChHHHHHHHHHHHH
Q psy17834 163 ELYIMGGNHKGVGNVTSAAEFNFLTDPEAAHIVLGGFHGPICILPWEACLGIDISYEWRYDTLGASDAPYISLLNRLERG 242 (325)
Q Consensus 163 ~iviMGG~~~~~GN~~~~aE~N~~~DPeAA~~Vl~s~g~~i~~vpld~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (325)
+||||||++.. ||++|.||||||+|||||++||++ +.|++|+|||+|++..++.+.. +.+.+.+++..+++.++...
T Consensus 146 ~iviMGG~~~~-GN~tp~aEfN~~~DPeAA~~V~~s-~~~i~~v~ldvt~~~~~t~~~~-~~~~~~~~~~~~~~~~~~~~ 222 (313)
T 1q8f_A 146 EIVLMGGAYGT-GNFTPSAEFNIFADPEAARVVFTS-GVPLVMMGLDLTNQTVCTPDVI-ARMERAGGPAGELFSDIMNF 222 (313)
T ss_dssp EEEEECCCSSC-CSSSSSCCHHHHTCHHHHHHHHTS-CSCEEEECHHHHGGGEECHHHH-HHHHHHCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCC-CCCCchhHHhhccCHHHHHHHHhC-CCCEEEeChhhhhcccCCHHHH-HHHHhcCChHHHHHHHHHHH
Confidence 99999999975 999999999999999999999997 9999999999999999998653 55554567888777665442
Q ss_pred Hhhhh--hhcCCCCCCCCcHHHHHHHhcCCceeeEEEeeEEEEeeCCcccceEEEecCC--CCCCCeEEEeccCHHHHHH
Q psy17834 243 ISDRA--ISMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVDVVH--SKTPNVRMIDTVDSRLLKD 318 (325)
Q Consensus 243 ~~~~~--~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~~v~V~~~g~~~~G~tv~d~~~--~~~~~v~v~~~vd~~~f~~ 318 (325)
|.+. ..++.+++++||++|++++++|++|+ +++.+++|+++|+++||+|++|+.+ ++++|++|++++|.++|++
T Consensus 223 -~~~~~~~~~g~~g~~lhD~lava~~~~p~~~~-~~~~~v~Ve~~g~~t~G~tv~d~~~~~~~~~n~~v~~~vD~~~f~~ 300 (313)
T 1q8f_A 223 -TLKTQFENYGLAGGPVHDATCIGYLINPDGIK-TQEMYVEVDVNSGPCYGRTVCDELGVLGKPANTKVGITIDTDWFWG 300 (313)
T ss_dssp -HHHHHHHHHCCSSEECTTHHHHHHHHCGGGEE-EEEECEEECCCSSTTTTCEEECTTCTTCCCCCEEEEEEECHHHHHH
T ss_pred -HHHHHHhccCcCCCccchHHHHHHHcCcceeE-EEEEEEEEEeCCCCCCCeEEEeccccCCCCCCEEEEEecCHHHHHH
Confidence 2211 13456788999999999999999985 8899999999999999999999864 3458999999999999999
Q ss_pred HHhhhh
Q psy17834 319 MLLWIK 324 (325)
Q Consensus 319 ~l~~~~ 324 (325)
+|.+++
T Consensus 301 ~~~~~l 306 (313)
T 1q8f_A 301 LVEECV 306 (313)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 3
>1yoe_A Hypothetical protein YBEK; pyrimidine nucleoside hydrolase, bacterial nucleosidase, RIB enzyme-product complex, hydrolase; HET: RIB; 1.78A {Escherichia coli} PDB: 3g5i_A*
Probab=100.00 E-value=1.5e-77 Score=563.29 Aligned_cols=303 Identities=28% Similarity=0.364 Sum_probs=261.2
Q ss_pred CCCceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCc
Q psy17834 3 IYPRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVYKGVSKPLIPKDL 82 (325)
Q Consensus 3 ~~~~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~~G~~~pl~~~~~ 82 (325)
.+.+|||||||+|+||++||+|||++|+ +||+|||+++||++++++++|++++|+++|+.+||||+|+.+||.++..
T Consensus 11 ~~~~~viiD~D~GiDDa~AL~~al~~p~---i~l~gIttv~GN~~~~~~~~Na~~ll~~~g~~dIPV~~Ga~~Pl~~~~~ 87 (322)
T 1yoe_A 11 GSALPILLDCDPGHDDAIAIVLALASPE---LDVKAITSSAGNQTPEKTLRNVLRMLTLLNRTDIPVAGGAVKPLMRELI 87 (322)
T ss_dssp CCCEEEEEEECCSHHHHHHHHHHHTCTT---EEEEEEEECSSSSCHHHHHHHHHHHHHHTTCTTSCEEECCSSCSSSCCC
T ss_pred CCCceEEEECCCCHHHHHHHHHHHhCCC---CEEEEEEEcCCCCCHHHHHHHHHHHHHHcCCCCCCEEeCCCccccCCCc
Confidence 4578999999999999999999999998 9999999999999999999999999999999999999999999987643
Q ss_pred cCccccccccccCCCCCCCCCCCCCCCcccccCCCCCcHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCcchhhccC
Q psy17834 83 SHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAK 162 (325)
Q Consensus 83 ~~~~a~~~~~~hG~dglg~~~~~~p~~~~~~~~~~~~~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~~~~~i~ 162 (325)
. + ..+||.+|||+..+ | .+.. ..+.+ +|+++|+++++++|++||||++|||||||+||+++|+++++||
T Consensus 88 ~---a---~~~HG~~Glg~~~~--p-~~~~-~~~~~-~Av~~i~~~l~~~p~~vtiva~GPLTNlA~al~~~P~i~~~i~ 156 (322)
T 1yoe_A 88 I---A---DNVHGESGLDGPAL--P-EPTF-APQNC-TAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSHPELHSKIA 156 (322)
T ss_dssp C---C--------CCSSCSSCC--C-CCSS-CCCSS-CHHHHHHHHHHHCSSCEEEEECSCSHHHHHHHHHCGGGGGGEE
T ss_pred c---c---cccCCCCCCCCcCC--C-CCcC-CCCcc-hHHHHHHHHHHhCCCCEEEEEeccHHHHHHHHHHChHHHhhCC
Confidence 3 2 67999999999876 5 2332 24554 9999999999999999999999999999999999999999999
Q ss_pred cEEEecCcccCCCCCCccccccCCCCHHHHHHHHhcCCCCeEEecCCccccccCChHHHHHHhCCCChHHHHHHHHHHHH
Q psy17834 163 ELYIMGGNHKGVGNVTSAAEFNFLTDPEAAHIVLGGFHGPICILPWEACLGIDISYEWRYDTLGASDAPYISLLNRLERG 242 (325)
Q Consensus 163 ~iviMGG~~~~~GN~~~~aE~N~~~DPeAA~~Vl~s~g~~i~~vpld~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (325)
+||||||++. .||++|.||||||+|||||++||++ +.|++|+|||+|++..++.+.. +++.+.+++..+++.++...
T Consensus 157 ~iviMGGa~~-~GN~tp~AEfN~~~DPeAA~~V~~s-~~~i~~v~ldvt~~~~~t~~~~-~~l~~~~~~~~~~~~~~~~~ 233 (322)
T 1yoe_A 157 RIVIMGGAMG-LGNWTPAAEFNIYVDPEAAEIVFQS-GIPVVMAGLDVTHKAQIHVEDT-ERFRAIGNPVSTIVAELLDF 233 (322)
T ss_dssp EEEEECCCSS-CCSSSSSCCHHHHHCHHHHHHHHTS-SSCEEEECHHHHTTSEECHHHH-HHHHHHCSHHHHHHHHHHHH
T ss_pred EEEEeCCCCC-CCCCCcccHhhcccCHHHHHHHHhC-CCCEEEECccccccccCCHHHH-HHHHhhCCcHHHHHHHHHHH
Confidence 9999999985 6999999999999999999999997 9999999999999999998653 55554566777777666543
Q ss_pred Hhhh---hhhcCCCCCCCCcHHHHHHHhcCCceeeEEEeeEEEEeeCCcccceEEEecCC--CCCCCeEEEeccCHHHHH
Q psy17834 243 ISDR---AISMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVDVVH--SKTPNVRMIDTVDSRLLK 317 (325)
Q Consensus 243 ~~~~---~~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~~v~V~~~g~~~~G~tv~d~~~--~~~~~v~v~~~vd~~~f~ 317 (325)
|.+ ...++..++++||++|++++++|++|+ +++.+|+||++|+++||+|++|+.+ ++++|++|++++|.++|+
T Consensus 234 -~~~~~~~~~~~~~g~~lhD~lava~~~~P~~~~-~~~~~v~Ve~~g~~t~G~tv~d~~~~~~~~~n~~v~~~vD~~~f~ 311 (322)
T 1yoe_A 234 -FLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFT-SVERWVGVETQGKYTQGMTVVDYYYLTGNKPNATVMVDVDRQGFV 311 (322)
T ss_dssp -HHC-----CCCCSSEECCTHHHHHHHHCGGGEE-EEEECEEECCSCSSCTTCEEECTTCCSSCCCCEEEEEEECHHHHH
T ss_pred -HHHHHhhcccCCCCCccccHHHhhheecccceE-EEEEEEEEEeCCCCCCceEEEeccccCCCCCCeEEEeecCHHHHH
Confidence 221 113455678899999999999999995 7899999999999999999999864 345899999999999999
Q ss_pred HHHhhhh
Q psy17834 318 DMLLWIK 324 (325)
Q Consensus 318 ~~l~~~~ 324 (325)
++|.+++
T Consensus 312 ~~~~~~l 318 (322)
T 1yoe_A 312 DLLADRL 318 (322)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 4
>2mas_A Inosine-uridine nucleoside N-ribohydrolase; purine nucleoside hydrolase, IU-NH, purine nucleosidase; HET: PIR; 2.30A {Crithidia fasciculata} SCOP: c.70.1.1 PDB: 1mas_A* 1ezr_A
Probab=100.00 E-value=5.7e-77 Score=557.93 Aligned_cols=301 Identities=27% Similarity=0.354 Sum_probs=264.6
Q ss_pred ceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCccCc
Q psy17834 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVYKGVSKPLIPKDLSHK 85 (325)
Q Consensus 6 ~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~~G~~~pl~~~~~~~~ 85 (325)
+|||||||+|+||++||+|||++|+ +||+|||+++||++++++++|++++|+++|+.+||||+|+.+||.++...
T Consensus 2 ~~vIiDtD~GiDDa~AL~~al~~p~---i~l~gIt~v~GN~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~~~-- 76 (314)
T 2mas_A 2 KKIILDCDPGLDDAVAILLAHGNPE---IELLAITTVVGNQTLAKVTRNAQLVADIAGITGVPIAAGCDKPLVRKIMT-- 76 (314)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHCTT---EEEEEEEECSSSSCHHHHHHHHHHHHHHTTCCSCCEEECCSSCSSSCCCC--
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC---CEEEEEEEccCCcCHHHHHHHHHHHHHHhCCCCCCEEeCCCcccCCCCCC--
Confidence 6899999999999999999999998 99999999999999999999999999999999999999999999876433
Q ss_pred cccccccccCCCCCCCCCCCCCCCcccccCCCCCcHHHHHHHHHHh-CCCcEEEEEccchHHHHHHHHHCcchhhccCcE
Q psy17834 86 YSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVALHELTRE-FKGLISVLCLAPLTNIALTLRLFPQFAQNAKEL 164 (325)
Q Consensus 86 ~a~~~~~~hG~dglg~~~~~~p~~~~~~~~~~~~~a~~~l~~~~~~-~~~~vtiv~iGpLTNiA~al~~~P~~~~~i~~i 164 (325)
+ ..+||.+|||+..+ | .+.....+.+ +|+++|++++++ +|++||||++|||||||+||+++|++++|||+|
T Consensus 77 -a---~~~hG~~Glg~~~~--p-~~~~~~~~~~-~A~~~i~~~~~~~~~~~vtiva~GPLTNlA~al~~~P~i~~~i~~i 148 (314)
T 2mas_A 77 -A---GHIHGESGMGTVAY--P-AEFKNKVDER-HAVNLIIDLVMSHEPKTITLVPTGGLTNIAMAARLEPRIVDRVKEV 148 (314)
T ss_dssp -C---HHHHCSSSSTTCCC--C-SSCSSCBCSS-CHHHHHHHHHHHSCTTCEEEEECSCSHHHHHHHHHCTHHHHHSCEE
T ss_pred -c---cccCCCCCCCCCCC--C-CccccccCCc-cHHHHHHHHHHhhCCCCEEEEEeccHHHHHHHHHHChhHHhhCCEE
Confidence 2 67999999998776 5 2332114454 999999999999 999999999999999999999999999999999
Q ss_pred EEecCcccCCCCCCccccccCCCCHHHHHHHHhcCCCCeEEecCCccccccCChHHHHHHhCCCChHHHHHHHHHHHHHh
Q psy17834 165 YIMGGNHKGVGNVTSAAEFNFLTDPEAAHIVLGGFHGPICILPWEACLGIDISYEWRYDTLGASDAPYISLLNRLERGIS 244 (325)
Q Consensus 165 viMGG~~~~~GN~~~~aE~N~~~DPeAA~~Vl~s~g~~i~~vpld~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (325)
|||||++ ..||++|.||||||+|||||++||++ +.|++|+|||+|++..++.++. +++...+++..+++.+++.. |
T Consensus 149 viMGG~~-~~GN~tp~aEfN~~~DPeAA~~V~~s-~~~i~~v~ldvt~~~~~t~~~~-~~l~~~~~~~~~~~~~~~~~-~ 224 (314)
T 2mas_A 149 VLMGGGY-HEGNATSVAEFNIIIDPEAAHIVFNE-SWQVTMVGLDLTHQALATPPIL-QRVKEVDTNPARFMLEIMDY-Y 224 (314)
T ss_dssp EEECCCS-SCCSSSSSCCHHHHTCHHHHHHHHHS-SSCEEEECHHHHTTCEECHHHH-HHHHTTCSHHHHHHHHHHHH-H
T ss_pred EEeCCcc-cCCCCCchhHHHhhcCHHHHHHHHhC-CCCEEEeChhhhcccccCHHHH-HHHHhcCChHHHHHHHHHHH-H
Confidence 9999999 57999999999999999999999997 9999999999999999998764 55666677877777766543 2
Q ss_pred hhh--hhcCCCCCCCCcHHHHHHHhcCCceeeEEEeeEEEEeeCCcccceEEEecCC--CCCCCeEEEeccCHHHHHHHH
Q psy17834 245 DRA--ISMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVDVVH--SKTPNVRMIDTVDSRLLKDML 320 (325)
Q Consensus 245 ~~~--~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~~v~V~~~g~~~~G~tv~d~~~--~~~~~v~v~~~vd~~~f~~~l 320 (325)
.+. ..++..++++||++|++++++|++|+ +++.+++|+++|+++||+|+.|+.+ ++++|++|++++|.++|+++|
T Consensus 225 ~~~~~~~~g~~~~~lhD~lava~~~~p~~~~-~~~~~v~Ve~~g~~t~G~tv~d~~~~~~~~~~~~v~~~vD~~~f~~~~ 303 (314)
T 2mas_A 225 TKIYQSNRYMAAAAVHDPCAVAYVIDPSVMT-TERVPVDIELTGKLTLGMTVADFRNPRPEHCHTQVAVKLDFEKFWGLV 303 (314)
T ss_dssp HHHHHSTTCCSSEECCHHHHHHHHHCGGGEE-EEECCEEECSSCSSCTTCEEECCCSSCCSSCSEEEEEEECHHHHHHHH
T ss_pred HHHHHhccCCCCCcCCcHHHHHHHcChhheE-EEEEeEEEEeCCCCCCceEEEeccccCCCCCCEEEEeecCHHHHHHHH
Confidence 221 12355678899999999999999995 8899999999998999999999864 345799999999999999999
Q ss_pred hhhh
Q psy17834 321 LWIK 324 (325)
Q Consensus 321 ~~~~ 324 (325)
.+++
T Consensus 304 ~~~l 307 (314)
T 2mas_A 304 LDAL 307 (314)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 5
>3fz0_A Nucleoside hydrolase, putative; NH fold, open alpha/beta structure, glycosidase; HET: BTB; 2.50A {Trypanosoma brucei}
Probab=100.00 E-value=8.7e-77 Score=562.61 Aligned_cols=306 Identities=28% Similarity=0.472 Sum_probs=257.7
Q ss_pred CCCceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCc
Q psy17834 3 IYPRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVYKGVSKPLIPKDL 82 (325)
Q Consensus 3 ~~~~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~~G~~~pl~~~~~ 82 (325)
|+++|||||||+|+||++||+|||++|+ ++|+|||+++||++++++++|++++|+++|+ +||||+|+.+||.++ .
T Consensus 4 m~~~kvIiD~D~G~DDa~Al~~al~~p~---i~l~gIt~v~GN~~~~~~~~na~~ll~~~g~-dIPV~~Ga~~pl~~~-~ 78 (360)
T 3fz0_A 4 MVHRKLIIDTDCGGDDAIAIMLAMTQPD---VEVIAITVVWGNVEVNQGMENIGKLLDLYDA-DIPFFRGAEGPLVGE-R 78 (360)
T ss_dssp -CEEEEEEEECCCHHHHHHHHHHHTSTT---EEEEEEEECCSSSCHHHHHHHHHHHHHHHTC-CCCEEECCSSCSSSS-C
T ss_pred CCCceEEEECCCChHHHHHHHHHHhCCC---CEEEEEEEecCCCCHHHHHHHHHHHHHHcCC-CCCEEEcCCCCCCCC-c
Confidence 5678999999999999999999999998 9999999999999999999999999999999 999999999999887 2
Q ss_pred cCccccccccc--cCCCCCCCCCCCCCCCcccccCCCCCcHHHHHHHHHHhC-CCc---EEEEEccchHHHHHHHHHCcc
Q psy17834 83 SHKYSFDWLHF--FGKNGFGDIDLGDSDTLDRSCHVENISAVVALHELTREF-KGL---ISVLCLAPLTNIALTLRLFPQ 156 (325)
Q Consensus 83 ~~~~a~~~~~~--hG~dglg~~~~~~p~~~~~~~~~~~~~a~~~l~~~~~~~-~~~---vtiv~iGpLTNiA~al~~~P~ 156 (325)
. + ..+ ||.+|||+..+ |..+.....+.+ +|+++|+++++++ |++ ||||++|||||||+||+++|+
T Consensus 79 ~---~---~~~~~hG~~Glg~~~~--p~~~~~~~~~~~-~A~~~i~~~~~~~~p~~~~~vtiva~GPLTNlA~al~~~P~ 149 (360)
T 3fz0_A 79 E---T---VQWGGFGSDGFGDAGF--PPSQRVALQPKR-HAALEILKILEEAEPSDDVVYQLVALGPLTNVALALRLNPD 149 (360)
T ss_dssp C---S---CCCCTTCTTSSCSCCC--CCCSHHHHSCCS-CHHHHHHHHHHHCCCCSSEEEEEEECSCSHHHHHHHHHCGG
T ss_pred c---h---HHHHhhcccCcCcccC--CCCccccccCCc-cHHHHHHHHHHhcCCCCCceEEEEEecChHHHHHHHHhChH
Confidence 2 2 678 99999999876 422221124455 9999999999999 888 999999999999999999999
Q ss_pred hhhcc-----CcEEEecCcccCCCCCCccccccCCCCHHHHHHHHhcC--CCCeEEecCCccccccCChHHHHHHhCCCC
Q psy17834 157 FAQNA-----KELYIMGGNHKGVGNVTSAAEFNFLTDPEAAHIVLGGF--HGPICILPWEACLGIDISYEWRYDTLGASD 229 (325)
Q Consensus 157 ~~~~i-----~~iviMGG~~~~~GN~~~~aE~N~~~DPeAA~~Vl~s~--g~~i~~vpld~t~~~~~~~~~~~~~~~~~~ 229 (325)
+.++| ++||||||++...||++|.+|||||+|||||++||+++ ++|++|+|||+|++..++.++. +++...+
T Consensus 150 ~~~~ig~~kv~~iviMGG~~~~~GN~tp~aEfN~~~DPeAA~~V~~s~g~~~~i~~v~ldvt~~~~~t~~~~-~~~~~~~ 228 (360)
T 3fz0_A 150 LFSKLGTDTIPGIVIMNGTSESKGNSNMAAEFNSHCDPEAGVVVLQHKGWKCPVQLVNWEVTVNSPMTWGFY-DKLVNRE 228 (360)
T ss_dssp GGGGSSCSSSCSEEEECCCSSCCCSSSSSCCHHHHHCHHHHHHHHHCSCCSSCEEEECHHHHHTSCEEHHHH-HHHTTC-
T ss_pred HHhhhccccCcEEEEECCCccCCCCCCCCcccccCcCHHHHHHHHhCcCCCCCeEEECccceeeeecCHHHH-HHHHhcC
Confidence 99999 99999999998889999999999999999999999973 4599999999999999998764 4454333
Q ss_pred hH-HH----------HHHHHHHHHHhhhhh--h-------------cCCCCCCCCcHHHHHHHhcCCceeeEEEeeEEEE
Q psy17834 230 AP-YI----------SLLNRLERGISDRAI--S-------------MGFNKWVPADSALCTCFLDEKAITVSYETTCSVE 283 (325)
Q Consensus 230 ~~-~~----------~~~~~~~~~~~~~~~--~-------------~~~~~~~~~D~la~a~~~~P~~~~~~~~~~v~V~ 283 (325)
++ .+ +++.++++. |.++. . .+..++++||++|++++++|++|+++++++|+||
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~~g~~~~~g~~~~~lHD~lava~~l~P~l~~~~~~~~V~Ve 307 (360)
T 3fz0_A 229 STPNGRVAVNQNKWQEFIEKLFQR-LEAFTRIHDDGTRADTGDAEATQDVTCVVPDAVAVLVAIRPESVLDSFLTYVTVE 307 (360)
T ss_dssp ----------CCHHHHHHHHHHHH-HHHHHC------------------CEECCHHHHHHHHHHCGGGEEEEEEECEEEC
T ss_pred CCcccccccccchHHHHHHHHHHH-HHHHHhhhccccccccccccccCcCCCccccHHHHHHHhChhheeeEEEEEEEEE
Confidence 33 33 666655442 22110 0 2233467899999999999999976789999999
Q ss_pred eeCCcccceEEEecCCC--CC------CCeEEEeccCHHHHHHHHhhhh
Q psy17834 284 LAGEITRGQACVDVVHS--KT------PNVRMIDTVDSRLLKDMLLWIK 324 (325)
Q Consensus 284 ~~g~~~~G~tv~d~~~~--~~------~~v~v~~~vd~~~f~~~l~~~~ 324 (325)
++|.++||+|++|+++. ++ +|++|++++|.++|+++|.+++
T Consensus 308 ~~g~~trG~Tv~D~~~~~~~~~~~~~~~n~~V~~~vD~~~f~~~~~~~l 356 (360)
T 3fz0_A 308 LHGRETRGATCIDWYGTEQSMAKKGRWRNCNVITKVDNEMFLKALRDIV 356 (360)
T ss_dssp SSCSSCTTCEEECSSCCHHHHHHTTCCCCEEEEEEECHHHHHHHHHHHH
T ss_pred eCCCCcceEEEeccccccCcccccCCCCCeEEeEecCHHHHHHHHHHHh
Confidence 99999999999998751 22 8999999999999999999875
No 6
>3t8i_A Purine nucleosidase, (IUNH-2); purine nucleoside hydrolase, thermostable protein, open (ALP structure, rossmann fold, NH-fold; 1.80A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.1e-76 Score=550.01 Aligned_cols=298 Identities=28% Similarity=0.441 Sum_probs=258.0
Q ss_pred ceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCccCc
Q psy17834 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVYKGVSKPLIPKDLSHK 85 (325)
Q Consensus 6 ~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~~G~~~pl~~~~~~~~ 85 (325)
+|||||||+|+||++||++|+. + +||+|||+++||++++++++|++++|+.+|+.+||||+|+.+||.++...
T Consensus 2 ~kvIiD~D~G~DDa~Allla~~--~---~~l~gIt~v~GN~~~~~~~~na~~~l~~~g~~diPV~~Ga~~pl~~~~~~-- 74 (306)
T 3t8i_A 2 RKVIVDSDTATDDTIAILLASR--F---FQLLGVTIVAGNVNYNQEVKNALFTLEYIGKQDVPVYLGSQRPILGNWRT-- 74 (306)
T ss_dssp CEEEEEECCSTHHHHHHHHHHH--H---SEEEEEEECSSSSCHHHHHHHHHHHHHHTTCTTSCEEECCSSCTTCCCCC--
T ss_pred cEEEEECCCChHHHHHHHHhCC--C---CEEEEEEEccCCCCHHHHHHHHHHHHHhcCCCCCcEEEcCCccCCCCCcc--
Confidence 6999999999999999976653 5 99999999999999999999999999999999999999999999876432
Q ss_pred cccccccccCCCCCCCCCCCCCCCcccccCCCCCcHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCcchhhccCcEE
Q psy17834 86 YSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELY 165 (325)
Q Consensus 86 ~a~~~~~~hG~dglg~~~~~~p~~~~~~~~~~~~~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~~~~~i~~iv 165 (325)
+ ..+||.+|||+..+ | .+.. ..+++ +|+++|+++++++|++||||++|||||||+||+++|+++++||+||
T Consensus 75 -~---~~~hG~~Glg~~~~--p-~~~~-~~~~~-~A~~~i~~~~~~~~~~vtiva~GpLTNlA~al~~~P~i~~~i~~iv 145 (306)
T 3t8i_A 75 -V---EEVHGSNGMSNWNY--P-EPNK-RPEKE-HAIDAILRLSKEHEGELEILAISPLTNIALAYLKDPSVVKRVKKIW 145 (306)
T ss_dssp -C---HHHHCTTSSTTCCC--C-CCSC-CCCSS-CHHHHHHHHHHHTTTTEEEEECSCSHHHHHHHHHCGGGGGTCCEEE
T ss_pred -c---ccccCCCCCCccCC--C-CccC-CcCCc-cHHHHHHHHHHhCCCCEEEEEecChHHHHHHHHHChhHHhhcCEEE
Confidence 2 68999999999876 4 2332 24555 9999999999999999999999999999999999999999999999
Q ss_pred EecCcccCCCCCCccccccCCCCHHHHHHHHhcCCCCeEEecCCccccc-cCChHHHHHHhCCCChHHHHHHHHHHHHHh
Q psy17834 166 IMGGNHKGVGNVTSAAEFNFLTDPEAAHIVLGGFHGPICILPWEACLGI-DISYEWRYDTLGASDAPYISLLNRLERGIS 244 (325)
Q Consensus 166 iMGG~~~~~GN~~~~aE~N~~~DPeAA~~Vl~s~g~~i~~vpld~t~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (325)
||||++ ..||++|.+|||||+|||||++||++ +.|++|+|||+|++. .++.+. .+++.+.+++.++++.++.+. |
T Consensus 146 iMGG~~-~~GN~tp~aEfN~~~DPeAA~~V~~s-~~~i~~v~ldvt~~~~~~t~~~-~~~l~~~~~~~~~~~~~~~~~-y 221 (306)
T 3t8i_A 146 IMGGAF-SKGNTTPIAEFNFWVDPEAAKIVLDA-GFDITIVPWEVAEISGSLNERD-WEYISKLNTKLSNFFINVNKT-L 221 (306)
T ss_dssp EECCCS-SCCSSSSSCCHHHHHCHHHHHHHHHT-TCCEEEECHHHHHHHSEEEHHH-HHHHHHHCCHHHHHHHHHTHH-H
T ss_pred EecCCC-CCCCCCCchhhccccCHHHHHHHHhC-CCCceEecchhccccccCCHHH-HHHHHhhCChHHHHHHHHHHH-H
Confidence 999996 68999999999999999999999997 999999999999987 787754 345544456677776654332 2
Q ss_pred hhh--hhcCCCCCCCCcHHHHHHHhcCCceeeEEEeeEEEEeeCCcccceEEEecCC--CCCCCeEEEeccCHHHHHHHH
Q psy17834 245 DRA--ISMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVDVVH--SKTPNVRMIDTVDSRLLKDML 320 (325)
Q Consensus 245 ~~~--~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~~v~V~~~g~~~~G~tv~d~~~--~~~~~v~v~~~vd~~~f~~~l 320 (325)
..+ ..++..++++||++|++++++|++++++++.+|+||++|. +||+|+.|+++ ++++|++|++++|.++|+++|
T Consensus 222 ~~~~~~~~g~~g~~~hD~lava~~l~P~l~~~~~~~~v~Ve~~g~-t~G~tv~D~~~~~~~~~n~~V~~~vD~~~f~~~~ 300 (306)
T 3t8i_A 222 KEYTTKNQGISGSIHPDSLTVSIAHDNSIILDSSLKYVDVELCSK-SRGAMLIDWYSLHKNKPNAEIVLKADGGKFKNLL 300 (306)
T ss_dssp HHHHHHHHSSSEEECHHHHHHHHHHCGGGEEEEEEECEEECCSGG-GTTCEEECTTCCSSCCCCEEEEEEECHHHHHHHH
T ss_pred HHHHHhhcCCCCCcCCCHHHhhhhccccceeEEEEEEEEEEECCC-CCeeEEecccccCCCCCCeEEEeccCHHHHHHHH
Confidence 211 2346678889999999999999987667899999999998 99999999875 446899999999999999999
Q ss_pred hhhh
Q psy17834 321 LWIK 324 (325)
Q Consensus 321 ~~~~ 324 (325)
.+++
T Consensus 301 ~~~l 304 (306)
T 3t8i_A 301 FNSL 304 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9874
No 7
>2c40_A Inosine-uridine preferring nucleoside hydrolase F protein; spine; 2.2A {Bacillus anthracis}
Probab=100.00 E-value=2e-72 Score=527.20 Aligned_cols=298 Identities=19% Similarity=0.209 Sum_probs=247.3
Q ss_pred CceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCccC
Q psy17834 5 PRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVYKGVSKPLIPKDLSH 84 (325)
Q Consensus 5 ~~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~~G~~~pl~~~~~~~ 84 (325)
++|||||||+|+||++||+|||++|+ +||+|||+++||++++++++|++++|+++|+++||||+|+.+||.+....
T Consensus 1 m~kvIiDtD~GiDDa~Al~~al~~p~---i~l~gIt~v~GN~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~~~- 76 (312)
T 2c40_A 1 MKKVYFNHDGGVDDLVSLFLLLQMDN---VELTGVSVIPADCYLEPAMSASRKIIDRFGKNTIEVAASNSRGKNPFPKD- 76 (312)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTCTT---EEEEEEEECSSSSCHHHHHHHHHHHHHHHCCSCCCEEECCCCCSSCCCHH-
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCC---CEEEEEEEecCCCcHHHHHHHHHHHHHHcCCCCCCEecCCCccccCCCcc-
Confidence 36899999999999999999999998 99999999999999999999999999999999999999999999653211
Q ss_pred ccccccccccCC--CCCCCCCCCCCCCcccccCCCCCcHHHHHHHHHHhCCCcEEEEEccchHHHHHHHHHCcchhhccC
Q psy17834 85 KYSFDWLHFFGK--NGFGDIDLGDSDTLDRSCHVENISAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAK 162 (325)
Q Consensus 85 ~~a~~~~~~hG~--dglg~~~~~~p~~~~~~~~~~~~~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~al~~~P~~~~~i~ 162 (325)
...||. +|++.... | .+...+.+.+ +|+++|+++++++|++||||++|||||||+||+++|+++++||
T Consensus 77 ------~~~~~~~~~g~~~~~~--~-~~~~~~~~~~-~A~~~i~~~~~~~~~~vtiva~GPLTNlA~al~~~P~i~~~i~ 146 (312)
T 2c40_A 77 ------WRMHAFYVDALPILNE--S-GKVVTHVAAK-PAHHHLIETLLQTEEKTTLLFTGPLTDLARALYEAPIIENKIK 146 (312)
T ss_dssp ------HHTHHHHHHTCHHHHT--T-SCCCSCBCSS-CHHHHHHHHHHHSSSCEEEEESSCSHHHHHHHHHCGGGGGGEE
T ss_pred ------cccccccCCCcccCCC--C-CcccCCCCCc-cHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHChhHHhhcC
Confidence 334553 55542222 2 1111123454 9999999999999999999999999999999999999999999
Q ss_pred cEEEecCcccCCCCCC-----ccccccCCCCHHHHHHHHhcCCCCeEEecCCccccccCChHHHHHHhCCCC-hHHHHHH
Q psy17834 163 ELYIMGGNHKGVGNVT-----SAAEFNFLTDPEAAHIVLGGFHGPICILPWEACLGIDISYEWRYDTLGASD-APYISLL 236 (325)
Q Consensus 163 ~iviMGG~~~~~GN~~-----~~aE~N~~~DPeAA~~Vl~s~g~~i~~vpld~t~~~~~~~~~~~~~~~~~~-~~~~~~~ 236 (325)
+||||||++...||++ |.||||||+|||||++||++ +.|++|+|||+|++..++.++. +++.+.+ ++..+++
T Consensus 147 ~iviMGGa~~~~GN~t~p~~~p~aEfN~~~DPeAA~~V~~s-~~~i~~v~ldvt~~~~~t~~~~-~~l~~~~~~~~~~~~ 224 (312)
T 2c40_A 147 RLVWMGGTFRTAGNVHEPEHDGTAEWNSFWDPEAVARVWEA-NIEIDLITLESTNQVPLTIDIR-EQWAKERKYIGIDFL 224 (312)
T ss_dssp EEEEECCCCSSCCSCCCTTCCSCCCHHHHHCHHHHHHHHHS-SCCEEEECGGGGTTCBCCHHHH-HHHHHTTTSHHHHHH
T ss_pred EEEEeCCcccCCCCccCCCCCCcchhhhccCHHHHHHHHcC-CCCEEEEccccccceecCHHHH-HHHHhcCCChHHHHH
Confidence 9999999998789998 89999999999999999997 9999999999999999998764 4554333 5777777
Q ss_pred HHHHHHHhhhh-hhcCCCCCCCCcHHHHHHHhcCCceeeEEEeeEEEEeeCCcccceEEEecCCCCCCCeEEEeccCHHH
Q psy17834 237 NRLERGISDRA-ISMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVDVVHSKTPNVRMIDTVDSRL 315 (325)
Q Consensus 237 ~~~~~~~~~~~-~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~~v~V~~~g~~~~G~tv~d~~~~~~~~v~v~~~vd~~~ 315 (325)
.+.+.. +... ...+..++++||++|++++++|++|+ +++.+++|+++| .+||+|+.|+.+ ++++|++++|.++
T Consensus 225 ~~~~~~-~~~~~~~~~~~~~~lhD~lava~~~~p~l~~-~~~~~v~V~~~g-~~~G~tv~d~~~---~~~~v~~~vD~~~ 298 (312)
T 2c40_A 225 GQCYAI-VPPLVHFAKNSTYYLWDVLTAAFVGKADLAK-VQTINSIVHTYG-PSQGRTVETDDG---RPVHVVYDVNHDR 298 (312)
T ss_dssp HHHHHT-SCCC--------CBCHHHHHHHHHHCGGGSE-EEEEEEEECCSS-TTTTCEEEEEEE---EEEEEEECCCHHH
T ss_pred HHHHHh-hhhhhhhcccCCCcccCHHHHHHHcCcccee-eEEEEEEEEeCC-CCCceEEEecCC---CceEEEeecCHHH
Confidence 665442 2100 00123568899999999999999986 789999999986 699999999743 5799999999999
Q ss_pred HHHHHhhhh
Q psy17834 316 LKDMLLWIK 324 (325)
Q Consensus 316 f~~~l~~~~ 324 (325)
|+++|.+++
T Consensus 299 f~~~~~~~l 307 (312)
T 2c40_A 299 FFDYITRLA 307 (312)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 8
>3epw_A IAG-nucleoside hydrolase; rossmann fold, active site loops, aromatic stacking; HET: JMQ; 1.30A {Trypanosoma vivax} SCOP: c.70.1.1 PDB: 3epx_A* 1hoz_A 1hp0_A* 2ff1_A* 2ff2_A* 1kic_A* 1kie_A* 1r4f_A* 3b9g_A*
Probab=100.00 E-value=9.4e-73 Score=533.42 Aligned_cols=305 Identities=16% Similarity=0.228 Sum_probs=253.1
Q ss_pred CCCceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCC----CCcccCCCCCCC
Q psy17834 3 IYPRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKN----IPVYKGVSKPLI 78 (325)
Q Consensus 3 ~~~~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~----IPV~~G~~~pl~ 78 (325)
.+.+|||||||+|+||++||+|||++|+ .+||+|||||+||++++++++|++++|+++|+.+ ||||+|+.+||.
T Consensus 11 ~~~~~vilD~DpGiDDa~AL~~al~~p~--~iel~gITtv~GN~~~~~~~~Nal~lL~~~g~~d~~~~IPV~~Ga~~pl~ 88 (338)
T 3epw_A 11 GSAKNVVLDHDGNLDDFVAMVLLASNTE--KVRLIGALCTDADCFVENGFNVTGKIMCLMHNNMNLPLFPIGKSAATAVN 88 (338)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHHCTT--TEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCSS
T ss_pred CccceEEEECCCChHHHHHHHHHHhCCC--CeEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCCccceEeCCCCCCC
Confidence 3568999999999999999999999995 4999999999999999999999999999999988 999999999987
Q ss_pred CCCccCccccccccccCCCCCCCCCCCCCCCc--------ccccCCCCCcHHHHHHHHHHhCCCcEEEEEccchHHHHHH
Q psy17834 79 PKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTL--------DRSCHVENISAVVALHELTREFKGLISVLCLAPLTNIALT 150 (325)
Q Consensus 79 ~~~~~~~~a~~~~~~hG~dglg~~~~~~p~~~--------~~~~~~~~~~a~~~l~~~~~~~~~~vtiv~iGpLTNiA~a 150 (325)
..... ..+||. |+++.... + .+ ...+.+++ +|+++|+++++++|++||||++|||||||+|
T Consensus 89 ~~~~~-------~~~~~~-~~~~~~~~-~-~~g~~~l~~~~~~~~~~~-~A~~~i~~~~~~~~~~vtiva~GpLTNlA~a 157 (338)
T 3epw_A 89 PFPKE-------WRCLAK-NMDDMPIL-N-IPENVELWDKIKAENEKY-EGQQLLADLVMNSEEKVTICVTGPLSNVAWC 157 (338)
T ss_dssp CCCHH-------HHTHHH-HHHTCGGG-C-CHHHHHHHHHHHHHHHTS-BHHHHHHHHHHHCSSCEEEEECSCTHHHHHH
T ss_pred CCCCc-------ceeccC-cCCCCccC-C-cccccccCCCCCCccCCc-cHHHHHHHHHHhCCCceEEEECCCchHHHHH
Confidence 53211 234543 23222110 1 11 01123454 9999999999999999999999999999999
Q ss_pred HHHC-cchhhccCcEEEecCcccCCCCCC-----ccccccCCCCHHHHHHHHhcCCCCeEEecCCccccccCChHHHHHH
Q psy17834 151 LRLF-PQFAQNAKELYIMGGNHKGVGNVT-----SAAEFNFLTDPEAAHIVLGGFHGPICILPWEACLGIDISYEWRYDT 224 (325)
Q Consensus 151 l~~~-P~~~~~i~~iviMGG~~~~~GN~~-----~~aE~N~~~DPeAA~~Vl~s~g~~i~~vpld~t~~~~~~~~~~~~~ 224 (325)
|+++ |++.+|||+||||||++..+||++ |.+|||||+|||||++||+.+++|++|+|||+|++..++.++. ++
T Consensus 158 l~~~gP~~~~~i~~iviMGG~~~~~GN~t~~~~~~~aEfN~~~DPeAA~~V~~~sg~~i~~vpLdvT~~~~~t~~~~-~~ 236 (338)
T 3epw_A 158 IDKYGEKFTSKVEECVIMGGAVDVRGNVFLPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPVRSPYV-QR 236 (338)
T ss_dssp HHHHTHHHHTTEEEEEEECCCSSSCCSCCCTTSCSCCCHHHHHSHHHHHHHHTCTTCCEEEECHHHHTTCBCCHHHH-HG
T ss_pred HHHcCHHHHHhCCEEEEecCCCCCCCCccccCCCCcchhccccCHHHHHHHHhhcCCCEEEeCcccccCccCCHHHH-HH
Confidence 9999 999999999999999998889998 7999999999999999999339999999999999999998764 55
Q ss_pred hCCC-ChHHHHHHHHHHHHHhhhhh-hcCCCCCCCCcHHHHHHHhcCCceeeEEEeeEEEEeeCCcccceEEEecCCCCC
Q psy17834 225 LGAS-DAPYISLLNRLERGISDRAI-SMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVDVVHSKT 302 (325)
Q Consensus 225 ~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~la~a~~~~P~~~~~~~~~~v~V~~~g~~~~G~tv~d~~~~~~ 302 (325)
+.+. ++++.+++.+++.. +..+. ..+..++++||++|++++++|++|+ +++.+|+|+++++++||+|++|+.+ ++
T Consensus 237 l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lhDplAva~~l~P~l~~-~~~~~v~Ve~~~g~t~G~Tv~d~~~-~~ 313 (338)
T 3epw_A 237 FGEQTNFLLSILVGTMWAM-CTHCELLRDGDGYYAWDALTAAYVVDQKVAN-VDPVPIDVVVDKQPNEGATVRTDAE-NY 313 (338)
T ss_dssp GGGGTTSHHHHHHHHHHHT-TTTHHHHSTTCCCBCHHHHHHHHHHCGGGCE-EEEEEEEECCSSSTTTTCEEECCCT-TC
T ss_pred HHhhCCCHHHHHHHHHHHH-HHHHHhhccCCCCcCchHHHHHHHcCccceE-EEEEEEEEEeCCCCCCceEEEecCC-CC
Confidence 6543 35788887766542 21111 1234678999999999999999996 7899999999777899999999864 45
Q ss_pred CCeEEEeccCHHHHHHHHhhhh
Q psy17834 303 PNVRMIDTVDSRLLKDMLLWIK 324 (325)
Q Consensus 303 ~~v~v~~~vd~~~f~~~l~~~~ 324 (325)
+|++|++++|.++|+++|++++
T Consensus 314 ~n~~V~~~vD~~~F~~~~~~~l 335 (338)
T 3epw_A 314 PLTFVARNPEAEFFLDMLLRSA 335 (338)
T ss_dssp CEEEEEESCCHHHHHHHHHHHT
T ss_pred CceEEeeccCHHHHHHHHHHHH
Confidence 8999999999999999999876
No 9
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Probab=99.12 E-value=4.5e-10 Score=107.58 Aligned_cols=138 Identities=16% Similarity=0.268 Sum_probs=91.1
Q ss_pred CCceEEEeCCCC--chHHHHHHHHHhCCCCCceEEEEEEeecC----C-CC---HHHHHHHHHHHHHHhCCC--CCCccc
Q psy17834 4 YPRKVILDVDAG--IDDAWALLLMLKAEQKNLIEIIAITCCHG----N-AE---LSEVVDNVCRVLQAFGRK--NIPVYK 71 (325)
Q Consensus 4 ~~~kvIiDtD~G--~DDa~Al~~al~~~~~~~i~l~gVt~v~G----n-~~---~~~~~~n~~~~l~~~g~~--~IPV~~ 71 (325)
.|.+|||+||.+ +||.++|+.+|..++ .++|.||+.+.. + .. .+...+.-.+++..++.. ..|...
T Consensus 27 ~k~RviI~TDi~nEpDD~~Slvr~Llysn--~~dieGivat~s~~~~~~~~~~~i~~ii~aY~~v~~nL~~h~~~yP~~~ 104 (437)
T 2yhg_A 27 GRYRVIHTTDMGADPDDEQSLVRQLVMAN--EYDLEGIITTTGCWKKSTSNTAYVDRILNAYSQAYPNLSKHAEGFPTPA 104 (437)
T ss_dssp CCCEEEEEECTTSCTHHHHHHHHHHHTGG--GSEEEEEEECCBTTBCCCCCCHHHHHHHHHHHHHHHHHTTTSTTCCCHH
T ss_pred CCceEEEeCCCCCCCccHHHHHHHHhCcc--cceEeEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCHH
Confidence 578999999976 899999999999874 499999987763 2 21 232222223344444432 233300
Q ss_pred CCCCCCCCCCccCccccccccccCCCC--CCCCCCCCCCCcccccCCCCCcHHHHHHHHHHhC-CCcEEEEEccchHHHH
Q psy17834 72 GVSKPLIPKDLSHKYSFDWLHFFGKNG--FGDIDLGDSDTLDRSCHVENISAVVALHELTREF-KGLISVLCLAPLTNIA 148 (325)
Q Consensus 72 G~~~pl~~~~~~~~~a~~~~~~hG~dg--lg~~~~~~p~~~~~~~~~~~~~a~~~l~~~~~~~-~~~vtiv~iGpLTNiA 148 (325)
.. ...-..|... |..... .. .. +|.++|++.+++. +.+|.|++.|.+|+||
T Consensus 105 ----------~L-----rs~v~~G~~~ygm~~~g~---------~~-~s-~gs~~Ii~~~~~~d~rPL~i~~wGG~n~lA 158 (437)
T 2yhg_A 105 ----------YL-----DSINVMGQRGYGMGDVGS---------GK-DS-AGSNLIIAAVDKDDPRPVWATCWGGCNTIA 158 (437)
T ss_dssp ----------HH-----HHTEEECCSSCGGGGCST---------TC-CC-HHHHHHHHHHHSSCSSCEEEEESSCSHHHH
T ss_pred ----------Hh-----hhhhccCCcccCCCcCCC---------CC-CC-hHHHHHHHHHhCCCCCceEEEEecCHhHHH
Confidence 00 0011122221 111110 11 22 8999999998765 5899999999999999
Q ss_pred HHHHHC---------cchhhccCcEEEecCc
Q psy17834 149 LTLRLF---------PQFAQNAKELYIMGGN 170 (325)
Q Consensus 149 ~al~~~---------P~~~~~i~~iviMGG~ 170 (325)
.||.+. |+|.+||+ ||+.||-
T Consensus 159 qAL~~~~~~~~~~~~~~i~~klr-vy~Ig~q 188 (437)
T 2yhg_A 159 QAVWKVQNTRSQAQLDAFISKLR-VYDILGQ 188 (437)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTEE-EEEESCC
T ss_pred HHHHHhhhhcCcchhHHHhhcEE-EEEecCc
Confidence 999999 99999996 9999985
No 10
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=60.50 E-value=30 Score=32.11 Aligned_cols=63 Identities=17% Similarity=0.264 Sum_probs=45.2
Q ss_pred CCCCCceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCC-------HHHHHHHHHHHHHHhCCCCCCcc
Q psy17834 1 MSIYPRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAE-------LSEVVDNVCRVLQAFGRKNIPVY 70 (325)
Q Consensus 1 ~~~~~~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~-------~~~~~~n~~~~l~~~g~~~IPV~ 70 (325)
|.....||++=.=.|+|=.+++.++... . .+|.||+...+... .+...+.++++.+.+| ||.+
T Consensus 13 ~~~~~~kVvVa~SGGvDSsv~a~lL~~~-G---~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LG---Ip~~ 82 (380)
T 2der_A 13 MSETAKKVIVGMSGGVDSSVSAWLLQQQ-G---YQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLG---IELH 82 (380)
T ss_dssp ----CCEEEEECCSCSTTHHHHHHHHTT-C---CEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHT---CCEE
T ss_pred CCCCCCEEEEEEEChHHHHHHHHHHHHc-C---CeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcC---CcEE
Confidence 5556678999999999988877777654 3 89999999876432 3455778888888887 5554
No 11
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=39.33 E-value=75 Score=29.30 Aligned_cols=60 Identities=23% Similarity=0.410 Sum_probs=45.3
Q ss_pred CCceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCC-------CHHHHHHHHHHHHHHhCCCCCCcc
Q psy17834 4 YPRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNA-------ELSEVVDNVCRVLQAFGRKNIPVY 70 (325)
Q Consensus 4 ~~~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~-------~~~~~~~n~~~~l~~~g~~~IPV~ 70 (325)
...||++=.=.|+|=.+++.++.... .++.||+...|.. ..+...+.++++.+.+| ||.+
T Consensus 8 ~~~kVlVa~SGGvDSsv~a~lL~~~G----~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lG---Ip~~ 74 (376)
T 2hma_A 8 SKTRVVVGMSGGVDSSVTALLLKEQG----YDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIG---IPYY 74 (376)
T ss_dssp GGSEEEEECCSSHHHHHHHHHHHHTT----CEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHT---CCEE
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHHcC----CcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhC---CcEE
Confidence 34689999999999888777776653 8999999988742 23456788888888887 5654
No 12
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=38.77 E-value=74 Score=26.17 Aligned_cols=56 Identities=21% Similarity=0.210 Sum_probs=41.1
Q ss_pred CCceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCC
Q psy17834 4 YPRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGR 64 (325)
Q Consensus 4 ~~~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~ 64 (325)
.+.+|++=-=.|+|=.+++.++.... .++.+++..+|.... ...+.+.++.+.+|.
T Consensus 2 ~~~~v~v~lSGG~DS~~ll~ll~~~~----~~v~~~~~~~~~~~~-~e~~~a~~~a~~lgi 57 (219)
T 3bl5_A 2 KKEKAIVVFSGGQDSTTCLLWALKEF----EEVETVTFHYNQRHS-QEVEVAKSIAEKLGV 57 (219)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHHHC----SEEEEEEEESSCTTC-HHHHHHHHHHHTTCC
T ss_pred CCCCEEEEccCcHHHHHHHHHHHHcC----CceEEEEEeCCCCCH-HHHHHHHHHHHHhCC
Confidence 35689999999999877766665542 679999999986543 346677888777763
No 13
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=33.69 E-value=1.1e+02 Score=25.34 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=38.3
Q ss_pred ceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhC
Q psy17834 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFG 63 (325)
Q Consensus 6 ~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g 63 (325)
.||++=.=.|+|-.+++.++... . .++.+++..+|... ....+.++.+.+|
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~~-g---~~v~~~~v~~~~~~---~~~~~~~~a~~lg 57 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKKL-G---YNPHLITINFGVIP---SYKLAEETAKILG 57 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHT-T---EEEEEEEEECSSSC---TTHHHHHHHHHHT
T ss_pred CeEEEEEECcHHHHHHHHHHHHc-C---CCeEEEEEeCCCch---HHHHHHHHHHHhC
Confidence 68999999999877766555443 3 89999999998765 3456777777776
No 14
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=25.05 E-value=1.9e+02 Score=27.12 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=42.3
Q ss_pred CCCceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCC
Q psy17834 3 IYPRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGR 64 (325)
Q Consensus 3 ~~~~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~ 64 (325)
.++.||++=-=.|+|=.+++.+|... . .+++|+|...|.. .-.+.++++...+|-
T Consensus 12 ~~~~KVVVA~SGGlDSSv~a~~Lke~-G---~eViavt~d~Gq~---~Ele~A~~vA~~lGi 66 (421)
T 1vl2_A 12 HMKEKVVLAYSGGLDTSVILKWLCEK-G---FDVIAYVANVGQK---DDFVAIKEKALKTGA 66 (421)
T ss_dssp --CCEEEEECCSSHHHHHHHHHHHHT-T---CEEEEEEEESSCC---CCHHHHHHHHHHHTC
T ss_pred cccCCEEEEeCCcHHHHHHHHHHHHC-C---CeEEEEEEEcCCH---HHHHHHHHHHHHcCC
Confidence 36789999999999999988888776 4 8999999999963 124566777777874
No 15
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=22.92 E-value=95 Score=30.33 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=46.2
Q ss_pred CceEEEeCCCCchHHHHHHHHHhCCCCCceEEEEEEeecCCCCHHHHHHHHHHHHHHhCCC--CCCcc
Q psy17834 5 PRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRK--NIPVY 70 (325)
Q Consensus 5 ~~kvIiDtD~G~DDa~Al~~al~~~~~~~i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~--~IPV~ 70 (325)
-++++|---.|+|-++++++|...-. .-.|.||+. ++..+.+.+..++..+.+.+|.. .|||-
T Consensus 300 ~~~~vlglSGGiDSal~~~la~~alg--~~~v~~v~m-p~~~ts~~t~~~a~~la~~lg~~~~~i~i~ 364 (565)
T 4f4h_A 300 FPGAIIGLSGGVDSALVLAVAVDALG--AERVRAVMM-PSRYTAGISTTDAADMARRVGVRYDEIAIA 364 (565)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHHC--GGGEEEEEC-CCTTCCHHHHHHHHHHHHHHTCEEEECCCH
T ss_pred CCcEEEecCCCccHHHHHHHHHHHhC--CccEEEEec-cccccccchHHHHHHHHHHhCCceeeeecc
Confidence 46799999999999998888644311 134788873 45445567899999999999964 46663
No 16
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=21.79 E-value=1.4e+02 Score=23.79 Aligned_cols=38 Identities=21% Similarity=0.469 Sum_probs=26.5
Q ss_pred eEEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcccCC
Q psy17834 34 IEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNIPVYKGV 73 (325)
Q Consensus 34 i~l~gVt~v~Gn~~~~~~~~n~~~~l~~~g~~~IPV~~G~ 73 (325)
.+++|+++..+. .........+.|+..|..++||..|-
T Consensus 70 ~diV~lS~~~~~--~~~~~~~~i~~L~~~g~~~i~v~vGG 107 (161)
T 2yxb_A 70 VDVIGVSILNGA--HLHLMKRLMAKLRELGADDIPVVLGG 107 (161)
T ss_dssp CSEEEEEESSSC--HHHHHHHHHHHHHHTTCTTSCEEEEE
T ss_pred CCEEEEEeechh--hHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 779999988663 23445555566667776679998875
No 17
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=20.98 E-value=4.2e+02 Score=23.20 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=42.2
Q ss_pred CCceEEEeCCCCchHHHHHHHHHhCCCCCceE-EEEEEeecCCCC-HHHHHHHHHHHHHHhCCCCCCcc
Q psy17834 4 YPRKVILDVDAGIDDAWALLLMLKAEQKNLIE-IIAITCCHGNAE-LSEVVDNVCRVLQAFGRKNIPVY 70 (325)
Q Consensus 4 ~~~kvIiDtD~G~DDa~Al~~al~~~~~~~i~-l~gVt~v~Gn~~-~~~~~~n~~~~l~~~g~~~IPV~ 70 (325)
...+|++=.-.|.|-...+.++........++ +.+++..+|-.. .+...+.+.++.+.+| ||.+
T Consensus 23 ~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~~s~~~~~~v~~~a~~lg---i~~~ 88 (317)
T 1wy5_A 23 GERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKERN---MKIF 88 (317)
T ss_dssp SCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHT---CCEE
T ss_pred CCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCcccHHHHHHHHHHHHHcC---CcEE
Confidence 34688999988998765555554432111378 999999988642 3455667777777776 5654
Done!