RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17834
(325 letters)
>gnl|CDD|239115 cd02649, nuc_hydro_CeIAG, nuc_hydro_CeIAG: Nucleoside hydrolases
similar to the inosine-adenosine-guanosine-preferring
nucleoside hydrolase from Caenorhabditis elegans.
Nucleoside hydrolases cleave the N-glycosidic bond in
nucleosides generating ribose and the respective base.
These enzymes vary in their substrate specificity. This
group contains eukaryotic, bacterial and archeal
proteins similar to the purine-preferring nucleoside
hydrolase (IAG-NH) from C. elegans and the salivary
purine nucleosidase from Aedes aegypti. C. elegans
IAG-NH exhibits a high affinity for the substrate
analogue p-nitrophenylriboside (p-NPR). .
Length = 306
Score = 313 bits (805), Expect = e-107
Identities = 134/318 (42%), Positives = 177/318 (55%), Gaps = 16/318 (5%)
Query: 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRK 65
RK+I+D D G DDAWALL+ L + +E++AITC HGN + +VV N RVL+A GR+
Sbjct: 1 RKLIIDTDCGGDDAWALLMALASPN---VEVLAITCVHGNTNVEQVVKNALRVLEACGRR 57
Query: 66 NIPVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVAL 125
+IPVY+G SKPL+ +F GK+GFGD+ + ++ AV A+
Sbjct: 58 DIPVYRGASKPLLGP------GPTAAYFHGKDGFGDVGFPEPKDELE---LQKEHAVDAI 108
Query: 126 HELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFNF 185
L RE+ G I+++ L PLTN+AL RL P Q K LYIMGGN +GVGN T AAEFNF
Sbjct: 109 IRLVREYPGEITLVALGPLTNLALAYRLDPSLPQKIKRLYIMGGNREGVGNTTPAAEFNF 168
Query: 186 LTDPEAAHIVLGGFHGPICILPWEACLGIDISYEWRYDTLGASDAPYISLLNRL-ERGIS 244
DPEAAHIVL F PI I+PWE L + +W ++ A+ L R +
Sbjct: 169 HVDPEAAHIVLNSFGCPITIVPWETTL-LAFPLDWEFEDKWANRLEKALFAESLNRREYA 227
Query: 245 DRAISMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVDV--VHSKT 302
+ +G + WVP D+ LD IT VEL GE+TRGQ VD K
Sbjct: 228 FASEGLGGDGWVPCDALAVAAALDPSIITRRLTYAVDVELHGELTRGQMVVDWLGTLKKK 287
Query: 303 PNVRMIDTVDSRLLKDML 320
PN R+I +D K++L
Sbjct: 288 PNARVITKIDREKFKELL 305
>gnl|CDD|216336 pfam01156, IU_nuc_hydro, Inosine-uridine preferring nucleoside
hydrolase.
Length = 304
Score = 236 bits (604), Expect = 1e-76
Identities = 110/316 (34%), Positives = 152/316 (48%), Gaps = 19/316 (6%)
Query: 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRK 65
RKVI+D D GIDDA ALLL L + + ++++ IT GN L + N R+L+ GR
Sbjct: 1 RKVIIDTDPGIDDALALLLALASPE---LDLLGITTVAGNVPLEKTTRNALRLLELLGRD 57
Query: 66 NIPVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVAL 125
+IPVY G ++PL+ G++G G + + H AV AL
Sbjct: 58 DIPVYAGATRPLLRP------LETAPDVHGEDGLGGLPEPEPKPEPEDEH-----AVEAL 106
Query: 126 HELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFNF 185
EL R G ++++ + PLTN+AL LR P+ A+ K + IMGG G GNVT AAEFN
Sbjct: 107 IELLRAAPGEVTLVAIGPLTNLALALRKDPEIAKKIKRIVIMGGAFDGRGNVTPAAEFNI 166
Query: 186 LTDPEAAHIVLGGFHGPICILPWEACLGIDISYEWRYDTLGASDAPYISLLNRLERGISD 245
DPEAA IV PI ++P + ++ + L A P L L R +
Sbjct: 167 YVDPEAAKIVFESG-IPITLVPLDVTRQALLT-PELLERLAAGGTPAGEFLAELLRFYLE 224
Query: 246 RAISMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVDVVHSKTPNV 305
+G D LD + T++ E VE G +TRGQ VD+ K PN
Sbjct: 225 F--YIGSEGRPLHDPLAVAYLLDPELFTLTEEAPVDVETDG-LTRGQTVVDLRGGKPPNA 281
Query: 306 RMIDTVDSRLLKDMLL 321
R+ VD D+LL
Sbjct: 282 RVALDVDVEAFFDLLL 297
>gnl|CDD|224868 COG1957, URH1, Inosine-uridine nucleoside N-ribohydrolase
[Nucleotide transport and metabolism].
Length = 311
Score = 196 bits (500), Expect = 9e-61
Identities = 103/313 (32%), Positives = 145/313 (46%), Gaps = 24/313 (7%)
Query: 5 PRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGR 64
RK+I+D D G DDA ALLL L + + I+++ IT GN L + N VL+ GR
Sbjct: 2 MRKIIIDCDPGHDDAIALLLALASPE---IDLLGITTVAGNVPLEQTTRNALSVLELLGR 58
Query: 65 KNIPVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVA 124
+IPVY G ++PL+ + G++G G +L + S H AV A
Sbjct: 59 ADIPVYAGAARPLLRE------PITAPEIHGESGLGGPELPEPTRKLESKH-----AVDA 107
Query: 125 LHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFN 184
+ + G ++++ PLTNIAL LR P+ A+ KE+ IMGG GNVT AAEFN
Sbjct: 108 IIDTLMANPGEVTLVATGPLTNIALALRKDPEIAKRIKEIVIMGGAFFVPGNVTPAAEFN 167
Query: 185 FLTDPEAAHIVLGGFHG-PICILPWEACLGIDIS--YEWRYDTLGASDAPYISLLNRLER 241
DPEAA IV G PI ++P + + ++ R G A ++ L
Sbjct: 168 IWVDPEAAKIVFT--SGWPITMVPLDVTHQVLLTPDVLARLRAAGGPAAELVADLLDFYL 225
Query: 242 GISDRAISMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVD--VVH 299
S P L +L + + + E VE AG +TRG VD V
Sbjct: 226 AY---YKSRQGLDGAPLHDPLAVAYLLDPELFTTREANVDVETAGGLTRGMTVVDWRGVL 282
Query: 300 SKTPNVRMIDTVD 312
K PN ++ VD
Sbjct: 283 GKPPNAQVAVDVD 295
>gnl|CDD|239117 cd02651, nuc_hydro_IU_UC_XIUA, nuc_hydro_IU_UC_XIUA:
inosine-uridine preferring,
xanthosine-inosine-uridine-adenosine-preferring and,
uridine-cytidine preferring nucleoside hydrolases.
Nucleoside hydrolases cleave the N-glycosidic bond in
nucleosides generating ribose and the respective base.
These enzymes vary in their substrate specificity. This
group contains proteins similar to nucleoside hydrolases
which hydrolyze both pyrimidine and purine
ribonucleosides: the inosine-uridine preferring
nucleoside hydrolase from Crithidia fasciculata, the
inosine-uridine-xanthosine preferring nucleoside
hydrolase RihC from Escherichia coli and the
xanthosine-inosine-uridine-adenosine-preferring
nucleoside hydrolase RihC from Salmonella enterica
serovar Typhimurium. This group also contains proteins
similar to the pyrimidine-specific uridine-cytidine
preferring nucleoside hydrolases URH1 from Saccharomyces
cerevisiae, E. coli RihA and E. coli RihB. E. coli
RihA is equally efficient with uridine and cytidine, E.
coli RihB prefers cytidine over uridine. S. cerevisiae
URH1 prefers uridine over cytidine. .
Length = 302
Score = 176 bits (449), Expect = 3e-53
Identities = 97/320 (30%), Positives = 147/320 (45%), Gaps = 26/320 (8%)
Query: 7 KVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKN 66
+I+D D G DDA A+LL L + ++++ IT GN L + N ++L GR +
Sbjct: 1 PIIIDCDPGHDDAVAILLALFHPE---LDLLGITTVAGNVPLEKTTRNALKLLTLLGRTD 57
Query: 67 IPVYKGVSKPLI--PKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVA 124
+PV G ++PL+ S +H G++G DL H AV A
Sbjct: 58 VPVAAGAARPLVRPLITASD------IH--GESGLDGADLPPPPRRPEDIH-----AVDA 104
Query: 125 LHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFN 184
+ + R I+++ PLTNIAL LR +P+ A+ KE+ +MGG G GN+T AAEFN
Sbjct: 105 IIDTLRASPEPITLVATGPLTNIALLLRKYPELAERIKEIVLMGGAL-GRGNITPAAEFN 163
Query: 185 FLTDPEAAHIVLGGFHG-PICILPWEACLGIDISYEWRYDTLGASDAPYISLLNRLERGI 243
DPEAA IV G PI ++P + + E + + A P +L L
Sbjct: 164 IFVDPEAAKIVFN--SGIPITMVPLDVTHKALATPEVI-ERIRALGNPVGKMLAELLDFF 220
Query: 244 SDRAISMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVDV--VHSK 301
++ S P +L + + + VE GE+TRG+ VD+ V +
Sbjct: 221 AETYGSAFTEGP-PLHDPCAVAYLLDPELFTTKRANVDVETEGELTRGRTVVDLRGVTGR 279
Query: 302 TPNVRMIDTVDSRLLKDMLL 321
N ++ VD D+LL
Sbjct: 280 PANAQVAVDVDVEKFWDLLL 299
>gnl|CDD|238257 cd00455, nuc_hydro, nuc_hydro: Nucleoside hydrolases. Nucleoside
hydrolases cleave the N-glycosidic bond in nucleosides
generating ribose and the respective base. These enzymes
vary in their substrate specificity. This group
contains eukaryotic, bacterial and archeal proteins
similar to the inosine-uridine preferring nucleoside
hydrolase from Crithidia fasciculata, the
xanthosine-inosine-uridine-adenosine-preferring
nucleoside hydrolase RihC from Salmonella enterica
serovar Typhimurium, the purine-specific
inosine-adenosine-guanosine-preferring nucleoside
hydrolase from Trypanosoma vivax and,
pyrimidine-specific uridine-cytidine preferring
nucleoside hydrolases such as URH1 from Saccharomyces
cerevisiae, RihA and RihB from Escherichia coli.
Nucleoside hydrolases are of interest as a target for
antiprotozoan drugs as, no nucleoside hydrolase activity
or genes encoding these enzymes have been detected in
humans and, parasitic protozoans lack de novo purine
synthesis relying on nucleoside hydrolase to scavenge
purine and/or pyrimidines from the environment. .
Length = 295
Score = 175 bits (446), Expect = 5e-53
Identities = 69/201 (34%), Positives = 99/201 (49%), Gaps = 17/201 (8%)
Query: 8 VILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKNI 67
VILD D GIDDA+AL+ L + IE++ I +GN L + N +L+ GR +I
Sbjct: 1 VILDTDPGIDDAFALMYALLHPE---IELVGIVATYGNVTLEQATQNAAYLLELLGRLDI 57
Query: 68 PVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVALHE 127
PVY G ++PL ++ +H G G + ++D + AV L +
Sbjct: 58 PVYAGATRPLTG---EIPAAYPEIHGEGGLGLPIPPIIEAD---------DPEAVQLLID 105
Query: 128 LTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFNFLT 187
L R++ I+++ L PLTN+A+ L P KE+ IMGG GNVT AE NF
Sbjct: 106 LIRKYPDEITIVALGPLTNLAMAFILDPDIKDRVKEIVIMGGAFLVPGNVTPVAEANFYG 165
Query: 188 DPEAAHIVLGGFHGPICILPW 208
DPEAA+IV +
Sbjct: 166 DPEAANIVFN--SAKNLTIVP 184
>gnl|CDD|239116 cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subgroup of
nucleoside hydrolases similar to Corynebacterium
ammoniagenes Purine/pyrimidine nucleoside hydrolase
(pnhB). Nucleoside hydrolases cleave the N-glycosidic
bond in nucleosides generating ribose and the respective
base. These enzymes vary in their substrate specificity.
.
Length = 304
Score = 148 bits (377), Expect = 1e-42
Identities = 72/190 (37%), Positives = 101/190 (53%), Gaps = 13/190 (6%)
Query: 7 KVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKN 66
K+ILD D GIDDA AL L +++I +T +GN + N +L+ FGR +
Sbjct: 1 KLILDTDPGIDDAMALAYALAHPD---VDLIGVTTVYGNVTIETATRNALALLELFGRPD 57
Query: 67 IPVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVALH 126
+PV +G +KPL ++H G NG GD++L E+ SA L
Sbjct: 58 VPVAEGAAKPL---TRPPFRIATFVH--GDNGLGDVELPAPPR-----QPEDESAADFLI 107
Query: 127 ELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFNFL 186
EL E+ G ++++ + PLTN+AL L P FA+ K++ +MGG GNVT AAE N
Sbjct: 108 ELANEYPGELTLVAVGPLTNLALALARDPDFAKLVKQVVVMGGAFTVPGNVTPAAEANIH 167
Query: 187 TDPEAAHIVL 196
DPEAA IV
Sbjct: 168 GDPEAADIVF 177
>gnl|CDD|178319 PLN02717, PLN02717, uridine nucleosidase.
Length = 316
Score = 142 bits (360), Expect = 5e-40
Identities = 67/192 (34%), Positives = 102/192 (53%), Gaps = 12/192 (6%)
Query: 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRK 65
+K+I+D D GIDDA A+L+ L++ + +E+I +T GN N +L+ GR
Sbjct: 1 KKLIIDTDPGIDDAMAILMALRSPE---VEVIGLTTIFGNVTTKLATRNALHLLEMAGRP 57
Query: 66 NIPVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVAL 125
++PV +G +PL K + D++H G +G G+ +L SA L
Sbjct: 58 DVPVAEGSHEPL--KGGTKPRIADFVH--GSDGLGNTNLPPPKG-----KKIEKSAAEFL 108
Query: 126 HELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFNF 185
E E+ G ++V+ L PLTN+AL ++L P FA+ ++ ++GG GNV AAE N
Sbjct: 109 VEKVSEYPGEVTVVALGPLTNLALAIKLDPSFAKKVGQIVVLGGAFFVNGNVNPAAEANI 168
Query: 186 LTDPEAAHIVLG 197
DPEAA IV
Sbjct: 169 FGDPEAADIVFT 180
>gnl|CDD|239119 cd02653, nuc_hydro_3, NH_3: A subgroup of nucleoside hydrolases.
This group contains eukaryotic and bacterial proteins
similar to nucleoside hydrolases. Nucleoside hydrolases
cleave the N-glycosidic bond in nucleosides generating
ribose and the respective base. These enzymes vary in
their substrate specificity. .
Length = 320
Score = 124 bits (312), Expect = 4e-33
Identities = 100/334 (29%), Positives = 138/334 (41%), Gaps = 50/334 (14%)
Query: 7 KVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRKN 66
KVI+D D GIDDA ALL +L + ++++ IT GN + +V N VL+ GR +
Sbjct: 1 KVIIDCDPGIDDALALLYLLASPD---LDVVGITTTAGNVPVEQVAANALGVLELLGRTD 57
Query: 67 IPVYKGVSKPL----IPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAV 122
IPVY G KPL +H G +G G +L S + + SA
Sbjct: 58 IPVYLGADKPLAGPLTTAQDTH----------GPDGLGYAELPASTR-----TLSDESAA 102
Query: 123 VALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAE 182
A +L R LI L PLTN+AL LR P+ + + L IMGG GN + AE
Sbjct: 103 QAWVDLARAHPDLI-GLATGPLTNLALALREEPELPRLLRRLVIMGGAFNSRGNTSPVAE 161
Query: 183 FNFLTDPEAAHIVLGGFHGPICILPWEACLGIDISYEWR----YDTLGASDAPYISLLNR 238
+N+ DPEAA VL F G + P C G+D++ A +
Sbjct: 162 WNYWVDPEAAKEVLAAFGGH-PVRP-TIC-GLDVTRAVVLTPNLLERLARAKDSVG---- 214
Query: 239 LERGISDRAISMGFN-KW--------VPADSALCTCFLDEKAITVSYETTCSVELAGEIT 289
I D A+ F W V D L+ + VE G +T
Sbjct: 215 --AFIED-ALRFYFEFHWAYGHGYGAVIHDPLAAAVALNP-NLARGRPAYVDVECTGVLT 270
Query: 290 RGQACVDVVH--SKTPNVRMIDTVDSRLLKDMLL 321
GQ VD K N ++ VDS+ + +
Sbjct: 271 -GQTVVDWAGFWGKGANAEILTKVDSQDFMALFI 303
>gnl|CDD|182713 PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional.
Length = 304
Score = 117 bits (295), Expect = 9e-31
Identities = 63/193 (32%), Positives = 98/193 (50%), Gaps = 20/193 (10%)
Query: 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRK 65
+ILD D GIDDA A+ L A + +++ IT GN + + N ++L F
Sbjct: 3 LPIILDTDPGIDDAVAIAAALFAPE---LDLKLITTVAGNVSVEKTTRNALKLLHFFN-S 58
Query: 66 NIPVYKGVSKPLI--PKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVV 123
++PV +G +KPL+ +D + +H G++G D + + +I AV
Sbjct: 59 DVPVAQGAAKPLVRPLRDAAS------VH--GESGMEGYDFPEH-----TRKPLSIPAVE 105
Query: 124 ALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEF 183
A+ + ++++ + PLTNIAL L +P+ K + +MGG+ G GNVT AEF
Sbjct: 106 AMRDALMNAPEPVTLVAIGPLTNIALLLSTYPEVKPYIKRIVLMGGS-AGRGNVTPNAEF 164
Query: 184 NFLTDPEAAHIVL 196
N DPEAA IV
Sbjct: 165 NIAVDPEAAAIVF 177
>gnl|CDD|239120 cd02654, nuc_hydro_CjNH, nuc_hydro_CjNH. Nucleoside hydrolases
similar to Campylobacter jejuni nucleoside hydrolase.
This group contains eukaryotic and bacterial proteins
similar to C. jejuni nucleoside hydrolase. Nucleoside
hydrolases cleave the N-glycosidic bond in nucleosides
generating ribose and the respective base. These enzymes
vary in their substrate specificity. C. jejuni
nucleoside hydrolase is inactive against natural
nucleosides or against common nucleoside analogues. .
Length = 318
Score = 115 bits (290), Expect = 5e-30
Identities = 72/200 (36%), Positives = 103/200 (51%), Gaps = 16/200 (8%)
Query: 7 KVILDVD----AGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAF 62
KVILD D DD AL L+L + + +E++ ++ GN LS V NV R+L+
Sbjct: 1 KVILDNDIAMGRDTDDGLALALLLWSPE---VELLGLSAVSGNCWLSAVTYNVLRMLELA 57
Query: 63 GRKNIPVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGD-SDTLDRSCHVEN--I 119
G IPVY G + PL + + W +G + + SD + + N I
Sbjct: 58 GADAIPVYAGANTPLGRTNRAFHA---WESLYGAYLWQGAWSPEYSDMYTNASIIRNASI 114
Query: 120 SAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVG---N 176
A + + E+ R+ +S++ PLTN+AL LR+ P FA AKEL IMGG +G N
Sbjct: 115 PAALFMIEMVRKHPHEVSIVAAGPLTNLALALRIDPDFAPLAKELVIMGGYLDDIGEFVN 174
Query: 177 VTSAAEFNFLTDPEAAHIVL 196
A++FN + DPEAA IVL
Sbjct: 175 RHYASDFNLIMDPEAASIVL 194
>gnl|CDD|182465 PRK10443, rihA, ribonucleoside hydrolase 1; Provisional.
Length = 311
Score = 110 bits (277), Expect = 5e-28
Identities = 65/192 (33%), Positives = 97/192 (50%), Gaps = 15/192 (7%)
Query: 5 PRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGR 64
+ILD D G DDA AL+L L + + +++ A+T GN + + N R+L R
Sbjct: 2 ALPIILDCDPGHDDAIALVLALASPE---LDVKAVTTSAGNQTPEKTLRNALRMLTLLNR 58
Query: 65 KNIPVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVA 124
+IPV G KPL+ ++L D +H G++G L + ++C +AV
Sbjct: 59 TDIPVAGGAVKPLM-REL---IIADNVH--GESGLDGPALPEPTFAPQNC-----TAVEL 107
Query: 125 LHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFN 184
+ + RE ++++ P TN+AL L P+ + IMGG G+GN T AAEFN
Sbjct: 108 MAKTLRESAEPVTLVSTGPQTNVALLLASHPELHSKIARIVIMGGA-MGLGNWTPAAEFN 166
Query: 185 FLTDPEAAHIVL 196
DPEAA IV
Sbjct: 167 IYVDPEAAEIVF 178
>gnl|CDD|182166 PRK09955, rihB, ribonucleoside hydrolase 2; Provisional.
Length = 313
Score = 93.5 bits (232), Expect = 7e-22
Identities = 66/194 (34%), Positives = 104/194 (53%), Gaps = 22/194 (11%)
Query: 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDN---VCRVLQAF 62
RK+ILD D G DDA A M+ A + I+++ IT GN L + + N VC+ L+
Sbjct: 4 RKIILDCDPGHDDAIA---MMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKLEI- 59
Query: 63 GRKNIPVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAV 122
N+PVY G+ +P++ + + D +H G+ G +D + L R E+ AV
Sbjct: 60 ---NVPVYAGMPQPIMRQQIVA----DNIH--GETG---LDGPVFEPLTR--QAESTHAV 105
Query: 123 VALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAE 182
+ + G I+++ + PL+NIA+ +R+ P +E+ +MGG + G GN T +AE
Sbjct: 106 KYIIDTLMASDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAY-GTGNFTPSAE 164
Query: 183 FNFLTDPEAAHIVL 196
FN DPEAA +V
Sbjct: 165 FNIFADPEAARVVF 178
>gnl|CDD|239114 cd02648, nuc_hydro_1, NH_1: A subgroup of nucleoside hydrolases.
This group contains fungal proteins similar to
nucleoside hydrolases. Nucleoside hydrolases cleave the
N-glycosidic bond in nucleosides generating ribose and
the respective base. These enzymes vary in their
substrate specificity. .
Length = 367
Score = 86.9 bits (215), Expect = 3e-19
Identities = 55/235 (23%), Positives = 89/235 (37%), Gaps = 34/235 (14%)
Query: 5 PRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGR 64
P +I+D D G+DD A+LL L + ++ +++ I+ GN L + NV R+ R
Sbjct: 1 PHPIIIDTDPGVDDVLAILLALSSPEE--VDVALISLTFGNTTLDHALRNVLRLFHVLER 58
Query: 65 ---------KNIPVY-KGVSKPLIPKDLSHKYS---FDWLHFFGKNGFGDI-----DLGD 106
+ KP++ +F G++G + D
Sbjct: 59 ERAWRATPGVRYRAFSADAEKPIVASGSDQPLEGERLTASYFHGRDGLSGVHWLHPDFTP 118
Query: 107 SDTLDRSCHV-----ENISAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNA 161
+T + + V L L E +++ L PLTN+A R P+
Sbjct: 119 VETWIPEIVAPLTPSDKPAYDVILDILREEPDHTVTIAALGPLTNLAAAARKDPETFAKV 178
Query: 162 KELYIMGGNHKGVGNVTSAAEFNFLTDPEAAHIV---------LGGFHGPICILP 207
E+ +MGG GN + AEFN DP AA +V P+ + P
Sbjct: 179 GEVVVMGGAIDVPGNTSPVAEFNCFADPYAAAVVIDEPPSTAPEARRKLPLQVFP 233
>gnl|CDD|239113 cd02647, nuc_hydro_TvIAG, nuc_hydro_ TvIAG: Nucleoside hydrolases
similar to the Inosine-adenosine-guanosine-preferring
nucleoside hydrolase from Trypanosoma vivax.
Nucleoside hydrolases cleave the N-glycosidic bond in
nucleosides generating ribose and the respective base.
Nucleoside hydrolases vary in their substrate
specificity. This group contains eukaryotic and
bacterial proteins similar to the purine specific
inosine-adenosine-guanosine-preferring nucleoside
hydrolase (IAG-NH) from T. vivax. T. vivax IAG-NH is
of the order of a thousand to ten thousand fold more
specific towards the naturally occurring purine
nucleosides, than towards the pyrimidine nucleosides. .
Length = 312
Score = 79.8 bits (197), Expect = 6e-17
Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 27/202 (13%)
Query: 8 VILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVD-NVCR-VLQAFG-R 64
VI D D +DD ALLL+LK E +++ I +A+ +V R ++ G R
Sbjct: 3 VIFDHDGNVDDLVALLLLLKNE---KVDLKGIGVSGIDADCYVEPAVSVTRKLIDRLGQR 59
Query: 65 KNIPVYKGVSKPLI--PKD--LSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENIS 120
IPV KG S+ + P+ +S D L ++ + +
Sbjct: 60 DAIPVGKGGSRAVNPFPRSWRRDAAFSVDHLPI------------LNERYTVETPLAEET 107
Query: 121 AVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTS- 179
A + L E + +++L PLTN+A L P + N +E+YIMGG GNV +
Sbjct: 108 AQLVLIEKIKASLEPVTLLVTGPLTNLARALDSDPDISSNIEEVYIMGGGVDAPGNVFTP 167
Query: 180 ----AAEFNFLTDPEAAHIVLG 197
AEFN DP AA V
Sbjct: 168 PSNGTAEFNIFWDPLAAKTVFD 189
>gnl|CDD|239118 cd02652, nuc_hydro_2, NH_2: A subgroup of nucleoside hydrolases.
This group contains eukaryotic and bacterial proteins
similar to nucleoside hydrolases. Nucleoside hydrolases
cleave the N-glycosidic bond in nucleosides generating
ribose and the respective base. These enzymes vary in
their substrate specificity. .
Length = 293
Score = 63.3 bits (154), Expect = 2e-11
Identities = 63/237 (26%), Positives = 92/237 (38%), Gaps = 34/237 (14%)
Query: 8 VILDVDAG--IDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRK 65
+ILD D G DDA AL + A QK +++A+T +A +D V R +GR
Sbjct: 1 LILDTDIGGDPDDALALA-LAHALQK--CDLLAVTITLADASARRAIDAVNRF---YGRG 54
Query: 66 NIPVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVAL 125
+IP+ G P+D + D F + GD D + + AV AL
Sbjct: 55 DIPI--GADYHGWPED-----AKDHAKF--------LLEGDRLHHDLESAEDALDAVKAL 99
Query: 126 HE-LTREFKGLISVLCLAPLTNIALTLRLFPQ-------FAQNAKELYIMGGNHKGVGNV 177
L ++++ + PLTN+A L Q K L +MGG
Sbjct: 100 RRLLASAEDASVTIVSIGPLTNLAALLDADADPLTGPELVRQKVKRLVVMGGAFYDPDGN 159
Query: 178 TSAAEFNFLTDPEAAHIVLGGFHGPICILPWEAC---LGIDISYEWRYDTLGASDAP 231
E+NF+TDP+AA V G + LG +SY + P
Sbjct: 160 VQHREYNFVTDPKAAQRVAGRAQHLGIPVRIVWSGYELGEAVSYPHVLVIAHPFNTP 216
>gnl|CDD|140334 PTZ00313, PTZ00313, inosine-adenosine-guanosine-nucleoside
hydrolase; Provisional.
Length = 326
Score = 45.6 bits (108), Expect = 1e-05
Identities = 56/217 (25%), Positives = 84/217 (38%), Gaps = 45/217 (20%)
Query: 5 PRKVILDVDAGIDDAWALLLML-KAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAF- 62
P+ VILD D DD AL L+L E+ +I I D C V AF
Sbjct: 2 PKPVILDHDGNHDDLVALALLLGNPEKVKVIGCI-------------CTDADCFVDDAFN 48
Query: 63 --GRKNIPVYKGVSKPLIPKDLS-----HKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCH 115
G+ ++ + PL P S + + +W + KN + D L+ H
Sbjct: 49 VTGKLMCMMHAREATPLFPIGKSSFKGVNPFPSEW-RWSAKN------MDDLPCLNIPEH 101
Query: 116 VENISAV----------VALHELTREFKGLISVLCLAPLTNIALTLRLF-PQFAQNAKEL 164
V + L +L +++ PL+N+A + + +F + +E
Sbjct: 102 VAIWEKLKPENEALVGEELLADLVMSSPEKVTICVTGPLSNVAWCIEKYGEEFTKKVEEC 161
Query: 165 YIMGGNHKGVGNV-----TSAAEFNFLTDPEAAHIVL 196
IMGG GNV +AE+N DP AA VL
Sbjct: 162 VIMGGAVDVGGNVFLPGTDGSAEWNIYWDPPAAKTVL 198
>gnl|CDD|99991 cd03821, GT1_Bme6_like, This family is most closely related to the
GT1 family of glycosyltransferases. Bme6 in Brucella
melitensis has been shown to be involved in the
biosynthesis of a polysaccharide.
Length = 375
Score = 35.0 bits (81), Expect = 0.042
Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 14/93 (15%)
Query: 154 FPQFAQNAKELYIMGGNHKGVGNVTSAAEFNFLTDPEAAHIVLGGFHGPICILPWEACLG 213
K L + + +AA + ++ EAA I G PI ++P G
Sbjct: 127 ALPHKALKKRLAWFLFERR---LLQAAAAVHATSEQEAAEIRRLGLKAPIAVIP----NG 179
Query: 214 IDISY-------EWRYDTLGASDAPYISLLNRL 239
+DI R D I L RL
Sbjct: 180 VDIPPFAALPSRGRRRKFPILPDKRIILFLGRL 212
>gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase;
Validated.
Length = 502
Score = 29.7 bits (67), Expect = 2.1
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 173 GVGNVTSAAEFNFLTDPEAAHIVLGGFHGPICI 205
G GNV F +L + A + +G G ICI
Sbjct: 288 GAGNVVDREGFRYLAEAGADFVKVGIGGGSICI 320
>gnl|CDD|233441 TIGR01500, sepiapter_red, sepiapterin reductase. This model
describes sepiapterin reductase, a member of the short
chain dehydrogenase/reductase family. The enzyme
catalyzes the last step in the biosynthesis of
tetrahydrobiopterin. A similar enzyme in Bacillus cereus
was isolated for its ability to convert benzil to
(S)-benzoin, a property sepiapterin reductase also
shares. Cutoff scores for this model are set such that
benzil reductase scores between trusted and noise
cutoffs.
Length = 256
Score = 28.7 bits (64), Expect = 3.7
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 10/65 (15%)
Query: 95 GKNGFGDIDLGDSDTLDRSCHVENISAVVALHELTREFKGL---------ISVLC-LAPL 144
G G +DL DS + + S + + + FK IS LC + P
Sbjct: 99 GDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQPF 158
Query: 145 TNIAL 149
AL
Sbjct: 159 KGWAL 163
>gnl|CDD|237445 PRK13609, PRK13609, diacylglycerol glucosyltransferase;
Provisional.
Length = 380
Score = 28.9 bits (65), Expect = 3.7
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 156 QFAQNAKELYIMGGNHKGVGNVTSAAEFNFLTDPEAAHIVLGG 198
Q N K L IM G H +GNV + + ++ P+ +V+ G
Sbjct: 197 QLCPNKKILLIMAGAHGVLGNVKELCQ-SLMSVPDLQVVVVCG 238
>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional.
Length = 746
Score = 28.0 bits (62), Expect = 8.2
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 188 DPEAAHIVLGGFHGPICILPWEACLGIDISYEWRYDTLGASDAPYISL 235
D E +IV H + I P +D Y RY SD P++ L
Sbjct: 310 DAETQYIVCKNIHALLVIFPNLLRTNLDSFYV-RY-----SDPPFVKL 351
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.433
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,750,832
Number of extensions: 1600999
Number of successful extensions: 1258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1212
Number of HSP's successfully gapped: 24
Length of query: 325
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 228
Effective length of database: 6,635,264
Effective search space: 1512840192
Effective search space used: 1512840192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.7 bits)