RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17834
(325 letters)
>3t8i_A Purine nucleosidase, (IUNH-2); purine nucleoside hydrolase,
thermostable protein, open (ALP structure, rossmann
fold, NH-fold; 1.80A {Sulfolobus solfataricus}
Length = 306
Score = 240 bits (614), Expect = 3e-78
Identities = 88/320 (27%), Positives = 146/320 (45%), Gaps = 24/320 (7%)
Query: 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRK 65
RKVI+D D DD A+LL + +++ +T GN ++ V N L+ G++
Sbjct: 2 RKVIVDSDTATDDTIAILLASRF-----FQLLGVTIVAGNVNYNQEVKNALFTLEYIGKQ 56
Query: 66 NIPVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVAL 125
++PVY G +P++ + + G NG + + + + E A+ A+
Sbjct: 57 DVPVYLGSQRPILGNWRTVE------EVHGSNGMSNWNYPEPNK-----RPEKEHAIDAI 105
Query: 126 HELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFNF 185
L++E +G + +L ++PLTNIAL P + K+++IMGG GN T AEFNF
Sbjct: 106 LRLSKEHEGELEILAISPLTNIALAYLKDPSVVKRVKKIWIMGGAF-SKGNTTPIAEFNF 164
Query: 186 LTDPEAAHIVLG-GFHGPICILPWEACLGIDISYEWRYDTLGASDAPYISLLNRLERGIS 244
DPEAA IVL GF I I+PWE E ++ + + + + + +
Sbjct: 165 WVDPEAAKIVLDAGF--DITIVPWEVAEISGSLNERDWEYISKLNTKLSNFFINVNKTLK 222
Query: 245 DRAI-SMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVDV--VHSK 301
+ + G + + DS + D I S VEL + +RG +D +H
Sbjct: 223 EYTTKNQGISGSIHPDSLTVSIAHDNSIILDSSLKYVDVELCSK-SRGAMLIDWYSLHKN 281
Query: 302 TPNVRMIDTVDSRLLKDMLL 321
PN ++ D K++L
Sbjct: 282 KPNAEIVLKADGGKFKNLLF 301
>3t8j_A Purine nucleosidase, (IUNH-1); nucleoside hydrolase, thermostable
protein, open (alpha,beta structure, rossmann fold,
NH-fold; 1.60A {Sulfolobus solfataricus}
Length = 311
Score = 239 bits (612), Expect = 7e-78
Identities = 82/322 (25%), Positives = 135/322 (41%), Gaps = 24/322 (7%)
Query: 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRK 65
R I+D D DD +L L+LK I+++A+T GN + V N L+ R
Sbjct: 2 RHFIIDCDTAEDDVLSLYLLLKNN----IDVVAVTIVEGNISYEQEVKNALWALEQVNR- 56
Query: 66 NIPVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVAL 125
IPVY G +KPL+ K+ GK G GD+ + + A +A+
Sbjct: 57 EIPVYPGANKPLL-KNYITVE-----KVHGKGGIGDVTVEPKRL-----KAQEKHAALAI 105
Query: 126 HELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFNF 185
+L E+ G + L ++PLTN+AL L + K++++MGG G+GN+T AEFN
Sbjct: 106 IDLANEYAGELEFLAISPLTNLALAYLLDNSIVKKIKKVWVMGGAVFGIGNITPVAEFNI 165
Query: 186 LTDPEAAHIVLGGFHGPICILPWEACLGIDISYEWRYDTLGASDAPYISLLNRLERGISD 245
DP+AA IV I ++PW+ + ++ E + + L +
Sbjct: 166 WVDPDAAKIVFNAGF-DITMIPWDVIINYPVTDEEW-NVIKNMKTRMSELYVSMYLHYRQ 223
Query: 246 RAI-SMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVDVVH----- 299
+ N D+ +D T + ++ ITRG VD
Sbjct: 224 YSSTVQKINGHPHPDAITTAIAIDGSIATRREKRFVVIDNTDNITRGMTLVDRFDADTSW 283
Query: 300 SKTPNVRMIDTVDSRLLKDMLL 321
S PN ++ ++ + + +
Sbjct: 284 SDKPNAEIVYEINKKSFMEKIY 305
>3fz0_A Nucleoside hydrolase, putative; NH fold, open alpha/beta structure,
glycosidase; HET: BTB; 2.50A {Trypanosoma brucei}
Length = 360
Score = 233 bits (596), Expect = 6e-75
Identities = 88/359 (24%), Positives = 151/359 (42%), Gaps = 53/359 (14%)
Query: 5 PRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGR 64
RK+I+D D G DDA A++L + +E+IAIT GN E+++ ++N+ ++L +
Sbjct: 6 HRKLIIDTDCGGDDAIAIMLAMTQPD---VEVIAITVVWGNVEVNQGMENIGKLLDLYDA 62
Query: 65 KNIPVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVA 124
+IP ++G PL+ + + ++ FG +GFGD S + + +A+
Sbjct: 63 -DIPFFRGAEGPLVGERETVQW-----GGFGSDGFGDAGFPPSQ--RVALQPKRHAALEI 114
Query: 125 LHELTREFKG---LISVLCLAPLTNIALTLRLFPQFAQNA-----KELYIMGGNHKGVGN 176
L L + ++ L PLTN+AL LRL P + IM G + GN
Sbjct: 115 LKILEEAEPSDDVVYQLVALGPLTNVALALRLNPDLFSKLGTDTIPGIVIMNGTSESKGN 174
Query: 177 VTSAAEFNFLTDPEAAHIVL--GGFHGPICILPWEACLGIDISYEWR------------- 221
AAEFN DPEA +VL G+ P+ ++ WE + +++ +
Sbjct: 175 SNMAAEFNSHCDPEAGVVVLQHKGWKCPVQLVNWEVTVNSPMTWGFYDKLVNRESTPNGR 234
Query: 222 -----------YDTLGASDAPYISLLNRLERGISDRAISMGFNKWVPADSALCTCFLDEK 270
+ L + + + R + A + V D+ + +
Sbjct: 235 VAVNQNKWQEFIEKLFQRLEAFTRIHDDGTRADTGDAEATQDVTCVVPDAVAVLVAIRPE 294
Query: 271 AITVSYETTCSVELAGEITRGQACVDVVH--------SKTPNVRMIDTVDSRLLKDMLL 321
++ S+ T +VEL G TRG C+D + N +I VD+ + L
Sbjct: 295 SVLDSFLTYVTVELHGRETRGATCIDWYGTEQSMAKKGRWRNCNVITKVDNEMFLKALR 353
>1yoe_A Hypothetical protein YBEK; pyrimidine nucleoside hydrolase,
bacterial nucleosidase, RIB enzyme-product complex,
hydrolase; HET: RIB; 1.78A {Escherichia coli} PDB:
3g5i_A*
Length = 322
Score = 225 bits (575), Expect = 5e-72
Identities = 89/322 (27%), Positives = 140/322 (43%), Gaps = 24/322 (7%)
Query: 5 PRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGR 64
++LD D G DDA A++L L + + +++ AIT GN + + NV R+L R
Sbjct: 13 ALPILLDCDPGHDDAIAIVLALASPE---LDVKAITSSAGNQTPEKTLRNVLRMLTLLNR 69
Query: 65 KNIPVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVA 124
+IPV G KPL+ ++L D +H G++G L + +N +AV
Sbjct: 70 TDIPVAGGAVKPLM-RELIIA---DNVH--GESGLDGPALPEPTF-----APQNCTAVEL 118
Query: 125 LHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFN 184
+ + RE ++++ P TN+AL L P+ + IMGG G+GN T AAEFN
Sbjct: 119 MAKTLRESAEPVTIVSTGPQTNVALLLNSHPELHSKIARIVIMGGAM-GLGNWTPAAEFN 177
Query: 185 FLTDPEAAHIVLG-GFHGPICILPWEACLGIDISYEWRYDTLGASDAPYISLLNRLERGI 243
DPEAA IV G P+ + + I E + A P +++ L
Sbjct: 178 IYVDPEAAEIVFQSGI--PVVMAGLDVTHKAQIHVEDT-ERFRAIGNPVSTIVAELLDFF 234
Query: 244 SDRAISMGFNKWVPA--DSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVDV--VH 299
+ + D +L + + S E VE G+ T+G VD +
Sbjct: 235 LEYHKDEKWGFVGAPLHD-PCTIAWLLKPELFTSVERWVGVETQGKYTQGMTVVDYYYLT 293
Query: 300 SKTPNVRMIDTVDSRLLKDMLL 321
PN ++ VD + D+L
Sbjct: 294 GNKPNATVMVDVDRQGFVDLLA 315
>2mas_A Inosine-uridine nucleoside N-ribohydrolase; purine nucleoside
hydrolase, IU-NH, purine nucleosidase; HET: PIR; 2.30A
{Crithidia fasciculata} SCOP: c.70.1.1 PDB: 1mas_A*
1ezr_A
Length = 314
Score = 217 bits (555), Expect = 3e-69
Identities = 77/319 (24%), Positives = 134/319 (42%), Gaps = 19/319 (5%)
Query: 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRK 65
+K+ILD D G+DDA A+LL + IE++AIT GN L++V N V G
Sbjct: 2 KKIILDCDPGLDDAVAILLAHGNPE---IELLAITTVVGNQTLAKVTRNAQLVADIAGIT 58
Query: 66 NIPVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVAL 125
+P+ G KPL+ + + +H G++G G + V+ AV +
Sbjct: 59 GVPIAAGCDKPLV-RKIMTA---GHIH--GESGMGTVAYPAEFKN----KVDERHAVNLI 108
Query: 126 HELTREFK-GLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFN 184
+L + I+++ LTNIA+ RL P+ KE+ +MGG + GN TS AEFN
Sbjct: 109 IDLVMSHEPKTITLVPTGGLTNIAMAARLEPRIVDRVKEVVLMGGGY-HEGNATSVAEFN 167
Query: 185 FLTDPEAAHIVLGGFHGPICILPWEACLGIDISYEWRYDTLGASDAPYISLLNRLERGIS 244
+ DPEAAHIV + ++ + + + D + + +
Sbjct: 168 IIIDPEAAHIVFNESW-QVTMVGLDLTHQALATPPIL-QRVKEVDTNPARFMLEIMDYYT 225
Query: 245 DRAISMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVDV--VHSKT 302
S + ++ + ++ + +EL G++T G D +
Sbjct: 226 KIYQSNRYMAAAAVHDPCAVAYVIDPSVMTTERVPVDIELTGKLTLGMTVADFRNPRPEH 285
Query: 303 PNVRMIDTVDSRLLKDMLL 321
+ ++ +D ++L
Sbjct: 286 CHTQVAVKLDFEKFWGLVL 304
>1q8f_A Pyrimidine nucleoside hydrolase; open alpha-beta structure,
NH-fold; 1.70A {Escherichia coli} SCOP: c.70.1.1 PDB:
3b9x_A* 3mkn_A* 3mkm_A*
Length = 313
Score = 216 bits (552), Expect = 8e-69
Identities = 78/325 (24%), Positives = 134/325 (41%), Gaps = 32/325 (9%)
Query: 5 PRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGR 64
RK+ILD D G DDA A+++ K I+++ IT GN L + + N V Q
Sbjct: 3 KRKIILDCDPGHDDAIAIMMAAKHPA---IDLLGITIVAGNQTLDKTLINGLNVCQKL-E 58
Query: 65 KNIPVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVA 124
N+PVY G+ +P++ + D +H G G E+ AV
Sbjct: 59 INVPVYAGMPQPIM-RQQIVA---DNIH--GDTGLDGPVFEPLTR-----QAESTHAVKY 107
Query: 125 LHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFN 184
+ + G I+++ + PL+NIA+ +R+ P +E+ +MGG + G GN T +AEFN
Sbjct: 108 IIDTLMASDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAY-GTGNFTPSAEFN 166
Query: 185 FLTDPEAAHIVLG-GFHGPICILPWEACLGIDISYEWRYDTLGASDAPYISLLNRLERGI 243
DPEAA +V G P+ ++ + + + + + P L I
Sbjct: 167 IFADPEAARVVFTSGV--PLVMMGLDLTNQTVCTPDVI-ARMERAGGPAGELF----SDI 219
Query: 244 SDRAISMGFNKWVPADSAL---CT--CFLDEKAITVSYETTCSVELAGEITRGQACVDV- 297
+ + F + A + ++ I E V++ G+ D
Sbjct: 220 MNFTLKTQFENYGLAGGPVHDATCIGYLINPDGIKTQ-EMYVEVDVNSGPCYGRTVCDEL 278
Query: 298 -VHSKTPNVRMIDTVDSRLLKDMLL 321
V K N ++ T+D+ ++
Sbjct: 279 GVLGKPANTKVGITIDTDWFWGLVE 303
>2c40_A Inosine-uridine preferring nucleoside hydrolase F protein; spine;
2.2A {Bacillus anthracis}
Length = 312
Score = 202 bits (516), Expect = 2e-63
Identities = 58/322 (18%), Positives = 108/322 (33%), Gaps = 25/322 (7%)
Query: 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRK 65
+KV + D G+DD +L L+L+ + +E+ ++ + L + +++ FG+
Sbjct: 2 KKVYFNHDGGVDDLVSLFLLLQMDN---VELTGVSVIPADCYLEPAMSASRKIIDRFGKN 58
Query: 66 NIPVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVAL 125
I V S+ P + ++ + + HV A L
Sbjct: 59 TIEVAASNSRGKNPFPKDWRMHAFYVD--ALPILNESGKVVT-------HVAAKPAHHHL 109
Query: 126 HELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVT-----SA 180
E + + ++L PLT++A L P K L MGG + GNV
Sbjct: 110 IETLLQTEEKTTLLFTGPLTDLARALYEAPIIENKIKRLVWMGGTFRTAGNVHEPEHDGT 169
Query: 181 AEFNFLTDPEAAHIVLG-GFHGPICILPWEACLGIDISYEWRYDTLGASDAPYISLLNRL 239
AE+N DPEA V I ++ E+ + ++ + R +
Sbjct: 170 AEWNSFWDPEAVARVWEANI--EIDLITLESTNQVPLTIDIR-EQWAKERKYIGIDFLGQ 226
Query: 240 ERGISDRAISMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVDVVH 299
I + N L F+ + + V G ++G+
Sbjct: 227 CYAIVPPLVHFAKNSTYYLWDVLTAAFVGKADLAKVQTINSIVHTYGP-SQGRTVET--- 282
Query: 300 SKTPNVRMIDTVDSRLLKDMLL 321
V ++ V+ D +
Sbjct: 283 DDGRPVHVVYDVNHDRFFDYIT 304
>3epw_A IAG-nucleoside hydrolase; rossmann fold, active site loops,
aromatic stacking; HET: JMQ; 1.30A {Trypanosoma vivax}
PDB: 3epx_A* 1hoz_A 1hp0_A* 2ff1_A* 2ff2_A* 1kic_A*
1kie_A* 1r4f_A* 3b9g_A*
Length = 338
Score = 200 bits (510), Expect = 3e-62
Identities = 51/327 (15%), Positives = 111/327 (33%), Gaps = 17/327 (5%)
Query: 5 PRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFG- 63
+ V+LD D +DD A++L+ +K + +I C + + + +++
Sbjct: 13 AKNVVLDHDGNLDDFVAMVLLASNTEK--VRLIGALCTDADCFVENGFNVTGKIMCLMHN 70
Query: 64 RKNIPVYKGVSKPLIPKD-LSHKYSFDWLHFFGKNGFGDIDLGDSDTL--DRSCHVENIS 120
N+P++ + ++ + +++ ++ L E
Sbjct: 71 NMNLPLFPIGKSAATAVNPFPKEWRC---LAKNMDDMPILNIPENVELWDKIKAENEKYE 127
Query: 121 AVVALHELTREFKGLISVLCLAPLTNIALTLRLF-PQFAQNAKELYIMGGNHKGVGNV-- 177
L +L + +++ PL+N+A + + +F +E IMGG GNV
Sbjct: 128 GQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAVDVRGNVFL 187
Query: 178 ---TSAAEFNFLTDPEAAHIVLGGFHGPICILPWEACLGIDISYEWRYDTLGASDAPYIS 234
AE+N DP +A V G + ++ + + + G +S
Sbjct: 188 PSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPVRSPYV-QRFGEQTNFLLS 246
Query: 235 LLNRLERGISDRAISMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQAC 294
+L + + A AL ++ ++ + V + + G
Sbjct: 247 ILVGTMWAMCTHCELLRDGDGYYAWDALTAAYVVDQKVANVDPVPIDVVVDKQPNEGATV 306
Query: 295 VDVVHSKTPNVRMIDTVDSRLLKDMLL 321
P + ++ DMLL
Sbjct: 307 RTDAE-NYPLTFVARNPEAEFFLDMLL 332
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 8e-04
Identities = 40/247 (16%), Positives = 65/247 (26%), Gaps = 85/247 (34%)
Query: 56 CRVLQAFGRKNIP-------VYKGVSKP---LIPKDLSHKYSFDWLHFFGKNGFGDIDLG 105
R +A+ ++P + P L +L+ + D+++ N
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT--NS------- 358
Query: 106 DSDTLDRSCHVENISAVVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELY 165
L VE ++L + V+ P + L L L A + +
Sbjct: 359 ---HLPAGKQVE-----ISLVNGAKNL-----VVSGPPQSLYGLNLTLRKAKAPSGLD-- 403
Query: 166 IMGGNHKGVGNVTSAAEF---------NFL--TDPEAAHIVLGGFHGPI------CILPW 208
S F FL P FH + I
Sbjct: 404 ------------QSRIPFSERKLKFSNRFLPVASP---------FHSHLLVPASDLINKD 442
Query: 209 EACLGIDIS-YEWR---YDTLGASDAPYISLLNRLERGISDRAISMGFNK---WVPADSA 261
+ + + + YDT SD L L IS+R + W
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSD------LRVLSGSISERIVDCIIRLPVKWETTTQF 496
Query: 262 LCTCFLD 268
T LD
Sbjct: 497 KATHILD 503
Score = 33.9 bits (77), Expect = 0.080
Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 27/98 (27%)
Query: 1 MSIYPRKVILDVDAGIDDAWALLLMLKAEQKNLIEI---------IAITCCHGNAELSEV 51
++I P +V + ++ + L+EI G+
Sbjct: 1810 IAINPGRVAASFSQ--EALQYVVERVGKRTGWLVEIVNYNVENQQYVAA---GDLR---A 1861
Query: 52 VDNVCRVLQAFGRKNIPVYKGVSKPLIPKDLSHKYSFD 89
+D V VL + I + + L S +
Sbjct: 1862 LDTVTNVLNFIKLQKIDIIE----------LQKSLSLE 1889
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.002
Identities = 47/299 (15%), Positives = 92/299 (30%), Gaps = 70/299 (23%)
Query: 45 NAELSEVV---DNVCRVLQAFG-----RKNIPVYKGVSKPLIPKDLSHKYSFDWLHFFGK 96
E+ ++ D V L+ F ++ + V K V + L + ++ +L
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM-VQKFVEEVL-------RINYKFL----M 95
Query: 97 NGFGDIDLGDSDTLDR--SCH--VENISAVVALHELTRE--FKGLISVLC-LAPLTNIAL 149
+ S + N + V A + ++R + L L L P N+ +
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 150 TLRLFPQFAQNAKELYIMGGNHKGV--GNVTSAAEFNFLTDPEAAHIVLGGFHGPICILP 207
+ G+ K +V + + D + + L + P +L
Sbjct: 156 ---------------DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 208 --WEACLGIDISYEWRYDTLGASDAPYISLLNRLERGISDRAISMGFNKWVPADSALCTC 265
+ ID ++ R D S+ L R + + C
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP--------------YENC 246
Query: 266 FL------DEKAITVSYETTCSVELAGEITRGQACVDVVHSKTPNVRMIDTVDSRLLKD 318
L + KA ++ +C + L TR + D + + T +D L D
Sbjct: 247 LLVLLNVQNAKAWN-AFNLSCKILL---TTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Score = 37.9 bits (87), Expect = 0.005
Identities = 56/315 (17%), Positives = 100/315 (31%), Gaps = 78/315 (24%)
Query: 2 SIYPRKV--ILDVDAGIDDAWALLLMLKAE--QKNLIEIIAITC----CHGNAELSEVVD 53
+ + V +L ++ + L+ +K E Q +++ + I + N ++
Sbjct: 77 EMVQKFVEEVLRINYK----F-LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK--Y 129
Query: 54 NVCR----------VLQAFGRKNIPVY--KGVSKP------LIPKDLSHKYSFD--WLHF 93
NV R +L+ KN+ + G K + + K F WL+
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 94 FGKNGFGDIDLG---------DSDTLDRSCHVENISAVVALHELTREFKGLIS----VLC 140
+ L D + RS H NI + +H + E + L+ C
Sbjct: 190 -KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK--LRIHSIQAELRRLLKSKPYENC 246
Query: 141 LAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFNF---------LTDPEA 191
L L N+ + + F + K L K V + SAA LT E
Sbjct: 247 LLVLLNVQ-NAKAWNAFNLSCKILLTT--RFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 192 AHIVLGGFHGPICILPWEAC----LGIDISYEWRYDTLGASDAPYISLLNRLERGISDR- 246
++L LP E + I + S ++ + + D+
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSI--------IAESIRDGLATWDNWKHVNCDKL 355
Query: 247 --AISMGFNKWVPAD 259
I N PA+
Sbjct: 356 TTIIESSLNVLEPAE 370
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2
PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 30.5 bits (69), Expect = 0.75
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 9/74 (12%)
Query: 51 VVDNVCRVLQAFGRKNIPVYKGVSKPLIPKDLSHKYSFDWLHFFGKN-GFGDIDLGDSDT 109
+VDN+ R + ++ + L P H W GK+ D+ D +
Sbjct: 40 IVDNLVR--------RLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFEF 91
Query: 110 LDRSCHVENISAVV 123
L S +VV
Sbjct: 92 LAESFKSFEPDSVV 105
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger,
toprim, walker B ATP binding motif; 2.50A {Deinococcus
radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Length = 228
Score = 29.5 bits (67), Expect = 1.3
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 111 DRS--CHVENISAVVALHELTREFKGLISVL--CLAPLTNI 147
D+ C VE V+AL E + E++GL VL L+P+ +
Sbjct: 78 DQRTICVVEEPGDVIAL-ERSGEYRGLYHVLHGVLSPMNGV 117
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II;
metal-dependent hydrolases of the beta-lactamase
superfamily hydrolase; 2.10A {Thermoanaerobacter
tengcongensis}
Length = 284
Score = 27.7 bits (61), Expect = 4.6
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 166 IMGGNHKGVGNVTSAAEFNFLTDPEAAHIVLGGFH 200
+ G +H G+ N+ A F ++GGFH
Sbjct: 195 VTGCSHAGILNILETARNRFGVSY--IKSLIGGFH 227
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside
hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Length = 437
Score = 27.4 bits (60), Expect = 7.0
Identities = 31/165 (18%), Positives = 54/165 (32%), Gaps = 20/165 (12%)
Query: 5 PRKVILDVDAG--IDDAWALL-LMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQA 61
R VI D G DD +L+ ++ A + +L II T C + + V R+L A
Sbjct: 29 YR-VIHTTDMGADPDDEQSLVRQLVMANEYDLEGIITTTGCWKKSTSNT--AYVDRILNA 85
Query: 62 FGRKNIPVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISA 121
+ + Y P + K + +L G +GD + S I
Sbjct: 86 YSQ----AY-----PNLSKHAEGFPTPAYLDSINVMGQRGYGMGDVGSGKDSAGSNLI-- 134
Query: 122 VVALHELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYI 166
+ + ++ + C IA + A+
Sbjct: 135 ---IAAVDKDDPRPVWATCWGGCNTIAQAVWKVQNTRSQAQLDAF 176
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor,
carbohydrate binding, coiled-coil, jelly roll; HET: ARA;
1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A*
1xja_A 2ara_A
Length = 164
Score = 26.5 bits (58), Expect = 9.1
Identities = 9/70 (12%), Positives = 18/70 (25%), Gaps = 12/70 (17%)
Query: 77 LIPKDLSHKY---------SFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVALHE 127
L P H Y W++F + + + L +
Sbjct: 67 LFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEW-LNWPSIFANTGFF--RPDEAHQPH 123
Query: 128 LTREFKGLIS 137
+ F +I+
Sbjct: 124 FSDLFGQIIN 133
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.433
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,151,648
Number of extensions: 312047
Number of successful extensions: 584
Number of sequences better than 10.0: 1
Number of HSP's gapped: 534
Number of HSP's successfully gapped: 22
Length of query: 325
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 231
Effective length of database: 4,077,219
Effective search space: 941837589
Effective search space used: 941837589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)