RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17834
(325 letters)
>d1kica_ c.70.1.1 (A:) Inosine-adenosine-guanosine preferring
nucleoside hydrolase {Trypanosoma vivax [TaxId: 5699]}
Length = 327
Score = 187 bits (475), Expect = 1e-57
Identities = 51/326 (15%), Positives = 108/326 (33%), Gaps = 15/326 (4%)
Query: 5 PRKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAF-G 63
+ V+LD +DD A++L+ +K + +I C + + + +++
Sbjct: 2 AKNVVLDHAGNLDDFVAMVLLASNTEK--VRLIGALCTDADCFVENGFNVTGKIMCLMHN 59
Query: 64 RKNIPVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTL--DRSCHVENISA 121
N+P++ + K + +++ ++ L E
Sbjct: 60 NMNLPLFPIGKSAATAVNPFPKEWRC--LAKNMDDMPILNIPENVELWDKIKAENEKYEG 117
Query: 122 VVALHELTREFKGLISVLCLAPLTNIALTLRL-FPQFAQNAKELYIMGGNHKGVGNV--- 177
L +L + +++ PL+N+A + +F +E IMGG GNV
Sbjct: 118 QQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAVDVRGNVFLP 177
Query: 178 --TSAAEFNFLTDPEAAHIVLGGFHGPICILPWEACLGIDISYEWRYDTLGASDAPYISL 235
AE+N DP +A V G + ++ + + + G +S+
Sbjct: 178 STDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPVRSPY-VQRFGEQTNFLLSI 236
Query: 236 LNRLERGISDRAISMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACV 295
L + + A AL ++ ++ + V + + G
Sbjct: 237 LVGTMWAMCTHCELLRDGDGYYAWDALTAAYVVDQKVANVDPVPIDVVVDKQPNEGATVR 296
Query: 296 DVVHSKTPNVRMIDTVDSRLLKDMLL 321
P + ++ DMLL
Sbjct: 297 T-DAENYPLTFVARNPEAEFFLDMLL 321
>d2masa_ c.70.1.1 (A:) Inosine-uridine nucleoside N-ribohydrolase,
IU-NH {Crithidia fasciculata [TaxId: 5656]}
Length = 313
Score = 167 bits (424), Expect = 2e-50
Identities = 77/318 (24%), Positives = 129/318 (40%), Gaps = 17/318 (5%)
Query: 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRK 65
+K+ILD D G+DDA A+LL + IE++AIT GN L++V N V G
Sbjct: 2 KKIILDCDPGLDDAVAILLAHGNPE---IELLAITTVVGNQTLAKVTRNAQLVADIAGIT 58
Query: 66 NIPVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVAL 125
+P+ G KPL+ + H G++G G + ++ E + + +
Sbjct: 59 GVPIAAGCDKPLV------RKIMTAGHIHGESGMGTVAY---PAEFKNKVDERHAVNLII 109
Query: 126 HELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFNF 185
+ I+++ LTNIA+ RL P+ KE+ +MGG + GN TS AEFN
Sbjct: 110 DLVMSHEPKTITLVPTGGLTNIAMAARLEPRIVDRVKEVVLMGGGY-HEGNATSVAEFNI 168
Query: 186 LTDPEAAHIVLGGFHGPICILPWEACLGIDISYEWRYDTLGASDAPYISLLNRLERGISD 245
+ DPEAAHIV + ++ + + P +L ++
Sbjct: 169 IIDPEAAHIVF-NESWQVTMVGLDLTHQALATPPILQRVKEVDTNPARFMLEIMDYYTKI 227
Query: 246 RAISMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVDV--VHSKTP 303
+ D +D +T +EL G++T G D +
Sbjct: 228 YQSNRYMAAAAVHDPCAVAYVIDPSVMTTE-RVPVDIELTGKLTLGMTVADFRNPRPEHC 286
Query: 304 NVRMIDTVDSRLLKDMLL 321
+ ++ +D ++L
Sbjct: 287 HTQVAVKLDFEKFWGLVL 304
>d1q8fa_ c.70.1.1 (A:) Pyrimidine nucleoside hydrolase YeiK
{Escherichia coli [TaxId: 562]}
Length = 308
Score = 166 bits (420), Expect = 8e-50
Identities = 76/318 (23%), Positives = 130/318 (40%), Gaps = 20/318 (6%)
Query: 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQAFGRK 65
RK+ILD D G DDA A+++ K I+++ IT GN L + + N V Q
Sbjct: 2 RKIILDCDPGHDDAIAIMMAAKHPA---IDLLGITIVAGNQTLDKTLINGLNVCQKLEI- 57
Query: 66 NIPVYKGVSKPLIPKDLSHKYSFDWLHFFGKNGFGDIDLGDSDTLDRSCHVENISAVVAL 125
N+PVY G+ +P++ + N GD L + E+ AV +
Sbjct: 58 NVPVYAGMPQPIMRQ-----------QIVADNIHGDTGLDGPVFEPLTRQAESTHAVKYI 106
Query: 126 HELTREFKGLISVLCLAPLTNIALTLRLFPQFAQNAKELYIMGGNHKGVGNVTSAAEFNF 185
+ G I+++ + PL+NIA+ +R+ P +E+ +M G G GN T +AEFN
Sbjct: 107 IDTLMASDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLM-GGAYGTGNFTPSAEFNI 165
Query: 186 LTDPEAAHIVLGGFHGPICILPWEACLGIDISYEWRYDTLGASDAPYISLLNRLERGISD 245
DPEAA +V P+ ++ + + + A + + +
Sbjct: 166 FADPEAARVVFTSGV-PLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKT 224
Query: 246 RAISMGFNKWVPADSALCTCFLDEKAITVSYETTCSVELAGEITRGQACVDV--VHSKTP 303
+ + G D A C +L + E V++ G+ D V K
Sbjct: 225 QFENYGLAGGPVHD-ATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDELGVLGKPA 283
Query: 304 NVRMIDTVDSRLLKDMLL 321
N ++ T+D+ ++
Sbjct: 284 NTKVGITIDTDWFWGLVE 301
>d1uzka3 g.23.1.1 (A:1529-1604) Fibrillin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 27.6 bits (61), Expect = 0.52
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 265 CFLDEKAITVSYETTCSVELAGEITRGQACVDV 297
C+LD + + +T CS E+ +++ C +
Sbjct: 6 CYLDIRPRGDNGDTACSNEIGVGVSKASCCCSL 38
>d2g6ta1 c.147.1.1 (A:1-305) Hypothetical protein CAC2185
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 305
Score = 27.1 bits (60), Expect = 3.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 75 KPLIPKDLSHKYSFDWLHFFGKNGFGDI 102
K +I K Y FD++ F K + DI
Sbjct: 47 KEVIDKTEISNYEFDYIIIFNKERYSDI 74
>d1ksqa_ g.23.1.1 (A:) Transforming growth factor-beta binding
protein-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 24.9 bits (54), Expect = 4.9
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 264 TCFLDEKAITVSYETTCSVELAGEITRGQACVDV 297
C+ + ++ + C LA +T+ + C
Sbjct: 11 ECYYN-----LNDASLCDNVLAPNVTKQECCCTS 39
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain
{Escherichia coli [TaxId: 562]}
Length = 197
Score = 26.2 bits (56), Expect = 5.3
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 6 RKVILDVDAGIDDAWALLLMLKAEQKNLIEIIAITCCHGNAELSEVVDNVCRVLQ 60
KVIL + G+D + +L+ +A KNL + E +V+D
Sbjct: 21 DKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDMFGDHFG 75
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.433
Gapped
Lambda K H
0.267 0.0481 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,253,115
Number of extensions: 57657
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 14
Length of query: 325
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 239
Effective length of database: 1,226,816
Effective search space: 293209024
Effective search space used: 293209024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.8 bits)