RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17835
(702 letters)
>2i75_A Tyrosine-protein phosphatase non-receptor type 4; PTPN4, PTP,
tyrosine phosphatase, MEG-1, structural genomics
structural genomics consortium, SGC; 2.45A {Homo
sapiens}
Length = 320
Score = 296 bits (760), Expect = 3e-95
Identities = 110/207 (53%), Positives = 145/207 (70%), Gaps = 6/207 (2%)
Query: 496 ALVAQFERLYRKKPGLSMLHANKQENVIKNRYRDISPYDATRVVLHEAPDGDYINANTVA 555
++ QF++LYRKKPG++M A +N+ KNRYRDISPYDATRV+L + DYINAN +
Sbjct: 46 TVLTQFDQLYRKKPGMTMSCAKLPQNISKNRYRDISPYDATRVILK--GNEDYINANYIN 103
Query: 556 MEIPGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHKYWPSLG 615
MEIP S I+N+YIA QGPL T DFW M E GS++VVM+TT VERGR KCH+YWP
Sbjct: 104 MEIPSSSIINQYIACQGPLPHTCTDFWQMTWEQGSSMVVMLTTQVERGRVKCHQYWPEPT 163
Query: 616 ETLELSGGRFNISCAKEEADPSGSFVFREFVLRDSQTGEKRDVTQMQYLAWPDHGVPDDV 675
+ G + ++C EE + +++FR+ L + + E R +TQ+QY+AWPDHGVPDD
Sbjct: 164 GSSSY--GCYQVTCHSEEGNT--AYIFRKMTLFNQEKNESRPLTQIQYIAWPDHGVPDDS 219
Query: 676 NRFLAFTRQVRHERAGMVEPAIVHCSA 702
+ FL F VR++RAG EP +VHCSA
Sbjct: 220 SDFLDFVCHVRNKRAGKEEPVVVHCSA 246
>2b49_A Protein tyrosine phosphatase, non-receptor type 3; human, STRU
genomics, structural genomics consortium, SGC,
hydrolase; 1.54A {Homo sapiens}
Length = 287
Score = 292 bits (750), Expect = 4e-94
Identities = 104/207 (50%), Positives = 141/207 (68%), Gaps = 7/207 (3%)
Query: 496 ALVAQFERLYRKKPGLSMLHANKQENVIKNRYRDISPYDATRVVLHEAPDGDYINANTVA 555
++ QFE+LYRKKPGL++ A +N+ KNRY+D+ PYD TRV+L + DYINA+ V
Sbjct: 19 TVLIQFEQLYRKKPGLAITFAKLPQNLDKNRYKDVLPYDTTRVLLQ--GNEDYINASYVN 76
Query: 556 MEIPGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHKYWPSLG 615
MEIP + +VN+YIATQGPL T FW ++ + +L+VM+TTL ERGRTKCH+YWP
Sbjct: 77 MEIPAANLVNKYIATQGPLPHTCAQFWQVVWDQKLSLIVMLTTLTERGRTKCHQYWPDPP 136
Query: 616 ETLELSGGRFNISCAKEEADPSGSFVFREFVLRDSQTGEKRDVTQMQYLAWPDHGVPDDV 675
+ + G F+I C E+ ++V RE ++ ++QTGE+ VT +QY+AWPDHGVPDD
Sbjct: 137 DVMNH--GGFHIQCQSEDCTI--AYVSREMLVTNTQTGEEHTVTHLQYVAWPDHGVPDDS 192
Query: 676 NRFLAFTRQVRHERAGMVEPAIVHCSA 702
+ FL F VR R EP +VHCSA
Sbjct: 193 SDFLEFVNYVRSLRVDS-EPVLVHCSA 218
>1l8k_A T-cell protein-tyrosine phosphatase; hydrolase; 2.56A {Homo
sapiens} SCOP: c.45.1.2
Length = 314
Score = 280 bits (718), Expect = 5e-89
Identities = 65/206 (31%), Positives = 99/206 (48%), Gaps = 9/206 (4%)
Query: 499 AQFERLYRKKPGLSMLHANKQENVIKNRYRDISPYDATRVVLHEAPDGDYINANTVAMEI 558
+ + + A EN +NRYRD+SPYD +RV L + DYINA+ +
Sbjct: 20 PLYLEIRNESHDYPHRVAKFPENRNRNRYRDVSPYDHSRVKLQN-AENDYINASL----V 74
Query: 559 PGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHKYWPSLGETL 618
YI TQGPL +T FW M+ + + VVM+ +VE+ KC +YWP+ + +
Sbjct: 75 DIEEAQRSYILTQGPLPNTCCHFWLMVWQQKTKAVVMLNRIVEKESVKCAQYWPTDDQEM 134
Query: 619 ELSGGRFNISCAKEEADPSGSFVFREFVLRDSQTGEKRDVTQMQYLAWPDHGVPDDVNRF 678
F++ E+ + L + +GE R ++ Y WPD GVP+ F
Sbjct: 135 LFKETGFSVKLLSEDVKS--YYTVHLLQLENINSGETRTISHFHYTTWPDFGVPESPASF 192
Query: 679 LAFTRQVRHERAGMVE--PAIVHCSA 702
L F +VR + + PA++HCSA
Sbjct: 193 LNFLFKVRESGSLNPDHGPAVIHCSA 218
>2cm2_A Tyrosine-protein phosphatase non-receptor type 1; polymorphism,
phosphorylation, endoplasmic reticulum, oxidation,
hydrolase, acetylation; 1.5A {Homo sapiens} SCOP:
c.45.1.2 PDB: 2cm3_A 2cmb_A* 2cmc_A* 2cne_A* 3a5j_A
2cma_A 3a5k_A 3eu0_A 3sme_A 2azr_A* 2b07_A* 2h4g_A*
2h4k_A* 2hb1_A* 2qbp_A* 2qbq_A* 2qbr_A* 2qbs_A* 2zmm_A*
2zn7_A* ...
Length = 304
Score = 279 bits (715), Expect = 9e-89
Identities = 71/209 (33%), Positives = 103/209 (49%), Gaps = 10/209 (4%)
Query: 497 LVAQFERLYRKKPGLSMLHANKQENVIKNRYRDISPYDATRVVLHEAPDGDYINANTVAM 556
A ++ + + A +N +NRYRD+SP+D +R+ LH+ D DYINA+
Sbjct: 22 WAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ-EDNDYINASL--- 77
Query: 557 EIPGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHKYWPSLGE 616
I YI TQGPL +T G FW M+ E S VVM+ ++E+G KC +YWP E
Sbjct: 78 -IKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEE 136
Query: 617 -TLELSGGRFNISCAKEEADPSGSFVFREFVLRDSQTGEKRDVTQMQYLAWPDHGVPDDV 675
+ ++ E+ + R+ L + T E R++ Y WPD GVP+
Sbjct: 137 KEMIFEDTNLKLTLISEDIKS--YYTVRQLELENLTTQETREILHFHYTTWPDFGVPESP 194
Query: 676 NRFLAFTRQVRHERAGMVE--PAIVHCSA 702
FL F +VR + E P +VHCSA
Sbjct: 195 ASFLNFLFKVRESGSLSPEHGPVVVHCSA 223
>1wch_A Protein tyrosine phosphatase, non-receptor type 13; hydrolase,
phosphate ION, colorectal cancer alternative splicing,
coiled coil, cytoskeleton; 1.85A {Homo sapiens} SCOP:
c.45.1.2
Length = 315
Score = 279 bits (715), Expect = 1e-88
Identities = 77/206 (37%), Positives = 106/206 (51%), Gaps = 8/206 (3%)
Query: 497 LVAQFERLYRKKPGLSMLHANKQENVIKNRYRDISPYDATRVVLHEAPDGDYINANTVAM 556
+ E L KP L +EN KNRY++I PYDATRV L +G YINA+ + +
Sbjct: 51 PSKELENLQELKPLDQCLIGQTKENRRKNRYKNILPYDATRVPLG--DEGGYINASFIKI 108
Query: 557 EIPGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHKYWPSLGE 616
+ YIA QGPL +TVGDFW M+ E ST++ M+T VE + KC +YWP++
Sbjct: 109 PVGKEE--FVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPNILG 166
Query: 617 TLELSGGRFNISCAKEEADPSGSFVFREFVLRDSQTGEKRDVTQMQYLAWPDHGVPDDVN 676
+ R ++ + + FV R L D QT E R ++ + + AWPDH P +
Sbjct: 167 KTTMVSNRLRLALVRMQQLK--GFVVRAMTLEDIQTREVRHISHLNFTAWPDHDTPSQPD 224
Query: 677 RFLAFTRQVRHERAGMVEPAIVHCSA 702
L F +RH P I HCSA
Sbjct: 225 DLLTFISYMRHIHRS--GPIITHCSA 248
>2bzl_A Tyrosine-protein phosphatase, non-receptor type 14; PTPN14,
hydrolase; 1.65A {Homo sapiens}
Length = 325
Score = 278 bits (712), Expect = 5e-88
Identities = 73/222 (32%), Positives = 112/222 (50%), Gaps = 17/222 (7%)
Query: 494 EWALVAQFERLYRKKPGLSMLHANKQENVIKNRYRDISPYDATRVVLHEA--PDGDYINA 551
E + ++E++ +KK A EN ++R R++ PY+ RV L + YINA
Sbjct: 44 EGMVFTEYEQIPKKKANGIFSTAALPENAERSRIREVVPYEENRVELIPTKENNTGYINA 103
Query: 552 NTVAMEIPGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHKYW 611
+ + + + G+ YIATQGPL T DFW M+ E G ++ MVT E GRTK H+YW
Sbjct: 104 SHIKVVVGGA--EWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYW 161
Query: 612 PSLGETLELSG-GRFNISCAKEEADPSGSFVFREFVLRDSQTGEKRDVTQMQYLAWPDHG 670
P LG + G+F ++ S + ++ +G++R V +QY WPDHG
Sbjct: 162 PKLGSKHSSATYGKFKVTTKFRT--DSVCYATTGLKVKHLLSGQERTVWHLQYTDWPDHG 219
Query: 671 VPDDVNRFLAFTRQVRHERAGMVE----------PAIVHCSA 702
P+DV FL++ +++ R P +VHCSA
Sbjct: 220 CPEDVQGFLSYLEEIQSVRRHTNSMLEGTKNRHPPIVVHCSA 261
>2oc3_A Tyrosine-protein phosphatase non-receptor type 18; protein tyrosine
phosphatase, human, structural genomics, structural
genomics consortium, SGC; 1.50A {Homo sapiens}
Length = 303
Score = 274 bits (704), Expect = 4e-87
Identities = 76/216 (35%), Positives = 108/216 (50%), Gaps = 12/216 (5%)
Query: 490 GWTGEWALVAQFERLYRKKPGLSMLHANKQENVIKNRYRDISPYDATRVVLHEA---PDG 546
GE++ + ++ S + ++ ENV KNRY+D+ PYD TRV+L
Sbjct: 29 VLAGEFSDIQACSAAWKADGVCSTVAGSRPENVRKNRYKDVLPYDQTRVILSLLQEEGHS 88
Query: 547 DYINANTVAMEIPGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTK 606
DYIN N I G YIATQGPL T+ DFW ++ E G +++M +E GR +
Sbjct: 89 DYINGNF----IRGVDGSLAYIATQGPLPHTLLDFWRLVWEFGVKVILMACREIENGRKR 144
Query: 607 CHKYWPSLGETLELSGGRFNISCAKEEADPSGSFVFREFVLRDSQTGEKRDVTQMQYLAW 666
C +YW E L+ G F I+ KE+ + + R + E R V Q+QY++W
Sbjct: 145 CERYWAQEQEPLQT--GLFCITLIKEK-WLNEDIMLRTLKVT--FQKESRSVYQLQYMSW 199
Query: 667 PDHGVPDDVNRFLAFTRQVRHERAGMVEPAIVHCSA 702
PD GVP + LA + R + EP VHCSA
Sbjct: 200 PDRGVPSSPDHMLAMVEEARRLQGSGPEPLCVHCSA 235
>2hc1_A Receptor-type tyrosine-protein phosphatase beta; protein tyrosine
phosphatase, WPD-loop, sulfamic acid, inhibitor, drug
design, hydrolase; 1.30A {Homo sapiens} PDB: 2h03_A
2hc2_A 2i4g_A* 2h04_A* 2h02_A 2i3u_A 2i3r_A 2i4e_A*
2i4h_A* 2i5x_A* 2ahs_A
Length = 291
Score = 273 bits (701), Expect = 8e-87
Identities = 82/213 (38%), Positives = 102/213 (47%), Gaps = 13/213 (6%)
Query: 493 GEWALVAQFERLYRKKPGLSMLHANKQENVIKNRYRDISPYDATRVVLHEAPDGDYINAN 552
+ L ++E L S A EN KNRY +I PYDATRV L DYINA+
Sbjct: 25 SNYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYNNILPYDATRVKLS--GGSDYINAS 82
Query: 553 TVAMEIPGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHKYWP 612
IPG+ YI TQGPL T DFW M+ E +VMVT VE+GR KC YWP
Sbjct: 83 Y----IPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYWP 138
Query: 613 SLGETLELSGGRFNISCAKEEADPSGSFVFREFVLRD-SQTGEKRDVTQMQYLAWPDHGV 671
+ ++L G + E P + REF + Q R + Y WPDHGV
Sbjct: 139 ADQDSLYY--GDLILQMLSESVLP--EWTIREFKICGEEQLDAHRLIRHFHYTVWPDHGV 194
Query: 672 PDDVNRFLAFTRQVR--HERAGMVEPAIVHCSA 702
P+ + F R VR R+ P +VHCSA
Sbjct: 195 PETTQSLIQFVRTVRDYINRSPGAGPTVVHCSA 227
>2pa5_A Tyrosine-protein phosphatase non-receptor type 9; protein tyrosine
phosphatase, MEG2, PTPN9, structural genomi structural
genomics consortium, SGC; 1.60A {Homo sapiens}
Length = 314
Score = 273 bits (699), Expect = 3e-86
Identities = 70/222 (31%), Positives = 107/222 (48%), Gaps = 23/222 (10%)
Query: 497 LVAQFERLYRKKPGLSMLHANKQENVIKNRYRDISPYDATRVVLHEA---PDGDYINANT 553
+ ++E + R+ P + + N+ KNRY D+ D TRV L + DYINA+
Sbjct: 28 IYEEYEDIRRENPVGTFHCSMSPGNLEKNRYGDVPCLDQTRVKLTKRSGHTQTDYINASF 87
Query: 554 VAMEIPGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHKYWPS 613
+ G N YI TQGPL +T DFW M+ E ++VM T E GR KC +YWP
Sbjct: 88 ----MDGYKQKNAYIGTQGPLENTYRDFWLMVWEQKVLVIVMTTRFEEGGRRKCGQYWPL 143
Query: 614 LGETLELSGGRFNISCAKEEADPSGSFVFREFVLRDSQTGEKRDVTQMQYLAWPDHGVPD 673
++ + G ++ E + + +++ +KR VT Q+L+WPD+GVP
Sbjct: 144 EKDS-RIRFGFLTVTNLGVENMN--HYKKTTLEIHNTEERQKRQVTHFQFLSWPDYGVPS 200
Query: 674 DVNRFLAFTRQVRHERAGMVE-------------PAIVHCSA 702
+ F R VR++++ V P +VHCSA
Sbjct: 201 SAASLIDFLRVVRNQQSLAVSNMGARSKGQCPEPPIVVHCSA 242
>2gjt_A Receptor-type tyrosine-protein phosphatase PTPro; tyrosine
phosphatase, glepp1, PTPU2, structural genom structural
genomics consortium, SGC; 2.15A {Homo sapiens} PDB:
2g59_A 2pi7_A
Length = 295
Score = 271 bits (694), Expect = 8e-86
Identities = 78/215 (36%), Positives = 99/215 (46%), Gaps = 15/215 (6%)
Query: 493 GEWALVAQFERLYRKKPGLSMLHANKQENVIKNRYRDISPYDATRVVLHEA---PDGDYI 549
++ QFE L + A+ N KNRY +I PYD +RV L DYI
Sbjct: 21 SDYKFSLQFEELKLIGLDIPHFAADLPLNRCKNRYTNILPYDFSRVRLVSMNEEEGADYI 80
Query: 550 NANTVAMEIPGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHK 609
NAN IPG YIATQGPL T DFW M+++ S ++VM+T E+ R KC
Sbjct: 81 NANY----IPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDH 136
Query: 610 YWPSLGETLELSGGRFNISCAKEEADPSGSFVFREFVLRDSQTGEKRDVTQMQYLAWPDH 669
YWP E + G + EE + R F + E +DV Y AWPDH
Sbjct: 137 YWPFTEEPIAY--GDITVEMISEEEQD--DWACRHFRIN--YADEMQDVMHFNYTAWPDH 190
Query: 670 GVP--DDVNRFLAFTRQVRHERAGMVEPAIVHCSA 702
GVP + L F VR + P I+HCSA
Sbjct: 191 GVPTANAAESILQFVHMVRQQATKSKGPMIIHCSA 225
>3s3e_A Tyrosine-protein phosphatase 10D; differentiation, neurogenesis,
signal transduction, developm protein, hydrolase; 2.40A
{Drosophila melanogaster} PDB: 3s3f_A 3s3h_A* 3s3k_A*
Length = 307
Score = 271 bits (694), Expect = 1e-85
Identities = 69/209 (33%), Positives = 94/209 (44%), Gaps = 13/209 (6%)
Query: 497 LVAQFERLYRKKPGLSMLHANKQENVIKNRYRDISPYDATRVVLHEA---PDGDYINANT 553
+FE L A+ N KNR+ +I PYD +R L DYINAN
Sbjct: 46 FSEEFEELKHVGRDQPCTFADLPCNRPKNRFTNILPYDHSRFKLQPVDDDEGSDYINANY 105
Query: 554 VAMEIPGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHKYWPS 613
+PG +I TQGPL ST DFW M E+ S +VM+T E+GR KC +YWP+
Sbjct: 106 ----VPGHNSPREFIVTQGPLHSTRDDFWRMCWESNSRAIVMLTRCFEKGREKCDQYWPN 161
Query: 614 LGETLELSGGRFNISCAKEEADPSGSFVFREFVLRDSQTGEKRDVTQMQYLAWPDHGVPD 673
+ G + + +V EF+L + E+R + + WPD GVP+
Sbjct: 162 DTVPVFY--GDIKVQILNDSHYA--DWVMTEFML--CRGSEQRILRHFHFTTWPDFGVPN 215
Query: 674 DVNRFLAFTRQVRHERAGMVEPAIVHCSA 702
+ F R R P +VHCSA
Sbjct: 216 PPQTLVRFVRAFRDRIGAEQRPIVVHCSA 244
>2ooq_A Receptor-type tyrosine-protein phosphatase T; protein tyrosine
phosphatase, human, structural GE structural genomics
consortium, SGC, hydrolase; HET: B3P; 1.80A {Homo
sapiens} PDB: 1rpm_A 2c7s_A
Length = 286
Score = 269 bits (690), Expect = 2e-85
Identities = 79/209 (37%), Positives = 102/209 (48%), Gaps = 14/209 (6%)
Query: 497 LVAQFERLYRKKPGLSMLHANKQENVIKNRYRDISPYDATRVVLHEA---PDGDYINANT 553
++E L + S A + EN KNRY +I YD +RV L P DYINAN
Sbjct: 24 FKEEYEALPEGQTA-SWDTAKEDENRNKNRYGNIISYDHSRVRLLVLDGDPHSDYINANY 82
Query: 554 VAMEIPGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHKYWPS 613
I G YIATQGP+ TV DFW M+ + S +VMVT LVE GR KC +YWP
Sbjct: 83 ----IDGYHRPRHYIATQGPMQETVKDFWRMIWQENSASIVMVTNLVEVGRVKCVRYWPD 138
Query: 614 LGETLELSGGRFNISCAKEEADPSGSFVFREFVLRDSQTGEKRDVTQMQYLAWPDHGVPD 673
E G ++ + E +V R F ++ E R++ + +WPDHGVP
Sbjct: 139 DTEVY----GDIKVTLIETEPLA--EYVIRTFTVQKKGYHEIRELRLFHFTSWPDHGVPC 192
Query: 674 DVNRFLAFTRQVRHERAGMVEPAIVHCSA 702
L F RQV+ P +VHCSA
Sbjct: 193 YATGLLGFVRQVKFLNPPEAGPIVVHCSA 221
>2i1y_A Receptor-type tyrosine-protein phosphatase; receptor-type protein
tyrosine phosphatase precursor, phosph structural
genomics, PSI; 2.23A {Homo sapiens} PDB: 2qep_A
Length = 301
Score = 269 bits (689), Expect = 5e-85
Identities = 76/211 (36%), Positives = 109/211 (51%), Gaps = 13/211 (6%)
Query: 497 LVAQFERL--YRKKPGLSMLHANKQENVIKNRYRDISPYDATRVVLHEA---PDGDYINA 551
L +++ L Y+ +P + A + N+ KNR+ D PYD R+ L DYINA
Sbjct: 31 LAKEWQALCAYQAEPN-TCATAQGEGNIKKNRHPDFLPYDHARIKLKVESSPSRSDYINA 89
Query: 552 NTVAMEIPGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHKYW 611
+ + + YIATQGPL+ T+ DFW M+ E+G T++VM+T LVE G +C +YW
Sbjct: 90 SPIIE---HDPRMPAYIATQGPLSHTIADFWQMVWESGCTVIVMLTPLVEDGVKQCDRYW 146
Query: 612 PSLGETLELSGGRFNISCAKEEADPSGSFVFREFVLRDSQTGEKRDVTQMQYLAWPDHGV 671
P G +L + ++ E F+ R F L++ QT E R +TQ +L+WP G
Sbjct: 147 PDEGASLY---HVYEVNLVSEHIW-CEDFLVRSFYLKNVQTQETRTLTQFHFLSWPAEGT 202
Query: 672 PDDVNRFLAFTRQVRHERAGMVEPAIVHCSA 702
P L F R+V G P IVHCS
Sbjct: 203 PASTRPLLDFRRKVNKCYRGRSCPIIVHCSD 233
>2p6x_A Tyrosine-protein phosphatase non-receptor type 22; tyrosine
phosphatase, lymphoid phosphatase, PEP, LYP, struct
genomics; 1.90A {Homo sapiens} PDB: 3h2x_A 3brh_A
2qct_A* 2qcj_A* 3olr_A* 3omh_A*
Length = 309
Score = 266 bits (682), Expect = 8e-84
Identities = 74/220 (33%), Positives = 104/220 (47%), Gaps = 12/220 (5%)
Query: 486 APVGGWTGEWALVAQFERLYRKKPGLSMLHANKQENVIKNRYRDISPYDATRVVLHEA-- 543
+ E+ + + Y+ A K +N+ KNRY+DI PYD +RV L
Sbjct: 19 ITKEEFANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDILPYDYSRVELSLITS 78
Query: 544 -PDGDYINANTVAMEIPGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVER 602
D YINAN I G YIATQGPL++T+ DFW M+ E ++VM E
Sbjct: 79 DEDSSYINANF----IKGVYGPKAYIATQGPLSTTLLDFWRMIWEYSVLIIVMACMEYEM 134
Query: 603 GRTKCHKYWPSLGETLELSGGRFNISCAKEEADPSGSFVFREFVLRDSQTGEKRDVTQMQ 662
G+ KC +YW GE +L G F++SC E+ ++ R ++ E R + Q
Sbjct: 135 GKKKCERYWAEPGEM-QLEFGPFSVSCEAEKRKS--DYIIRTLKVK--FNSETRTIYQFH 189
Query: 663 YLAWPDHGVPDDVNRFLAFTRQVRHERAGMVEPAIVHCSA 702
Y WPDH VP ++ L VR + P +HCSA
Sbjct: 190 YKNWPDHDVPSSIDPILELIWDVRCYQEDDSVPICIHCSA 229
>3b7o_A Tyrosine-protein phosphatase non-receptor type 11; SHP2, PTPN11,
tyrosine phosphatase, structural genomics, STR genomics
consortium, SGC, deafness; 1.60A {Homo sapiens} PDB:
3jrl_A* 3mow_A* 3o5x_A*
Length = 316
Score = 266 bits (681), Expect = 1e-83
Identities = 87/219 (39%), Positives = 114/219 (52%), Gaps = 17/219 (7%)
Query: 497 LVAQFERLYRK--KPGLSMLHANKQENVIKNRYRDISPYDATRVVLHEA----PDGDYIN 550
+FE L ++ K S +QEN KNRY++I P+D TRVVLH+ P DYIN
Sbjct: 34 FWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYIN 93
Query: 551 ANTVAMEIP----GSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTK 606
AN + E S YIATQG L +TV DFW M+ + S ++VM T VERG++K
Sbjct: 94 ANIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSK 153
Query: 607 CHKYWPSLGETLELSGGRFNISCAKEEADPSGSFVFREFVLRDSQTG-EKRDVTQMQYLA 665
C KYWP E G + KE A + RE L G +R V Q +
Sbjct: 154 CVKYWPDEYALKEY--GVMRVRNVKESAAH--DYTLRELKLSKVGQGNTERTVWQYHFRT 209
Query: 666 WPDHGVPDDVNRFLAFTRQVRHERAGMVE--PAIVHCSA 702
WPDHGVP D L F +V H++ +++ P +VHCSA
Sbjct: 210 WPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSA 248
>1fpr_A Protein-tyrosine phosphatase 1C; protein tyrosine phosphatase,
substrate specificity, residue shift, signaling protein;
HET: PTR; 2.50A {Homo sapiens} SCOP: c.45.1.2 PDB:
1gwz_A
Length = 284
Score = 264 bits (677), Expect = 2e-83
Identities = 75/213 (35%), Positives = 109/213 (51%), Gaps = 14/213 (6%)
Query: 500 QFERLYRK--KPGLSMLHANKQENVIKNRYRDISPYDATRVVLH----EAPDGDYINANT 553
+FE L ++ K L + EN KNRY++I P+D +RV+L P DYINAN
Sbjct: 5 EFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANY 64
Query: 554 VAMEIPGSG-IVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHKYWP 612
+ ++ G YIA+QG L +TV DFW M + S ++VM T VE+GR KC YWP
Sbjct: 65 IKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWP 124
Query: 613 SLGETLELSGGRFNISCAKEEADPSGSFVFREFVLRDSQTGEK-RDVTQMQYLAWPDHGV 671
+G G ++++ E + R + G+ R++ QYL+WPDHGV
Sbjct: 125 EVGMQRAY--GPYSVTNCGEHDTT--EYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGV 180
Query: 672 PDDVNRFLAFTRQVRHERAGMVE--PAIVHCSA 702
P + L+F Q+ + + P IVH SA
Sbjct: 181 PSEPGGVLSFLDQINQRQESLPHAGPIIVHSSA 213
>3i36_A Vascular protein tyrosine phosphatase 1; PTP, hydrolase; 1.84A
{Rattus norvegicus} PDB: 2nz6_A 2cfv_A
Length = 342
Score = 266 bits (681), Expect = 3e-83
Identities = 77/210 (36%), Positives = 108/210 (51%), Gaps = 13/210 (6%)
Query: 497 LVAQFERLYRKKPGLSMLHANKQENVIKNRYRDISPYDATRVVLHEA--PDGDYINANTV 554
++E L L A EN KNRY ++ PYD +RV L DYINAN
Sbjct: 46 FAEEYEDLKLIGISLPKYAAEIAENRGKNRYNNVLPYDISRVKLSVQTHSTDDYINANY- 104
Query: 555 AMEIPGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHKYWPSL 614
+PG +IATQGPL +T+ DFW M+ E +VM+T VE+GRTKC +YWPS
Sbjct: 105 ---MPGYHSKKDFIATQGPLPNTLKDFWRMVWEKNVYAIVMLTKCVEQGRTKCEEYWPS- 160
Query: 615 GETLELSGGRFNISCAKEEADPSGSFVFREFVLRDSQTGEKRDVTQMQYLAWPDHGVPDD 674
+ + G ++ E P + R+FV+++ Q+ E + Q + +WPDHGVPD
Sbjct: 161 KQAQDY--GDITVAMTSEVVLP--EWTIRDFVVKNMQSSESHPLRQFHFTSWPDHGVPDT 216
Query: 675 VNRFLAFTRQVRHERAGMVE--PAIVHCSA 702
+ + F VR + P +VHCSA
Sbjct: 217 TDLLINFRYLVRDYMKQIPPESPILVHCSA 246
>1yfo_A D1, receptor protein tyrosine phosphatase alpha; hydrolase, signal
transduction, glycoprotein, phosphorylation, signal;
2.25A {Mus musculus} SCOP: c.45.1.2
Length = 302
Score = 262 bits (673), Expect = 1e-82
Identities = 73/213 (34%), Positives = 100/213 (46%), Gaps = 16/213 (7%)
Query: 497 LVAQFERLYRKKPGLSMLHANKQENVIKNRYRDISPYDATRVVLHEA---PDGDYINANT 553
+F L + A+K+EN KNRY +I PYD +RV L PD DYINA+
Sbjct: 31 FREEFNALPACPIQATCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPDSDYINASF 90
Query: 554 VAMEIPGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHKYWPS 613
I G N++IA QGP TV DFW M+ E + +VMVT L ER KC +YWP
Sbjct: 91 ----INGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPD 146
Query: 614 LGETLELSGGRFNISCAKEEADPSGSFVFREFVLRD----SQTGEKRDVTQMQYLAWPDH 669
G G +S + R+F ++ + +R +TQ + +WPD
Sbjct: 147 QG-CWTY--GNVRVSVEDVTVLV--DYTVRKFCIQQVGDVTNRKPQRLITQFHFTSWPDF 201
Query: 670 GVPDDVNRFLAFTRQVRHERAGMVEPAIVHCSA 702
GVP L F ++V+ +VHCSA
Sbjct: 202 GVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSA 234
>3m4u_A Tyrosine specific protein phosphatase, putative; protein tyrosine
phosphatase, hydrolase; 2.39A {Trypanosoma brucei}
Length = 306
Score = 261 bits (670), Expect = 4e-82
Identities = 57/218 (26%), Positives = 91/218 (41%), Gaps = 19/218 (8%)
Query: 497 LVAQFERLYRKKPGLSMLHANKQENVIKNRYRDISPYDATRVVL------HEAPDGDYIN 550
+ +F +L R++ ++ +N KNRY DI + T + YIN
Sbjct: 21 MQREFVQLQRQENPRNINFTTSLKNRHKNRYLDILANEETIYPPVLKAVGAQPGRYPYIN 80
Query: 551 ANTVAMEIPGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHKY 610
N + +++P + ++A Q P+ V DF L E LVVM+T L E G K +Y
Sbjct: 81 GNLIDLDLP-----HTFVACQAPVPQGVPDFLETLSEKKVDLVVMLTKLREGGVLKAERY 135
Query: 611 WPSLGETLELSG----GRFNISCAKEEADP--SGSFVFREFVLRDSQTGEKRDVTQMQYL 664
WP E ++ E + + + R ++ V Q+QY+
Sbjct: 136 WPEEEEDSLSFPESGHDAIKVTRDAEASYEVDAELDIVRRPLVIHVPGKPMHRVLQVQYV 195
Query: 665 AWPDHGVPDDVNRFLAFTRQVRHERAGMVEPAIVHCSA 702
WPDHGVP+ F +++ P +VHCSA
Sbjct: 196 GWPDHGVPESAASFDELLSVIKNCVTT--SPILVHCSA 231
>1ygr_A CD45 protein tyrosine phosphatase; protein tyrosine phosphatase,
RPTP, LCA, lymphocyte activation, hydrolase; HET: PTR;
2.90A {Homo sapiens} PDB: 1ygu_A*
Length = 610
Score = 269 bits (689), Expect = 2e-81
Identities = 74/210 (35%), Positives = 105/210 (50%), Gaps = 11/210 (5%)
Query: 497 LVAQFERLYRKKPGLSMLHANKQENVIKNRYRDISPYDATRVVLHEA---PDGDYINANT 553
+A+F+ + R + A K N KNRY DI PYD RV L E +YINA+
Sbjct: 30 FLAEFQSIPRVFSKFPIKEARKPFNQNKNRYVDILPYDYNRVELSEINGDAGSNYINASY 89
Query: 554 VAMEIPGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHKYWPS 613
I G +YIA QGP TV DFW M+ E +T++VMVT E R KC +YWPS
Sbjct: 90 ----IDGFKEPRKYIAAQGPRDETVDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWPS 145
Query: 614 LGETLELSGGRFNISCAKEEADPSGSFVFREFVL-RDSQTGEKRDVTQMQYLAWPDHGVP 672
+ E G + + + P ++ ++ + + R+VT +Q+ +WPDHGVP
Sbjct: 146 MEEGTRAFGD-VVVKINQHKRCP--DYIIQKLNIVNKKEKATGREVTHIQFTSWPDHGVP 202
Query: 673 DDVNRFLAFTRQVRHERAGMVEPAIVHCSA 702
+D + L R+V P +VH SA
Sbjct: 203 EDPHLLLKLRRRVNAFSNFFSGPIVVHSSA 232
Score = 225 bits (574), Expect = 8e-65
Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 42/236 (17%)
Query: 499 AQFERLYRKKPGLSMLHANKQENVIKNRYRDISPYDATRVVLHEA--------------- 543
A+F+RL + + N++EN KNR ++ PYD RV L
Sbjct: 323 AEFQRLPSYRSWRTQHIGNQEENKSKNRNSNVIPYDYNRVPLKHELEMSKESEHDSDESS 382
Query: 544 -------PDGDYINANTVAMEIPGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMV 596
YINA+ I IA QGPL T+GDFW M+ + ++VM+
Sbjct: 383 DDDSDSEEPSKYINASF----IMSYWKPEVMIAAQGPLKETIGDFWQMIFQRKVKVIVML 438
Query: 597 TTLVERGRTKCHKYWPSLGETLELSGGRFNISCAKEEADPSGSFVFREFVLRDSQTGEKR 656
T L + C +YW +T G + + ++ R F LR S+ + R
Sbjct: 439 TELKHGDQEICAQYWGEGKQTY----GDIEVDLKDTDKSS--TYTLRVFELRHSKRKDSR 492
Query: 657 DVTQMQYLAWPDHGVPDDVNRFLAFTRQVRH----------ERAGMVEPAIVHCSA 702
V Q QY W +P + ++ + V+ + P ++HC
Sbjct: 493 TVYQYQYTNWSVEQLPAEPKELISMIQVVKQKLPQKNSSEGNKHHKSTPLLIHCRD 548
>2h4v_A Receptor-type tyrosine-protein phosphatase gamma; tyrosine receptor
phosphatase, human, structural GENO structural genomics
consortium, SGC; HET: FLC; 1.55A {Homo sapiens} PDB:
3qcd_A 3qcc_A 3qcb_A 3qce_A* 3qcf_A* 3qcg_A* 3qch_A*
3qci_A* 3qcj_A* 3qck_A* 2pbn_A 2hy3_A 3qcm_A* 3qcl_A*
3qcn_A
Length = 320
Score = 259 bits (663), Expect = 7e-81
Identities = 76/224 (33%), Positives = 105/224 (46%), Gaps = 27/224 (12%)
Query: 497 LVAQFERLYRKKPGL--SMLHANKQENVIKNRYRDISPYDATRVVLH-----EAPDGDYI 549
FE + R + + H+N EN KNRY +I YD +RV L ++ DYI
Sbjct: 41 FSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYI 100
Query: 550 NANTVAMEIPGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHK 609
NAN + G YIATQGPL ST DFW M+ E + ++VM+T LVE+GR KC +
Sbjct: 101 NANY----VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQ 156
Query: 610 YWPSLGETLELSGGRFNISCAKEEADPSGSFVFREFVLRDSQTG-----------EKRDV 658
YWP+ G ++ + + R F +R+++ +R V
Sbjct: 157 YWPTENSEEY---GNIIVTLKSTKIHA--CYTVRRFSIRNTKVKKGQKGNPKGRQNERVV 211
Query: 659 TQMQYLAWPDHGVPDDVNRFLAFTRQVRHERAGMVEPAIVHCSA 702
Q Y WPD GVP+ L F R+ R P +VHCSA
Sbjct: 212 IQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSA 255
>1p15_A Protein-tyrosine phosphatase alpha; transmembrane, hydrolase,
phosphorylation; 2.00A {Mus musculus} SCOP: c.45.1.2
Length = 253
Score = 255 bits (653), Expect = 3e-80
Identities = 65/194 (33%), Positives = 97/194 (50%), Gaps = 13/194 (6%)
Query: 513 MLHANKQENVIKNRYRDISPYDATRVVLHE---APDGDYINANTVAMEIPGSGIVNRYIA 569
M N N+ KNR I PY+ RV++ + DY+NA+ I G + YIA
Sbjct: 1 MRTGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEENTDYVNASF----IDGYRQKDSYIA 56
Query: 570 TQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHKYWPSLGETLELSGGRFNISC 629
+QGPL T+ DFW M+ E S +VM+T L ERG+ KC +YWPS G G +
Sbjct: 57 SQGPLLHTIEDFWRMIWEWKSCSIVMLTELEERGQEKCAQYWPSDGLVSY---GDITVEL 113
Query: 630 AKEEADPSGSFVFREFVLRDSQTGEKRDVTQMQYLAWPDHGVPDDVNRFLAFTRQVRHER 689
KEE S+ R+ ++ +++ + R + Q + WP+ G+P D + V+ ++
Sbjct: 114 KKEEECE--SYTVRDLLVTNTRENKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQ 171
Query: 690 AGMVE-PAIVHCSA 702
P VHCSA
Sbjct: 172 QQSGNHPITVHCSA 185
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics
conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A
2he7_A 2rq1_A
Length = 296
Score = 252 bits (646), Expect = 7e-79
Identities = 101/234 (43%), Positives = 145/234 (61%), Gaps = 26/234 (11%)
Query: 2 NFYFRVKFYVSDPSKLQEEYTRYHFYLQIRKDILAHRLILAPSTACLLASYTVQCNTYIS 61
NF F VKFY DP++L E+ TRY+ LQ+R+DI+A RL + +T LL SYT+Q
Sbjct: 89 NFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQ------ 142
Query: 62 ENFLSLEIMADTKLVWFSISAELGDYHPDEHKPGYLSGLSLVPGQTEEMELKIEELHKLH 121
+ELGDY P+ H Y+S L P QT+E+E K+ ELHK +
Sbjct: 143 --------------------SELGDYDPELHGVDYVSDFKLAPNQTKELEEKVMELHKSY 182
Query: 122 KGQSPADAEYNYLEHAKRCEMYGVSVHGAKDSQDRDIQLGVTANGLVIFHAGARLNLLSW 181
+ +PA A+ +LE+AK+ MYGV +H AKD + DI LGV ++GL+++ R+N W
Sbjct: 183 RSMTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPW 242
Query: 182 VKIVKISFKRKQFFVQLKREPSENYDTLLGFNMTTYRSCKNLWKSCVEHHTFFR 235
K++KIS+KR FF++++ E Y++ +GF + +YR+ K LWK CVEHHTFFR
Sbjct: 243 PKVLKISYKRSSFFIKIRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFFR 296
>2jjd_A Receptor-type tyrosine-protein phosphatase epsilo; transmembrane,
phosphoprotein, consorti structural, glycoprotein, SGC,
PTPRE, membrane genomics; 3.20A {Homo sapiens}
Length = 599
Score = 262 bits (671), Expect = 9e-79
Identities = 73/212 (34%), Positives = 100/212 (47%), Gaps = 15/212 (7%)
Query: 497 LVAQFERLYRKKPGLSMLHANKQENVIKNRYRDISPYDATRVVLHEA---PDGDYINANT 553
+F L + ANK+EN KNRY +I P D +RV+L + P DYINA+
Sbjct: 30 FREEFNSLPSGHIQGTFELANKEENREKNRYPNILPNDHSRVILSQLDGIPCSDYINASY 89
Query: 554 VAMEIPGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHKYWPS 613
I G N++IA QGP TV DFW M+ E S +VM+T L ER KCH+YWP
Sbjct: 90 ----IDGYKEKNKFIAAQGPKQETVNDFWRMVWEQKSATIVMLTNLKERKEEKCHQYWPD 145
Query: 614 LGETLELSGGRFNISCAKEEADPSGSFVFREFVLRD---SQTGEKRDVTQMQYLAWPDHG 670
G G + + R+F ++ R V+Q+ + +WPD G
Sbjct: 146 QG-CWTY--GNIRVCVEDCVVLV--DYTIRKFCIQPQLPDGCKAPRLVSQLHFTSWPDFG 200
Query: 671 VPDDVNRFLAFTRQVRHERAGMVEPAIVHCSA 702
VP L F ++V+ P +VHCSA
Sbjct: 201 VPFTPIGMLKFLKKVKTLNPVHAGPIVVHCSA 232
Score = 237 bits (606), Expect = 2e-69
Identities = 68/222 (30%), Positives = 100/222 (45%), Gaps = 19/222 (8%)
Query: 491 WTGEWALVAQFERLYRKKP-GLSMLHANKQENVIKNRYRDISPYDATRVVL---HEAPDG 546
+ L +F +L + +M N N+ K R I PYD RV+L
Sbjct: 315 HFDKIGLEEEFRKLTNVRIMKENMRTGNLPANMKKARVIQIIPYDFNRVILSMKRGQEYT 374
Query: 547 DYINANTVAMEIPGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTK 606
DYINA+ I G + +IATQGPLA TV DFW M+ E S +VM+T + ER + K
Sbjct: 375 DYINASF----IDGYRQKDYFIATQGPLAHTVEDFWRMIWEWKSHTIVMLTEVQEREQDK 430
Query: 607 CHKYWPSLGETLELSGGRFNISCAKEEADPSGSFVFREFVLR-----DSQTGEKRDVTQM 661
C++YWP+ G G I + + R+F++ Q + R V Q
Sbjct: 431 CYQYWPTEGSVTH---GEITIEIKNDTLSE--AISIRDFLVTLNQPQARQGEQVRVVRQF 485
Query: 662 QYLAWPDHGVPDDVNRFLAFTRQVRHERAGMVE-PAIVHCSA 702
+ WP+ G+P + + V+ ++ P VHCSA
Sbjct: 486 HFHGWPEIGIPAEGKGMIDLIAAVQKQQQQTGNHPITVHCSA 527
>1lar_A Protein (LAR); tyrosine phosphatease, LAR protein, hydrolase; 2.00A
{Homo sapiens} SCOP: c.45.1.2 c.45.1.2 PDB: 2fh7_A
2nv5_A
Length = 575
Score = 261 bits (669), Expect = 1e-78
Identities = 79/209 (37%), Positives = 112/209 (53%), Gaps = 13/209 (6%)
Query: 497 LVAQFERLYRKKPGLSMLHANKQENVIKNRYRDISPYDATRVVLHE---APDGDYINANT 553
++E + + + ++N + N KNRY ++ YD +RV+L P DYINAN
Sbjct: 20 FSQEYESIDPGQQ-FTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPGSDYINANY 78
Query: 554 VAMEIPGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHKYWPS 613
I G N YIATQGPL T+GDFW M+ E + VVM+T L E+ R KC +YWP+
Sbjct: 79 ----IDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPA 134
Query: 614 LGETLELSGGRFNISCAKEEADPSGSFVFREFVLRDSQTGEKRDVTQMQYLAWPDHGVPD 673
G + G ++ ++ R F L S + EKR++ Q Q++AWPDHGVP+
Sbjct: 135 RGTE---TCGLIQVTLLDTVELA--TYTVRTFALHKSGSSEKRELRQFQFMAWPDHGVPE 189
Query: 674 DVNRFLAFTRQVRHERAGMVEPAIVHCSA 702
LAF R+V+ P +VHCSA
Sbjct: 190 YPTPILAFLRRVKACNPLDAGPMVVHCSA 218
Score = 233 bits (595), Expect = 4e-68
Identities = 81/209 (38%), Positives = 106/209 (50%), Gaps = 15/209 (7%)
Query: 500 QFERLYRKKPGLS-MLHANKQENVIKNRYRDISPYDATRVVL---HEAPDGDYINANTVA 555
+F+ L K S + AN N KNR +I PY+ TRV L DYINA+
Sbjct: 310 EFKLLASSKAHTSRFISANLPCNKFKNRLVNIMPYELTRVCLQPIRGVEGSDYINASF-- 367
Query: 556 MEIPGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHKYWPSLG 615
+ G YIATQGPLA + DFW ML E ST++VM+T L E GR KCH+YWP+
Sbjct: 368 --LDGYRQQKAYIATQGPLAESTEDFWRMLWEHNSTIIVMLTKLREMGREKCHQYWPAER 425
Query: 616 ETLELSGGRFNISCAKEEADPSGSFVFREFVLRDSQTGEKRDVTQMQYLAWPDHGVPDDV 675
F + E P ++ REF + D++ G+ R + Q Q+ WP+ GVP
Sbjct: 426 ---SARYQYFVVDPMAEYNMP--QYILREFKVTDARDGQSRTIRQFQFTDWPEQGVPKTG 480
Query: 676 NRFLAFTRQVR--HERAGMVEPAIVHCSA 702
F+ F QV E+ G P VHCSA
Sbjct: 481 EGFIDFIGQVHKTKEQFGQDGPITVHCSA 509
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine
phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo
sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 256 bits (656), Expect = 3e-77
Identities = 81/256 (31%), Positives = 122/256 (47%), Gaps = 14/256 (5%)
Query: 457 GAPLPIRTRVFTSRGGLNARQCRGPVPVDAPVGGWTGEWALVAQFERLYRKK--PGLSML 514
GA + +R + +R + R T + +FE L +++ L
Sbjct: 204 GAFVYLRQPYYATRVNAADIENRVLELNKKQESEDTAKAGFWEEFESLQKQEVKNLHQRL 263
Query: 515 HANKQENVIKNRYRDISPYDATRVVLH----EAPDGDYINANTVAMEIPGSG-IVNRYIA 569
+ EN KNRY++I P+D +RV+L P DYINAN + ++ G YIA
Sbjct: 264 EGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIA 323
Query: 570 TQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHKYWPSLGETLELSGGRFNISC 629
+QG L +TV DFW M + S ++VM T VE+GR KC YWP +G G ++++
Sbjct: 324 SQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAY--GPYSVTN 381
Query: 630 AKEEADPSGSFVFREFVLRDSQTGEK-RDVTQMQYLAWPDHGVPDDVNRFLAFTRQVRHE 688
E + R + G+ R++ QYL+WPDHGVP + L+F Q+
Sbjct: 382 CGEHDTT--EYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQR 439
Query: 689 RAGMVE--PAIVHCSA 702
+ + P IVHCSA
Sbjct: 440 QESLPHAGPIIVHCSA 455
Score = 59.1 bits (143), Expect = 3e-09
Identities = 12/103 (11%), Positives = 22/103 (21%), Gaps = 12/103 (11%)
Query: 607 CHKYWPSLGETLELSGGRFNISCAKEEADPSGSFVFREFVLRDSQTGEKRDVTQMQYLAW 666
Y G + G ++ + G+ + Q + W
Sbjct: 76 VEYYTQQQGVLQDRDGTIIHLK----YPLNCSDPTSERWYHGHMSGGQAETLLQAKGEPW 131
Query: 667 PDHGVPDD-------VNRFLAFTRQVRHERAGMVEPAIVHCSA 702
V + V L+ + V V C
Sbjct: 132 -TFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEG 173
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
d.93.1.1 d.93.1.1
Length = 525
Score = 255 bits (653), Expect = 6e-77
Identities = 87/216 (40%), Positives = 115/216 (53%), Gaps = 17/216 (7%)
Query: 500 QFERLYRKKPGL--SMLHANKQENVIKNRYRDISPYDATRVVLHEA----PDGDYINANT 553
+FE L +++ L S +QEN KNRY++I P+D TRVVLH+ P DYINAN
Sbjct: 250 EFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANI 309
Query: 554 VAMEIP----GSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHK 609
+ E S YIATQG L +TV DFW M+ + S ++VM T VERG++KC K
Sbjct: 310 IMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVK 369
Query: 610 YWPSLGETLELSGGRFNISCAKEEADPSGSFVFREFVLRDSQTG-EKRDVTQMQYLAWPD 668
YWP E G + KE A + RE L G +R V Q + WPD
Sbjct: 370 YWPDEYALKEY--GVMRVRNVKESAAH--DYTLRELKLSKVGQGNTERTVWQYHFRTWPD 425
Query: 669 HGVPDDVNRFLAFTRQVRHERAGMVE--PAIVHCSA 702
HGVP D L F +V H++ +++ P +VHCSA
Sbjct: 426 HGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSA 461
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 254 bits (650), Expect = 8e-76
Identities = 75/222 (33%), Positives = 111/222 (50%), Gaps = 14/222 (6%)
Query: 491 WTGEWALVAQFERLYRKK--PGLSMLHANKQENVIKNRYRDISPYDATRVVLH----EAP 544
T + +FE L +++ L + EN KNRY++I P+D +RV+L P
Sbjct: 238 DTAKAGFWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIP 297
Query: 545 DGDYINANTVAMEIPGSG-IVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERG 603
DYINAN + ++ G YIA+QG L +TV DFW M + S ++VM T VE+G
Sbjct: 298 GSDYINANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKG 357
Query: 604 RTKCHKYWPSLGETLELSGGRFNISCAKEEADPSGSFVFREFVLRDSQTGEK-RDVTQMQ 662
R KC YWP +G G ++++ E + R + G+ R++ Q
Sbjct: 358 RNKCVPYWPEVGMQRAY--GPYSVTNCGEHDTT--EYKLRTLQVSPLDNGDLIREIWHYQ 413
Query: 663 YLAWPDHGVPDDVNRFLAFTRQVRHERAGMVE--PAIVHCSA 702
YL+WPDHGVP + L+F Q+ + + P IVH SA
Sbjct: 414 YLSWPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHSSA 455
Score = 59.6 bits (144), Expect = 2e-09
Identities = 14/103 (13%), Positives = 25/103 (24%), Gaps = 12/103 (11%)
Query: 607 CHKYWPSLGETLELSGGRFNISCAKEEADPSGSFVFREFVLRDSQTGEKRDVTQMQYLAW 666
Y G + G ++ +DP + G+ + Q + W
Sbjct: 76 VEYYTQQQGVLQDRDGTIIHLKYPLNCSDP----TSERWYHGHMSGGQAETLLQAKGEPW 131
Query: 667 PDHGVPDD-------VNRFLAFTRQVRHERAGMVEPAIVHCSA 702
V + V L+ + V V C
Sbjct: 132 -TFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEG 173
>2nlk_A Protein tyrosine phosphatase, receptor type, G VA (fragment);
PTPRG, R-PTP gamma, protein tyrosine phosphatase gamma,
D3S1 HPTPG, RPTPG, PTPG; 2.40A {Homo sapiens}
Length = 627
Score = 254 bits (651), Expect = 1e-75
Identities = 76/224 (33%), Positives = 105/224 (46%), Gaps = 27/224 (12%)
Query: 497 LVAQFERLYRKKPGL--SMLHANKQENVIKNRYRDISPYDATRVVL-----HEAPDGDYI 549
FE + R + + H+N EN KNRY +I YD +RV L ++ DYI
Sbjct: 23 FSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYI 82
Query: 550 NANTVAMEIPGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHK 609
NAN + G YIATQGPL ST DFW M+ E + ++VM+T LVE+GR KC +
Sbjct: 83 NANY----VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQ 138
Query: 610 YWPSLGETLELSGGRFNISCAKEEADPSGSFVFREFVLRDSQT-----------GEKRDV 658
YWP+ G ++ + + R F +R+++ +R V
Sbjct: 139 YWPTENSEEY---GNIIVTLKSTKIHA--CYTVRRFSIRNTKVKKGQKGNPKGRQNERVV 193
Query: 659 TQMQYLAWPDHGVPDDVNRFLAFTRQVRHERAGMVEPAIVHCSA 702
Q Y WPD GVP+ L F R+ R P +VHCSA
Sbjct: 194 IQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSA 237
Score = 228 bits (583), Expect = 6e-66
Identities = 51/210 (24%), Positives = 80/210 (38%), Gaps = 16/210 (7%)
Query: 500 QFERLYRKKP-GLSMLHANKQENVIKNRYRDISPYDATRVVL---HEAPDGDYINANTVA 555
QF+ + + + A K+ N KNR + P + RV L DYINA+
Sbjct: 328 QFKLVTQCNAKYVECFSAQKECNKEKNRNSSVVPSERARVGLAPLPGMKGTDYINASY-- 385
Query: 556 MEIPGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHKYWPSLG 615
I G N +I TQ PL T DFW M+ + + ++VM+ YWPS
Sbjct: 386 --IMGYYRSNEFIITQHPLPHTTKDFWRMIWDHNAQIIVMLPDNQSLAE-DEFVYWPSRE 442
Query: 616 ETLELSGGRFNISCAKEE---ADPSGSFVFREFVLRDSQTGEKRDVTQMQYLAWPDHGVP 672
E++ F ++ ++ + +F+L +Q +V Q WP+ P
Sbjct: 443 ESMNC--EAFTVTLISKDRLCLSNEEQIIIHDFILEATQDDYVLEVRHFQCPKWPNPDAP 500
Query: 673 DDVNRFLAFTRQVRHERAGMVEPAIVHCSA 702
++ E P IVH
Sbjct: 501 ISS--TFELINVIKEEALTRDGPTIVHDEY 528
>1jln_A STEP-like ptpase, protein tyrosine phosphatase, receptor type, R;
PTP-SL, PTPBR7, ERK2-MAP kinase regulation, hydrolase;
1.81A {Mus musculus} SCOP: c.45.1.2 PDB: 2a8b_A
Length = 297
Score = 243 bits (623), Expect = 2e-75
Identities = 65/213 (30%), Positives = 91/213 (42%), Gaps = 22/213 (10%)
Query: 497 LVAQFERLYRKKPGLSMLHANKQENVIKNRYRDISPYDATRVVLHEA----PDGDYINAN 552
L ++F + + + + KNRY+ I P +RV L YINAN
Sbjct: 34 LQSEFMEI--PMNFVDPKEIDIPRHGTKNRYKTILPNPLSRVCLRPKNITDSLSTYINAN 91
Query: 553 TVAMEIPG-SGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHKYW 611
I G SG +IATQGP+ +TV DFW M+ + S ++VM+T L E+ KC YW
Sbjct: 92 Y----IRGYSGKEKAFIATQGPMINTVNDFWQMVWQEDSPVIVMITKLKEKNE-KCVLYW 146
Query: 612 PSLGETLELSGGRFNISCAKEEADPSGSFVFREFVLRDSQTGEKRDVTQMQYLAWPDHGV 671
P G+ + ++ R VL+ Q + V Y +WPDH
Sbjct: 147 PEKRGIY----GKVEVLVTGVTECD--NYTIRNLVLK--QGSHTQHVKHYWYTSWPDHKT 198
Query: 672 PDDVNRFLAFTRQVRHERAGMVE--PAIVHCSA 702
PD L V +R P +VHCSA
Sbjct: 199 PDSAQPLLQLMLDVEEDRLASEGRGPVVVHCSA 231
>1zc0_A Tyrosine-protein phosphatase, non-receptor type 7; heptp, human
tyrosine phosphatase catalytic domain, LC-PTP,
hydrolase; 1.85A {Homo sapiens} PDB: 2gp0_A 2qdc_A
2hvl_A 2qdp_A 2qdm_A 3o4s_A 3o4t_A* 3o4u_A* 3d44_A*
3d42_A* 2a3k_A
Length = 309
Score = 241 bits (617), Expect = 3e-74
Identities = 74/210 (35%), Positives = 102/210 (48%), Gaps = 19/210 (9%)
Query: 500 QFERLYRKKPG--LSMLHANKQENVIKNRYRDISPYDATRVVLHEA---PDGDYINANTV 554
Q E + K P +S + + K+RY+ I P +RV L A DGDYINAN +
Sbjct: 45 QLEEEFLKIPSNFVSPEDLDIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYI 104
Query: 555 AMEIPGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHKYWPSL 614
G YIATQGP+ +TV DFW M+ + +L+VM+T L E G+ KC YWP+
Sbjct: 105 RGY---DGKEKVYIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLRE-GKEKCVHYWPTE 160
Query: 615 GETLELSGGRFNISCAKEEADPSGSFVFREFVLRDSQTGEKRDVTQMQYLAWPDHGVPDD 674
ET G F I + P + R+ ++ E+R V + + AWPDH P+
Sbjct: 161 EETY----GPFQIRIQDMKECP--EYTVRQLTIQ--YQEERRSVKHILFSAWPDHQTPES 212
Query: 675 VNRFLAFTRQVR--HERAGMVEPAIVHCSA 702
L +V E A P +VHCSA
Sbjct: 213 AGPLLRLVAEVEESPETAAHPGPIVVHCSA 242
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein,
cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Length = 314
Score = 232 bits (592), Expect = 1e-70
Identities = 72/252 (28%), Positives = 118/252 (46%), Gaps = 44/252 (17%)
Query: 3 FYFRVKFYVSDPS-KLQEEYTRYHFYLQIRKDILAHRLILAPSTACLLASYTVQCNTYIS 61
F+F KFY + +L +E T++ F+LQ++K IL ++ P + LLASY VQ
Sbjct: 95 FHFLAKFYPENAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQ------ 148
Query: 62 ENFLSLEIMADTKLVWFSISAELGDYHPDEHKPGYLSGLSLVPGQT--------EEMELK 113
A+ GDY P HK G+L+ L+P + E E +
Sbjct: 149 --------------------AKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEER 188
Query: 114 IEELHKLHKGQSPADAEYNYLEHAKRCEMYGVSVHGAKDSQDRDIQLGVTANGLVIFHAG 173
I + H+G++ +AE YL+ A+ EMYGV+ ++ + ++ LGV A GL I+
Sbjct: 189 ITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKGTELLLGVDALGLHIYDPE 248
Query: 174 ARLNLL---SWVKIVKISFKRKQFFVQLKREPSENYDTLLGFNMTTYRSCKNLWKSCVEH 230
RL W +I IS+ K+F + +P + + FN + R K + + C+ +
Sbjct: 249 NRLTPKISFPWNEIRNISYSDKEFTI----KPLDKKIDVFKFNSSKLRVNKLILQLCIGN 304
Query: 231 HTFFRLHSPRRS 242
H F R++
Sbjct: 305 HDLFMRR--RKA 314
>2cjz_A Human protein tyrosine phosphatase PTPN5; protein phosphatase,
STEP, hydrolase; HET: PTR; 1.70A {Homo sapiens} PDB:
2bij_A 2bv5_A*
Length = 305
Score = 227 bits (582), Expect = 2e-69
Identities = 63/214 (29%), Positives = 86/214 (40%), Gaps = 21/214 (9%)
Query: 496 ALVAQFERLYRKKPGLSMLHANKQENVIKNRYRDISPYDATRVVLHEA----PDGDYINA 551
L A+F + + V KNRY+ I P +RV L P YINA
Sbjct: 41 LLQAEFFEIPMNFV--DPKEYDIPGLVRKNRYKTILPNPHSRVCLTSPDPDDPLSSYINA 98
Query: 552 NTVAMEIPGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHKYW 611
N + G YIATQGP+ STV DFW M+ + + ++VM+T + E KC +YW
Sbjct: 99 NYIRGY---GGEEKVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIEE-MNEKCTEYW 154
Query: 612 PSLGETLELSGGRFNISCAKEEADPSGSFVFREFVLRDSQTGEKRDVTQMQYLAWPDHGV 671
P I+ K + R L+ E+R + + +WPD
Sbjct: 155 PEEQVAY----DGVEITVQKVIHTE--DYRLRLISLK--SGTEERGLKHYWFTSWPDQKT 206
Query: 672 PDDVNRFLAFTRQVRHERAGMVE---PAIVHCSA 702
PD L R+V P IVH SA
Sbjct: 207 PDRAPPLLHLVREVEEAAQQEGPHCAPIIVHSSA 240
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A
{Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB:
1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A
2zpy_A 1gc7_A 1gc6_A 1ni2_A
Length = 294
Score = 218 bits (557), Expect = 6e-66
Identities = 73/247 (29%), Positives = 113/247 (45%), Gaps = 42/247 (17%)
Query: 2 NFYFRVKFYVSDPSK-LQEEYTRYHFYLQIRKDILAHRLILAPSTACLLASYTVQCNTYI 60
F FR KFY D S+ L ++ T+ F+LQ+++ IL + P TA LLASY VQ
Sbjct: 74 LFKFRAKFYPEDVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQ----- 128
Query: 61 SENFLSLEIMADTKLVWFSISAELGDYHPDEHKPGYLSGLSLVPGQT--------EEMEL 112
++ GD++ + HK GYL+G L+P + ++ E
Sbjct: 129 ---------------------SKYGDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEE 167
Query: 113 KIEELHKLHKGQSPADAEYNYLEHAKRCEMYGVSVHGAKDSQDRDIQLGVTANGLVIFHA 172
+I+ H+ H+G DA YL+ A+ EMYGV+ K+ + ++ LGV A GL I+
Sbjct: 168 RIQVWHEEHRGMLREDAVLEYLKIAQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYEQ 227
Query: 173 GARLNLL---SWVKIVKISFKRKQFFVQLKREPSENYDTLLGFNMTTYRSCKNLWKSCVE 229
RL W +I ISF K+F + +P + F R K + C+
Sbjct: 228 NDRLTPKIGFPWSEIRNISFNDKKFVI----KPIDKKAPDFVFYAPRLRINKRILALCMG 283
Query: 230 HHTFFRL 236
+H +
Sbjct: 284 NHELYMR 290
>1lyv_A Protein-tyrosine phosphatase YOPH; toxin, hydrolase; 1.36A
{Yersinia enterocolitica} SCOP: c.45.1.2 PDB: 1qz0_A*
1ytn_A 1ytw_A 2i42_A 2y2f_A* 2ydu_A* 1xxp_A* 3blu_A*
1ypt_A* 3blt_A* 1xxv_A* 3f9b_A 3f9a_A 3f99_A 3bm8_A*
1pa9_A* 1yts_A
Length = 306
Score = 218 bits (556), Expect = 2e-65
Identities = 42/255 (16%), Positives = 75/255 (29%), Gaps = 39/255 (15%)
Query: 469 SRGGLNARQCRGPVPVDAPVGGWTGEWALVAQFERLYRKKPGLSM--LHANKQENVIKNR 526
+ G A + R P G L ++ L + + NR
Sbjct: 7 TSGHHGAGEARATAPSTVSPYGPEARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNR 66
Query: 527 YRDISPYDATRVVLHEAPDGDYINANTVAMEIPGSGIVNRYIATQGPLASTVGDFWHMLV 586
+RDI T V +NAN + + R IA Q PL S + + ML
Sbjct: 67 FRDIQCRRQTAVRA-------DLNANYIQVG------NTRTIACQYPLQSQLESHFRMLA 113
Query: 587 EAGSTLVVMVTTLVERGRTKC--HKYWPSLGETLELSGGRFNISCAK-EEADPSGSFVFR 643
E + ++ ++ + E + Y+ G G + ++ +
Sbjct: 114 ENRTPVLAVLASSSEIANQRFGMPDYFRQSGTY-----GSITVESKMTQQVGLGDGIMAD 168
Query: 644 EFVLRDSQTG-EKRDVTQMQYLAWPDHGVP--DDVNRFLAFTRQVRHERAGMVE------ 694
+ L + G + V + WPD + + Q + M E
Sbjct: 169 MYTLTIREAGQKTISVPVVHVGNWPDQTAVSSEVTKALASLVDQTAETKRNMYESKGSSA 228
Query: 695 -------PAIVHCSA 702
++H A
Sbjct: 229 VADDSKLRPVIHSRA 243
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 220 bits (562), Expect = 1e-63
Identities = 71/282 (25%), Positives = 117/282 (41%), Gaps = 43/282 (15%)
Query: 3 FYFRVKFYVSD-PSKLQEEYTRYHFYLQIRKDILAHRLILAPSTACLLASYTVQCNTYIS 61
F FR KFY D +L +E T FYLQ++ IL+ + P T+ LLASY VQ
Sbjct: 78 FKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASYAVQ------ 131
Query: 62 ENFLSLEIMADTKLVWFSISAELGDYHPDEHKPGYLSGLSLVPGQT--------EEMELK 113
A GD++P H PG+L+ L+P + EE E
Sbjct: 132 --------------------ARHGDHNPAVHGPGFLANDRLLPQRVTDQHKMSREEWEQS 171
Query: 114 IEELHKLHKGQSPADAEYNYLEHAKRCEMYGVSVHGAKDSQDRDIQLGVTANGLVIFHAG 173
I + H+G DA YL+ A+ EMYGV+ ++ ++ ++ LGV A GL I+
Sbjct: 172 ITNWWQEHRGMLREDAMMEYLKIAQDLEMYGVNYFEIRNKKNTELWLGVDALGLNIYEKD 231
Query: 174 ARLNLL---SWVKIVKISFKRKQFFVQLKREPSENYDTLLGFNMTTYRSCKNLWKSCVEH 230
+L W +I ISF ++F ++ + + ++ F R K + C+ +
Sbjct: 232 DKLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDF----VFFAPRVRVNKRILALCMGN 287
Query: 231 HTFFRLHSPRRSRKFLPPPLSLGSKFFSSGRTEYQTYQQARR 272
H + + + + + + + + Q
Sbjct: 288 HELYMRRRKPDTIDVQQMK-AQAREEKLAKQAQREKLQLEIA 328
>1g4w_R Protein tyrosine phosphatase SPTP; virulence factor, GTPase
activating protein, 4-helix bundle, disorder, signaling
protein; 2.20A {Salmonella typhimurium} SCOP: a.24.11.1
c.45.1.2 PDB: 1g4u_S
Length = 383
Score = 208 bits (530), Expect = 7e-61
Identities = 30/216 (13%), Positives = 71/216 (32%), Gaps = 25/216 (11%)
Query: 497 LVAQFERLYRKKPGLSMLHANKQENVIKNRYRDISPYDATRVVLHEAPDGDYINANTVAM 556
+ A+ E++ P + + + + I T+V L DG + N +
Sbjct: 123 VTAELEKIEAGAP-MPQTMSGPTLGLARFAVSSIPINQQTQVKLS---DGMPVPVN--TL 176
Query: 557 EIPGSGIVNRYIATQGP--LASTVGDFWHMLVEAGSTLVVMVTTLVERGRTKCHKYWPSL 614
G +A P + ML+E + +V++T+ + + + P
Sbjct: 177 TFDGK---PVALAGSYPKNTPDALEAHMKMLLEKECSCLVVLTSEDQM---QAKQLPPYF 230
Query: 615 GETLELSGGRFNISCAKEEADPSGSFVFREFVLRDSQTGEKRDVTQMQYLAWPDHGVPDD 674
+ G + + K + G ++ ++ S ++ + + WPDH
Sbjct: 231 RGSYTF--GEVHTNSQKVSSASQG-EAIDQYNMQLSCGEKRYTIPVLHVKNWPDHQPLPS 287
Query: 675 VNRFLAFTRQVRHERAGMVE--------PAIVHCSA 702
++ +V++ ++HC
Sbjct: 288 TDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLG 323
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton,
M phosphoprotein, cell adhesion, structural protein;
1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Length = 371
Score = 198 bits (505), Expect = 2e-57
Identities = 43/243 (17%), Positives = 84/243 (34%), Gaps = 43/243 (17%)
Query: 2 NFYFRVKFYVSDPS-KLQEEYTRYHFYLQIRKDILAHRLILAPSTACLLASYTVQCNTYI 60
R KF+ SD + ++ Y+Q R DIL ++ AC A + Q
Sbjct: 161 TLLLRRKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQ----- 215
Query: 61 SENFLSLEIMADTKLVWFSISAELGDYHPDEHKPGYLSGLSLVPGQ--TEEMELKIEELH 118
+ G ++ +HK G+L +P + ++ E KI + H
Sbjct: 216 ---------------------IQFGPHNEQKHKAGFLDLKDFLPKEYVKQKGERKIFQAH 254
Query: 119 KLHKGQSPADAEYNYLEHAKRCEMYGVSVHGAKDSQDRDIQ-----LGVTANGLVIFHAG 173
K S +A+ Y++ A+ + YGVS K+ + LG+T ++
Sbjct: 255 KNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEK 314
Query: 174 AR--LNLLSWVKIVKISFKRKQFFVQLKREPSENYDTLLGFNMTTYRSCKNLWKSCVEHH 231
+ + S I + + K F + +++ T + + + +
Sbjct: 315 TKEVIQEWSLTNIKRWAASPKSFTLDFGDYQDGY------YSVQT-TEGEQIAQLIAGYI 367
Query: 232 TFF 234
Sbjct: 368 DII 370
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion;
2.05A {Mus musculus}
Length = 222
Score = 182 bits (464), Expect = 1e-53
Identities = 39/251 (15%), Positives = 78/251 (31%), Gaps = 51/251 (20%)
Query: 3 FYFRVKFYVSDPSKLQEEYTRYHFYLQIRKDILAHRLILAPSTACLLASYTVQCNTYISE 62
++ ++ Y+Q R DIL ++ AC A + Q
Sbjct: 13 LGTENLYF----QSSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQ------- 61
Query: 63 NFLSLEIMADTKLVWFSISAELGDYHPDEHKPGYLSGLSLVPGQ--TEEMELKIEELHKL 120
+ G ++ +HK G+L +P + ++ E KI + HK
Sbjct: 62 -------------------IQFGPHNEQKHKAGFLDLKDFLPKEYVKQKGERKIFQAHKN 102
Query: 121 HKGQSPADAEYNYLEHAKRCEMYGVSVHGAKDSQDRDIQ-----LGVTANGLVIFHA--G 173
S +A+ Y++ A+ + YGVS K+ + LG+T ++
Sbjct: 103 CGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTK 162
Query: 174 ARLNLLSWVKIVKISFKRKQFFVQLKREPSENYDTLLGFNMTTYRSCKNLWKSCVEHHTF 233
+ S I + + K F + Y + + + +
Sbjct: 163 EVIQEWSLTNIKRWAASPKSFTLDFGDYQDGYY-------SVQTTEGEQIAQLIAGYIDI 215
Query: 234 FRLHSPRRSRK 244
+ +K
Sbjct: 216 I-----LKKKK 221
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton,
structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1
b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A
2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Length = 206
Score = 180 bits (458), Expect = 7e-53
Identities = 44/238 (18%), Positives = 83/238 (34%), Gaps = 43/238 (18%)
Query: 7 VKFYVSDPS-KLQEEYTRYHFYLQIRKDILAHRLILAPSTACLLASYTVQCNTYISENFL 65
+KF+ SD + ++ Y+Q R DIL ++ AC A Y Q
Sbjct: 1 MKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQ---------- 50
Query: 66 SLEIMADTKLVWFSISAELGDYHPDEHKPGYLSGLSLVPGQ--TEEMELKIEELHKLHKG 123
+ G ++ +HKPG+L +P + ++ E KI HK
Sbjct: 51 ----------------IQFGPHNEQKHKPGFLELKDFLPKEYIKQKGERKIFMAHKNCGN 94
Query: 124 QSPADAEYNYLEHAKRCEMYGVSVHGAKDSQDRDIQ-----LGVTANGLVIFHA--GARL 176
S +A+ Y++ A+ + YGVS K+ + LG+T ++ +
Sbjct: 95 MSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVI 154
Query: 177 NLLSWVKIVKISFKRKQFFVQLKREPSENYDTLLGFNMTTYRSCKNLWKSCVEHHTFF 234
S I + + K F + +++ T + + + +
Sbjct: 155 QEWSLTNIKRWAASPKSFTLDFGDYQDGY------YSVQT-TEGEQIAQLIAGYIDII 205
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein
interaction, GTP binding, CYTO protein binding; HET:
GSP; 1.95A {Homo sapiens}
Length = 322
Score = 133 bits (337), Expect = 9e-35
Identities = 32/241 (13%), Positives = 70/241 (29%), Gaps = 49/241 (20%)
Query: 3 FYFR-VKFYVSDPSKLQEEYTRYHFYLQIRKDILAHRLILAPSTACLLASYTVQCNTYIS 61
F R V+ + ++++ + + R ++L + LAS +Q
Sbjct: 93 FLRRDVRLPLEVEKQIEDPLAILILFDEARYNLLKGFYTAPDAKLITLASLLLQ------ 146
Query: 62 ENFLSLEIMADTKLVWFSISAELGDYHPDEHKPGYLSGLSLVP--------GQTEEMELK 113
G+Y +HK G+L+ +L + +
Sbjct: 147 --------------------IVYGNYESKKHKQGFLNEENLKSIVPVTKLKSKAPHWTNR 186
Query: 114 IEELHKLHKGQSPADAEYN-----YLEHAKRCEMYGVSVHGA--------KDSQDRDIQL 160
I +K E + +L++ YG + + + + +
Sbjct: 187 ILHEYKNLSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFFTGQIFTKASPSNHKVIPVYV 246
Query: 161 GVTANGLVIFHAGARLNLLSWVKIVKISFKRKQFFVQLKREPSENYDTLLGFNMTTYRSC 220
GV GL + + + L+S K ++ + EN + +
Sbjct: 247 GVNIKGLHLLNMETKALLISL-KYGCFMWQLGDTDTCFQIHSMENKMSFIVHTKQAGLVV 305
Query: 221 K 221
K
Sbjct: 306 K 306
>3au4_A Myosin-X; protein-protein complex, motor protein cargo
transportation, protein-apoptosis complex; 1.90A {Homo
sapiens} PDB: 3au5_A 3pzd_A
Length = 555
Score = 101 bits (253), Expect = 9e-23
Identities = 24/227 (10%), Positives = 74/227 (32%), Gaps = 14/227 (6%)
Query: 3 FYFRVKFYVSDPSKLQEEYTRYHFYLQIRKDILAHRLILAPSTACLLASYTVQCNTYISE 62
FYF++ ++ + ++ + Q + ++ +LA+ +Q
Sbjct: 301 FYFKLYCFLDTDNVPKDSVEFAFMFEQAHEAVIHGHHPAPEENLQVLAALRLQYLQGDYT 360
Query: 63 NFLSLEIMADTKLVWFSISAELGDYHPDEHKPGYLSGLSLVP---------GQTEEMELK 113
++ + + + + + G + + +
Sbjct: 361 LHAAIPPLEEVYSLQRLKARISQSTKTFSFRTGSVVRQKVEEEQMLDMWIKEEVSSARAS 420
Query: 114 IEELHKLHKGQSPADAEYNYLEHAKRCEMYGVSVHGAKDSQD---RDIQLGVTANGLVIF 170
I + + +G + A Y+ K YG ++ + + +++ LGV+A+ + ++
Sbjct: 421 IIDKWRKFQGMNQEQAMAKYMALIKEWPGYGSTLFDVECKEGGFPQELWLGVSADAVSVY 480
Query: 171 HAGAR--LNLLSWVKIVKISFKRKQFFVQLKREPSENYDTLLGFNMT 215
G L + + I+ + + E ++T ++
Sbjct: 481 KRGEGRPLEVFQYEHILSFGAPLANTYKIVVDERELLFETSEVVDVA 527
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2,
FERM domain, transferase; 3.25A {Homo sapiens}
Length = 392
Score = 84.9 bits (209), Expect = 1e-17
Identities = 29/278 (10%), Positives = 78/278 (28%), Gaps = 30/278 (10%)
Query: 3 FYFRVKFYVSDPSKLQEE--YTRYHFYLQIRKDILAHRL-ILAPSTACLLASYTVQCNTY 59
+ ++++ D + +E T +FY Q+R D + ++ A L ++
Sbjct: 112 YDLQIRYLPEDFMESLKEDRTTLLYFYQQLRNDYMQRYASKVSEGMALQLGCLELR---R 168
Query: 60 ISENFLSLEIMADTKLVWFSISAELGDYHPDEHKPGYLSGLSLVPGQTEEMELKIEELHK 119
++ + + L + P + + ++ I++ +
Sbjct: 169 FFKDMPHNALDKKSNFELLEKEVGLDLFFPKQM---------QENLKPKQFRKMIQQTFQ 219
Query: 120 LHKGQSPADAEYNYLEHAKRCEMYGVSVHGAKDSQDRDIQ--LGVTANGL--VIFHAGAR 175
+ + + + + Q +I L + G+ +
Sbjct: 220 QYASLREEECVMKFFNTLAGFANIDQETYRCELIQGWNITVDLVIGPKGIRQLTSQDAKP 279
Query: 176 LNLLSWVKIVKISFKRKQFFVQLKREPSENYDTLLGFNMTTYRSCKNLWKSCVEHHTFF- 234
L + +I I + + + E L ++ +N+ +
Sbjct: 280 TCLAEFKQIRSIRCLPLEEGQAVLQLGIEGAPQALSIKTSSLAEAENMADLIDGYCRLQG 339
Query: 235 --------RLHSPRRSRKFLP--PPLSLGSKFFSSGRT 262
R LP P L+L ++ +
Sbjct: 340 EHQGSLIIHPRKDGEKRNSLPQIPMLNLEARRSHLSES 377
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 85.0 bits (209), Expect = 3e-17
Identities = 25/238 (10%), Positives = 62/238 (26%), Gaps = 43/238 (18%)
Query: 3 FYFRVKFYVSDPSKLQEEYTRYHFYLQIRKDILAHRLILAPS-TACLLASYTVQCNTYIS 61
+FR + + + ++ Y Q+ + + LAS
Sbjct: 350 LFFRKEVFTPWHNPSEDNVATNLIYQQVVRGVKFGEYRCEKEDDLAELASQQYF------ 403
Query: 62 ENFLSLEIMADTKLVWFSISAELGDYHPDEHK----PGYLSGLSLVPGQTEEMELKI--- 114
+ G E P Y+ + P + E ++
Sbjct: 404 --------------------VDYGSEMILERLLSLVPTYIPDREITPLKNLEKWAQLAIA 443
Query: 115 --EELHKLHKGQSPADAEYNYLEHAKRC-EMYGVSVHGAKDSQDRDIQ-----LGVTANG 166
++ + + + + +A+ + + A + + V G
Sbjct: 444 AHKKGIYAQRRTDSQKVKEDVVNYARFKWPLLFSRFYEAYKFSGPPLPKSDVIVAVNWTG 503
Query: 167 LVIFHAG-ARLNLLSWVKIVKISFKRKQFFVQLKREPSENYDTLLGFNMTTYRSCKNL 223
+ L LS+ +I+ +S R + + F + ++L
Sbjct: 504 VYFVDEQEQVLLELSFPEIMAVSSSRGTKMMAPSFTLATIKGDEYTFTSSNAEDIRDL 561
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Length = 375
Score = 68.0 bits (165), Expect = 2e-12
Identities = 27/287 (9%), Positives = 80/287 (27%), Gaps = 35/287 (12%)
Query: 3 FYFRVKFYVSDPSKL--QEEYTRYHFYLQIRKDILAHRL-ILAPSTACLLASYTVQCNTY 59
+ R+++ +++ T FY Q++ D + + A L ++ +
Sbjct: 92 YELRIRYLPKGFLNQFTEDKPTLNFFYQQVKNDYMLEIADQVDQEIALKLGCLEIRRS-- 149
Query: 60 ISENFLSLEIMADTKLVWFSISAELGDYHPDEHKPGYLSGLSLVPGQTEEMELKIEELHK 119
+ + A K + + + + L + + + I++ +
Sbjct: 150 ----YGEMRGNALEKKSNYEVLEKDVGLRR------FFPKSLLDSVKAKTLRKLIQQTFR 199
Query: 120 LHKGQSPADAEYNYLEHAKRCEMYGVSVHGAKDSQDRDIQ--LGVTANG---LVIFHAGA 174
+ ++ + E + I L + +
Sbjct: 200 QFANLNREESILKFFEILSPVYRFDKECFKCALGSSWIISVELAIGPEEGISYLTDKGAN 259
Query: 175 RLNLLSWVKIVKISF-----KRKQFFVQLKREPSENYDTLLGFNMTTYRSCKNLWKSCVE 229
+L + ++ I + K ++ +QLK + L + +N+
Sbjct: 260 PTHLADFNQVQTIQYSNSEDKDRKGMLQLKIAGAPEP---LTVTAPSLTIAENMADLIDG 316
Query: 230 HHTFFR-------LHSPRRSRKFLPPPLSLGSKFFSSGRTEYQTYQQ 269
+ + + + LP L + R+ + +
Sbjct: 317 YCRLVNGATQSFIIRPQKEGERALPSIPKLANNEKQGVRSHTVSVSE 363
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.1 bits (158), Expect = 6e-11
Identities = 75/417 (17%), Positives = 123/417 (29%), Gaps = 111/417 (26%)
Query: 328 NAKSSRSLRYDNKVTSLGSREPKRAWDPPHPS-------DDEGGFLDKPPPGSAKLEEGE 380
+A S+R L S GS E P S ++ F P + +
Sbjct: 2 DAYSTRPL-----TLSHGSLEH--VLLVPTASFFIASQLQEQ--FNKILPEPTEGFAADD 52
Query: 381 EAGPAIRTTEPGPAAI--LPARTTLNFVDDDVEED-LEEGLVLIRIAPDEQGRFGFNVKG 437
E P L + L +V VE + + ++ + E F
Sbjct: 53 E-----------PTTPAELVGKF-LGYVSSLVEPSKVGQFDQVLNLCLTE---FENCYLE 97
Query: 438 GADLGMPILVVRGRRRGGRGAPLPIRTRVFTSRGGLNARQCRGPVPVDAPVGG------W 491
G D I + + L + + + AR P D
Sbjct: 98 GND----IHALAAKLLQENDTTLVKTKELI--KNYITARIMAKR-PFDKKSNSALFRAVG 150
Query: 492 TGEWALVAQF-----------E--RLYRK-KPGLSML---HANKQENVIKNRYRDISPYD 534
G LVA F E LY+ + L A +I+ +
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF- 209
Query: 535 ATRVV-----LHE---APDGDYINANTVAMEIPGSGIVN--RYIATQGPLASTVGDFWHM 584
T+ + L PD DY+ + ++ P G++ Y+ T L T G+
Sbjct: 210 -TQGLNILEWLENPSNTPDKDYLLSIPISC--PLIGVIQLAHYVVTAKLLGFTPGELRSY 266
Query: 585 LVEAGSTLV---VMVTTLVERGRTKCHKYWPSLGE----TLELSGGRFNISCAKEEADPS 637
L G+T ++ + + W S + + F I EA P+
Sbjct: 267 L--KGATGHSQGLVTAVAIAETDS-----WESFFVSVRKAITVL---FFIGVRCYEAYPN 316
Query: 638 GSFVFREFVLRDS-QTGEK--------RDVTQMQYLAWPDHGVPDDVNRFLAFTRQV 685
S +L DS + E ++TQ Q + + N L +QV
Sbjct: 317 TS--LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK-----TNSHLPAGKQV 366
Score = 62.0 bits (150), Expect = 5e-10
Identities = 101/608 (16%), Positives = 163/608 (26%), Gaps = 290/608 (47%)
Query: 1 GNF--YFRVKFYVSDPSKLQEEYTRYHFYLQIRKDILAHRLI-LAPSTACLLASYTVQCN 57
GN YF +L++ Y YH + A L L +T +T N
Sbjct: 164 GNTDDYFE---------ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 58 --------------TYISENFLSLEIMADTKLVWFSISAELGDYHPDEHKPGYLSGLSLV 103
Y+ +S ++ +L + ++A+L + P E + YL G
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRS-YLKGA--- 270
Query: 104 PGQTEEMELKIEELHKLHKGQSPADAEYNYLEHAKRCEMYGVSVHGAKDSQDRDIQLGVT 163
+ H + VT
Sbjct: 271 ------------------------------------------TGHSQ------GL---VT 279
Query: 164 ANGLVI--------FHAGAR--LNLLSWVKIVKISFKRKQFFVQLKREPSENYDTL-LGF 212
A + I F R + +L + I + + + PS D+L
Sbjct: 280 A--VAIAETDSWESFFVSVRKAITVLFF-----IGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 213 NMTTY-RSCKNLWKSCVEHHTFFRLHSPRRSRKFLPPPLSLGSKFFSSGRTEYQTYQQAR 271
+ + S NL + V+ + ++ LP +
Sbjct: 333 GVPSPMLSISNLTQEQVQDYV-------NKTNSHLPA--------------------GKQ 365
Query: 272 RSVVLINGCD---VSGMHHEQVVNIIRTSRDTHGELVLTVR----PNGKSRS----TQRS 320
+ L+NG VSG + +G L LT+R P+G +S ++R
Sbjct: 366 VEISLVNGAKNLVVSG-----------PPQSLYG-LNLTLRKAKAPSGLDQSRIPFSERK 413
Query: 321 IQISSDDNAKSSRSLRYDNKVTSLGSREPKRAWDPPHPSDDEGGFLDKPPPGSAKLEEGE 380
++ S+R L V S P H S L
Sbjct: 414 LKF-------SNRFLP----VAS-----------PFH---------------SHLLV--- 433
Query: 381 EAGPAIRTTEPGPAAILPARTTLNFVDDDVEEDLEEGLVLIRIAPDEQGRFGFNVKGGAD 440
PA+ D + +DL + V D
Sbjct: 434 ------------PAS------------DLINKDLVKNNVSFN---------------AKD 454
Query: 441 LGMPILVVRGRRRGGRGAPLPIRTRVFTSRGGLNARQCRGPVP---VDA----PVGGWTG 493
+ +P V+ + G + R G + VD PV
Sbjct: 455 IQIP---------------------VYDTFDGSDLRVLSGSISERIVDCIIRLPV----- 488
Query: 494 EWALVAQFERLY------RKKPGLSML-HANKQENVIKNRYRDISPYDAT--RVV----L 540
+W QF+ + GL +L H NK D T RV+ L
Sbjct: 489 KWETTTQFKATHILDFGPGGASGLGVLTHRNK---------------DGTGVRVIVAGTL 533
Query: 541 HEAPDGDY 548
PD DY
Sbjct: 534 DINPDDDY 541
Score = 59.3 bits (143), Expect = 4e-09
Identities = 87/621 (14%), Positives = 177/621 (28%), Gaps = 211/621 (33%)
Query: 78 FSISAELGDYHPDEHKPGYLSGLSLVPGQTEEMELKIE-----EL---------HKLHKG 123
+ + + + + L P TE E EL +
Sbjct: 20 LLVPTASF-FIASQLQEQFNKIL---PEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS 75
Query: 124 QSPADAE--YNYLEHAKRCEMYGVSVHGAKDSQDRDIQLGVTANGLVI---FHAGARLN- 177
+ + L + C + G +H ++ + +I A
Sbjct: 76 KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 178 ---------LLSWV-----KIVKISF----KRKQFFVQLKREPSENYDTLLG-FNMTTYR 218
L V ++V I F +F +L R+ + Y L+G +
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAI-FGGQGNTDDYFEEL-RDLYQTYHVLVGDLIKFSAE 193
Query: 219 SCKNLWKSCVEHHTFFR--------LHSPRRSRKFLPPPLSLGSKFFS---SGRTEYQTY 267
+ L ++ ++ F L +P + P L S S G
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNT----PDKDYLLSIPISCPLIGVI----- 244
Query: 268 QQARRSVVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRSTQRSIQISSDD 327
Q A V + G ++ + ++ + H + ++T ++ I+
Sbjct: 245 QLAHYVVT----AKLLGFTPGELRSYLKGA-TGHSQGLVT------------AVAIAE-- 285
Query: 328 NAKSSRSLRYDNKVTSL------GSREPKRAWDPPHPSDDEGGFLDKPPPGSAKLEEGEE 381
S S + + ++ G R A+ P+ S PP + LE+ E
Sbjct: 286 -TDSWESF-FVSVRKAITVLFFIGVRC-YEAY--PNTS---------LPP--SILEDSLE 329
Query: 382 AGPAIRTTEPGPAAILPARTTLNFVDDDVEEDLEEGLVLIRIAPDEQGRFGFNVKGGADL 441
E P+ +L N + V++ + + N
Sbjct: 330 NN------EGVPSPMLSIS---NLTQEQVQDYVNK----------------TN------- 357
Query: 442 GMPILVVRGRRRGGRGAPLPIRTRVFTSRGGLNARQCR---GPVPVDAPVGGWTGEWALV 498
+ LP +V S +N + GP P + L
Sbjct: 358 ----------------SHLPAGKQVEISL--VNGAKNLVVSGP-PQSL--------YGLN 390
Query: 499 AQFERLYRKKPGL--SMLHANKQENVIKNRYRDI-----SPY--DATRVVLHEAPDGDYI 549
+ + GL S + ++++ NR+ + S A+ ++ + + +
Sbjct: 391 LTLRKA-KAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN-V 448
Query: 550 NANTVAMEIP------G------SGIVNRYIA---TQGPLASTVGDFWHMLVEAGSTLVV 594
+ N ++IP G SG ++ I + P+ W + +T ++
Sbjct: 449 SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV------KWETTTQFKATHIL 502
Query: 595 --------MVTTLVER---GR 604
+ L R G
Sbjct: 503 DFGPGGASGLGVLTHRNKDGT 523
Score = 34.6 bits (79), Expect = 0.14
Identities = 44/269 (16%), Positives = 82/269 (30%), Gaps = 97/269 (36%)
Query: 211 GFNMTTYRSC---KNLWKSCVEH--HTF-FRLHSPRRSRKFLPPPLSLGSKFF-SSGRTE 263
G M Y++ +++W H T+ F + + P++L F G+
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINN-----PVNLTIHFGGEKGKRI 1684
Query: 264 YQTYQQARRSVVLINGCDVSGMHHEQV---VNIIRTS---RDTHGELVLTVRPNGKSRST 317
+ Y ++ +G + E++ +N TS R G L T + T
Sbjct: 1685 RENYSAMIFETIV-DGKLKT----EKIFKEINEHSTSYTFRSEKGLLSAT-------QFT 1732
Query: 318 QRSIQISSDDNAKS------SRSLRYDNKVT---SLGSREPKRAWDPPHPSDDE------ 362
Q ++ + K+ S+ L + SLG E
Sbjct: 1733 QPALTLME----KAAFEDLKSKGLIPADATFAGHSLG----------------EYAALAS 1772
Query: 363 -GGFLDKPPPGSAKLEE--------GEEAGPAIRTTEPGP-----AAILPARTTLNFVDD 408
+ +E G A+ E G AI P R +F +
Sbjct: 1773 LADVMS--------IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824
Query: 409 DVEEDLEE-----GLVLIRIA----PDEQ 428
++ +E G ++ I ++Q
Sbjct: 1825 ALQYVVERVGKRTGWLV-EIVNYNVENQQ 1852
Score = 30.4 bits (68), Expect = 2.9
Identities = 40/255 (15%), Positives = 68/255 (26%), Gaps = 93/255 (36%)
Query: 141 EMYGVSVHGAKDSQDR-DIQLGVTANGLVIFHAGARLNLLSWVKIVKISFKRK--QFFVQ 197
++Y S A+D +R D G I + IV + F +
Sbjct: 1634 DLYKTSK-AAQDVWNRADNHFK-DTYGFSI------------LDIVINNPVNLTIHFGGE 1679
Query: 198 LKREPSENYDTLLGFNMTTYR-SCKNLWKSCVEHHTFFRLHSPR---------------- 240
+ ENY ++ + + + ++K EH T + S +
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
Query: 241 --------RSRKFLPPP-----LSLGSKFFSSGRTEY----------------------- 264
+S+ +P SLG EY
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSLG---------EYAALASLADVMSIESLVEVVFYRG 1790
Query: 265 QTYQQA------RRSVVLINGCD----VSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKS 314
T Q A RS + + + E + ++ G LV V N
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV--NYNV 1848
Query: 315 RSTQRSIQISSDDNA 329
+ Q + D A
Sbjct: 1849 ENQQ--YVAAGDLRA 1861
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 53.3 bits (128), Expect = 6e-09
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTH-GELVLTVRPN 311
VVLING D++ H+QVV I+ S + H GEL+L VRPN
Sbjct: 69 VVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPN 107
Score = 47.9 bits (114), Expect = 4e-07
Identities = 23/35 (65%), Positives = 27/35 (77%)
Query: 415 EEGLVLIRIAPDEQGRFGFNVKGGADLGMPILVVR 449
+ LVLIR+ PDE GRFGFNVKGG D MP++V R
Sbjct: 15 HDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSR 49
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 52.2 bits (125), Expect = 2e-08
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTH-GELVLTVRPNGKSRSTQRS 320
VVLING D++ H+QVV I+ S + H GEL+L VRPN + S
Sbjct: 67 VVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVVEES 114
Score = 47.6 bits (113), Expect = 6e-07
Identities = 23/35 (65%), Positives = 27/35 (77%)
Query: 415 EEGLVLIRIAPDEQGRFGFNVKGGADLGMPILVVR 449
+ LVLIR+ PDE GRFGFNVKGG D MP++V R
Sbjct: 13 HDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSR 47
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 46.3 bits (110), Expect = 1e-06
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGK 313
++ IN S ++ + +++T G LV+ VR GK
Sbjct: 52 IIAINNTKFSYNDSKEWEEAMAKAQET-GHLVMDVRRYGK 90
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 3e-06
Identities = 42/297 (14%), Positives = 84/297 (28%), Gaps = 83/297 (27%)
Query: 16 KLQEEYTRYHFYLQIRKDILAHRLILAPSTACLLASYTVQCNTYISENFLSLEIM-ADTK 74
+++ + + + D L I+ +S V + F L +
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTT--IIE-------SSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 75 -------LVWFSISAELGDYHPDEHKPGYLSGLSLVPGQTEEMELKIEELHKLHKGQSPA 127
L+WF + ++ L SLV Q +E + I ++ K +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNK-----LHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 128 DAEYNYLEHAKRCEMYGVSVHGAKDSQDRDIQLGVTANGLVIFHAGARLNLLSWVKIVKI 187
+ H + Y ++ DS D + H G L + + ++
Sbjct: 442 EYAL----HRSIVDHY--NIPKTFDSDDLIPP---YLDQYFYSHIGHHLKNIEHPE--RM 490
Query: 188 SFKRKQF----FVQLK--------REPSENYDTLLGFNMTTYRSCKNLWKSCVEHHTFFR 235
+ R F F++ K +TL Y+ +
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK--FYKP-------------YIC 535
Query: 236 LHSPRRSR------KFLPPPLSLGSKFFSSGRTE--------------YQTYQQARR 272
+ P+ R FLP + S T+ + ++Q +R
Sbjct: 536 DNDPKYERLVNAILDFLP---KIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 39.5 bits (91), Expect = 0.005
Identities = 30/236 (12%), Positives = 69/236 (29%), Gaps = 60/236 (25%)
Query: 494 EWALVAQFERLYRKKPGLSMLHANKQENVIKNRYRDISPYDATRV--------VLHEAPD 545
++ L++ + R+ P + +Q + + N + + Y+ +R+ L E
Sbjct: 92 KF-LMSPIKTEQRQ-PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 546 GDYINANTV-AMEIPGSG------IVNRYIATQGPLASTVGDFWHMLVEAGST--LVVMV 596
+ + + GSG V Q + + FW L S ++ M+
Sbjct: 150 AKNV---LIDGV--LGSGKTWVALDVCLSYKVQCKMDFKI--FWLNLKNCNSPETVLEML 202
Query: 597 TTLVERGRTKCHKYWPSLGETLELSGGRFNISCAKEEADPSGSFVFRE-------FVLRD 649
L ++ P+ + S NI + + VL +
Sbjct: 203 QKL-------LYQIDPNWTSRSDHS---SNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 650 ---SQTGEKRDV-------TQMQYLAWPDHGVPDDVNRFLAFTRQVRHERAGMVEP 695
++ ++ T+ V D ++ + H +
Sbjct: 253 VQNAKAWNAFNLSCKILLTTR-------FKQVTDFLSAATTTHISLDHHSMTLTPD 301
Score = 36.4 bits (83), Expect = 0.036
Identities = 97/644 (15%), Positives = 191/644 (29%), Gaps = 210/644 (32%)
Query: 121 HKGQSPADAEYNYLEHAKRCEMYGVSVHGAKDSQD-RDIQ---LGVTANGLV--IF---H 171
H D E ++ + ++ V D+ D +D+Q + + + I
Sbjct: 1 HHHHHHMDFETGEHQYQYK-DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 172 AGARLNLLSWVKIVKISFKRKQFFVQLKREPSENYDTLL----------GFNMTTYRSCK 221
A + L W + K ++F ++ R NY L+ Y +
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRI---NYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 222 N-LWKSCVEHHTFFRLHSPRRSRKFLPPPLSLGSKFFSSGRTEYQTYQQARRSVVLINGC 280
+ L+ + F + + R L P L L R + A+ VLI+G
Sbjct: 117 DRLYND---NQVFAKYNVSR-----LQPYLKL--------RQALLELRPAKN--VLIDGV 158
Query: 281 DVSGMHHEQVVNIIRTSRDTHGELVLTVRPNG------KSRSTQRSI---------QISS 325
SG + V + V K+ ++ ++ QI
Sbjct: 159 LGSG---KTWV-ALDVCLS---YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 326 DDNAKSSRSLRYDNKVTSLGSREPKRAW-DPPHPS-----DD--EGGFLDKPPPGSAKLE 377
+ ++S S ++ S+ + +R P+ + + + L
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAE-LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL- 269
Query: 378 EGEEAGPAIRTTEPGPAAILPARTTLNFVDDDVEEDL--EEGLVL----IRIAPDEQGRF 431
+ T L A TT + D L +E L + P
Sbjct: 270 --------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ----- 316
Query: 432 GFNVKGGADLGMPILVVRGRRRGGRGAPLPIRTRVFTSRGGLNARQCRGPVPVDAPVGGW 491
DL P V+ P + + A R D
Sbjct: 317 --------DL--PREVLTT-------NPRRL---------SIIAESIR-----DGL---- 341
Query: 492 TGEWALVAQFERLYRKKPGLSMLHANKQENVIKNRYRDISPYDATR-----VVLHEAPDG 546
A ++ ++ ++ +K +I++ + P + + V P
Sbjct: 342 -------ATWDN-WKH------VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF---PP- 383
Query: 547 DYINANTVAMEIPGSGIVNRYIATQGPLASTVGDFWHMLVEAGSTLVV---MVTTLVERG 603
+A+ IP + W ++++ +VV +LVE+
Sbjct: 384 ---SAH-----IP---------------TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 604 RTKCHKYWPSLGETLELSG-------------GRFNISCAKEEADPSGSFV---FREFV- 646
+ PS+ LEL +NI + D ++ F +
Sbjct: 421 PKESTISIPSI--YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 647 --LRDSQTGEKRDVTQMQYLAWPDHGVPDDVNRFLAFTRQVRHE 688
L++ + E+ + +M +L D RFL +++RH+
Sbjct: 479 HHLKNIEHPERMTLFRMVFL--------DF--RFLE--QKIRHD 510
Score = 36.0 bits (82), Expect = 0.055
Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 83/313 (26%)
Query: 8 KFYVSDPSKLQ---EEYTRYHF-----YLQIRKDILAHRLILAPSTACLLASYTVQCNTY 59
+ Y+ +L + + +Y+ YL++R+ +L R
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR--------------------- 148
Query: 60 ISENFLSLEIMADT-KLVWFSISAELGDYHPDEHKPGYLSGLSLVPGQTEEMELKIEELH 118
+ ++ + + K W ++ Y + L+L E +E L
Sbjct: 149 -PAKNVLIDGVLGSGK-TWVALDV-CLSYKVQCKMDFKIFWLNL--KNCNSPETVLEMLQ 203
Query: 119 KLHKGQSPADAEYNYLEHAKRCEMYGVSVHGAKDSQDRDIQLGVTANGLVI--------- 169
KL P N+ + + +H + R ++ N L++
Sbjct: 204 KLLYQIDP-----NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 170 ---FHAGARLNLLSWVKIV--KISFKRKQFFVQLKREPSENYDTLLGFNMTTYRSCKNLW 224
F+ ++ L + K V +S + + T K+L
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATT------THISLD--HHSMTL---TPDEVKSLL 307
Query: 225 KSCVEHHTFFRLHSPRRSRKFLPPPLSLGSKFFSSGRTEYQTYQQARRSVVLINGCDVSG 284
++ L PR P LS+ ++ G + ++
Sbjct: 308 LKYLDC-RPQDL--PREVLTTNPRRLSIIAESIRDGLATWDNWKH--------------- 349
Query: 285 MHHEQVVNIIRTS 297
++ +++ II +S
Sbjct: 350 VNCDKLTTIIESS 362
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 43.9 bits (104), Expect = 1e-05
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTV-RPNGKSRSTQRSIQISS 325
V+ I+G GM H + N I+ G L +T+ R + ++S S SS
Sbjct: 53 VLSIDGISAQGMTHLEAQNKIKAC---TGSLNMTLQRASAAAKSEPVSSGPSS 102
Score = 34.3 bits (79), Expect = 0.021
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 431 FGFNVKGGADLGMPILVVR 449
+GF ++GG D MP+ +
Sbjct: 17 WGFRLQGGKDFNMPLTISS 35
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 43.5 bits (103), Expect = 1e-05
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTV-RPNGKSRSTQRSIQISS 325
++ I+G M H + I+ + +L L + R + S Q S SS
Sbjct: 53 ILAIDGFGTESMTHADAQDRIKAA---SYQLCLKIDRAETRLWSPQVSSGPSS 102
Score = 34.6 bits (80), Expect = 0.019
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 421 IRIAPDEQGRFGFNVKGGADLGMPILVVR 449
+ +GF + GG D P+++ R
Sbjct: 7 GNVVLPGPAPWGFRLSGGIDFNQPLVITR 35
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 43.0 bits (102), Expect = 1e-05
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGK 313
VV I+G + M H + N I+++ L LT++ + +
Sbjct: 49 VVAIDGVNTDTMTHLEAQNKIKSA---SYNLSLTLQKSKR 85
Score = 36.1 bits (84), Expect = 0.004
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 423 IAPDEQGRFGFNVKGGADLGMPILVVR 449
+ G +GF ++GG D MP+ + R
Sbjct: 5 VTLTGPGPWGFRLQGGKDFNMPLTISR 31
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 43.2 bits (102), Expect = 1e-05
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRP 310
++ ING V HE++V+I+ + GE+ + P
Sbjct: 55 IIEINGQSVVATPHEKIVHILSNAV---GEIHMKTMP 88
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 42.8 bits (101), Expect = 2e-05
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRSTQRS 320
V+ ING V H QVV ++R S ++ + L V ++
Sbjct: 50 VLRINGVFVDKEEHAQVVELVRKSGNS---VTLLVLDGDSYEKAVKN 93
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 42.3 bits (100), Expect = 3e-05
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 415 EEGLVLIRIAPDEQGRFGFNVKGGADLGMPILVVR 449
+ + +R+ GR GF+V+GG++ G+ I V +
Sbjct: 8 SDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSK 42
Score = 40.8 bits (96), Expect = 1e-04
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRST 317
+ +NG + V ++ +S L + VR G S+
Sbjct: 60 ITEVNGLSLESTTMGSAVKVLTSS----SRLHMMVRRMGSGPSS 99
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 41.9 bits (99), Expect = 3e-05
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPN 311
ING +V G+ Q+ +I+ TS + +T+ P
Sbjct: 50 INGQNVIGLKDSQIADILSTSGTV---VTITIMPA 81
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 43.3 bits (102), Expect = 3e-05
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 8/44 (18%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRSTQRS 320
+NG +VSG +QV +++ + L++TVRP + QR+
Sbjct: 93 VNGIEVSGKSLDQVTDMMIANS---RNLIITVRP-----ANQRN 128
Score = 28.7 bits (64), Expect = 3.5
Identities = 7/46 (15%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 400 RTTLNFVDDDVEEDLEEGLVLIRIAPDEQGRFGFNVKGGADLGMPI 445
R + +D D+ + + L + ++ GF ++ G+ + +
Sbjct: 15 RPVSSIIDVDILPETHRRVRLCKYGTEKP--LGFYIRDGSSVRVTP 58
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 42.0 bits (99), Expect = 3e-05
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTV-RPNGKS 314
+ I+G + S M H + N I+ L LTV R +S
Sbjct: 51 ITAIDGENTSNMTHLEAQNRIKGC---TDNLTLTVARSEHES 89
Score = 37.7 bits (88), Expect = 0.001
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 418 LVLIRIAPDEQGRFGFNVKGGADLGMPILVVRGRRRG 454
+ +I G +GF + GG D P+ + R
Sbjct: 2 MTTQQIDLQGPGPWGFRLVGGKDFEQPLAISRVTPGS 38
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 42.2 bits (100), Expect = 3e-05
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKS 314
+ ING M H + N I+ H L L+V S
Sbjct: 56 IQAINGESTELMTHLEAQNRIKGC---HDHLTLSVSSGPSS 93
Score = 33.8 bits (78), Expect = 0.029
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 431 FGFNVKGGADLGMPILVVRGRRRG 454
+GF + GG D P+ + R
Sbjct: 20 WGFRLVGGRDFSAPLTISRVHAGS 43
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 42.5 bits (100), Expect = 4e-05
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRP 310
V+ ING V H QVV ++R S ++ + L V
Sbjct: 62 VLRINGVFVDKEEHAQVVELVRKSGNS---VTLLVLD 95
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 41.5 bits (98), Expect = 4e-05
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
V+ I+G + + H + N IR L L +
Sbjct: 51 VLSIDGENAGSLTHIEAQNKIRAC---GERLSLGLS 83
Score = 35.0 bits (81), Expect = 0.011
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 421 IRIAPDEQGRFGFNVKGGADLGMPILVVR 449
++ + +GF ++GG D +P+ + R
Sbjct: 5 FKVVLEGPAPWGFRLQGGKDFNVPLSISR 33
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 42.4 bits (100), Expect = 4e-05
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRS 316
ING ++ G +V +++ G L + P+ S
Sbjct: 76 INGIEIRGKDVNEVFDLLSDMH---GTLTFVLIPSSGPSS 112
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 41.5 bits (98), Expect = 6e-05
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRS 316
+V ING M H + + IR S L L + + S
Sbjct: 54 IVAINGQSAENMLHAEAQSKIRQS---ASPLRLQLDRSSGPSS 93
Score = 34.6 bits (80), Expect = 0.017
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 421 IRIAPDEQGRFGFNVKGGADLGMPILVVRGRRRG 454
+ + +GF + GG D PI+V + RG
Sbjct: 8 LTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERG 41
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 41.6 bits (98), Expect = 6e-05
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKS 314
++ +N + E+ V+I+R + D+ L +TV S
Sbjct: 54 ILQMNNEPAEDLSWERAVDILREAEDS---LSITVVRCTSS 91
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 41.1 bits (97), Expect = 7e-05
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
V+ I+G + GM H + N I+ G L +T++
Sbjct: 51 VLSIDGINAQGMTHLEAQNKIKGC---TGSLNMTLQ 83
Score = 33.8 bits (78), Expect = 0.027
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 431 FGFNVKGGADLGMPILVVRGRRRG 454
+GF ++GG D MP+ + + G
Sbjct: 15 WGFRLQGGKDFNMPLTISSLKDGG 38
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 42.3 bits (99), Expect = 7e-05
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRSTQRS 320
++ +NG +V + H QVVN+IR +T L++ V + +
Sbjct: 89 LIEVNGQNVVKVGHRQVVNMIRQGGNT---LMVKVVMVTRHPDMDEA 132
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 42.1 bits (99), Expect = 8e-05
Identities = 11/59 (18%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRSTQRSIQISSDDNAKSS 332
++ +NG + H++ V ++++S L+LTV+ G+ + ++ + + S
Sbjct: 70 ILEVNGRSFLNILHDEAVRLLKSS----RHLILTVKDVGRLPHARTTVDETKWIASSSG 124
Score = 37.1 bits (86), Expect = 0.004
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 421 IRIAPDEQGRFGFNVKGGADLGMPILVVR 449
+ + + G ++GGA+ G+ I +
Sbjct: 24 VNLVLGDGRSLGLTIRGGAEYGLGIYITG 52
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 41.7 bits (98), Expect = 9e-05
Identities = 6/44 (13%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRSTQRS 320
I+G + + ++ ++ L + P +S+ R
Sbjct: 70 IDGTSMEHCSLLEATKLL---ASISEKVRLEILPVPQSQRPLRP 110
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 40.8 bits (96), Expect = 9e-05
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRS 316
+NG V E+++ I+ S+ G + + P K +
Sbjct: 56 VNGIPVEDKRPEEIIQILAQSQ---GAITFKIIPGSKEET 92
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 40.9 bits (96), Expect = 1e-04
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRP 310
+ ING V G+ H VV ++ S + ++ L
Sbjct: 58 ITHINGESVLGLVHMDVVELLLKSGN---KISLRTTA 91
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 40.3 bits (95), Expect = 1e-04
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
+V ING GM H + + IR S L L +
Sbjct: 50 IVAINGESAEGMLHAEAQSKIRQS---PSPLRLQLD 82
Score = 33.8 bits (78), Expect = 0.023
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 431 FGFNVKGGADLGMPILVVR 449
+GF + GG D PI+V +
Sbjct: 14 WGFRITGGRDFHTPIMVTK 32
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 41.0 bits (96), Expect = 1e-04
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
V+ ING E+ ++R S T ++ L +
Sbjct: 70 VMAINGIPTEDSTFEEANQLLRDSSIT-SKVTLEIE 104
Score = 29.0 bits (65), Expect = 2.2
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 421 IRIAPDEQGRFGFNVKGGAD----LGMPILVVR 449
+ + D FG ++G L P L+
Sbjct: 19 VVLTADPVTGFGIQLQGSVFATETLSSPPLISY 51
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 40.6 bits (95), Expect = 1e-04
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRP 310
++ +NG +V + H QVVN+IR +T L++ V
Sbjct: 69 LIEVNGQNVVKVGHRQVVNMIRQGGNT---LMVKVVM 102
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 40.9 bits (96), Expect = 2e-04
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRS 316
+NG + M H +V +I+ + + + L + P + S
Sbjct: 71 VNGQSIINMPHADIVKLIKDAGLS---VTLRIIPQEELNS 107
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 40.1 bits (94), Expect = 2e-04
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRP 310
+ +NG +V G+ H ++V+II+ S + L L
Sbjct: 61 IASVNGLNVEGIRHREIVDIIKASGN---VLRLETLY 94
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 40.0 bits (94), Expect = 2e-04
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRSTQRSIQISS 325
VV +NG V + H+ VV +IR D + L V ++ S SS
Sbjct: 54 VVAVNGKSVEALDHDGVVEMIRKGGD---QTTLLVLD-KEAESIYSLSGPSS 101
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 40.1 bits (94), Expect = 2e-04
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTV 308
+ ING G ++QVV++IR+S + L +
Sbjct: 72 LANINGVSTEGFTYKQVVDLIRSSGN---LLTIET 103
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 40.7 bits (95), Expect = 2e-04
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRST 317
++ +NG V G + QV+ +I+ S T L L+V P S+
Sbjct: 85 IIKVNGESVIGKTYSQVIALIQNSDTT---LELSVMPKDSGPSS 125
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 40.2 bits (94), Expect = 3e-04
Identities = 8/48 (16%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGEL-VLTVRPNGKSRSTQRS 320
+V I G D + +V+ ++++ E+ V+++ + S +
Sbjct: 60 IVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLLDSTSSMHNKSG 107
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 40.2 bits (94), Expect = 3e-04
Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRSTQRSIQISSDDNAKSSR 333
+N + + ++ + ++R +VL +R + +T + D K+ R
Sbjct: 54 VNDRPLVDLSYDSALEVLRGIASE-THVVLILRG-PEGFTTHLETTFTGDGTPKTIR 108
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 39.2 bits (92), Expect = 3e-04
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRP 310
VV +NG V + H+ VV +IR D + L V
Sbjct: 53 VVAVNGKSVEALDHDGVVEMIRKGGD---QTTLLVLD 86
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 39.2 bits (92), Expect = 3e-04
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
+V +N +V + H QVV+++ S E+ L V+
Sbjct: 49 IVEVNKKNVQALTHNQVVDMLVES-PKGSEVTLLVQ 83
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 39.7 bits (93), Expect = 3e-04
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRP 310
++ +NG +V G H+QVV++IR EL+LTV
Sbjct: 67 ILEVNGVNVEGATHKQVVDLIRAGEK---ELILTVLS 100
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 39.1 bits (92), Expect = 3e-04
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRP 310
++ +N +V HE VV +I L + +
Sbjct: 47 ILAVNEINVKKASHEDVVKLIGKCSGV---LHMVIAE 80
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 38.9 bits (91), Expect = 4e-04
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTV-RPNGKS 314
V+ +N V ++ + IR+ E++L V R +G S
Sbjct: 60 VLQLNERPVEHWKCVELAHEIRSCPS---EIILLVWRVSGPS 98
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 38.8 bits (91), Expect = 5e-04
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGK 313
+NG DV + V+++I+ + + L ++ K
Sbjct: 65 LNGKDVRNSTEQAVIDLIKEADFK---IELEIQTFDK 98
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 39.4 bits (92), Expect = 5e-04
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
++ +NG ++ H++ V I+ R GE+ V
Sbjct: 78 ILAVNGVNLRDTKHKEAVTILSQQR---GEIEFEVV 110
Score = 37.8 bits (88), Expect = 0.002
Identities = 9/52 (17%), Positives = 24/52 (46%)
Query: 398 PARTTLNFVDDDVEEDLEEGLVLIRIAPDEQGRFGFNVKGGADLGMPILVVR 449
++ + +E +G+ + + ++ G ++ GG + G+PIL+
Sbjct: 8 HHHSSGHIEGRHMENLYFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISE 59
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 38.9 bits (91), Expect = 5e-04
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRP 310
++ +NG ++ H++ V I+ R GE+ V
Sbjct: 60 ILAVNGVNLRDTKHKEAVTILSQQR---GEIEFEVVY 93
Score = 32.3 bits (74), Expect = 0.12
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 421 IRIAPDEQGRFGFNVKGGADLGMPILVVR 449
+ + ++ G ++ GG + G+PIL+
Sbjct: 13 VLLLKEDHEGLGISITGGKEHGVPILISE 41
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 40.7 bits (95), Expect = 6e-04
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGK 313
+V ING +S HE+V+N+IRT + + VR G
Sbjct: 134 IVRINGYSISSCTHEEVINLIRTE----KTVSIKVRHIGL 169
Score = 39.2 bits (91), Expect = 0.002
Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 383 GPAIRTTEPGPAAILPARTTLNFVDDDVEEDLEEGLVLIRIAPDEQGRFGFNVKGGADLG 442
P+ ++P + + + D + L +R+ G +V+GG + G
Sbjct: 52 EPSRLPLFDAIRPLIPLKHQVEY--DQLTPRRSRKLKEVRLDRLHPEGLGLSVRGGLEFG 109
Query: 443 MPILVVR 449
+ +
Sbjct: 110 CGLFISH 116
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 38.5 bits (90), Expect = 6e-04
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 3/43 (6%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRSTQR 319
ING M +I SR L L V + +
Sbjct: 49 INGTVTENMSLTDARKLIEKSRGK---LQLVVLRDLEHHHHHH 88
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 40.9 bits (95), Expect = 6e-04
Identities = 17/123 (13%), Positives = 41/123 (33%), Gaps = 3/123 (2%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRSTQRSIQISSDDNAKSSR 333
+V +NG + G H VV+ IR D LV+ + + + +
Sbjct: 57 IVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLNGPLPVP 116
Query: 334 SLRYDNKVTSLGSREPKRAWDPPHPSDDEG---GFLDKPPPGSAKLEEGEEAGPAIRTTE 390
+ + + + A + P P+ ++ + ++ A + +++
Sbjct: 117 FTNGEIQKENSREALAEAALESPRPALVRSASSDTSEELNSQDSPPKQDSTAPSSTSSSD 176
Query: 391 PGP 393
P
Sbjct: 177 PIL 179
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 38.9 bits (91), Expect = 6e-04
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTV---RPNGKSRSTQ 318
V ++NG + + H V +R S +T+ + G R+T
Sbjct: 62 VAMVNGVSMDNVEHAFAVQQLRKSGKN---AKITIRRKKGGGWRRTTY 106
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 38.5 bits (90), Expect = 6e-04
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPN 311
ING +V+ +Q+ + ++T G + L V PN
Sbjct: 64 INGTNVTNHSVDQLQKAM---KETKGMISLKVIPN 95
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 38.1 bits (89), Expect = 8e-04
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGK 313
+ ING V+ EQ+ ++R R + + + P+ +
Sbjct: 50 IREINGISVANQTVEQLQKMLREMRGS---ITFKIVPSYR 86
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 38.5 bits (90), Expect = 8e-04
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKS 314
+V ++G V+G H V++++ + G++ LTVR S
Sbjct: 59 LVYVDGIPVAGKTHRYVIDLMHHAARN-GQVNLTVRRKVLS 98
Score = 31.5 bits (72), Expect = 0.22
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 421 IRIAPDEQGRFGFNVKGGADLGMPILV 447
+ + E G FGF + GG + G PIL+
Sbjct: 13 VHLRRMESG-FGFRILGGDEPGQPILI 38
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 38.0 bits (89), Expect = 8e-04
Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
++ +NG D+S H++ V ++ + E+VL V+
Sbjct: 55 ILSVNGEDLSSATHDEAVQALKKTGK---EVVLEVK 87
Score = 36.5 bits (85), Expect = 0.003
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 421 IRIAPDEQGRFGFNVKGGADLGMPILVVR 449
+ + + G G ++KGG + MPIL+ +
Sbjct: 8 VTVRKADAGGLGISIKGGRENKMPILISK 36
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 38.0 bits (89), Expect = 9e-04
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRP 310
++ +NG +V +E+VV+ I++S + L V
Sbjct: 51 IIEVNGVNVLDEPYEKVVDRIQSSGKN---VTLLVCG 84
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 38.1 bits (89), Expect = 0.001
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRP 310
+V + G V G+ HE+ V+ I+ + LTV
Sbjct: 54 LVAVAGESVEGLGHEETVSRIQGQGSC---VSLTVVD 87
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 38.1 bits (89), Expect = 0.001
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSR 315
V+ +N V ++ + IR+ LV + P K
Sbjct: 48 VLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRMVPQVKPG 89
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 38.0 bits (89), Expect = 0.001
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRP 310
+V +NG +V H+QVV+ IR + + + L V
Sbjct: 51 LVEVNGENVEKETHQQVVSRIRAALNA---VRLLVVD 84
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 38.1 bits (89), Expect = 0.001
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
V+ +N D + H + V I++T+ E+ + VR
Sbjct: 65 VLAVNDVDFQDIEHSKAVEILKTA----REISMRVR 96
Score = 37.0 bits (86), Expect = 0.003
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 411 EEDLEEGLVLIRIAPDEQGRFGFNVKGGADLGMPILV 447
E + ++ + + GFN++GG + I +
Sbjct: 9 NELTQFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFI 45
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 38.2 bits (89), Expect = 0.001
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTV-RPNGKSRS 316
++ +N + M ++ V ++R G +VLTV + G S +
Sbjct: 58 LLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGGGSGN 101
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 37.7 bits (88), Expect = 0.001
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTV 308
++ +NG +V G+ H +VV I+ D E L V
Sbjct: 52 LIEVNGQNVEGLRHAEVVASIKARED---EARLLV 83
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 38.6 bits (90), Expect = 0.001
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 407 DDDVEED---LEEGLVLIRIAPDEQGRFGFNVKGGADLGMPILVVR 449
D D+EED + + + D Q G ++ GGA + +V+
Sbjct: 6 DYDIEEDKLGIPTVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQ 51
Score = 36.7 bits (85), Expect = 0.005
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
+NG + G +V +I+ + GE+ +
Sbjct: 73 VNGRSIKGKTKVEVAKMIQEVK---GEVTIHYN 102
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 37.8 bits (88), Expect = 0.001
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRP 310
ING + G+ +R ++ + L++
Sbjct: 65 INGTSLVGLPLAACQAAVRETKSQ-TSVTLSIVH 97
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 37.8 bits (88), Expect = 0.001
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTV-RPNGKSRSTQRSIQISS 325
++ +NG +V HE+VV ++ S ++ + R ++ SS
Sbjct: 56 LIEVNGENVEDASHEEVVEKVKKSGSR---VMFLLVDKETDKRHVEQKSGPSS 105
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 37.7 bits (88), Expect = 0.001
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRP 310
+V +NG + G H VV+ IR D E L V
Sbjct: 57 IVEVNGVCMEGKQHGDVVSAIRAGGD---ETKLLVVD 90
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 38.3 bits (89), Expect = 0.002
Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTV-RPNGKSRSTQRS 320
+ G + G+ + NII+ D G + + + R + +S+ T +
Sbjct: 85 LGGTAMQGLTRFEAWNIIKALPD--GPVTIVIRRKSLQSKETTAA 127
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 37.8 bits (88), Expect = 0.002
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
V+ NG ++ +E+V +II GE + VR
Sbjct: 74 VLEWNGIPLTSKTYEEVQSIISQQS---GEAEICVR 106
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 38.2 bits (89), Expect = 0.002
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRSTQRSIQISSDDNAKSSR 333
+V ++G ++ G + VV ++R + + LT+ K+ S+ ++ SD S
Sbjct: 71 IVAVDGVNIQGFANHDVVEVLRNAGQV---VHLTLVR-RKTSSSTSPLEPPSDRGTVSGP 126
Query: 334 S 334
S
Sbjct: 127 S 127
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 39.0 bits (91), Expect = 0.002
Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 18/103 (17%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRSTQRSIQISSDDNAKSSRSLR 336
+N DV + H V ++ + + L V R + ++ K + L
Sbjct: 63 VNEVDVREVTHSAAVEALKEAGSI---VRLYVM-----RRKPPAEKVMEIKLIKGPKGLG 114
Query: 337 YDNKVTSLGSREPKRAWDPPHPSDDEGGFLDKPPPGSAKLEEG 379
+ S+ H D ++ K G A ++G
Sbjct: 115 F-----SIAGGV-----GNQHIPGDNSIYVTKIIEGGAAHKDG 147
Score = 37.0 bits (86), Expect = 0.010
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
++ +N + + HE V ++ + D + L V
Sbjct: 155 ILAVNSVGLEDVMHEDAVAALKNTYDV---VYLKVA 187
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 39.0 bits (91), Expect = 0.002
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRSTQRSIQISSDDNAKSSR 333
V+ ING E+ ++R S T ++ L + + S K S
Sbjct: 61 VMAINGIPTEDSTFEEANQLLRDSSIT-SKVTLEIEFDVAESVIPSSGTFHVKLPKKHSV 119
Query: 334 SL 335
L
Sbjct: 120 EL 121
Score = 37.4 bits (87), Expect = 0.007
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPN 311
I+ + E V I++ D + L +R +
Sbjct: 163 IDNIRLDSCSMEDAVQILQQCEDL---VKLKIRKD 194
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 36.8 bits (86), Expect = 0.002
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
+NG V G HE+ V +++ ++ G + L VR
Sbjct: 58 VNGVSVEGEQHEKAVELLKAAQ---GSVKLVVR 87
Score = 29.9 bits (68), Expect = 0.65
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 431 FGFNVKGGADLGMPILV 447
GFN+ GG + PI +
Sbjct: 18 LGFNIMGGKEQNSPIYI 34
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 37.5 bits (87), Expect = 0.002
Identities = 6/35 (17%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTV 308
+V I D + +V+ ++++ + E+ + V
Sbjct: 68 IVSIQLVDCKWLTLSEVMKLLKSFGE--DEIEMKV 100
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 36.9 bits (86), Expect = 0.002
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
++G V G H+ VV +++ + G + LTVR
Sbjct: 55 VDGTPVIGKSHQLVVQLMQQAAKQ-GHVNLTVR 86
Score = 29.9 bits (68), Expect = 0.58
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 414 LEEGLVLIRIAPDEQGRFGFNVKGGADLGMPILV 447
+E+ + L R ++ FGF + GG + G PI +
Sbjct: 2 MEQDIFLWR----KETGFGFRILGGNEPGEPIYI 31
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 36.5 bits (85), Expect = 0.002
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
V+ ING M +I S+ L + V+
Sbjct: 46 VLKINGTVTENMSLTDAKTLIERSKGK---LKMVVQ 78
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 37.4 bits (87), Expect = 0.002
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
++G D+ H + V I+ + + +V V+
Sbjct: 78 VSGVDLQNASHSEAVEAIKNAGN---PVVFIVQ 107
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 36.9 bits (86), Expect = 0.003
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
V+ ING G+ H Q V IR L L +R
Sbjct: 63 VLHINGESTQGLTHAQAVERIRAGGPQ---LHLVIR 95
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 36.9 bits (86), Expect = 0.003
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
+V ING + G E + +I+ S L L VR
Sbjct: 60 LVNINGTPLYGSRQE-ALILIKGS---FRILKLIVR 91
Score = 33.8 bits (78), Expect = 0.028
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 420 LIRIAPDEQGRFGFNVKGGADLGMPILVVR 449
+ + +GF +KGG + P+ V +
Sbjct: 12 YVPVQLQGGAPWGFTLKGGLEHCEPLTVSK 41
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 36.5 bits (85), Expect = 0.003
Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRST 317
++ +NG V+ H +VV +I++ + LT+ + S+
Sbjct: 53 IIKVNGTMVTNSSHLEVVKLIKSG----AYVALTLLGSSSGPSS 92
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 36.5 bits (85), Expect = 0.003
Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTV-RPNGKSRSTQ 318
+NG D+ H++ +N++R + + LT+ R +ST+
Sbjct: 58 VNGIDLRKATHDEAINVLRQTP---QRVRLTLYRDEAPYKSTR 97
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 36.6 bits (85), Expect = 0.003
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
V+ ING M +I S+ L + V+
Sbjct: 48 VLKINGTVTENMSLTDAKTLIERSKGK---LKMVVQ 80
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 36.6 bits (85), Expect = 0.003
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTV-RPNGKS 314
+V IN +V + H +VV+I++ E L + R +G S
Sbjct: 54 IVEINQQNVQNLSHTEVVDILK-DCPIGSETSLIIHRGSGPS 94
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 37.5 bits (87), Expect = 0.003
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKS 314
V+ NG + G E+V NII S+ ++ L V +G S
Sbjct: 90 VLEWNGRLLQGATFEEVYNIILESKPE-PQVELVVSRSGPS 129
Score = 27.8 bits (62), Expect = 6.3
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 3/39 (7%)
Query: 414 LEEGLVLIRIAPDEQGRFGFNVKGGADLG---MPILVVR 449
L + L + D G V GG + + +
Sbjct: 33 LNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITK 71
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 36.6 bits (85), Expect = 0.003
Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGK 313
++ +N ++ + H + V ++ S +LVL+V G+
Sbjct: 59 ILRVNDKSLARVTHAEAVKALKGS----KKLVLSVYSAGR 94
Score = 34.6 bits (80), Expect = 0.015
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 418 LVLIRIAPDEQGRFGFNVKGGADLGMPILVVR 449
LV +R A +G GF+++GG++ G+ I V
Sbjct: 11 LVSLRRAKAHEG-LGFSIRGGSEHGVGIYVSL 41
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 37.1 bits (86), Expect = 0.004
Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRSTQRSIQISSDDNAKSSR 333
+N + + ++ + ++R +VL +R + +T + D K+ R
Sbjct: 61 VNDRPLVDLSYDSALEVLRGIASE-THVVLILRG-PEGFTTHLETTFTGDGTPKTIR 115
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 37.3 bits (86), Expect = 0.004
Identities = 9/53 (16%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRSTQRSIQISSD 326
++ +NG D++ + H+Q + + + + L V ++ Q+S+ ++
Sbjct: 88 IMQVNGWDMTMVTHDQARKRLT--KRSEEVVRLLVTRQSLQKAVQQSMLSETE 138
Score = 28.8 bits (64), Expect = 2.7
Identities = 6/34 (17%), Positives = 17/34 (50%)
Query: 407 DDDVEEDLEEGLVLIRIAPDEQGRFGFNVKGGAD 440
++ + + + + + ++ E GF++ GG D
Sbjct: 16 ENLYFQSMVQRVEIHKLRQGENLILGFSIGGGID 49
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 38.2 bits (89), Expect = 0.004
Identities = 6/33 (18%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
++G + G H + ++I++ E L +
Sbjct: 163 VDGIRLLGTTHAEAMSILKQCGQ---EATLLIE 192
Score = 35.5 bits (82), Expect = 0.028
Identities = 6/36 (16%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
+ +NG +++ H++++++++ + +VL V
Sbjct: 58 IKAVNGINLAKFRHDEIISLLKNVGE---RVVLEVE 90
Score = 34.7 bits (80), Expect = 0.055
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 415 EEGLVLIRIAPDEQGRFGFNVKGGADLGMPILVVR 449
+G ++ + E G V GG D V
Sbjct: 5 FKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSN 39
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 36.7 bits (85), Expect = 0.004
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRSTQRSIQISS 325
ING + G H + I+R +R+ +++T + ++ S SS
Sbjct: 70 INGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPEAMPDLNSSGPSS 118
Score = 28.2 bits (63), Expect = 4.1
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 416 EGLVLIRIAPDEQGRFGFNVKGGADL-GMPILVVR 449
+G+ + + +E GF++ GGADL I V R
Sbjct: 14 DGIHVTILHKEEGAGLGFSLAGGADLENKVITVHR 48
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 37.5 bits (87), Expect = 0.004
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 649 DSQTGEKRDVTQMQYLAWPDHGVPDDVNRFLAFTRQVRHERAGMVEPAIVHCSA 702
+K + + ++ PD GVP D ++FL + + E+ E +VHC
Sbjct: 51 YLSILKKNGLQPL-HIPIPDGGVPSD-SQFLTIMKWLLSEK----EGNLVHCVG 98
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 36.7 bits (85), Expect = 0.004
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
+NG + G +V +I+ + GE+ +
Sbjct: 78 VNGRSIKGKTKVEVAKMIQEVK---GEVTIHYN 107
Score = 32.0 bits (73), Expect = 0.17
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 421 IRIAPDEQGRFGFNVKGGADLGMPILVVR 449
+ + D Q G ++ GGA + +V+
Sbjct: 28 VTLQKDAQNLIGISIGGGAQYCPCLYIVQ 56
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 36.7 bits (85), Expect = 0.004
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELV-LTVR 309
ING V+ + ++ + + G+ + L V
Sbjct: 71 INGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVA 104
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 36.4 bits (84), Expect = 0.005
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRSTQRS 320
+ I +V + H QVV +++ ++ L + G T+ +
Sbjct: 56 IKEIYHQNVQNLTHLQVVEVLK-QFPVGADVPLLILRGGPPSPTKTA 101
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 37.9 bits (88), Expect = 0.005
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTV-RPNGKSRSTQRS 320
+ NG + G+ + + + + G++ + V RP R+
Sbjct: 161 ITKFNGDALEGLPFQVCYALFKGAN---GKVSMEVTRPKPTLRTEAPK 205
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 35.8 bits (83), Expect = 0.005
Identities = 5/43 (11%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRS 316
++ IN + G + +++++ + +T + L ++ ++
Sbjct: 55 ILAINSSSLKGKPLSEAIHLLQMAGET---VTLKIKKQTDAQP 94
Score = 30.4 bits (69), Expect = 0.46
Identities = 4/35 (11%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 415 EEGLVLIRIAPDEQGRFGFNVKGGADLGMPILVVR 449
+ + + G + G + PI++
Sbjct: 3 GAIIYTVELKRYGGP-LGITISGTEEPFDPIIISS 36
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 36.0 bits (84), Expect = 0.006
Identities = 5/33 (15%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
++G + G H + ++I++ L +
Sbjct: 60 VDGIRLLGTTHAEAMSILKQCGQE---AALLIE 89
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 35.8 bits (83), Expect = 0.006
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
++ +N VV +I S + L L +
Sbjct: 56 LLQVNHVRTRDFDCCLVVPLIAESGNK---LDLVIS 88
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 36.6 bits (85), Expect = 0.006
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRST 317
I G GM H Q VN+++ + G + + V G T
Sbjct: 81 ICGTSTEGMTHTQAVNLLKNAS---GSIEMQVVAGGDVSET 118
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 36.2 bits (84), Expect = 0.006
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
++ +NG + G H + V +R + + + V
Sbjct: 70 LLEVNGVALQGAEHHEAVEALRGAGTA---VQMRVW 102
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 38.4 bits (88), Expect = 0.007
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSR 315
++ ING V HE++V + S + + P R
Sbjct: 339 IIEINGQSVVATAHEKIVQALSNSVGE---IHMKTMPAAMFR 377
Score = 33.8 bits (76), Expect = 0.17
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPN 311
ING + G+ II+ ++ + V
Sbjct: 260 INGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCP 294
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 35.8 bits (83), Expect = 0.008
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRSTQRSIQISS 325
+NG ++ HEQ ++ + + + + + + S S SS
Sbjct: 67 VNGVNLRNATHEQAAAALKRAGQS---VTIVAQYRPEEYSRFESSGPSS 112
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 35.8 bits (83), Expect = 0.009
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRSTQRSIQISS 325
+NG + G+ + + V++IR + V + + + SS
Sbjct: 64 VNGSSLLGLGYLRAVDLIRHGGKK---MRFLVAKSDVETAKKIHSGPSS 109
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 35.9 bits (83), Expect = 0.009
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
VV++NG + + H V +R S + V+
Sbjct: 69 VVMVNGTPMEDVLHSFAVQQLRKSGKI---AAIVVK 101
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 35.3 bits (82), Expect = 0.009
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
++ +NG + G H + V +R + + + V
Sbjct: 58 LLEVNGVALQGAEHHEAVEALRGAGTA---VQMRVW 90
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 35.4 bits (82), Expect = 0.010
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
++G D+ HEQ V IR + + +V V+
Sbjct: 67 VDGMDLRDASHEQAVEAIRKAGNP---VVFMVQ 96
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 35.5 bits (82), Expect = 0.012
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRSTQRSIQISS 325
+NG D+ HEQ ++ + T ++ +P SR S SS
Sbjct: 66 VNGVDLRNASHEQAAIALKNAGQTV-TIIAQYKPEEYSRFEANSRVDSS 113
Score = 27.8 bits (62), Expect = 6.0
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 411 EEDLEEGLVLIRIAPDEQGRFGFNVKGGADLGMPILV 447
EED+ I I G GFN+ GG D G I +
Sbjct: 8 EEDIPREPRRIVIHRGSTG-LGFNIVGGED-GEGIFI 42
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 35.0 bits (81), Expect = 0.013
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
V+ ING DV+ H+ V+++ + T + L +
Sbjct: 63 VLSINGVDVTEARHDHAVSLLTAASPT---IALLLE 95
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 35.0 bits (81), Expect = 0.013
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
++ ING M H + + +I+ + L ++
Sbjct: 74 ILEINGETTKNMKHSRAIELIKNGGRR---VRLFLK 106
Score = 30.8 bits (70), Expect = 0.44
Identities = 9/52 (17%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 398 PARTTLNFVDDDVEEDLEEGLVLIRIAPDEQGRFGFNVKGGADLGMPILVVR 449
+ ++ +++ + + + +G FGF+++GG + M + V+R
Sbjct: 6 HHSSGVDLGTENLYFQSMDFYT-VELERGAKG-FGFSLRGGREYNMDLYVLR 55
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 35.1 bits (81), Expect = 0.014
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTV-RPNGKSRSTQRS 320
+NG D+ HE+ + +R + + L V R R +
Sbjct: 71 VNGVDLRNSSHEEAITALRQTPQK---VRLVVYRDEAHYRDEESG 112
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 35.0 bits (81), Expect = 0.014
Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTV-RP----NGKSRSTQRSIQIS 324
NG + G+ + + + + G++ + V RP G R ++ +
Sbjct: 53 FNGDALEGLPFQVCYALFKGAN---GKVSMEVTRPKPGSGGSGSLVPRLLRRN 102
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 34.9 bits (81), Expect = 0.014
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
+NG + G H+Q V +R + + L +
Sbjct: 61 VNGVSLEGATHKQAVETLRNTGQV---VHLLLE 90
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 35.6 bits (82), Expect = 0.014
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTV-RPNGKSRSTQRSIQISSD 326
+V +NG + G H VV+ IR D E L V + + S +
Sbjct: 57 IVEVNGVCMEGKQHGDVVSAIRAGGD---ETKLLVVDRETDEFFKKCRVIPSQE 107
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 35.1 bits (81), Expect = 0.014
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRST 317
+NG D+S H+Q V +T+++ +V+ V S+
Sbjct: 69 VNGRDLSRATHDQAVEAFKTAKEP---IVVQVLRRTSGPSS 106
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 35.0 bits (81), Expect = 0.014
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
+NG D++G E+VV+++R+++ G + L V
Sbjct: 67 VNGVDLAGKSQEEVVSLLRSTKME-GTVSLLVF 98
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 35.0 bits (81), Expect = 0.014
Identities = 7/36 (19%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
++ ING M H + + +I++ + L ++
Sbjct: 61 IIEINGESTRDMTHARAIELIKSGGRR---VRLLLK 93
Score = 29.6 bits (67), Expect = 0.89
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 431 FGFNVKGGADLGMPILVVR 449
FGF+++GG + M + V+R
Sbjct: 24 FGFSIRGGREYKMDLYVLR 42
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 34.5 bits (80), Expect = 0.015
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTV-RP 310
++++NG DV E V +++ S G + L V R
Sbjct: 54 ILMVNGEDVRNATQEAVAALLKCSL---GTVTLEVGRI 88
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 36.0 bits (83), Expect = 0.015
Identities = 6/33 (18%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
ING + +G ++ +++ + + +T+R
Sbjct: 54 INGENCAGWSSDKAHKVLKQAFGEK--ITMTIR 84
Score = 31.7 bits (72), Expect = 0.44
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRP 310
ING +V G+ Q+ +I+ TS + +T+ P
Sbjct: 134 INGQNVIGLKDSQIADILSTS---GTVVTITIMP 164
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 35.1 bits (81), Expect = 0.016
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
++G D+ HEQ V IR + + +V V+
Sbjct: 87 VDGMDLRDASHEQAVEAIRKAGN---PVVFMVQ 116
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 34.7 bits (80), Expect = 0.016
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRD--THGELVLTVRP 310
+NG + G H + II + + V
Sbjct: 60 VNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTE 95
Score = 28.5 bits (64), Expect = 2.4
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 426 DEQGRFGFNVKGGADLGMPILVVRGRRRGG 455
G ++GGA+ P+ + +RGG
Sbjct: 14 KSAATLGIAIEGGANTRQPLPRIVTIQRGG 43
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 34.6 bits (80), Expect = 0.018
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
ING D+ E II+ S + LT+
Sbjct: 57 INGHDLKYGTPELAAQIIQASG---ERVNLTIA 86
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 34.6 bits (80), Expect = 0.019
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
+NG D+ HEQ ++ + T + + +
Sbjct: 63 VNGVDLRNASHEQAAIALKNAGQT---VTIIAQ 92
Score = 28.4 bits (64), Expect = 2.3
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 411 EEDLEEGLVLIRIAPDEQGRFGFNVKGGADLGMPILV 447
EED+ I I G GFN+ GG + G I +
Sbjct: 5 EEDIPREPRRIVIHRGSTG-LGFNIVGG-EXGEGIFI 39
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 34.6 bits (80), Expect = 0.019
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
+NG + G+ HE+ V I++ ++ G + L V
Sbjct: 81 VNGQSLEGVTHEEAVAILKRTK---GTVTLMVL 110
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 34.3 bits (79), Expect = 0.020
Identities = 8/36 (22%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
++ NG + H Q V++++T ++T + L +
Sbjct: 66 IIQANGYSFINIEHGQAVSLLKTFQNT---VELIIV 98
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 34.7 bits (80), Expect = 0.021
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
+NG D+ G E+VV+++R+++ G + L V
Sbjct: 86 VNGVDLVGKSQEEVVSLLRSTKME-GTVSLLVF 117
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 33.8 bits (78), Expect = 0.027
Identities = 8/36 (22%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
++ +NG D+ + H+ V++ R + + L V+
Sbjct: 62 ILSVNGQDLKNLLHQDAVDLFRNAGYA---VSLRVQ 94
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 33.9 bits (78), Expect = 0.027
Identities = 8/36 (22%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
++ NG + H Q V++++T ++T + L +
Sbjct: 58 IIQANGYSFINIEHGQAVSLLKTFQNT---VELIIV 90
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 34.2 bits (79), Expect = 0.030
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
+NG + G H+Q V +R + + L +
Sbjct: 70 VNGVSLEGATHKQAVETLRNTGQV---VHLLLE 99
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 33.8 bits (78), Expect = 0.033
Identities = 8/33 (24%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
++G ++ G ++Q V ++R + T ++LT+
Sbjct: 61 VDGTNLQGFTNQQAVEVLRHTGQT---VLLTLM 90
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 33.9 bits (78), Expect = 0.033
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
I G +V GM EQV ++R + + V
Sbjct: 66 IGGTNVQGMTSEQVAQVLRN---CGNSVRMLVA 95
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 33.4 bits (77), Expect = 0.036
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTV-RP 310
NG + G+ + + + + G++ + V RP
Sbjct: 59 FNGDALEGLPFQVSYALFKGAN---GKVSMEVTRP 90
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 33.4 bits (77), Expect = 0.042
Identities = 8/39 (20%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTV-RPN 311
++ +N ++ + HE+ V ++ + D + L V +P
Sbjct: 58 LLAVNNTNLQDVRHEEAVASLKNTSDM---VYLKVAKPG 93
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 33.9 bits (78), Expect = 0.042
Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTV---RPNGKSRSTQRSIQISSDD 327
++G + G+ +++R ++ + + RP +S Q Q +
Sbjct: 63 VDGTSLVGVTQSFAASVLRNTKGR---VRFMIGRERPGEQSEVAQLIQQTLEQE 113
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 33.5 bits (77), Expect = 0.045
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
+V +N + + V I++ G + L +
Sbjct: 69 LVSVNEYCLDNTSLAEAVEILKAVPP--GLVHLGIC 102
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 33.6 bits (77), Expect = 0.049
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPN 311
NG ++ +Q II DT + + + N
Sbjct: 69 FNGINLRSATEQQARLIIGQQCDT---ITILAQYN 100
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 33.6 bits (77), Expect = 0.051
Identities = 8/36 (22%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
++ +NG D+ + H+ V++ R + + L V+
Sbjct: 72 ILSVNGQDLKNLLHQDAVDLFRNAGYA---VSLRVQ 104
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 33.1 bits (76), Expect = 0.053
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
V+ +N DVS + H + V ++ + + L VR
Sbjct: 59 VLRVNEVDVSEVVHSRAVEALKEAGPV---VRLVVR 91
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 33.1 bits (76), Expect = 0.058
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTV-RPNGKSRSTQRSI 321
++ +N + + HE+ V ++ + D + L V +P S
Sbjct: 58 LLAVNSVSLEEVTHEEAVTALKNTSDF---VYLKVAKPTSMYISRHHHH 103
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 32.8 bits (75), Expect = 0.061
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRP 310
ING ++ G H V ++ + + + P
Sbjct: 56 INGENIVGWRHYDVAKKLKELKKEELFTMKLIEP 89
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 32.6 bits (75), Expect = 0.062
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
+V +N V G H QVV I ++ + L +
Sbjct: 50 IVSVNDTCVLGHTHAQVVKIFQSIP-IGASVDLELC 84
Score = 27.2 bits (61), Expect = 4.3
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 431 FGFNVKGGADLGMPILV 447
FGF V GG + + +
Sbjct: 13 FGFTVVGGDEPDEFLQI 29
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 33.6 bits (77), Expect = 0.065
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
IN + G H+ II+T+ + L
Sbjct: 79 INNQILYGRSHQNASAIIKTAPSK---VKLVFI 108
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 33.1 bits (76), Expect = 0.067
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
+N + G+ H + V ++R+ DT L + V
Sbjct: 72 VNQQSLLGLTHGEAVQLLRSVGDT---LTVLVC 101
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 33.6 bits (77), Expect = 0.067
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
+V +N V G H QVV I ++ + L +
Sbjct: 68 IVSVNDTCVLGHTHAQVVKIFQSIP-IGASVDLELC 102
Score = 28.6 bits (64), Expect = 2.8
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 413 DLEEGLVLIRIAPDEQGRFGFNVKGGADLGMPILV 447
+L+ + ++ +G FGF V GG + + +
Sbjct: 14 ELKGKFIHTKLRKSSRG-FGFTVVGGDEPDEFLQI 47
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 33.1 bits (76), Expect = 0.070
Identities = 3/33 (9%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
++G + G+ ++R ++ + +
Sbjct: 68 VDGISLVGVTQNFAATVLRNTKGN---VRFVIG 97
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 32.8 bits (75), Expect = 0.084
Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGK 313
+NG D S + H++ VN++++S L +++
Sbjct: 68 VNGVDFSNLDHKEAVNVLKSS----RSLTISIVAAAG 100
Score = 29.8 bits (67), Expect = 1.1
Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 413 DLEEGLVLIRIAPDEQGRFGFNVKGGADLGMPILV 447
+ +E V I + G ++ G I +
Sbjct: 13 ENKEKKVFISLVGSRG--LGCSISSGPIQKPGIFI 45
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 33.2 bits (76), Expect = 0.085
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
+V IN V G H VV + ++ + L +
Sbjct: 69 IVYINEVCVLGHTHADVVKLFQSVP-IGQSVNLVLC 103
Score = 28.2 bits (63), Expect = 4.4
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 413 DLEEGLVLIRIAPDEQGRFGFNVKGGADLGMPILV 447
L+ + + G FGF + GG + + V
Sbjct: 15 QLKGTFLSTTLKKSNMG-FGFTIIGGDEPDEFLQV 48
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 32.7 bits (75), Expect = 0.086
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
++ +V GM VV ++R + + + L +
Sbjct: 72 VDDVNVQGMAQSDVVEVLRNAGNP---VRLLLI 101
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 35.3 bits (80), Expect = 0.087
Identities = 21/182 (11%), Positives = 45/182 (24%), Gaps = 5/182 (2%)
Query: 196 VQLKREPSENYDTLLGFNMTTYRSCKNLWKSCVEHHTFFRLHSPRRSRKFLPPPLSLGSK 255
V+ +E + + F + ++ +K
Sbjct: 131 VEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTK 190
Query: 256 FFSSGRTEYQTYQQARRSVVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSR 315
G Q ++ +N + + HE V ++ + D + ++ S
Sbjct: 191 IIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDV-----VYLKVAKPSN 245
Query: 316 STQRSIQISSDDNAKSSRSLRYDNKVTSLGSREPKRAWDPPHPSDDEGGFLDKPPPGSAK 375
+ D S+ L + +S + A P P D
Sbjct: 246 AYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIP 305
Query: 376 LE 377
E
Sbjct: 306 RE 307
Score = 32.2 bits (72), Expect = 0.63
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 4/88 (4%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRSTQRS-IQISSDDNAKSSRSL 335
+NG D+ HEQ + ++ + + + + S + I + SS
Sbjct: 359 VNGVDLRNASHEQAAIAL---KNAGQTVTIIAQYKPEEYSRFEAKIHDLREQLMNSSLGS 415
Query: 336 RYDNKVTSLGSREPKRAWDPPHPSDDEG 363
+ ++ RA + D G
Sbjct: 416 GTASLRSNPKRGFYIRALFDYDKTKDCG 443
Score = 31.4 bits (70), Expect = 1.3
Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 18/98 (18%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRSTQRSIQISSDDNAKSSRSLR 336
+N DV + H V ++ + + L V R + ++ K + L
Sbjct: 117 VNEVDVREVTHSAAVEALKEA---GSIVRLYVM-----RRKPPAEKVMEIKLIKGPKGLG 168
Query: 337 YDNKVTSLGSREPKRAWDPPHPSDDEGGFLDKPPPGSA 374
+ H D ++ K G A
Sbjct: 169 FSIAGGV----------GNQHIPGDNSIYVTKIIEGGA 196
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 34.1 bits (77), Expect = 0.092
Identities = 19/119 (15%), Positives = 46/119 (38%), Gaps = 2/119 (1%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRSTQRSIQISSDDNAKSSR 333
++ NG + H Q V++++T ++T ++ VR G + +++ D +
Sbjct: 47 IIQANGYSFINIEHGQAVSLLKTFQNTV--ELIIVREVGNGAKQEIRVRVEKDGGSGGVS 104
Query: 334 SLRYDNKVTSLGSREPKRAWDPPHPSDDEGGFLDKPPPGSAKLEEGEEAGPAIRTTEPG 392
S+ + +V + +WD + G++ ++E + T G
Sbjct: 105 SVPTNLEVVAATPTSLLISWDASYYGVSYYRITYGETGGNSPVQEFTVPYSSSTATISG 163
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 32.8 bits (75), Expect = 0.095
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRD-THGELVLTVRPNGKS 314
+V IN + G+ E+ +II ++ + + +G S
Sbjct: 66 LVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRSGPS 107
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 32.0 bits (73), Expect = 0.11
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKS 314
+ +NG V G + ++R + G ++L + S
Sbjct: 54 IKEVNGQPV-GSDPRALQELLRNAS---GSVILKILSGPSS 90
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 32.8 bits (75), Expect = 0.11
Identities = 4/33 (12%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
++G +++ + + V +++ + +VL
Sbjct: 81 VDGVELTEVSRSEAVALLKRTS---SSIVLKAL 110
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 32.9 bits (75), Expect = 0.12
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
+NG + G + + + +R S G + ++
Sbjct: 83 VNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQ 115
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 32.3 bits (74), Expect = 0.13
Identities = 6/40 (15%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTV-RPNGKSR 315
++G + G+ E+ ++ + + L V + R
Sbjct: 66 VDGRSLVGLSQERAAELMTRTS---SVVTLEVAKQGAIRR 102
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 33.2 bits (75), Expect = 0.25
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 388 TTEPGPA---AILPARTTLNFVDDDVEEDLEEGLVLIRIAPDEQGRFGFNVKGGADLGMP 444
EPGP A L + E L + + + G G ++KGG + MP
Sbjct: 45 DGEPGPEPEPAQLNGAAEPGAAPPQLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMP 104
Query: 445 ILVVR 449
IL+ +
Sbjct: 105 ILISK 109
Score = 30.5 bits (68), Expect = 1.5
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRSTQRSIQISSDDNAKSSR 333
++ +NG D+S H++ V ++ + ++ S + S +S
Sbjct: 128 ILSVNGEDLSSATHDEAVQALKKTGKEV--VLEVKYMKEVSPYFKNSAGGTSVGWDSPPA 185
Query: 334 S 334
S
Sbjct: 186 S 186
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.35
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 29 QIRKDILAHRLIL-APSTACLLA-SYTVQ 55
++K L L L A +A LA T++
Sbjct: 21 ALKK--LQASLKLYADDSAPALAIKATME 47
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 31.8 bits (72), Expect = 0.38
Identities = 3/33 (9%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
++G + G+ +++R ++ + +
Sbjct: 139 VDGTSLVGVTQSFAASVLRNTKGR---VRFMIG 168
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 31.2 bits (71), Expect = 0.38
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
+N + + HE+ V I++ + + + L V
Sbjct: 82 VNNYSLEEVTHEEAVAILKNTSEV---VYLKVG 111
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 31.0 bits (70), Expect = 0.47
Identities = 3/36 (8%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
++ + +V G + + +++ L +
Sbjct: 74 LISVGHANVLGYTLREFLKLLQNIT-IGTVLQIKAY 108
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 30.3 bits (68), Expect = 0.50
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 5/36 (13%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
++ IN ++ + + + L L VR
Sbjct: 59 ILEINNRAADALNSSMLKDFLSQPS-----LGLLVR 89
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 32.0 bits (72), Expect = 0.56
Identities = 10/88 (11%), Positives = 26/88 (29%), Gaps = 13/88 (14%)
Query: 505 YRKKPGLSMLHANKQENVIKNRYRDISPYDATRVVLHEAPDGDY--INA---NTVAMEIP 559
Y + + + ++ + V R +S + + + + I +A+E+P
Sbjct: 124 YSSEVKENSVDSDDKAKVPP-LIRIVSGLELSDT---KQKGKKFLVIAYEPFENIAIELP 179
Query: 560 GSGIVNRYIATQGPLASTV----GDFWH 583
+ I+ V
Sbjct: 180 PNEILFSENNDMDNNNDGVDELNKKCTF 207
>3m1c_B GL, envelope glycoprotein L; glycoprotein H, GH/GL, envelope
protein, HER simplex virus, disulfide bond, HOST cell
MEMB HOST endosome; HET: NAG XYL; 3.00A {Human
herpesvirus 2}
Length = 204
Score = 31.5 bits (70), Expect = 0.62
Identities = 18/70 (25%), Positives = 21/70 (30%), Gaps = 5/70 (7%)
Query: 328 NAKSSRSLRYDNKVTSLGSREPKRAWDPPHPSDDEGGFLDKP----PPGSAKLEEGEEAG 383
N SR+ R + L W+PP SDDE KP PP A
Sbjct: 131 NFDYSRTRRCVGRRD-LRPANTTSTWEPPVSSDDEASSQSKPLATQPPVLALSNAPPRRV 189
Query: 384 PAIRTTEPGP 393
R
Sbjct: 190 SPTRGRRRHT 199
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 30.6 bits (69), Expect = 0.68
Identities = 5/35 (14%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 277 INGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPN 311
+N D + + E+ V + E+ + +
Sbjct: 78 VNNVDFTNIIREEAVLFLLDLPKGE-EVTILAQKK 111
>3f41_A Phytase; tandem repeat, protein tyrosine phosphatase, inositol
phosphatase, hydrolase; 2.30A {Mitsuokella multacida}
Length = 629
Score = 32.1 bits (72), Expect = 0.74
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 12/93 (12%)
Query: 616 ETLELSGGRFNISCAKEEADPSGSFVFREFVLRDSQTGEKRDVTQMQY----LAWPDHGV 671
E L+ R E + + T E++ V + +A DH
Sbjct: 453 ENSRLNAARGKSLIVAELDKDKMPIDPKPVKIESVMT-EQQLVEKNGLHYYRIAATDHIW 511
Query: 672 P--DDVNRFLAFTRQVRHERAGMVEPAIVHCSA 702
P +++ F+ FTR + HC A
Sbjct: 512 PSAANIDEFINFTRTMPANAW-----LHFHCQA 539
Score = 30.9 bits (69), Expect = 1.7
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 11/55 (20%)
Query: 654 EKRDVTQMQY----LAWPDHGVP--DDVNRFLAFTRQVRHERAGMVEPAIVHCSA 702
E+ V Q L DH P DV++FL F + + + HC A
Sbjct: 192 EEEMVKQHGANYFRLTLQDHFRPDDPDVDKFLEFYKSLPKD-----AWLHYHCYA 241
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 30.4 bits (68), Expect = 0.76
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 5/36 (13%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVR 309
++ IN ++ + + + L L VR
Sbjct: 68 ILEINNRAADALNSSMLKDFLS-----QPSLGLLVR 98
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 29.7 bits (67), Expect = 1.3
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 277 INGCDVS-GMHHEQVVNIIRTSRDTHGELVLTVR 309
IN + + H+Q + +++ + G L L V
Sbjct: 82 INHTPLDQNISHQQAIALLQQTT---GSLRLIVA 112
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 30.7 bits (68), Expect = 1.8
Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRSTQRSIQISSDDNAKSSR 333
++ +N D + + E+ V + +T+ K +R ++ D+
Sbjct: 47 ILRVNNVDFTNIIREEAVLFLLDLPK---GEEVTILAQKKKDVYRRIVESDVGDSFYIRT 103
Query: 334 SLRYDNK 340
Y+ +
Sbjct: 104 HFEYEKE 110
>3mmj_A MYO-inositol hexaphosphate phosphohydrolase; phytase, protein
tyrosine phosphatase, inositol phosphate, I phosphatase;
HET: IHP; 1.60A {Selenomonas ruminantium} PDB: 1u24_A
1u25_A* 1u26_A* 3o3l_A* 3moz_A* 2pt0_A 2psz_A 3d1h_A
3d1o_A 3d1q_A 2b4u_A 2b4p_A 2b4o_A
Length = 314
Score = 30.1 bits (67), Expect = 2.5
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 664 LAWPDHGVPDD--VNRFLAFTRQVRHERAGMVEPAIVHCSA 702
+A DH P ++RFLAF R + + H A
Sbjct: 187 IAATDHVWPTPENIDRFLAFYRTLPQD-----AWLHFHSEA 222
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 30.2 bits (69), Expect = 2.6
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 429 GRFGFNVKGG 438
GRF FNVKGG
Sbjct: 443 GRFSFNVKGG 452
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 30.2 bits (69), Expect = 2.6
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 429 GRFGFNVKGG 438
GRF FNVKGG
Sbjct: 763 GRFSFNVKGG 772
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 30.2 bits (69), Expect = 2.7
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 429 GRFGFNVKGG 438
GRF FNVKGG
Sbjct: 745 GRFSFNVKGG 754
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 30.1 bits (69), Expect = 2.9
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 429 GRFGFNVKGG 438
RF FN+KGG
Sbjct: 705 SRFSFNLKGG 714
>3ko5_A D-tyrosyl-tRNA(Tyr) deacylase; DTD, ADP, hydrolase; HET: ADP; 2.09A
{Plasmodium falciparum} PDB: 3knp_A 3knf_A* 3ko3_A*
3ko4_A* 3ko7_A* 3ko9_A* 3kob_A* 3koc_A* 3kod_A 3lmt_A
3lmu_A 3lmv_A*
Length = 164
Score = 29.1 bits (66), Expect = 3.2
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 16/59 (27%)
Query: 407 DDDVEEDLE---EGLVLIRIAPDEQGRFGFNVKGGADLGMPILVV----------RGRR 452
+D ED + +R+ ++ + NVK DL +L+V +G +
Sbjct: 45 KNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVK---DLNYELLIVSQFTLFGNTKKGNK 100
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 29.8 bits (66), Expect = 3.7
Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 274 VVLINGCDVSGMHHEQVVNIIRTSRDTHGELVLTVRPNGKSRSTQRSIQISSDDNAKSSR 333
++ +N D + + E+ V + +T+ K +R ++ D+
Sbjct: 55 ILRVNNVDFTNIIREEAVLFLLDLPKG---EEVTILAQKKKDVYRRIVESDVGDSFYIRT 111
Query: 334 SLRYDNK 340
Y+ +
Sbjct: 112 HFEYEKE 118
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 29.8 bits (68), Expect = 4.0
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 429 GRFGFNVKGG 438
GRF FNVKGG
Sbjct: 630 GRFSFNVKGG 639
>1e6v_C Methyl-coenzyme M reductase I gamma subunit; biological
methanogenesis, NI-enzyme, oxidoreductase, NI enzyme;
HET: F43 TP7; 2.70A {Methanopyrus kandleri} SCOP:
d.58.31.1
Length = 258
Score = 29.1 bits (65), Expect = 4.7
Identities = 19/78 (24%), Positives = 32/78 (41%)
Query: 310 PNGKSRSTQRSIQISSDDNAKSSRSLRYDNKVTSLGSREPKRAWDPPHPSDDEGGFLDKP 369
P + R ++ + K R + ++ V +G REP + HP +E + P
Sbjct: 10 PGETDVAENRRKYMNPNYELKKLREIPDEDIVRLMGHREPGEEYPSVHPPLEEMEEPECP 69
Query: 370 PPGSAKLEEGEEAGPAIR 387
+ EG +AG IR
Sbjct: 70 IRELVEPTEGAKAGDRIR 87
>1hbn_C Methyl-coenzyme M reductase I gamma subunit; methanogenesis,
biological methanogenesis, NI-enzyme, oxidoreductase;
HET: MHS AGM MGN F43 TP7; 1.16A
{Methanothermobacterthermautotrophicus} SCOP: d.58.31.1
PDB: 1hbm_C* 1hbo_C* 1hbu_C* 3m1v_C* 3m2r_C* 3m2u_C*
3m2v_C* 3m30_C* 3m32_C* 3pot_C* 1mro_C*
Length = 248
Score = 29.1 bits (65), Expect = 4.9
Identities = 15/78 (19%), Positives = 29/78 (37%)
Query: 310 PNGKSRSTQRSIQISSDDNAKSSRSLRYDNKVTSLGSREPKRAWDPPHPSDDEGGFLDKP 369
P + R + + + R + ++ V LG R P + HP +E +
Sbjct: 5 PGTTKVAQNRRNFCNPEYELEKLREISDEDVVKILGHRAPGEEYPSVHPPLEEMDEPEDA 64
Query: 370 PPGSAKLEEGEEAGPAIR 387
+ +G +AG +R
Sbjct: 65 IREMVEPIDGAKAGDRVR 82
>1zld_A PTR TOXA, PTR necrosis toxin; beta-sandwich, RGD-motif; 1.65A
{Pyrenophora tritici-repentis} PDB: 1zle_A
Length = 118
Score = 27.7 bits (61), Expect = 5.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 549 INANTVAMEIPGSGIVNRYIATQGPLASTVGDFWHML 585
+NA+TV + I +G NR I TQ T GD + +
Sbjct: 51 VNADTVRVNIRNTGRTNRLIITQWDNTVTRGDVYELF 87
>3sqg_C Methyl-coenzyme M reductase, gamma subunit; anaerobic methane
oxidation, transferase; HET: MHS 0AF TP7 M43 1PE PGE
P6G; 2.10A {Uncultured archaeon}
Length = 279
Score = 28.8 bits (64), Expect = 6.6
Identities = 17/78 (21%), Positives = 25/78 (32%)
Query: 310 PNGKSRSTQRSIQISSDDNAKSSRSLRYDNKVTSLGSREPKRAWDPPHPSDDEGGFLDKP 369
+ R + + R + ++ V L R P + HP +E D
Sbjct: 6 AGNSHVAQNRRNYMDPSYKLEKLRDIPEEDIVRLLAHRAPGEEYKSIHPPLEEMEEPDCA 65
Query: 370 PPGSAKLEEGEEAGPAIR 387
K EG AG IR
Sbjct: 66 VRQIVKPTEGAAAGDRIR 83
>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine
phosphatase, P-loop, hydrolase; HET: PO4; 1.50A
{Autographa californicanucleopolyhedrovirus}
Length = 169
Score = 28.0 bits (62), Expect = 7.4
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 664 LAWPDHGVPDD--VNRFLAFTRQVRHERAGMVEPAIVHCSA 702
+ P +P + V F+ ++ + GM+ VHC+
Sbjct: 84 IQVPGQTLPPESIVQEFIDTVKEFTEKCPGML--VGVHCTH 122
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.412
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,058,579
Number of extensions: 687502
Number of successful extensions: 1818
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1607
Number of HSP's successfully gapped: 294
Length of query: 702
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 602
Effective length of database: 3,909,693
Effective search space: 2353635186
Effective search space used: 2353635186
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.5 bits)