BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17844
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 73/121 (60%), Gaps = 2/121 (1%)
Query: 5 IALGENVIEYNPQFRLYLTTKLRNPHYLPEVFNKVTVVNFALTVFGLEDQLLGIVVAKER 64
I LG+ ++++P F ++L T+ H+ P++ ++VT VNF +T L+ Q L + ER
Sbjct: 2384 IRLGDQDVDFSPSFMIFLFTRDPTAHFTPDLCSRVTFVNFTVTPSSLQSQCLHEALKTER 2443
Query: 65 PDLQTKRDELI-VQGASNKKALKEVEDMILHTLSSSTGNILEDPNAVDVLDSSKVHDSKI 123
PD KR +L+ +QG K L+ +E +L+ LS ++GNIL+D + + L++ K ++I
Sbjct: 2444 PDTHKKRSDLLKIQGEFQVK-LRILEKSLLNALSQASGNILDDDSVISTLETLKKETTEI 2502
Query: 124 G 124
Sbjct: 2503 A 2503
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 73/121 (60%), Gaps = 2/121 (1%)
Query: 5 IALGENVIEYNPQFRLYLTTKLRNPHYLPEVFNKVTVVNFALTVFGLEDQLLGIVVAKER 64
I LG+ ++++P F ++L T+ H+ P++ ++VT VNF +T L+ Q L + ER
Sbjct: 2262 IRLGDQDVDFSPSFMIFLFTRDPTAHFTPDLCSRVTFVNFTVTPSSLQSQCLHEALKTER 2321
Query: 65 PDLQTKRDELI-VQGASNKKALKEVEDMILHTLSSSTGNILEDPNAVDVLDSSKVHDSKI 123
PD KR +L+ +QG K L+ +E +L+ LS ++GNIL+D + + L++ K ++I
Sbjct: 2322 PDTHKKRSDLLKIQGEFQVK-LRILEKSLLNALSQASGNILDDDSVISTLETLKKETTEI 2380
Query: 124 G 124
Sbjct: 2381 A 2381
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 66/119 (55%), Gaps = 4/119 (3%)
Query: 1 NQEYIALGENVIEYNPQFRLYLTTKLRNPHYLPEVF--NKVTVVNFALTVFGLEDQLLGI 58
N+ + +G++ ++ + F+L++ + +P +F ++V +V+F +E ++ I
Sbjct: 2078 NRVTVEIGDHEVDVSGDFKLFIHSC--DPSGDIPIFLRSRVRLVHFVTNKESIETRIFDI 2135
Query: 59 VVAKERPDLQTKRDELIVQGASNKKALKEVEDMILHTLSSSTGNILEDPNAVDVLDSSK 117
+ +E ++Q KR++LI K LK +E +L L++S GN+LE+ + L++ K
Sbjct: 2136 TLTEENAEMQRKREDLIKLNTEYKLKLKNLEKRLLEELNNSQGNMLENDELMVTLNNLK 2194
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 66/119 (55%), Gaps = 4/119 (3%)
Query: 1 NQEYIALGENVIEYNPQFRLYLTTKLRNPHYLPEVF--NKVTVVNFALTVFGLEDQLLGI 58
N+ + +G++ ++ + F+L++ + +P +F ++V +V+F +E ++ I
Sbjct: 1869 NRVTVEIGDHEVDVSGDFKLFIHSC--DPSGDIPIFLRSRVRLVHFVTNKESIETRIFDI 1926
Query: 59 VVAKERPDLQTKRDELIVQGASNKKALKEVEDMILHTLSSSTGNILEDPNAVDVLDSSK 117
+ +E ++Q KR++LI + LK +E +L L++S GN+LE+ + L++ K
Sbjct: 1927 TLTEENAEMQRKREDLIKLNTEYRLKLKNLEKRLLEELNNSQGNMLENDELMVTLNNLK 1985
>pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At 1.50 Angstroms
pdb|2I6A|A Chain A, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|B Chain B, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|C Chain C, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|D Chain D, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6B|A Chain A, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
pdb|2I6B|B Chain B, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
Length = 345
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 11/65 (16%)
Query: 65 PDLQTKRDELIV--QGASNKKALKEVEDMILHTLSSSTGNILEDPNAVDVLDSSKVHDSK 122
P + +KR +++ QG +D I+ T S T + D + +++D++ D+
Sbjct: 252 PKMNSKRQRIVIFTQGR---------DDTIMATESEVTAFAVLDQDQKEIIDTNGAGDAF 302
Query: 123 IGGFI 127
+GGF+
Sbjct: 303 VGGFL 307
>pdb|3CV9|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (R73aR84A MUTANT) IN COMPLEX WITH 1ALPHA,25-
Dihydroxyvitamin D3
Length = 412
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 8/29 (27%), Positives = 22/29 (75%)
Query: 91 MILHTLSSSTGNILEDPNAVDVLDSSKVH 119
++++++++ G + EDP+A+D+ S++ H
Sbjct: 317 IVVNSIANRDGTVYEDPDALDIHRSARHH 345
>pdb|3CV8|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (R84f Mutant)
Length = 412
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 8/29 (27%), Positives = 22/29 (75%)
Query: 91 MILHTLSSSTGNILEDPNAVDVLDSSKVH 119
++++++++ G + EDP+A+D+ S++ H
Sbjct: 317 IVVNSIANRDGTVYEDPDALDIHRSARHH 345
>pdb|2ZBY|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (R84a Mutant)
pdb|2ZBZ|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (R84a Mutant) In Complex With
1,25-Dihydroxyvitamin D3
Length = 412
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 8/29 (27%), Positives = 22/29 (75%)
Query: 91 MILHTLSSSTGNILEDPNAVDVLDSSKVH 119
++++++++ G + EDP+A+D+ S++ H
Sbjct: 317 IVVNSIANRDGTVYEDPDALDIHRSARHH 345
>pdb|2ZBX|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (Wild Type) With Imidazole Bound
Length = 412
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 8/29 (27%), Positives = 22/29 (75%)
Query: 91 MILHTLSSSTGNILEDPNAVDVLDSSKVH 119
++++++++ G + EDP+A+D+ S++ H
Sbjct: 317 IVVNSIANRDGTVYEDPDALDIHRSARHH 345
>pdb|1FP4|A Chain A, Crystal Structure Of The Alpha-H195q Mutant Of Nitrogenase
pdb|1FP4|C Chain C, Crystal Structure Of The Alpha-H195q Mutant Of Nitrogenase
Length = 492
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 59 VVAKERPDLQTKRDELIVQGASNKKALKEVEDM 91
VVAK RP L+ KR L + G + + ED+
Sbjct: 338 VVAKYRPRLEGKRVMLYIGGLRPRHVIGAYEDL 370
>pdb|1G20|A Chain A, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|C Chain C, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|A Chain A, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|C Chain C, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|3U7Q|A Chain A, A. Vinelandii Nitrogenase Mofe Protein At Atomic
Resolution
pdb|3U7Q|C Chain C, A. Vinelandii Nitrogenase Mofe Protein At Atomic
Resolution
Length = 492
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 59 VVAKERPDLQTKRDELIVQGASNKKALKEVEDM 91
VVAK RP L+ KR L + G + + ED+
Sbjct: 338 VVAKYRPRLEGKRVMLYIGGLRPRHVIGAYEDL 370
>pdb|3K1A|A Chain A, Insights Into Substrate Binding At Femo-Cofactor In
Nitrogenase From The Structure Of An Alpha-70ile Mofe
Protein Variant
pdb|3K1A|C Chain C, Insights Into Substrate Binding At Femo-Cofactor In
Nitrogenase From The Structure Of An Alpha-70ile Mofe
Protein Variant
Length = 491
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 59 VVAKERPDLQTKRDELIVQGASNKKALKEVEDM 91
VVAK RP L+ KR L + G + + ED+
Sbjct: 337 VVAKYRPRLEGKRVMLYIGGLRPRHVIGAYEDL 369
>pdb|3MIN|A Chain A, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|3MIN|C Chain C, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|2MIN|A Chain A, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|2MIN|C Chain C, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|1N2C|A Chain A, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1N2C|C Chain C, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1L5H|A Chain A, Femo-Cofactor Deficient Nitrogenase Mofe Protein
pdb|1M1N|A Chain A, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1N|C Chain C, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1N|E Chain E, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1N|G Chain G, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1Y|A Chain A, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|C Chain C, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|I Chain I, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|K Chain K, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M34|A Chain A, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|C Chain C, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|I Chain I, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|K Chain K, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|2AFH|A Chain A, Crystal Structure Of Nucleotide-Free Av2-Av1 Complex
pdb|2AFH|C Chain C, Crystal Structure Of Nucleotide-Free Av2-Av1 Complex
pdb|2AFI|A Chain A, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|C Chain C, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|I Chain I, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|K Chain K, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFK|A Chain A, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|2AFK|C Chain C, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
Length = 491
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 59 VVAKERPDLQTKRDELIVQGASNKKALKEVEDM 91
VVAK RP L+ KR L + G + + ED+
Sbjct: 337 VVAKYRPRLEGKRVMLYIGGLRPRHVIGAYEDL 369
>pdb|3J0C|B Chain B, Models Of E1, E2 And Cp Of Venezuelan Equine Encephalitis
Virus Tc-83 Strain Restrained By A Near Atomic
Resolution Cryo-Em Map
pdb|3J0C|E Chain E, Models Of E1, E2 And Cp Of Venezuelan Equine Encephalitis
Virus Tc-83 Strain Restrained By A Near Atomic
Resolution Cryo-Em Map
pdb|3J0C|H Chain H, Models Of E1, E2 And Cp Of Venezuelan Equine Encephalitis
Virus Tc-83 Strain Restrained By A Near Atomic
Resolution Cryo-Em Map
pdb|3J0C|K Chain K, Models Of E1, E2 And Cp Of Venezuelan Equine Encephalitis
Virus Tc-83 Strain Restrained By A Near Atomic
Resolution Cryo-Em Map
Length = 423
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 12 IEYNPQFRLYLTTK--LRNPHYLPEVFNKVTVVNFALTVFGLE 52
++ +P+ YL T+ PHY E+ ++ V NF +T G E
Sbjct: 285 LKLHPKNPTYLITRQLADEPHYTHELISEPAVRNFTVTEKGWE 327
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,606,400
Number of Sequences: 62578
Number of extensions: 128868
Number of successful extensions: 285
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 272
Number of HSP's gapped (non-prelim): 26
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)