Query psy17844
Match_columns 127
No_of_seqs 102 out of 732
Neff 7.2
Searched_HMMs 46136
Date Sat Aug 17 00:28:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17844.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17844hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12781 AAA_9: ATP-binding dy 100.0 1.4E-41 3E-46 258.3 9.9 122 3-124 107-228 (228)
2 KOG3595|consensus 99.9 1.2E-21 2.6E-26 178.1 14.3 125 1-126 1178-1302(1395)
3 COG5245 DYN1 Dynein, heavy cha 99.3 1E-11 2.3E-16 112.6 10.5 126 1-126 2554-2679(3164)
4 PF03028 Dynein_heavy: Dynein 87.6 2.2 4.8E-05 37.3 6.9 55 13-69 199-253 (707)
5 PHA02244 ATPase-like protein 79.1 5.5 0.00012 32.9 5.5 53 4-57 208-270 (383)
6 TIGR02902 spore_lonB ATP-depen 70.8 43 0.00094 28.6 9.0 104 14-118 230-334 (531)
7 PF00943 Alpha_E2_glycop: Alph 64.3 2.7 6E-05 34.7 0.5 42 11-52 270-313 (403)
8 PRK07003 DNA polymerase III su 63.3 16 0.00034 33.2 5.0 64 14-78 146-209 (830)
9 PF09340 NuA4: Histone acetylt 61.9 30 0.00064 22.1 5.0 38 66-105 6-44 (80)
10 TIGR02640 gas_vesic_GvpN gas v 61.1 21 0.00045 27.3 4.9 49 10-58 144-196 (262)
11 PF13711 DUF4160: Domain of un 58.0 7.6 0.00017 23.6 1.6 22 17-38 1-22 (66)
12 PF04568 IATP: Mitochondrial A 57.0 23 0.00049 23.8 3.9 39 51-92 61-99 (100)
13 PF07106 TBPIP: Tat binding pr 56.2 46 0.001 23.7 5.7 55 67-126 77-131 (169)
14 PF03544 TonB_C: Gram-negative 55.4 8.3 0.00018 23.4 1.5 24 27-50 1-28 (79)
15 PHA00097 K protein K 53.0 8.3 0.00018 22.7 1.1 33 68-100 18-50 (56)
16 KOG1899|consensus 51.6 28 0.00062 30.9 4.5 44 42-91 153-196 (861)
17 PRK06581 DNA polymerase III su 49.9 36 0.00077 26.8 4.5 88 12-100 113-224 (263)
18 PF09602 PhaP_Bmeg: Polyhydrox 48.7 41 0.00089 24.6 4.4 60 47-107 27-86 (165)
19 PF12283 Protein_K: Bacterioph 44.9 19 0.0004 21.3 1.7 33 68-100 18-50 (56)
20 TIGR01613 primase_Cterm phage/ 41.0 1.7E+02 0.0037 22.7 7.4 40 9-49 164-206 (304)
21 PF12774 AAA_6: Hydrolytic ATP 40.3 68 0.0015 24.3 4.7 47 2-48 119-168 (231)
22 KOG2264|consensus 39.9 71 0.0015 28.3 5.1 53 43-95 74-126 (907)
23 PF13177 DNA_pol3_delta2: DNA 38.9 26 0.00057 24.8 2.2 31 14-45 129-159 (162)
24 PRK08451 DNA polymerase III su 35.0 2.6E+02 0.0057 24.2 7.9 62 14-76 144-205 (535)
25 TIGR03752 conj_TIGR03752 integ 33.5 1.4E+02 0.003 25.5 5.8 39 54-92 101-139 (472)
26 PF07957 DUF3294: Protein of u 30.6 87 0.0019 23.9 3.8 28 73-100 74-101 (216)
27 PHA00692 hypothetical protein 29.5 26 0.00055 21.4 0.7 9 12-20 35-43 (74)
28 PRK04132 replication factor C 28.9 1.2E+02 0.0025 27.9 5.0 52 14-67 657-709 (846)
29 PF05377 FlaC_arch: Flagella a 28.9 1.3E+02 0.0029 17.9 4.9 37 60-96 5-41 (55)
30 KOG3091|consensus 28.6 1.7E+02 0.0036 25.3 5.5 74 46-127 305-392 (508)
31 KOG2185|consensus 28.5 2.1E+02 0.0045 24.2 5.9 70 49-124 2-71 (486)
32 COG5271 MDN1 AAA ATPase contai 28.1 1.1E+02 0.0025 31.5 4.8 64 2-72 1640-1711(4600)
33 KOG0978|consensus 27.9 1.3E+02 0.0027 27.1 4.9 70 55-125 496-566 (698)
34 PF03961 DUF342: Protein of un 27.7 2.5E+02 0.0054 23.3 6.5 33 65-98 330-362 (451)
35 KOG4670|consensus 27.3 37 0.0008 29.4 1.5 17 15-31 531-547 (602)
36 PF09440 eIF3_N: eIF3 subunit 26.2 2.3E+02 0.0049 19.8 5.1 44 65-120 65-108 (133)
37 PRK07994 DNA polymerase III su 26.1 1.5E+02 0.0033 26.2 5.1 57 15-72 147-203 (647)
38 PF07989 Microtub_assoc: Micro 25.9 1E+02 0.0022 19.3 3.1 28 66-93 4-31 (75)
39 PF08647 BRE1: BRE1 E3 ubiquit 25.0 1.7E+02 0.0037 19.0 4.1 35 63-97 4-38 (96)
40 KOG3584|consensus 24.6 3.2E+02 0.007 22.1 6.2 36 80-122 309-344 (348)
41 PRK07276 DNA polymerase III su 24.6 81 0.0018 24.9 2.9 40 12-52 128-168 (290)
42 TIGR02794 tolA_full TolA prote 23.9 54 0.0012 26.6 1.8 25 27-51 274-298 (346)
43 PRK08058 DNA polymerase III su 23.3 98 0.0021 24.5 3.2 37 14-51 137-174 (329)
44 COG4869 PduL Propanediol utili 22.8 78 0.0017 23.6 2.3 22 4-25 169-190 (210)
45 PRK07399 DNA polymerase III su 22.5 84 0.0018 24.9 2.7 44 13-57 149-193 (314)
46 PRK14952 DNA polymerase III su 22.4 3.5E+02 0.0077 23.6 6.6 62 15-77 146-207 (584)
47 PF08534 Redoxin: Redoxin; In 22.3 83 0.0018 21.1 2.3 33 15-47 6-38 (146)
48 KOG1916|consensus 21.9 2.9E+02 0.0063 26.1 6.0 36 64-99 927-962 (1283)
49 PF04508 Pox_A_type_inc: Viral 21.8 1.2E+02 0.0026 14.9 2.5 15 78-92 3-17 (23)
50 PF11365 DUF3166: Protein of u 21.4 1.3E+02 0.0029 20.0 3.0 66 59-126 19-84 (96)
51 PRK14709 hypothetical protein; 21.0 82 0.0018 26.6 2.4 39 8-47 293-334 (469)
52 PF05524 PEP-utilisers_N: PEP- 20.9 2.6E+02 0.0057 18.5 5.1 50 66-115 32-88 (123)
53 PF14193 DUF4315: Domain of un 20.8 1.8E+02 0.004 18.7 3.5 42 76-117 15-61 (83)
54 COG1660 Predicted P-loop-conta 20.7 85 0.0018 25.0 2.3 33 6-39 169-202 (286)
55 cd00383 trans_reg_C Effector d 20.7 1.2E+02 0.0025 18.7 2.6 30 85-114 24-53 (95)
56 PF07821 Alpha-amyl_C2: Alpha- 20.3 1E+02 0.0023 18.6 2.1 20 2-23 28-50 (59)
57 KOG2035|consensus 20.1 3.1E+02 0.0067 22.3 5.3 57 13-70 153-209 (351)
No 1
>PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=100.00 E-value=1.4e-41 Score=258.33 Aligned_cols=122 Identities=56% Similarity=0.868 Sum_probs=113.6
Q ss_pred ceEEeCCeeeeecCCceEEEecCCCCCCCChhhhhceEEEEeeeChhhHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHH
Q psy17844 3 EYIALGENVIEYNPQFRLYLTTKLRNPHYLPEVFNKVTVVNFALTVFGLEDQLLGIVVAKERPDLQTKRDELIVQGASNK 82 (127)
Q Consensus 3 ~~i~igd~~i~~~~~Frl~l~t~~~~p~~~~~~~~~~tvinFtvt~~gLe~qlL~~vv~~e~p~Le~~r~~L~~~~~~~~ 82 (127)
++|++||+.|+|||+|||||+|+.+||||+|++++++++|||++|++||++|||+.+++.|+|+||++|.+|.++.++++
T Consensus 107 ~~i~igd~~v~~~~~FrL~L~T~~~~p~~~pe~~s~vtviNFtvt~~gLe~qll~~vv~~e~PeLe~~r~~L~~~~~~~k 186 (228)
T PF12781_consen 107 KFIKIGDKEVDYNPNFRLYLTTKLPNPHYPPEVSSKVTVINFTVTQEGLEDQLLSIVVKHERPELEEQRNELLKEIAENK 186 (228)
T ss_dssp SEEESSSSEEE--SS-EEEEEESSTTSHHHHHHHHCSEEEE----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred ceEEecCeEEEeeccceEEEeecCCCCCCChhhhceeeEEEEEecHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhhhhHHhhh
Q psy17844 83 KALKEVEDMILHTLSSSTGNILEDPNAVDVLDSSKVHDSKIG 124 (127)
Q Consensus 83 ~~L~~lE~~lL~~Ls~~~g~iLed~~Li~~L~~sK~~s~ei~ 124 (127)
.+|+++|++||+.|++++|+||||++||++|+.+|++|.+|+
T Consensus 187 ~~L~~lEd~lL~~Ls~s~g~iLed~~Li~~L~~sK~~a~~Ie 228 (228)
T PF12781_consen 187 IQLKELEDQLLELLSNSEGNILEDEELIETLESSKKTAAEIE 228 (228)
T ss_dssp HHHHHHHHHHHHHCCCTSSCCCCHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCccCcHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999985
No 2
>KOG3595|consensus
Probab=99.87 E-value=1.2e-21 Score=178.13 Aligned_cols=125 Identities=57% Similarity=0.822 Sum_probs=121.5
Q ss_pred CcceEEeCCeeeeecCCceEEEecCCCCCCCChhhhhceEEEEeeeChhhHHHHHHHHHHHhhCccHHHHHHHHHHHHHH
Q psy17844 1 NQEYIALGENVIEYNPQFRLYLTTKLRNPHYLPEVFNKVTVVNFALTVFGLEDQLLGIVVAKERPDLQTKRDELIVQGAS 80 (127)
Q Consensus 1 ~~~~i~igd~~i~~~~~Frl~l~t~~~~p~~~~~~~~~~tvinFtvt~~gLe~qlL~~vv~~e~p~Le~~r~~L~~~~~~ 80 (127)
|..++++||++++++++|++|++|+.+||||.|+++++++++||++|..|+++|+++.++..+.|+++.+|..++.+.+.
T Consensus 1178 ~~~~~~~gd~~~~~~~~f~~~~~t~~~~~~~~p~~~~~~~~v~f~~t~~~l~~qll~~v~~~e~~~~~~~~~~l~~~~~~ 1257 (1395)
T KOG3595|consen 1178 GRVLIKLGDKEIDLNPDFRLYITTKLRNPHYLPELSARVTLVNFTVTPSGLEDQLLGSVVAIERPDLEEERSDLIKLQAE 1257 (1395)
T ss_pred CeEeeecCceeeecCCCeeEEEeecccCcccChhhhhceeEEEeEechhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhhhhHHhhhcc
Q psy17844 81 NKKALKEVEDMILHTLSSSTGNILEDPNAVDVLDSSKVHDSKIGGF 126 (127)
Q Consensus 81 ~~~~L~~lE~~lL~~Ls~~~g~iLed~~Li~~L~~sK~~s~ei~~~ 126 (127)
++.+++++|+.+|..|+.++|++++|++++.+|+++|.++. |++|
T Consensus 1258 ~~~~lk~le~~lL~~l~~s~~~~l~~~~~~~~l~~~K~~~~-i~~k 1302 (1395)
T KOG3595|consen 1258 IKRQLKELEDRLLERLSSSEGNILEDDELIVTLESSKVEAA-IKEK 1302 (1395)
T ss_pred HHHHHHHHHHHHHHHHhcccCcccccHHHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999999999999999999999999998 7654
No 3
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=99.32 E-value=1e-11 Score=112.64 Aligned_cols=126 Identities=14% Similarity=0.086 Sum_probs=120.3
Q ss_pred CcceEEeCCeeeeecCCceEEEecCCCCCCCChhhhhceEEEEeeeChhhHHHHHHHHHHHhhCccHHHHHHHHHHHHHH
Q psy17844 1 NQEYIALGENVIEYNPQFRLYLTTKLRNPHYLPEVFNKVTVVNFALTVFGLEDQLLGIVVAKERPDLQTKRDELIVQGAS 80 (127)
Q Consensus 1 ~~~~i~igd~~i~~~~~Frl~l~t~~~~p~~~~~~~~~~tvinFtvt~~gLe~qlL~~vv~~e~p~Le~~r~~L~~~~~~ 80 (127)
|...+.||+.+|+..-.|.+|.++..+.-..+.-...++.++||+....|+|.|+++.+++.+.|.+..++..|......
T Consensus 2554 ~eV~v~i~~~eI~~S~~~~vf~~se~~Sgdm~~~~~k~l~~v~Fvs~v~~~ET~i~d~~~~~~~~~lf~~~~~l~~lk~~ 2633 (3164)
T COG5245 2554 SEVKVMINPPEIVRSTVEAVFWLSEGRSGDMGSIEWKQLIQVMFVSKVLGCETEIPDALEKLVSGPLFVHEKALNALKAC 2633 (3164)
T ss_pred ceEEEEECCCeeEEecceeEEEEeecCCCchhHHHHHHhHhhheehhhhhhhhhhhHHHHhhhccchhhhHHHHHHHHHh
Confidence 34578999999999999999999999887888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhhhhHHhhhcc
Q psy17844 81 NKKALKEVEDMILHTLSSSTGNILEDPNAVDVLDSSKVHDSKIGGF 126 (127)
Q Consensus 81 ~~~~L~~lE~~lL~~Ls~~~g~iLed~~Li~~L~~sK~~s~ei~~~ 126 (127)
++.+|..++.++|..|.++.|+++++|++...|.++|+.+.+|++.
T Consensus 2634 ~~l~L~~L~~~ll~~L~~s~~nm~~tDEI~vll~NlKk~~~~Ie~~ 2679 (3164)
T COG5245 2634 GSLFLWVLARYLLAKLMLSISNMEQTDEIAVLLHNLKKSRKEIEEE 2679 (3164)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccchHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999864
No 4
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=87.57 E-value=2.2 Score=37.30 Aligned_cols=55 Identities=22% Similarity=0.387 Sum_probs=38.1
Q ss_pred eecCCceEEEecCCCCCCCChhhhhceEEEEeeeChhhHHHHHHHHHHHhhCccHHH
Q psy17844 13 EYNPQFRLYLTTKLRNPHYLPEVFNKVTVVNFALTVFGLEDQLLGIVVAKERPDLQT 69 (127)
Q Consensus 13 ~~~~~Frl~l~t~~~~p~~~~~~~~~~tvinFtvt~~gLe~qlL~~vv~~e~p~Le~ 69 (127)
..|++|||||++ .+.|.+|..+..+...|-|- .+.|+..-|+...-....+.++.
T Consensus 199 ~~h~~FRL~lt~-~~~~~~P~~lL~~s~kv~~E-~p~gik~~l~~~~~~~~~~~~~~ 253 (707)
T PF03028_consen 199 EIHPNFRLFLTS-EPSPSFPISLLQSSIKVTYE-PPPGIKANLLRTYNSISQDFFEM 253 (707)
T ss_dssp TTSTT-EEEEEE-ESSTTS-HHHHHCSEEEEE----SSHHHHHHHHHCC--SCCHHH
T ss_pred ccccceEEEEEe-cCcccCCHHHHHcccceeeC-ChhHHHHHHHHHHHhhhhhhhhc
Confidence 569999999988 67888999888776666555 67789888888777766676655
No 5
>PHA02244 ATPase-like protein
Probab=79.10 E-value=5.5 Score=32.89 Aligned_cols=53 Identities=8% Similarity=0.212 Sum_probs=40.9
Q ss_pred eEEeCCeeeeecCCceEEEecCCCC----------CCCChhhhhceEEEEeeeChhhHHHHHHH
Q psy17844 4 YIALGENVIEYNPQFRLYLTTKLRN----------PHYLPEVFNKVTVVNFALTVFGLEDQLLG 57 (127)
Q Consensus 4 ~i~igd~~i~~~~~Frl~l~t~~~~----------p~~~~~~~~~~tvinFtvt~~gLe~qlL~ 57 (127)
++.+.+..+..||+||++.++.... ...++.+..|+.+|+|.--. ..|.++..
T Consensus 208 ~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~I~~dyp~-~~E~~i~~ 270 (383)
T PHA02244 208 FFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIEFDYDE-KIEHLISN 270 (383)
T ss_pred eEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEEeeCCCCc-HHHHHHhh
Confidence 5566777889999999999997532 34578888999999998854 67776654
No 6
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=70.85 E-value=43 Score=28.58 Aligned_cols=104 Identities=16% Similarity=0.131 Sum_probs=57.4
Q ss_pred ecCCceEEEecCCCCCCCChhhhhceEEEEeeeChhhHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17844 14 YNPQFRLYLTTKLRNPHYLPEVFNKVTVVNFALTVFGLEDQLLGIVVAKERPDLQTKRDELIVQGASNKKALKEVEDMIL 93 (127)
Q Consensus 14 ~~~~Frl~l~t~~~~p~~~~~~~~~~tvinFtvt~~gLe~qlL~~vv~~e~p~Le~~r~~L~~~~~~~~~~L~~lE~~lL 93 (127)
+..+||++..|...--..+|.+.+|+..+.|..-...=-..++...++.....++..--+++.....+-+.+.++=+..
T Consensus 230 ~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~n~Rel~nll~~A- 308 (531)
T TIGR02902 230 LPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYASNGREAVNIVQLA- 308 (531)
T ss_pred cccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhhhHHHHHHHHHHH-
Confidence 5678999988765444688999999988888653333234556666666665555444344333332222222222211
Q ss_pred HHhhcCCC-CCCCCHHHHHHHHhhhh
Q psy17844 94 HTLSSSTG-NILEDPNAVDVLDSSKV 118 (127)
Q Consensus 94 ~~Ls~~~g-~iLed~~Li~~L~~sK~ 118 (127)
..++..++ ..+..+++-..+..++-
T Consensus 309 a~~A~~~~~~~It~~dI~~vl~~~~~ 334 (531)
T TIGR02902 309 AGIALGEGRKRILAEDIEWVAENGNY 334 (531)
T ss_pred HHHHhhCCCcEEcHHHHHHHhCCccc
Confidence 11222222 35666777777765543
No 7
>PF00943 Alpha_E2_glycop: Alphavirus E2 glycoprotein; InterPro: IPR000936 Alphaviruses are enveloped RNA viruses that use arthropods such as mosquitoes for transmission to their vertebrate hosts, and include Semliki Forest and Sindbis viruses []. Alphaviruses consist of three structural proteins: the core nucleocapsid protein C, and the envelope proteins P62 and E1 (IPR002548 from INTERPRO) that associate as a heterodimer. The viral membrane-anchored surface glycoproteins are responsible for receptor recognition and entry into target cells through membrane fusion. The proteolytic maturation of P62 into E2 and E3 (IPR002533 from INTERPRO) causes a change in the viral surface. Together the E1, E2, and sometimes E3 glycoprotein "spikes" form an E1/E2 dimer or an E1/E2/E3 trimer, where E2 extends from the centre to the vertices, E1 fills the space between the vertices, and E3, if present, is at the distal end of the spike [, ]. Upon exposure of the virus to the acidity of the endosome, E1 dissociates from E2 to form an E1 homotrimer, which is necessary for the fusion step to drive the cellular and viral membranes together []. This entry represents the alphaviral E2 glycoprotein. The E2 glycoprotein functions to interact with the nucleocapsid through its cytoplasmic domain, while its ectodomain is responsible for binding a cellular receptor.; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2XFC_B 3N42_B 3N41_B 2XFB_E 3N40_P 3N43_B 3N44_B 3MUU_B 1Z8Y_P 3J0C_H ....
Probab=64.32 E-value=2.7 Score=34.70 Aligned_cols=42 Identities=31% Similarity=0.366 Sum_probs=32.7
Q ss_pred eeeecCCceEEEecCC--CCCCCChhhhhceEEEEeeeChhhHH
Q psy17844 11 VIEYNPQFRLYLTTKL--RNPHYLPEVFNKVTVVNFALTVFGLE 52 (127)
Q Consensus 11 ~i~~~~~Frl~l~t~~--~~p~~~~~~~~~~tvinFtvt~~gLe 52 (127)
.+-+||+.--+|+|+. ..|++..|--+.-+..||+|+.+|+|
T Consensus 270 ~L~Lhp~hPTLLt~R~Lg~~p~~t~eWI~~~~~r~~~V~~eG~E 313 (403)
T PF00943_consen 270 TLHLHPDHPTLLTTRSLGAEPEPTEEWITGPTERNFTVTEEGLE 313 (403)
T ss_dssp EEEEEESSEEEEEEEESSSS--EEEEEECSEEEEEEE-STT-EE
T ss_pred EEEEcCCCCceEEeeccCCCCCCcceeeecceEEEEEECCCceE
Confidence 3567899999999994 56888888889999999999999986
No 8
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=63.29 E-value=16 Score=33.19 Aligned_cols=64 Identities=16% Similarity=0.175 Sum_probs=47.1
Q ss_pred ecCCceEEEecCCCCCCCChhhhhceEEEEeeeChhhHHHHHHHHHHHhhCccHHHHHHHHHHHH
Q psy17844 14 YNPQFRLYLTTKLRNPHYLPEVFNKVTVVNFALTVFGLEDQLLGIVVAKERPDLQTKRDELIVQG 78 (127)
Q Consensus 14 ~~~~Frl~l~t~~~~p~~~~~~~~~~tvinFtvt~~gLe~qlL~~vv~~e~p~Le~~r~~L~~~~ 78 (127)
..++.+|+++|.... .+++.+.|||..++|.--...--.+.|..++..|.-+++.+--.++...
T Consensus 146 PP~~v~FILaTtd~~-KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~ 209 (830)
T PRK07003 146 PPPHVKFILATTDPQ-KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARA 209 (830)
T ss_pred cCCCeEEEEEECChh-hccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 456788888887543 6788899999999998765555566667778888877766666555544
No 9
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=61.86 E-value=30 Score=22.10 Aligned_cols=38 Identities=29% Similarity=0.368 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCC
Q psy17844 66 DLQTKRDELIVQGASNKKALKEVEDMILHTLSSS-TGNILE 105 (127)
Q Consensus 66 ~Le~~r~~L~~~~~~~~~~L~~lE~~lL~~Ls~~-~g~iLe 105 (127)
++-++|..|-......+.++-.+|-.-|. .++ -|||+-
T Consensus 6 ~l~~~k~~Le~~L~~lE~qIy~~Et~YL~--~~~~~GNiik 44 (80)
T PF09340_consen 6 ELLQKKKKLEKDLAALEKQIYDKETSYLE--DTSPYGNIIK 44 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccCcCCCCee
Confidence 56677888888888888888888888887 233 388863
No 10
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=61.12 E-value=21 Score=27.34 Aligned_cols=49 Identities=12% Similarity=0.276 Sum_probs=33.8
Q ss_pred eeeeecCCceEEEecCCCCC----CCChhhhhceEEEEeeeChhhHHHHHHHH
Q psy17844 10 NVIEYNPQFRLYLTTKLRNP----HYLPEVFNKVTVVNFALTVFGLEDQLLGI 58 (127)
Q Consensus 10 ~~i~~~~~Frl~l~t~~~~p----~~~~~~~~~~tvinFtvt~~gLe~qlL~~ 58 (127)
..+..||+||++.++..... ..++.+..|+..+.+..-...-|.+++..
T Consensus 144 ~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~ 196 (262)
T TIGR02640 144 RYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRA 196 (262)
T ss_pred ceEecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHH
Confidence 45779999999988854321 24677888888887777665555555554
No 11
>PF13711 DUF4160: Domain of unknown function (DUF4160)
Probab=57.97 E-value=7.6 Score=23.60 Aligned_cols=22 Identities=27% Similarity=0.452 Sum_probs=17.8
Q ss_pred CceEEEecCCCCCCCChhhhhc
Q psy17844 17 QFRLYLTTKLRNPHYLPEVFNK 38 (127)
Q Consensus 17 ~Frl~l~t~~~~p~~~~~~~~~ 38 (127)
+|++|+.+...++|-||.+.+.
T Consensus 1 G~~i~~ys~e~~dH~PpHvHv~ 22 (66)
T PF13711_consen 1 GIRIYFYSNEGNDHEPPHVHVR 22 (66)
T ss_pred CEEEEEEECCCCCCCCCeEEEE
Confidence 6899999988888888877544
No 12
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=56.97 E-value=23 Score=23.78 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17844 51 LEDQLLGIVVAKERPDLQTKRDELIVQGASNKKALKEVEDMI 92 (127)
Q Consensus 51 Le~qlL~~vv~~e~p~Le~~r~~L~~~~~~~~~~L~~lE~~l 92 (127)
-|++. +-+.|+-.|+.-|..+.++....++.|.++|+.|
T Consensus 61 ~E~~Y---~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 61 QEEQY---FRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45554 4467778888889999999999999999999876
No 13
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=56.17 E-value=46 Score=23.74 Aligned_cols=55 Identities=20% Similarity=0.157 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhhhhHHhhhcc
Q psy17844 67 LQTKRDELIVQGASNKKALKEVEDMILHTLSSSTGNILEDPNAVDVLDSSKVHDSKIGGF 126 (127)
Q Consensus 67 Le~~r~~L~~~~~~~~~~L~~lE~~lL~~Ls~~~g~iLed~~Li~~L~~sK~~s~ei~~~ 126 (127)
++.+..+|..+..+.+...+.++..+ ..|.+ -+-+++|.......++....+..|
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL-~~L~~----~~t~~el~~~i~~l~~e~~~l~~k 131 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAEL-ASLSS----EPTNEELREEIEELEEEIEELEEK 131 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhc----CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555443 33333 344555655555555555554443
No 14
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=55.43 E-value=8.3 Score=23.37 Aligned_cols=24 Identities=33% Similarity=0.492 Sum_probs=13.1
Q ss_pred CCCCCChhhhhc----eEEEEeeeChhh
Q psy17844 27 RNPHYLPEVFNK----VTVVNFALTVFG 50 (127)
Q Consensus 27 ~~p~~~~~~~~~----~tvinFtvt~~g 50 (127)
++|.||++...+ +..+.|.|+.+|
T Consensus 1 ~~~~YP~~a~~~~~~G~v~v~~~I~~~G 28 (79)
T PF03544_consen 1 PNPVYPEEARRRGIEGTVVVEFTIDPDG 28 (79)
T ss_dssp -S----CHHHHHTEEEEEEEEEEEETTT
T ss_pred CCCCCCHHHHHCCCeEEEEEEEEEeCCC
Confidence 467888766433 667788887766
No 15
>PHA00097 K protein K
Probab=52.96 E-value=8.3 Score=22.68 Aligned_cols=33 Identities=30% Similarity=0.507 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy17844 68 QTKRDELIVQGASNKKALKEVEDMILHTLSSST 100 (127)
Q Consensus 68 e~~r~~L~~~~~~~~~~L~~lE~~lL~~Ls~~~ 100 (127)
|--|.-|..+..+.+-+|+.+|.-+|+.|+-+.
T Consensus 18 elnrsgllveneeiqs~lk~le~lll~~lsps~ 50 (56)
T PHA00097 18 ELNRSGLLVENEEIQSQLKKLEKLLLCNLSPSS 50 (56)
T ss_pred hhccccceeccHHHHHHHHHHHHHHhhcCCCCc
Confidence 334556777788899999999999999998654
No 16
>KOG1899|consensus
Probab=51.56 E-value=28 Score=30.89 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=38.1
Q ss_pred EEeeeChhhHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17844 42 VNFALTVFGLEDQLLGIVVAKERPDLQTKRDELIVQGASNKKALKEVEDM 91 (127)
Q Consensus 42 inFtvt~~gLe~qlL~~vv~~e~p~Le~~r~~L~~~~~~~~~~L~~lE~~ 91 (127)
.+...|.+-|+.++++. .+||.|+-+|+.+..+.|.++..+|..
T Consensus 153 ~kLnatEEmLQqellsr------tsLETqKlDLmaevSeLKLkltalEke 196 (861)
T KOG1899|consen 153 NKLNATEEMLQQELLSR------TSLETQKLDLMAEVSELKLKLTALEKE 196 (861)
T ss_pred hhhchHHHHHHHHHHhh------hhHHHHHhHHHHHHHHhHHHHHHHHHH
Confidence 35667888888888885 789999999999999999999999943
No 17
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=49.87 E-value=36 Score=26.77 Aligned_cols=88 Identities=17% Similarity=0.240 Sum_probs=50.1
Q ss_pred eeecCCceEE-EecCCCCCCCChhhhhceEEEEeeeChhhH-------------HHHHHHHHHHhhCccHHH---HHHHH
Q psy17844 12 IEYNPQFRLY-LTTKLRNPHYLPEVFNKVTVVNFALTVFGL-------------EDQLLGIVVAKERPDLQT---KRDEL 74 (127)
Q Consensus 12 i~~~~~Frl~-l~t~~~~p~~~~~~~~~~tvinFtvt~~gL-------------e~qlL~~vv~~e~p~Le~---~r~~L 74 (127)
+|=.|....+ |.|.. -...+|-+.|||..++|....... .++.|+.+-+...-+.|+ --..+
T Consensus 113 LEEPP~~t~fILit~~-~~~LLpTIrSRCq~i~~~~p~~~~~~e~~~~~~~p~~~~~~l~~i~~~~~~d~~~w~~~~~~~ 191 (263)
T PRK06581 113 LEDAPKNSYIFLITSR-AASIISTIRSRCFKINVRSSILHAYNELYSQFIQPIADNKTLDFINRFTTKDRELWLDFIDNL 191 (263)
T ss_pred hcCCCCCeEEEEEeCC-hhhCchhHhhceEEEeCCCCCHHHHHHHHHHhcccccccHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3345555555 44543 336888999999999999766533 333344444433333322 11111
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy17844 75 -------IVQGASNKKALKEVEDMILHTLSSST 100 (127)
Q Consensus 75 -------~~~~~~~~~~L~~lE~~lL~~Ls~~~ 100 (127)
++....++..+..+|.++...|++..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (263)
T PRK06581 192 LLLMNRILKKSANFNIELLDLENKIFNKLSNRN 224 (263)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHhccCCC
Confidence 22234455667778888888887654
No 18
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=48.70 E-value=41 Score=24.62 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=44.2
Q ss_pred ChhhHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCH
Q psy17844 47 TVFGLEDQLLGIVVAKERPDLQTKRDELIVQGASNKKALKEVEDMILHTLSSSTGNILEDP 107 (127)
Q Consensus 47 t~~gLe~qlL~~vv~~e~p~Le~~r~~L~~~~~~~~~~L~~lE~~lL~~Ls~~~g~iLed~ 107 (127)
-..+++++.|.. ++..+--+-+.-.+|.....+.+....++..++.+.|+++.|+-+.|.
T Consensus 27 ~~kqve~~~l~~-lkqqqd~itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~ 86 (165)
T PF09602_consen 27 FMKQVEQQTLKK-LKQQQDWITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDS 86 (165)
T ss_pred HhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888776 555555566677777778888888888999999999977777655543
No 19
>PF12283 Protein_K: Bacteriophage protein K; InterPro: IPR020962 This family of proteins is found in the microviridae (isometric ssDNA phages) and are approximately 60 amino acids in length. The function of these proteins are unknown. In phi X174 site-directed mutagenesis of gene K produces small plaques on su- hosts. The mutant phage has an identical latent period, but a more reduced burst size than that of the wild-type phi X174. The reduced burst size in the gene K mutant suggests that the gene K protein, although not essential, has a role in increasing infectivity by increasing the burst size three to six fold [].
Probab=44.86 E-value=19 Score=21.26 Aligned_cols=33 Identities=30% Similarity=0.526 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy17844 68 QTKRDELIVQGASNKKALKEVEDMILHTLSSST 100 (127)
Q Consensus 68 e~~r~~L~~~~~~~~~~L~~lE~~lL~~Ls~~~ 100 (127)
|--|.-|..+..+.+-+|+++|.-+|+.|+-+.
T Consensus 18 elnrsgllvene~i~~~l~~le~lllr~lsps~ 50 (56)
T PF12283_consen 18 ELNRSGLLVENEEIQSQLKQLEKLLLRDLSPSS 50 (56)
T ss_pred HhcccccccccHHHHHHHHHHHHHHhhcCCCCc
Confidence 334556777788899999999999999998765
No 20
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=40.98 E-value=1.7e+02 Score=22.72 Aligned_cols=40 Identities=18% Similarity=0.362 Sum_probs=30.1
Q ss_pred CeeeeecCCceEEEecCCCCCCCC---hhhhhceEEEEeeeChh
Q psy17844 9 ENVIEYNPQFRLYLTTKLRNPHYL---PEVFNKVTVVNFALTVF 49 (127)
Q Consensus 9 d~~i~~~~~Frl~l~t~~~~p~~~---~~~~~~~tvinFtvt~~ 49 (127)
...+++.|.+++++.|.. .|.++ ..+.-|+.||.|..+..
T Consensus 164 k~~~~~~~~~~~i~~tN~-~P~~~~~~~a~~RR~~vi~f~~~~~ 206 (304)
T TIGR01613 164 KDPFEFTPKFTLVQSTNH-LPRIRGFDGGIKRRLRIIPFTKVFP 206 (304)
T ss_pred CCcEEEEEeeEEEEEcCC-CCccCCCChhheeeEEEEeccCcCC
Confidence 456889999999999963 55553 45567999999987654
No 21
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=40.32 E-value=68 Score=24.35 Aligned_cols=47 Identities=15% Similarity=0.192 Sum_probs=28.2
Q ss_pred cceEEeCCeeeeecCCceEEEecCC---CCCCCChhhhhceEEEEeeeCh
Q psy17844 2 QEYIALGENVIEYNPQFRLYLTTKL---RNPHYLPEVFNKVTVVNFALTV 48 (127)
Q Consensus 2 ~~~i~igd~~i~~~~~Frl~l~t~~---~~p~~~~~~~~~~tvinFtvt~ 48 (127)
...+.+.++.|.++|++.+|++... ...++|+.+.+....|.+..-.
T Consensus 119 ~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRpvam~~PD 168 (231)
T PF12774_consen 119 QKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFRPVAMMVPD 168 (231)
T ss_dssp SSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEEEE--S--
T ss_pred ccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhheeEEeCCC
Confidence 3457788999999999999987742 2245788888888888776644
No 22
>KOG2264|consensus
Probab=39.88 E-value=71 Score=28.32 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=43.6
Q ss_pred EeeeChhhHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17844 43 NFALTVFGLEDQLLGIVVAKERPDLQTKRDELIVQGASNKKALKEVEDMILHT 95 (127)
Q Consensus 43 nFtvt~~gLe~qlL~~vv~~e~p~Le~~r~~L~~~~~~~~~~L~~lE~~lL~~ 95 (127)
.|++.+.-.|.-=+...|..|--++|.+|++|-.+++++..++.++...|++.
T Consensus 74 ~~s~~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~ 126 (907)
T KOG2264|consen 74 GYSIGRILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQK 126 (907)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 46666665555556778899999999999999999999999999999888654
No 23
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=38.88 E-value=26 Score=24.81 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=22.4
Q ss_pred ecCCceEEEecCCCCCCCChhhhhceEEEEee
Q psy17844 14 YNPQFRLYLTTKLRNPHYLPEVFNKVTVVNFA 45 (127)
Q Consensus 14 ~~~~Frl~l~t~~~~p~~~~~~~~~~tvinFt 45 (127)
++++-+++|+|..++ ...|-+.||+.+++|.
T Consensus 129 pp~~~~fiL~t~~~~-~il~TI~SRc~~i~~~ 159 (162)
T PF13177_consen 129 PPENTYFILITNNPS-KILPTIRSRCQVIRFR 159 (162)
T ss_dssp TTTTEEEEEEES-GG-GS-HHHHTTSEEEEE-
T ss_pred CCCCEEEEEEECChH-HChHHHHhhceEEecC
Confidence 456778888886444 5788899999999985
No 24
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=34.97 E-value=2.6e+02 Score=24.17 Aligned_cols=62 Identities=11% Similarity=0.077 Sum_probs=39.4
Q ss_pred ecCCceEEEecCCCCCCCChhhhhceEEEEeeeChhhHHHHHHHHHHHhhCccHHHHHHHHHH
Q psy17844 14 YNPQFRLYLTTKLRNPHYLPEVFNKVTVVNFALTVFGLEDQLLGIVVAKERPDLQTKRDELIV 76 (127)
Q Consensus 14 ~~~~Frl~l~t~~~~p~~~~~~~~~~tvinFtvt~~gLe~qlL~~vv~~e~p~Le~~r~~L~~ 76 (127)
.++..+++++|..+ ...+|.+.+|+.++.|..-...--...+..++..+.-.++..--..+.
T Consensus 144 pp~~t~FIL~ttd~-~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia 205 (535)
T PRK08451 144 PPSYVKFILATTDP-LKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILA 205 (535)
T ss_pred cCCceEEEEEECCh-hhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 35667788888654 567788999999999986444333334555666666555444333333
No 25
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=33.49 E-value=1.4e+02 Score=25.55 Aligned_cols=39 Identities=13% Similarity=0.213 Sum_probs=26.8
Q ss_pred HHHHHHHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17844 54 QLLGIVVAKERPDLQTKRDELIVQGASNKKALKEVEDMI 92 (127)
Q Consensus 54 qlL~~vv~~e~p~Le~~r~~L~~~~~~~~~~L~~lE~~l 92 (127)
+=++..|..+++++.+++.+|..+..+.+..+.++.++|
T Consensus 101 ~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 101 QQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666777777777777777777777777776665
No 26
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=30.56 E-value=87 Score=23.95 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy17844 73 ELIVQGASNKKALKEVEDMILHTLSSST 100 (127)
Q Consensus 73 ~L~~~~~~~~~~L~~lE~~lL~~Ls~~~ 100 (127)
.|++...+.+.+|..+|++=.+.+.+|.
T Consensus 74 DLVQLV~ELQgQLd~lEeRsiRR~~NS~ 101 (216)
T PF07957_consen 74 DLVQLVGELQGQLDNLEERSIRRTVNST 101 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6788889999999999999999887765
No 27
>PHA00692 hypothetical protein
Probab=29.54 E-value=26 Score=21.42 Aligned_cols=9 Identities=56% Similarity=1.254 Sum_probs=8.0
Q ss_pred eeecCCceE
Q psy17844 12 IEYNPQFRL 20 (127)
Q Consensus 12 i~~~~~Frl 20 (127)
++|.|+||+
T Consensus 35 veyppgfrf 43 (74)
T PHA00692 35 VEYPPGFRF 43 (74)
T ss_pred EecCCCccc
Confidence 889999986
No 28
>PRK04132 replication factor C small subunit; Provisional
Probab=28.91 E-value=1.2e+02 Score=27.86 Aligned_cols=52 Identities=12% Similarity=0.289 Sum_probs=36.2
Q ss_pred ecCCceEEEecCCCCCCCChhhhhceEEEEeee-ChhhHHHHHHHHHHHhhCccH
Q psy17844 14 YNPQFRLYLTTKLRNPHYLPEVFNKVTVVNFAL-TVFGLEDQLLGIVVAKERPDL 67 (127)
Q Consensus 14 ~~~~Frl~l~t~~~~p~~~~~~~~~~tvinFtv-t~~gLe~qlL~~vv~~e~p~L 67 (127)
+.++.+++++|..+. ...|.+.|||.+++|.. +.+.+... |..+...|.-++
T Consensus 657 p~~~~~FILi~N~~~-kIi~tIrSRC~~i~F~~ls~~~i~~~-L~~I~~~Egi~i 709 (846)
T PRK04132 657 FSSNVRFILSCNYSS-KIIEPIQSRCAIFRFRPLRDEDIAKR-LRYIAENEGLEL 709 (846)
T ss_pred CCCCeEEEEEeCChh-hCchHHhhhceEEeCCCCCHHHHHHH-HHHHHHhcCCCC
Confidence 567888888887654 56677999999999965 45566555 455556555443
No 29
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=28.85 E-value=1.3e+02 Score=17.90 Aligned_cols=37 Identities=11% Similarity=0.294 Sum_probs=28.0
Q ss_pred HHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17844 60 VAKERPDLQTKRDELIVQGASNKKALKEVEDMILHTL 96 (127)
Q Consensus 60 v~~e~p~Le~~r~~L~~~~~~~~~~L~~lE~~lL~~L 96 (127)
+..+-|.++..-..+..+..+.+..+..+++++-..+
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777888888888888888888875544
No 30
>KOG3091|consensus
Probab=28.60 E-value=1.7e+02 Score=25.27 Aligned_cols=74 Identities=12% Similarity=0.236 Sum_probs=45.8
Q ss_pred eChhhHHHHHHHHHHHhhCcc--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHH
Q psy17844 46 LTVFGLEDQLLGIVVAKERPD--------------LQTKRDELIVQGASNKKALKEVEDMILHTLSSSTGNILEDPNAVD 111 (127)
Q Consensus 46 vt~~gLe~qlL~~vv~~e~p~--------------Le~~r~~L~~~~~~~~~~L~~lE~~lL~~Ls~~~g~iLed~~Li~ 111 (127)
+-|.|.-+++|..++ .++|+ |..+-+--.+....++.+|+.+++++ ..|.. ++.+.+.
T Consensus 305 ~kP~gVd~~~W~QA~-~dnp~s~kliPVpvvGF~dL~~R~K~Q~q~~~~~r~ri~~i~e~v-~eLqk------~~ad~~~ 376 (508)
T KOG3091|consen 305 TKPAGVDQRIWRQAM-KDNPPSNKLIPVPVVGFEDLRQRLKVQDQEVKQHRIRINAIGERV-TELQK------HHADAVA 376 (508)
T ss_pred CCCCCcCHHHHHHHh-hcCCCcccccceeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh------hhhhHHH
Confidence 456777788888887 22322 22222233344677888888888776 55543 3445566
Q ss_pred HHHhhhhhHHhhhccC
Q psy17844 112 VLDSSKVHDSKIGGFI 127 (127)
Q Consensus 112 ~L~~sK~~s~ei~~~~ 127 (127)
.++..|..-.+++.||
T Consensus 377 KI~~~k~r~~~Ls~Ri 392 (508)
T KOG3091|consen 377 KIEEAKNRHVELSHRI 392 (508)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777777777777775
No 31
>KOG2185|consensus
Probab=28.48 E-value=2.1e+02 Score=24.25 Aligned_cols=70 Identities=21% Similarity=0.210 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhhhhHHhhh
Q psy17844 49 FGLEDQLLGIVVAKERPDLQTKRDELIVQGASNKKALKEVEDMILHTLSSSTGNILEDPNAVDVLDSSKVHDSKIG 124 (127)
Q Consensus 49 ~gLe~qlL~~vv~~e~p~Le~~r~~L~~~~~~~~~~L~~lE~~lL~~Ls~~~g~iLed~~Li~~L~~sK~~s~ei~ 124 (127)
+.+..|++-+....++..=..+|.++.+....++.-|.-.| .+|.-+-... |+.++..+...+....+|.
T Consensus 2 Eny~aQll~veqaieq~~d~s~r~ellqlk~dl~ELlsLte-ellaaide~p-----~D~l~de~re~~~E~~D~~ 71 (486)
T KOG2185|consen 2 ENYDAQLLLVEQAIEQKEDLSSRDELLQLKPDLPELLSLTE-ELLAAIDEVP-----DDGLLDEKRERLLEEADIV 71 (486)
T ss_pred cchHHHHHHHHHHHHhhcchhHHHHHHHhCCcHHHHHHHHH-HHHHhhhcCC-----CcchHHHHHHHHhhhhhhh
Confidence 35678899988889999989999999999888887776666 5666665544 6677777777666666553
No 32
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=28.14 E-value=1.1e+02 Score=31.52 Aligned_cols=64 Identities=22% Similarity=0.437 Sum_probs=45.2
Q ss_pred cceEEeCCeeeeecCCceEEEecCCCCCC--------CChhhhhceEEEEeeeChhhHHHHHHHHHHHhhCccHHHHHH
Q psy17844 2 QEYIALGENVIEYNPQFRLYLTTKLRNPH--------YLPEVFNKVTVVNFALTVFGLEDQLLGIVVAKERPDLQTKRD 72 (127)
Q Consensus 2 ~~~i~igd~~i~~~~~Frl~l~t~~~~p~--------~~~~~~~~~tvinFtvt~~gLe~qlL~~vv~~e~p~Le~~r~ 72 (127)
..||.==|+..++||+||.|.+- ||. +|..+..|.+||- .+||.+-=+-.+.++-.|.++..+.
T Consensus 1640 eayIPEld~~f~~HpnfrVFAaq---NPq~qggGRKgLPkSF~nRFsvV~----~d~lt~dDi~~Ia~~~yp~v~~d~~ 1711 (4600)
T COG5271 1640 EAYIPELDKTFDVHPNFRVFAAQ---NPQDQGGGRKGLPKSFLNRFSVVK----MDGLTTDDITHIANKMYPQVNEDWR 1711 (4600)
T ss_pred ccccccccceeeccCCeeeeeec---CchhcCCCcccCCHHHhhhhheEE----ecccccchHHHHHHhhCCccChHHH
Confidence 34555568899999999999865 664 4455555666543 4666666677788888998877655
No 33
>KOG0978|consensus
Probab=27.93 E-value=1.3e+02 Score=27.08 Aligned_cols=70 Identities=14% Similarity=0.080 Sum_probs=54.0
Q ss_pred HHHHHHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCHHHHHHHHhhhhhHHhhhc
Q psy17844 55 LLGIVVAKERPDLQTKRDELIVQGASNKKALKEVEDMILHTLSSS-TGNILEDPNAVDVLDSSKVHDSKIGG 125 (127)
Q Consensus 55 lL~~vv~~e~p~Le~~r~~L~~~~~~~~~~L~~lE~~lL~~Ls~~-~g~iLed~~Li~~L~~sK~~s~ei~~ 125 (127)
-....+..+.-.|+++-..+..........+..+|+++ ..|++. .+.+.+...+...++..|..+.++.+
T Consensus 496 q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~-~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~ 566 (698)
T KOG0978|consen 496 QKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQE-RGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQ 566 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777888888888888888999876 556554 46778888899999999999988765
No 34
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=27.73 E-value=2.5e+02 Score=23.33 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=22.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17844 65 PDLQTKRDELIVQGASNKKALKEVEDMILHTLSS 98 (127)
Q Consensus 65 p~Le~~r~~L~~~~~~~~~~L~~lE~~lL~~Ls~ 98 (127)
|++..+...|..+..+.+.++..++..| ..+..
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l-~~l~~ 362 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNL-KKLKK 362 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhh
Confidence 6666677777777777777777777763 44433
No 35
>KOG4670|consensus
Probab=27.32 E-value=37 Score=29.38 Aligned_cols=17 Identities=35% Similarity=0.637 Sum_probs=15.4
Q ss_pred cCCceEEEecCCCCCCC
Q psy17844 15 NPQFRLYLTTKLRNPHY 31 (127)
Q Consensus 15 ~~~Frl~l~t~~~~p~~ 31 (127)
++.|.++++|+.+-|||
T Consensus 531 ~~~fc~~~vtknp~Phf 547 (602)
T KOG4670|consen 531 SPGFCVLAVTKNPPPHF 547 (602)
T ss_pred CcceEEEEecCCCCCce
Confidence 48999999999988997
No 36
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=26.20 E-value=2.3e+02 Score=19.78 Aligned_cols=44 Identities=30% Similarity=0.453 Sum_probs=26.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhhhhH
Q psy17844 65 PDLQTKRDELIVQGASNKKALKEVEDMILHTLSSSTGNILEDPNAVDVLDSSKVHD 120 (127)
Q Consensus 65 p~Le~~r~~L~~~~~~~~~~L~~lE~~lL~~Ls~~~g~iLed~~Li~~L~~sK~~s 120 (127)
+++.++|.+.+.+..+.+..-..+= .+++|++++..+.+-|...
T Consensus 65 ~e~~~kr~~Vl~~l~~l~~~~~~v~------------~~~~~~ev~~~l~~dk~~n 108 (133)
T PF09440_consen 65 AELAEKREEVLAELKELEEETEPVL------------ELLEDPEVVKNLRSDKKQN 108 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHcCHHHHHHHHccHHHH
Confidence 4566777777665554443332221 3778888888888755443
No 37
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=26.09 E-value=1.5e+02 Score=26.23 Aligned_cols=57 Identities=9% Similarity=0.068 Sum_probs=38.3
Q ss_pred cCCceEEEecCCCCCCCChhhhhceEEEEeeeChhhHHHHHHHHHHHhhCccHHHHHH
Q psy17844 15 NPQFRLYLTTKLRNPHYLPEVFNKVTVVNFALTVFGLEDQLLGIVVAKERPDLQTKRD 72 (127)
Q Consensus 15 ~~~Frl~l~t~~~~p~~~~~~~~~~tvinFtvt~~gLe~qlL~~vv~~e~p~Le~~r~ 72 (127)
.+..++++.|.. ...+++-+.+||..++|.-=...--.+.|..++..|.-..+..--
T Consensus 147 p~~v~FIL~Tt~-~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL 203 (647)
T PRK07994 147 PEHVKFLLATTD-PQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRAL 203 (647)
T ss_pred CCCeEEEEecCC-ccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 455677777754 346888899999999998765555555566666666655554433
No 38
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=25.91 E-value=1e+02 Score=19.35 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17844 66 DLQTKRDELIVQGASNKKALKEVEDMIL 93 (127)
Q Consensus 66 ~Le~~r~~L~~~~~~~~~~L~~lE~~lL 93 (127)
+.+++-..|.+++...+.++..+|+++-
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5678888999999999999999999986
No 39
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=25.04 E-value=1.7e+02 Score=19.00 Aligned_cols=35 Identities=23% Similarity=0.159 Sum_probs=17.8
Q ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17844 63 ERPDLQTKRDELIVQGASNKKALKEVEDMILHTLS 97 (127)
Q Consensus 63 e~p~Le~~r~~L~~~~~~~~~~L~~lE~~lL~~Ls 97 (127)
|-|.++..+..+..........+..+|+.++..-.
T Consensus 4 EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~ 38 (96)
T PF08647_consen 4 ELVSMEQAFKELSEQADKKVKELTILEQKKLRLEA 38 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555544433
No 40
>KOG3584|consensus
Probab=24.60 E-value=3.2e+02 Score=22.07 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhhhhHHh
Q psy17844 80 SNKKALKEVEDMILHTLSSSTGNILEDPNAVDVLDSSKVHDSK 122 (127)
Q Consensus 80 ~~~~~L~~lE~~lL~~Ls~~~g~iLed~~Li~~L~~sK~~s~e 122 (127)
+-|+..+-||+++ ..|-+ .|..||+.|..+|.....
T Consensus 309 KKKEYVKCLENRV-AVLEN------QNKaLIEELKtLKeLYc~ 344 (348)
T KOG3584|consen 309 KKKEYVKCLENRV-AVLEN------QNKALIEELKTLKELYCH 344 (348)
T ss_pred hHhHHHHHHHhHH-HHHhc------ccHHHHHHHHHHHHHhhc
Confidence 3445566777776 44433 268899999999987653
No 41
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=24.59 E-value=81 Score=24.94 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=25.9
Q ss_pred eeecCCce-EEEecCCCCCCCChhhhhceEEEEeeeChhhHH
Q psy17844 12 IEYNPQFR-LYLTTKLRNPHYLPEVFNKVTVVNFALTVFGLE 52 (127)
Q Consensus 12 i~~~~~Fr-l~l~t~~~~p~~~~~~~~~~tvinFtvt~~gLe 52 (127)
+|=.|... ++|+|..++ ...|-+.|||.++.|....+.+.
T Consensus 128 LEEPp~~t~~iL~t~~~~-~lLpTI~SRcq~i~f~~~~~~~~ 168 (290)
T PRK07276 128 IEEPQSEIYIFLLTNDEN-KVLPTIKSRTQIFHFPKNEAYLI 168 (290)
T ss_pred hcCCCCCeEEEEEECChh-hCchHHHHcceeeeCCCcHHHHH
Confidence 33345444 445564333 68888999999999977544433
No 42
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=23.87 E-value=54 Score=26.63 Aligned_cols=25 Identities=20% Similarity=0.081 Sum_probs=19.8
Q ss_pred CCCCCChhhhhceEEEEeeeChhhH
Q psy17844 27 RNPHYLPEVFNKVTVVNFALTVFGL 51 (127)
Q Consensus 27 ~~p~~~~~~~~~~tvinFtvt~~gL 51 (127)
.++.||+.....+++|+|+++++|.
T Consensus 274 ~~~~~p~~~~g~~v~V~I~L~pdG~ 298 (346)
T TIGR02794 274 QNLYDDPSFRGKTCRLRIRLAPDGT 298 (346)
T ss_pred hcCCCCcccCCCEEEEEEEECCCCC
Confidence 3556667666778999999999995
No 43
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=23.28 E-value=98 Score=24.55 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=26.4
Q ss_pred ecCCceEEEecCCCCCCCChhhhhceEEEEeee-ChhhH
Q psy17844 14 YNPQFRLYLTTKLRNPHYLPEVFNKVTVVNFAL-TVFGL 51 (127)
Q Consensus 14 ~~~~Frl~l~t~~~~p~~~~~~~~~~tvinFtv-t~~gL 51 (127)
.+++-.++++|..+. ...|.+.||+.++.|.. +.+.+
T Consensus 137 Pp~~~~~Il~t~~~~-~ll~TIrSRc~~i~~~~~~~~~~ 174 (329)
T PRK08058 137 PSGGTTAILLTENKH-QILPTILSRCQVVEFRPLPPESL 174 (329)
T ss_pred CCCCceEEEEeCChH-hCcHHHHhhceeeeCCCCCHHHH
Confidence 345556777776544 68888999999999974 44444
No 44
>COG4869 PduL Propanediol utilization protein [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.77 E-value=78 Score=23.60 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=17.7
Q ss_pred eEEeCCeeeeecCCceEEEecC
Q psy17844 4 YIALGENVIEYNPQFRLYLTTK 25 (127)
Q Consensus 4 ~i~igd~~i~~~~~Frl~l~t~ 25 (127)
-.-|+|-.|-++|+|.++|+-.
T Consensus 169 ~Lifd~v~iRv~~df~~emHiD 190 (210)
T COG4869 169 PLIFDDVVIRVSPDFALEMHID 190 (210)
T ss_pred ceeeeeEEEEEccccceeeecc
Confidence 3456677899999999999874
No 45
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=22.52 E-value=84 Score=24.93 Aligned_cols=44 Identities=23% Similarity=0.245 Sum_probs=30.5
Q ss_pred eecCCceEEEecCCCCCCCChhhhhceEEEEee-eChhhHHHHHHH
Q psy17844 13 EYNPQFRLYLTTKLRNPHYLPEVFNKVTVVNFA-LTVFGLEDQLLG 57 (127)
Q Consensus 13 ~~~~~Frl~l~t~~~~p~~~~~~~~~~tvinFt-vt~~gLe~qlL~ 57 (127)
+=.|+..++|+|..++ ...|.+.|||.++.|. ++.+.+.+.|-.
T Consensus 149 EEPp~~~fILi~~~~~-~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~ 193 (314)
T PRK07399 149 EEPGNGTLILIAPSPE-SLLPTIVSRCQIIPFYRLSDEQLEQVLKR 193 (314)
T ss_pred hCCCCCeEEEEECChH-hCcHHHHhhceEEecCCCCHHHHHHHHHH
Confidence 3345667778886443 6788899999999995 466655554444
No 46
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.44 E-value=3.5e+02 Score=23.61 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=40.1
Q ss_pred cCCceEEEecCCCCCCCChhhhhceEEEEeeeChhhHHHHHHHHHHHhhCccHHHHHHHHHHH
Q psy17844 15 NPQFRLYLTTKLRNPHYLPEVFNKVTVVNFALTVFGLEDQLLGIVVAKERPDLQTKRDELIVQ 77 (127)
Q Consensus 15 ~~~Frl~l~t~~~~p~~~~~~~~~~tvinFtvt~~gLe~qlL~~vv~~e~p~Le~~r~~L~~~ 77 (127)
.++..+++.|..+ ..+.+.+.+|+.++.|.--...--...|..++..+.-.++..--.++..
T Consensus 146 p~~~~fIL~tte~-~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~ 207 (584)
T PRK14952 146 PEHLIFIFATTEP-EKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIR 207 (584)
T ss_pred CCCeEEEEEeCCh-HhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3466777777433 4677889999999999755443334455667777766666554444433
No 47
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=22.32 E-value=83 Score=21.11 Aligned_cols=33 Identities=30% Similarity=0.294 Sum_probs=25.0
Q ss_pred cCCceEEEecCCCCCCCChhhhhceEEEEeeeC
Q psy17844 15 NPQFRLYLTTKLRNPHYLPEVFNKVTVVNFALT 47 (127)
Q Consensus 15 ~~~Frl~l~t~~~~p~~~~~~~~~~tvinFtvt 47 (127)
-|+|.+...+...++.-..++..+..||+|-.+
T Consensus 6 ~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~ 38 (146)
T PF08534_consen 6 APDFSLKDLDLDGKPVSLSDFKGKPVVVNFWAS 38 (146)
T ss_dssp --CCEEEEEETTSEEEEGGGGTTSEEEEEEEST
T ss_pred CCCeEEEeecCCCCEecHHHhCCCeEEEEEEcc
Confidence 378888876676776655668889999999988
No 48
>KOG1916|consensus
Probab=21.89 E-value=2.9e+02 Score=26.12 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=30.4
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy17844 64 RPDLQTKRDELIVQGASNKKALKEVEDMILHTLSSS 99 (127)
Q Consensus 64 ~p~Le~~r~~L~~~~~~~~~~L~~lE~~lL~~Ls~~ 99 (127)
+..=++.+..|.+..+++++++.++.++|++.|++.
T Consensus 927 ks~~d~~~~rl~e~la~~e~~~r~~~~qi~q~ltq~ 962 (1283)
T KOG1916|consen 927 KSNADALWARLQEELAKNEKALRDLQQQITQQLTQF 962 (1283)
T ss_pred HhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 333467788899999999999999999999999874
No 49
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=21.84 E-value=1.2e+02 Score=14.88 Aligned_cols=15 Identities=7% Similarity=0.189 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy17844 78 GASNKKALKEVEDMI 92 (127)
Q Consensus 78 ~~~~~~~L~~lE~~l 92 (127)
+...+.++.+||.+|
T Consensus 3 ~~rlr~rI~dLer~L 17 (23)
T PF04508_consen 3 MNRLRNRISDLERQL 17 (23)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666777777665
No 50
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=21.45 E-value=1.3e+02 Score=19.98 Aligned_cols=66 Identities=12% Similarity=0.198 Sum_probs=40.6
Q ss_pred HHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhhhhHHhhhcc
Q psy17844 59 VVAKERPDLQTKRDELIVQGASNKKALKEVEDMILHTLSSSTGNILEDPNAVDVLDSSKVHDSKIGGF 126 (127)
Q Consensus 59 vv~~e~p~Le~~r~~L~~~~~~~~~~L~~lE~~lL~~Ls~~~g~iLed~~Li~~L~~sK~~s~ei~~~ 126 (127)
++...-.+++.+...+..+.++|+-....... ...++...++.-....+-..|......+.+.+.|
T Consensus 19 LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~--~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls~k 84 (96)
T PF11365_consen 19 LLRRKLSELEDENKQLTEELNKYKSKYGDLDS--LAKLSEGGSPSGREAELQEELKLAREQINELSGK 84 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc--cccCCCCCCCccccHHHHHHHHHHHHHHHHHhhH
Confidence 34445567788888888888888877665554 1222222223444566777777777777766654
No 51
>PRK14709 hypothetical protein; Provisional
Probab=20.99 E-value=82 Score=26.58 Aligned_cols=39 Identities=21% Similarity=0.439 Sum_probs=29.1
Q ss_pred CCeeeeecCCceEEEecCCCCCCC---ChhhhhceEEEEeeeC
Q psy17844 8 GENVIEYNPQFRLYLTTKLRNPHY---LPEVFNKVTVVNFALT 47 (127)
Q Consensus 8 gd~~i~~~~~Frl~l~t~~~~p~~---~~~~~~~~tvinFtvt 47 (127)
+....+|.|.|++++.|... |.+ +..+.-|+.+|-|..+
T Consensus 293 ~k~~f~f~p~~kl~~~~N~~-P~~~d~d~g~~RR~~iIPF~~~ 334 (469)
T PRK14709 293 RQDFFEFVPQFKLTIVGNHK-PRLRNVDEAARRRFNIVPFTRK 334 (469)
T ss_pred cCCceEEEeeeEEEEEcCCC-CccCCCCceeEeeEEEEecCCC
Confidence 34568999999999988532 443 3455668999999987
No 52
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=20.92 E-value=2.6e+02 Score=18.46 Aligned_cols=50 Identities=18% Similarity=0.350 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-------CCCCCHHHHHHHHh
Q psy17844 66 DLQTKRDELIVQGASNKKALKEVEDMILHTLSSSTG-------NILEDPNAVDVLDS 115 (127)
Q Consensus 66 ~Le~~r~~L~~~~~~~~~~L~~lE~~lL~~Ls~~~g-------~iLed~~Li~~L~~ 115 (127)
+.+.+...+.......+.+|..+-+++=..+..... -||+|+.++.....
T Consensus 32 ~~~~E~~rl~~Al~~~~~eL~~l~~~~~~~~~~~~a~If~ah~~~L~D~~l~~~v~~ 88 (123)
T PF05524_consen 32 DIEAEIERLEQALEKAREELEQLAERAESKLGEEEAAIFEAHLMMLEDPELIDEVEE 88 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHSSCTHHHHHHHHHHT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcCHhHHHHHHH
Confidence 557777788888888888888888776555544443 46889888876643
No 53
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=20.76 E-value=1.8e+02 Score=18.68 Aligned_cols=42 Identities=17% Similarity=0.079 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHhhcCCCCCCCCHHHHHHHHhhh
Q psy17844 76 VQGASNKKALKEVEDMIL-----HTLSSSTGNILEDPNAVDVLDSSK 117 (127)
Q Consensus 76 ~~~~~~~~~L~~lE~~lL-----~~Ls~~~g~iLed~~Li~~L~~sK 117 (127)
..+++++.+|+.||.+.- ..+.-..+-=+..++|-.-|...+
T Consensus 15 ~Kiae~Q~rlK~Le~qk~E~EN~EIv~~VR~~~mtp~eL~~~L~~~~ 61 (83)
T PF14193_consen 15 EKIAELQARLKELEAQKTEAENLEIVQMVRSMKMTPEELAAFLRAMK 61 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 446666667777766541 111111233355555555555443
No 54
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=20.74 E-value=85 Score=24.97 Aligned_cols=33 Identities=27% Similarity=0.426 Sum_probs=21.1
Q ss_pred EeC-CeeeeecCCceEEEecCCCCCCCChhhhhce
Q psy17844 6 ALG-ENVIEYNPQFRLYLTTKLRNPHYLPEVFNKV 39 (127)
Q Consensus 6 ~ig-d~~i~~~~~Frl~l~t~~~~p~~~~~~~~~~ 39 (127)
.|| ...|+.+.||=+=+-. +|||||-|++...+
T Consensus 169 SFGFKyGiP~DADlVFDVRf-LPNP~y~peLRp~t 202 (286)
T COG1660 169 SFGFKYGIPIDADLVFDVRF-LPNPHYDPELRPLT 202 (286)
T ss_pred ecccccCCCCCcceEEEecc-cCCCccccccCcCC
Confidence 344 3446666665444333 89999999998543
No 55
>cd00383 trans_reg_C Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and a response regulator. The former autophosphorylates in a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. The C-terminal effector domain contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunite of RNA polymerase.
Probab=20.74 E-value=1.2e+02 Score=18.68 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCHHHHHHHH
Q psy17844 85 LKEVEDMILHTLSSSTGNILEDPNAVDVLD 114 (127)
Q Consensus 85 L~~lE~~lL~~Ls~~~g~iLed~~Li~~L~ 114 (127)
|..-|-.||..|....|.++.-+++++.+-
T Consensus 24 Lt~~e~~lL~~L~~~~~~~vs~~~l~~~lw 53 (95)
T cd00383 24 LTPKEFELLELLARNPGRVLSREQLLEAVW 53 (95)
T ss_pred eCHHHHHHHHHHHhCCCCcCCHHHHHHHhc
Confidence 445677788888888888888888877773
No 56
>PF07821 Alpha-amyl_C2: Alpha-amylase C-terminal beta-sheet domain; InterPro: IPR012850 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C terminus. This domain is organised as a five-stranded anti-parallel beta-sheet [, ]. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0005975 carbohydrate metabolic process; PDB: 1AVA_B 1BG9_A 1AMY_A 1RP8_A 2QPU_A 3BSG_A 2QPS_A 3BSH_A 1RP9_A 1HT6_A ....
Probab=20.28 E-value=1e+02 Score=18.59 Aligned_cols=20 Identities=15% Similarity=0.549 Sum_probs=11.3
Q ss_pred cceEEeCCeeeeecC---CceEEEe
Q psy17844 2 QEYIALGENVIEYNP---QFRLYLT 23 (127)
Q Consensus 2 ~~~i~igd~~i~~~~---~Frl~l~ 23 (127)
+..|+||.+ ++.| +|++..+
T Consensus 28 kv~~KiGp~--~~~P~~~~w~~a~~ 50 (59)
T PF07821_consen 28 KVIMKIGPR--DWSPSGSGWKLAAS 50 (59)
T ss_dssp TEEEEESS---GGS---TTEEEEEE
T ss_pred eEEEEECCC--ccccCCCCcEEEeE
Confidence 567888877 4544 6665543
No 57
>KOG2035|consensus
Probab=20.05 E-value=3.1e+02 Score=22.34 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=43.4
Q ss_pred eecCCceEEEecCCCCCCCChhhhhceEEEEeeeChhhHHHHHHHHHHHhhCccHHHH
Q psy17844 13 EYNPQFRLYLTTKLRNPHYLPEVFNKVTVVNFALTVFGLEDQLLGIVVAKERPDLQTK 70 (127)
Q Consensus 13 ~~~~~Frl~l~t~~~~p~~~~~~~~~~tvinFtvt~~gLe~qlL~~vv~~e~p~Le~~ 70 (127)
-|..+-|++|+.....+-..| +.+||-.|+-..-.+.=-...|+.+++.|.=.+.+.
T Consensus 153 kYs~~~RlIl~cns~SriIep-IrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~ 209 (351)
T KOG2035|consen 153 KYSSNCRLILVCNSTSRIIEP-IRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKE 209 (351)
T ss_pred HHhcCceEEEEecCcccchhH-HhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHH
Confidence 377889999999766655544 899999999876655555667888888888777643
Done!