Query psy17844
Match_columns 127
No_of_seqs 102 out of 732
Neff 7.2
Searched_HMMs 29240
Date Sat Aug 17 00:28:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17844.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17844hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4akg_A Glutathione S-transfera 100.0 3.3E-40 1.1E-44 308.6 13.6 127 1-127 2078-2204(2695)
2 3vkg_A Dynein heavy chain, cyt 100.0 1.5E-39 5E-44 306.1 9.5 127 1-127 2258-2384(3245)
3 3j0f_I E2 envelope glycoprotei 77.6 1.4 4.9E-05 35.3 2.8 48 5-52 276-327 (423)
4 2xfc_B E2 envelope glycoprotei 72.4 1.4 4.8E-05 35.4 1.5 48 5-52 276-327 (423)
5 3n40_P P62 envelope glycoprote 71.9 1.4 4.8E-05 35.1 1.4 48 5-52 336-387 (401)
6 3j0c_B E2 envelope glycoprotei 71.8 1.4 4.8E-05 35.4 1.4 48 5-52 276-327 (423)
7 2yew_C E2 envelope glycoprotei 68.2 1.3 4.5E-05 35.5 0.5 48 5-52 274-325 (421)
8 4akg_A Glutathione S-transfera 62.4 5 0.00017 39.3 3.3 46 13-59 2469-2514(2695)
9 3t97_B Nuclear pore complex pr 59.5 24 0.00081 21.0 4.9 40 59-98 14-53 (65)
10 3vkg_A Dynein heavy chain, cyt 44.5 7.8 0.00027 38.7 1.5 45 13-59 2723-2767(3245)
11 2oqq_A Transcription factor HY 43.6 39 0.0013 18.3 4.1 25 66-90 7-31 (42)
12 1u07_A TONB protein; beta-hair 41.7 19 0.00065 21.8 2.6 24 27-50 10-37 (90)
13 3muu_A Structural polyprotein; 41.4 4.3 0.00015 34.7 -0.7 48 5-52 276-327 (750)
14 1gmj_A ATPase inhibitor; coile 34.2 58 0.002 20.3 3.9 32 61-92 36-67 (84)
15 2yy0_A C-MYC-binding protein; 27.0 28 0.00095 19.7 1.4 20 63-82 27-46 (53)
16 2k9k_A TONB2; metal transport; 26.8 37 0.0013 21.1 2.2 25 26-50 24-52 (106)
17 1sxj_E Activator 1 40 kDa subu 25.4 1.3E+02 0.0043 22.1 5.3 54 14-68 161-214 (354)
18 1g8p_A Magnesium-chelatase 38 25.4 1.6E+02 0.0056 21.3 5.9 52 8-59 178-231 (350)
19 3bas_A Myosin heavy chain, str 24.0 1.3E+02 0.0045 18.4 4.3 31 62-92 35-65 (89)
20 1r6b_X CLPA protein; AAA+, N-t 23.5 1E+02 0.0034 25.8 4.7 41 8-49 590-655 (758)
21 1eij_A Hypothetical protein MT 22.6 1E+02 0.0034 18.9 3.4 34 86-119 37-71 (80)
22 2chq_A Replication factor C sm 22.0 1.7E+02 0.0057 20.8 5.3 54 14-68 129-182 (319)
23 1l8d_A DNA double-strand break 20.5 1.6E+02 0.0056 18.2 5.6 43 65-108 13-61 (112)
24 3pxi_A Negative regulator of g 20.3 1.3E+02 0.0045 25.1 4.9 41 7-48 611-663 (758)
No 1
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=3.3e-40 Score=308.57 Aligned_cols=127 Identities=23% Similarity=0.383 Sum_probs=124.7
Q ss_pred CcceEEeCCeeeeecCCceEEEecCCCCCCCChhhhhceEEEEeeeChhhHHHHHHHHHHHhhCccHHHHHHHHHHHHHH
Q psy17844 1 NQEYIALGENVIEYNPQFRLYLTTKLRNPHYLPEVFNKVTVVNFALTVFGLEDQLLGIVVAKERPDLQTKRDELIVQGAS 80 (127)
Q Consensus 1 ~~~~i~igd~~i~~~~~Frl~l~t~~~~p~~~~~~~~~~tvinFtvt~~gLe~qlL~~vv~~e~p~Le~~r~~L~~~~~~ 80 (127)
|+.+|++||++|||||+|||||+||++||||+|+++++||+||||||++|||+|||+.||+.|+|+||++|.+|+++.++
T Consensus 2078 g~~~i~lGdk~idy~~~FrlyltTkl~np~y~Pei~~~vt~iNFtvT~~GLedQLL~~vv~~ErPdLE~~r~~Li~~~~~ 2157 (2695)
T 4akg_A 2078 NRVTVEIGDHEVDVSGDFKLFIHSCDPSGDIPIFLRSRVRLVHFVTNKESIETRIFDITLTEENAEMQRKREDLIKLNTE 2157 (2695)
T ss_dssp SCEEEECSSSEEECCSSCEEEEEECCTTCCCCHHHHHHEEEEECCCCSHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCeeEecCCCceEEEeeCCCCCCCCHHHHhheeEEEEEEcHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhhhhHHhhhccC
Q psy17844 81 NKKALKEVEDMILHTLSSSTGNILEDPNAVDVLDSSKVHDSKIGGFI 127 (127)
Q Consensus 81 ~~~~L~~lE~~lL~~Ls~~~g~iLed~~Li~~L~~sK~~s~ei~~~~ 127 (127)
++++|+++||+||..|++++|+||||++||++|+++|.+|.||++|+
T Consensus 2158 ~k~~Lk~lEd~lL~~Ls~s~GniLdd~~lI~~L~~sK~~a~eI~~kl 2204 (2695)
T 4akg_A 2158 YKLKLKNLEKRLLEELNNSQGNMLENDELMVTLNNLKKEAMNIEKKL 2204 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSSCSTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999873
No 2
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=1.5e-39 Score=306.11 Aligned_cols=127 Identities=30% Similarity=0.529 Sum_probs=109.7
Q ss_pred CcceEEeCCeeeeecCCceEEEecCCCCCCCChhhhhceEEEEeeeChhhHHHHHHHHHHHhhCccHHHHHHHHHHHHHH
Q psy17844 1 NQEYIALGENVIEYNPQFRLYLTTKLRNPHYLPEVFNKVTVVNFALTVFGLEDQLLGIVVAKERPDLQTKRDELIVQGAS 80 (127)
Q Consensus 1 ~~~~i~igd~~i~~~~~Frl~l~t~~~~p~~~~~~~~~~tvinFtvt~~gLe~qlL~~vv~~e~p~Le~~r~~L~~~~~~ 80 (127)
|+.+|++||++|||||+|||||+||++||||+|+++++||+||||||++|||+|||+.||..|+|+||++|.+|+++.++
T Consensus 2258 g~~~I~lGdk~idy~~~FrlyltTkl~np~y~Pev~~kvtlINFtvT~~GLedQLL~~vv~~ErPeLE~~r~~Li~~~~~ 2337 (3245)
T 3vkg_A 2258 GRILIRLGDQDVDFSPSFMIFLFTRDPTAHFTPDLCSRVTFVNFTVTPSSLQSQCLHEALKTERPDTHKKRSDLLKIQGE 2337 (3245)
T ss_dssp ----------------CCCEEEEECCTTCCCCHHHHHTSEEEECCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTTHH
T ss_pred ceEEEEECCeeEecCCCceEEEEecCCCCCCCHHHHhheEEEEEEecHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhhhhHHhhhccC
Q psy17844 81 NKKALKEVEDMILHTLSSSTGNILEDPNAVDVLDSSKVHDSKIGGFI 127 (127)
Q Consensus 81 ~~~~L~~lE~~lL~~Ls~~~g~iLed~~Li~~L~~sK~~s~ei~~~~ 127 (127)
++++|++|||+||..|++++|+||||++||++|+++|.+|.+|++|+
T Consensus 2338 ~k~~L~~LEd~lL~~Ls~s~GniLdd~~LI~~L~~sK~~s~eI~~kl 2384 (3245)
T 3vkg_A 2338 FQVKLRILEKSLLNALSQASGNILDDDSVISTLETLKKETTEIALKV 2384 (3245)
T ss_dssp HHHHHHTTTHHHHHHHHTTSSCGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999873
No 3
>3j0f_I E2 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1z8y_J
Probab=77.64 E-value=1.4 Score=35.34 Aligned_cols=48 Identities=29% Similarity=0.315 Sum_probs=39.5
Q ss_pred EEeCCe--eeeecCCceEEEecCC--CCCCCChhhhhceEEEEeeeChhhHH
Q psy17844 5 IALGEN--VIEYNPQFRLYLTTKL--RNPHYLPEVFNKVTVVNFALTVFGLE 52 (127)
Q Consensus 5 i~igd~--~i~~~~~Frl~l~t~~--~~p~~~~~~~~~~tvinFtvt~~gLe 52 (127)
|..|-+ .+-+||+.--+|+|+. .+|++..|--+.-+..||+|+.+|+|
T Consensus 276 v~~~~r~vtL~Lhp~hPTLLTtR~LG~~p~~t~EWI~~~~~rnf~V~~eG~E 327 (423)
T 3j0f_I 276 VIHGFKHISLQLDTDHLTLLTTRRLGANPEPTTEWIVGKTVRNFTVDRDGLE 327 (423)
T ss_pred eEeccceEEEEecCCCCceEEEeccCCCCCCchhheecceEEEEEECCcceE
Confidence 444433 4678899999999994 56889999999999999999999987
No 4
>2xfc_B E2 envelope glycoprotein; receptor binding, membrane fusion, icosahedral envelo; 9.00A {Chikungunya virus}
Probab=72.42 E-value=1.4 Score=35.38 Aligned_cols=48 Identities=23% Similarity=0.376 Sum_probs=39.4
Q ss_pred EEeCCe--eeeecCCceEEEecCC--CCCCCChhhhhceEEEEeeeChhhHH
Q psy17844 5 IALGEN--VIEYNPQFRLYLTTKL--RNPHYLPEVFNKVTVVNFALTVFGLE 52 (127)
Q Consensus 5 i~igd~--~i~~~~~Frl~l~t~~--~~p~~~~~~~~~~tvinFtvt~~gLe 52 (127)
|..|-+ .+-+||+.--+|+|+. ..|++..|--+.-+..||+|+.+|+|
T Consensus 276 v~~~~r~v~L~Lhp~hPTLLTtR~LG~~p~~t~EWI~~~~~rnf~V~~eG~E 327 (423)
T 2xfc_B 276 VTYGKNQVIMLLYPDHPTLLSYRNMGEEPNYQEEWVMHKKEVVLTVPTEGLE 327 (423)
T ss_dssp EEEETTEEEEEECCSSCEEEEEEC-CCCCCCEEEEECSCEEEEEECCTTCEE
T ss_pred eEeccceEEEEecCCCCceEEEeccCCCCCCcceeeecceEEEEEeCCCceE
Confidence 444433 4678999999999995 56889889889999999999999986
No 5
>3n40_P P62 envelope glycoprotein; viral protein, immature heterodimer, alphavirus, receptor BI membrane fusion; HET: NAG NDG; 2.17A {Chikungunya virus} PDB: 3n44_B* 3n41_B* 3n42_B* 3n43_B* 2xfb_B 3n44_A* 3n41_A* 3n42_A* 3n43_A*
Probab=71.94 E-value=1.4 Score=35.14 Aligned_cols=48 Identities=23% Similarity=0.376 Sum_probs=39.4
Q ss_pred EEeCCe--eeeecCCceEEEecCC--CCCCCChhhhhceEEEEeeeChhhHH
Q psy17844 5 IALGEN--VIEYNPQFRLYLTTKL--RNPHYLPEVFNKVTVVNFALTVFGLE 52 (127)
Q Consensus 5 i~igd~--~i~~~~~Frl~l~t~~--~~p~~~~~~~~~~tvinFtvt~~gLe 52 (127)
|..|-+ .+-+||+.--+|+|+. .+|++..|.-+.-+..||+|+.+|+|
T Consensus 336 v~~~~r~vtL~Lhp~hPTLLTtR~LG~~p~~t~EWI~~~~~rnf~V~~eG~E 387 (401)
T 3n40_P 336 VTYGKNQVIMLLYPDHPTLLSYRNMGEEPNYQEEWVMHKKEVVLTVPTEGLE 387 (401)
T ss_dssp EEEETTEEEEEECCSSCEEEEEEESSSCCCCEEEEECSCEEEEEECCTTCEE
T ss_pred eEeccceEEEEecCCCCceEEEeccCCCCCCcceeeecceEEEEEeCCCceE
Confidence 444433 4678899999999994 66889889999999999999999986
No 6
>3j0c_B E2 envelope glycoprotein; alphavirus, bioweapon; 4.80A {Venezuelan equine encephalitis virus}
Probab=71.82 E-value=1.4 Score=35.36 Aligned_cols=48 Identities=33% Similarity=0.561 Sum_probs=39.4
Q ss_pred EEeCCe--eeeecCCceEEEecCC--CCCCCChhhhhceEEEEeeeChhhHH
Q psy17844 5 IALGEN--VIEYNPQFRLYLTTKL--RNPHYLPEVFNKVTVVNFALTVFGLE 52 (127)
Q Consensus 5 i~igd~--~i~~~~~Frl~l~t~~--~~p~~~~~~~~~~tvinFtvt~~gLe 52 (127)
|..|-+ .+-+||+.--+|+|+. .+|++..|--+.-+..||+|+.+|+|
T Consensus 276 v~~~~r~vtL~Lhp~hPTLLTtR~LG~~p~~t~EWI~~~~~rnf~V~~eG~E 327 (423)
T 3j0c_B 276 ITFGFRSVSLKLHPKNPTYLITRQLADEPHYTHELISEPAVRNFTVTEKGWE 327 (423)
T ss_dssp EEEETTEEEEEECCSSCEEEEEEESSSCCCCEEEEECSCEEEEEECCTTCEE
T ss_pred eEeccceEEEEecCCCCceEEEeccCCCCCCcceeeecceEEEEEECCcceE
Confidence 444433 3678899999999994 66889989999999999999999986
No 7
>2yew_C E2 envelope glycoprotein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus}
Probab=68.18 E-value=1.3 Score=35.52 Aligned_cols=48 Identities=10% Similarity=0.254 Sum_probs=39.2
Q ss_pred EEeCCe--eeeecCCceEEEecCC--CCCCCChhhhhceEEEEeeeChhhHH
Q psy17844 5 IALGEN--VIEYNPQFRLYLTTKL--RNPHYLPEVFNKVTVVNFALTVFGLE 52 (127)
Q Consensus 5 i~igd~--~i~~~~~Frl~l~t~~--~~p~~~~~~~~~~tvinFtvt~~gLe 52 (127)
|..|-+ .+-+||+.--+|+|+. ..|++..|--+.-+..||+|+.+|+|
T Consensus 274 v~~~~r~v~L~lhp~hPTLLTtR~LG~~p~~t~EWI~~~~~rnf~V~~eG~E 325 (421)
T 2yew_C 274 VTYRLGEVEFHFHPMYPTLFSIRSLGKDPSHSQEWIDTPMSKTIQVGAEGVE 325 (421)
T ss_dssp EEEETTEEEEEECCCSCEEEEEECSSSSCCEEEEEECSCEEEEECCCSSCEE
T ss_pred eEeccceEEEEecCCCCceEEEeccCCCCCCcceeeecceEEEEEeCCCceE
Confidence 444433 4678999999999995 55888888889999999999999986
No 8
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=62.40 E-value=5 Score=39.31 Aligned_cols=46 Identities=13% Similarity=0.338 Sum_probs=34.0
Q ss_pred eecCCceEEEecCCCCCCCChhhhhceEEEEeeeChhhHHHHHHHHH
Q psy17844 13 EYNPQFRLYLTTKLRNPHYLPEVFNKVTVVNFALTVFGLEDQLLGIV 59 (127)
Q Consensus 13 ~~~~~Frl~l~t~~~~p~~~~~~~~~~tvinFtvt~~gLe~qlL~~v 59 (127)
..||+|||||+|..++|.||..+.-+...+-+- -|.||..-|+...
T Consensus 2469 ~~h~~FRLwlts~~~~~~fP~~iLq~s~K~t~E-pP~Glkanl~r~~ 2514 (2695)
T 4akg_A 2469 EEHEKFKMFMTCHLTGDKLPAPLLQRTDRFVYE-DIPGILDTVKDLW 2514 (2695)
T ss_dssp TTSCSCCEEEECCSSSCCCCHHHHHHSEEEEEC-CCCCHHHHHHHHH
T ss_pred CCCCCceEEEeccCCcCcCCHHHHhccceeeec-CChhHHHHHHHHh
Confidence 369999999999778899998886555544333 4667777777654
No 9
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=59.52 E-value=24 Score=21.03 Aligned_cols=40 Identities=18% Similarity=0.325 Sum_probs=33.6
Q ss_pred HHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17844 59 VVAKERPDLQTKRDELIVQGASNKKALKEVEDMILHTLSS 98 (127)
Q Consensus 59 vv~~e~p~Le~~r~~L~~~~~~~~~~L~~lE~~lL~~Ls~ 98 (127)
.+..+-.+|......-...+++++.++.+|--++|..|..
T Consensus 14 ~i~~el~eLq~~~~~~~aki~e~krkl~eLsHRiLkvlv~ 53 (65)
T 3t97_B 14 IISEDISELQKNQTTTMAKIAQYKRKLMDLSHRTLQVLIK 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4556667778888888899999999999999999998854
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=44.49 E-value=7.8 Score=38.68 Aligned_cols=45 Identities=22% Similarity=0.431 Sum_probs=31.8
Q ss_pred eecCCceEEEecCCCCCCCChhhhhceEEEEeeeChhhHHHHHHHHH
Q psy17844 13 EYNPQFRLYLTTKLRNPHYLPEVFNKVTVVNFALTVFGLEDQLLGIV 59 (127)
Q Consensus 13 ~~~~~Frl~l~t~~~~p~~~~~~~~~~tvinFtvt~~gLe~qlL~~v 59 (127)
..||+|||||+| .++|.||..+.-+...+-+- .|.||..-|+...
T Consensus 2723 ~~h~~FRLwLTs-ep~~~fP~~iLq~siKit~E-pP~GlkaNl~rs~ 2767 (3245)
T 3vkg_A 2723 SPHPSFRLFMTS-EIHPALPANLLRMSNVFSYE-NPPGVKANLLHTF 2767 (3245)
T ss_dssp CCCTTCEEECCE-ESCTTSCHHHHHTSEECCBC-CCSSHHHHHHHHH
T ss_pred CCCCCeeEEEEe-cCCCCCCHHHHHhhhHheeC-CChhHHHHHHHHH
Confidence 359999999988 47889998886555433332 4667777776654
No 11
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=43.59 E-value=39 Score=18.31 Aligned_cols=25 Identities=12% Similarity=0.316 Sum_probs=19.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17844 66 DLQTKRDELIVQGASNKKALKEVED 90 (127)
Q Consensus 66 ~Le~~r~~L~~~~~~~~~~L~~lE~ 90 (127)
+||.+..++-...++...++..|+.
T Consensus 7 eLE~r~k~le~~naeLEervstLq~ 31 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQN 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888888877754
No 12
>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia coli} SCOP: d.212.1.2 PDB: 2gsk_B* 1ihr_A 1qxx_A
Probab=41.70 E-value=19 Score=21.84 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=17.9
Q ss_pred CCCCCChhhhhc----eEEEEeeeChhh
Q psy17844 27 RNPHYLPEVFNK----VTVVNFALTVFG 50 (127)
Q Consensus 27 ~~p~~~~~~~~~----~tvinFtvt~~g 50 (127)
.+|.||+....+ ..+|.|.|+.+|
T Consensus 10 ~~~~YP~~a~~~~~~G~V~v~~~i~~~G 37 (90)
T 1u07_A 10 NQPQYPARAQALRIEGQVKVKFDVTPDG 37 (90)
T ss_dssp CCCCCCHHHHHHTCCEEEEEEEEECTTS
T ss_pred CCCCCcHHHHHCCCceEEEEEEEECCCC
Confidence 578999865432 567899998877
No 13
>3muu_A Structural polyprotein; beta barrels, IG-like folds, viral protein; HET: NAG BMA MAN; 3.29A {Sindbis virus} PDB: 3muw_A 3muw_U 1z8y_A 1z8y_B
Probab=41.37 E-value=4.3 Score=34.66 Aligned_cols=48 Identities=29% Similarity=0.315 Sum_probs=38.9
Q ss_pred EEeCCe--eeeecCCceEEEecCC--CCCCCChhhhhceEEEEeeeChhhHH
Q psy17844 5 IALGEN--VIEYNPQFRLYLTTKL--RNPHYLPEVFNKVTVVNFALTVFGLE 52 (127)
Q Consensus 5 i~igd~--~i~~~~~Frl~l~t~~--~~p~~~~~~~~~~tvinFtvt~~gLe 52 (127)
|..|-+ .+.+||+.--+|+|+. .+|++..|--+.-+..||+|+.+|+|
T Consensus 276 V~~g~r~vtL~Lhp~hPTLLTtR~LG~~p~~t~EWI~~~~~rnf~V~~eG~E 327 (750)
T 3muu_A 276 VIHGFKHISLQLDTDHLTLLTTRRLGANPEPTTEWIVGKTVRNFTVDRDGLE 327 (750)
T ss_dssp EEEETTEEEEEEEEEEEEEEEEEESSSCCCCCCEEEEEEECCCCBCCSSCEE
T ss_pred eEeccceEEEEecCCCCceEEEeccCCCCCCcceeeeccEEEEEEECCCceE
Confidence 444433 3567889999999994 66889889999999999999999986
No 14
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=34.19 E-value=58 Score=20.26 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=24.1
Q ss_pred HhhCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17844 61 AKERPDLQTKRDELIVQGASNKKALKEVEDMI 92 (127)
Q Consensus 61 ~~e~p~Le~~r~~L~~~~~~~~~~L~~lE~~l 92 (127)
..+.-.|..-|..+..++...+..+..+|+.|
T Consensus 36 qkekEqL~~LKkkl~~el~~h~~ei~~le~~i 67 (84)
T 1gmj_A 36 ARAKEQLAALKKHKENEISHHAKEIERLQKEI 67 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777777778888888888888876
No 15
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.96 E-value=28 Score=19.67 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=7.4
Q ss_pred hCccHHHHHHHHHHHHHHHH
Q psy17844 63 ERPDLQTKRDELIVQGASNK 82 (127)
Q Consensus 63 e~p~Le~~r~~L~~~~~~~~ 82 (127)
|+-+|..+-..|..+..+.+
T Consensus 27 E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 27 ELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 16
>2k9k_A TONB2; metal transport; NMR {Listonella anguillarum}
Probab=26.81 E-value=37 Score=21.08 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=18.1
Q ss_pred CCCCCCChhhhhc----eEEEEeeeChhh
Q psy17844 26 LRNPHYLPEVFNK----VTVVNFALTVFG 50 (127)
Q Consensus 26 ~~~p~~~~~~~~~----~tvinFtvt~~g 50 (127)
..+|.||+....+ ..+|.|+|+.+|
T Consensus 24 ~~~~~YP~~A~~~~~eG~V~v~f~I~~~G 52 (106)
T 2k9k_A 24 RVEPVYPSRALKRGVEGFVTLSFTIDTTG 52 (106)
T ss_dssp CSSCCCCSHHHHHCCCCEEEEEEEEETTT
T ss_pred cCCCCCCHHHHHcCCeeEEEEEEEECCCC
Confidence 4678899866432 567889988776
No 17
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=25.45 E-value=1.3e+02 Score=22.06 Aligned_cols=54 Identities=17% Similarity=0.229 Sum_probs=36.2
Q ss_pred ecCCceEEEecCCCCCCCChhhhhceEEEEeeeChhhHHHHHHHHHHHhhCccHH
Q psy17844 14 YNPQFRLYLTTKLRNPHYLPEVFNKVTVVNFALTVFGLEDQLLGIVVAKERPDLQ 68 (127)
Q Consensus 14 ~~~~Frl~l~t~~~~p~~~~~~~~~~tvinFtvt~~gLe~qlL~~vv~~e~p~Le 68 (127)
+.++.+++++|..+. ...|.+.+|+.++.|..-...--...|..+...+...+.
T Consensus 161 ~~~~~~~Il~t~~~~-~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (354)
T 1sxj_E 161 YSKNIRLIMVCDSMS-PIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE 214 (354)
T ss_dssp STTTEEEEEEESCSC-SSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC
T ss_pred hcCCCEEEEEeCCHH-HHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC
Confidence 345678888887554 577889999999999765444444555556666654443
No 18
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=25.35 E-value=1.6e+02 Score=21.28 Aligned_cols=52 Identities=10% Similarity=0.080 Sum_probs=33.7
Q ss_pred CCeeeeecCCceEEEecCCCCCCCChhhhhceEE-EEeeeC-hhhHHHHHHHHH
Q psy17844 8 GENVIEYNPQFRLYLTTKLRNPHYLPEVFNKVTV-VNFALT-VFGLEDQLLGIV 59 (127)
Q Consensus 8 gd~~i~~~~~Frl~l~t~~~~p~~~~~~~~~~tv-inFtvt-~~gLe~qlL~~v 59 (127)
.+....++.+|.++.+|......++|.+..|+.+ +.+..- .......++...
T Consensus 178 ~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~ 231 (350)
T 1g8p_A 178 DGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRR 231 (350)
T ss_dssp TTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHH
T ss_pred cceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHH
Confidence 3445667789999988864344789999999876 555543 233333555543
No 19
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=24.03 E-value=1.3e+02 Score=18.39 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=18.0
Q ss_pred hhCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17844 62 KERPDLQTKRDELIVQGASNKKALKEVEDMI 92 (127)
Q Consensus 62 ~e~p~Le~~r~~L~~~~~~~~~~L~~lE~~l 92 (127)
..+.+|+.+...+....+....++.+.|++.
T Consensus 35 ~~rkele~~~~~l~~ek~~L~~ql~eaEe~~ 65 (89)
T 3bas_A 35 RIKKELEEQNVTLLEQKNDLFGSMKQLEDKV 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3444556666666666666666666666554
No 20
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=23.46 E-value=1e+02 Score=25.76 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=28.1
Q ss_pred CCeeeeecCCceEEEecCCCC------------------------CCCChhhhhce-EEEEeeeChh
Q psy17844 8 GENVIEYNPQFRLYLTTKLRN------------------------PHYLPEVFNKV-TVVNFALTVF 49 (127)
Q Consensus 8 gd~~i~~~~~Frl~l~t~~~~------------------------p~~~~~~~~~~-tvinFtvt~~ 49 (127)
+++.+++ .++.++++|.... ..|+|++.+|+ .+|.|..=..
T Consensus 590 ~g~~~~~-~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~ 655 (758)
T 1r6b_X 590 NGRKADF-RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLST 655 (758)
T ss_dssp TTEEEEC-TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCH
T ss_pred CCCEEec-CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCH
Confidence 4667777 7788999886422 06889999998 5666654333
No 21
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=22.58 E-value=1e+02 Score=18.92 Aligned_cols=34 Identities=9% Similarity=0.150 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhcCC-CCCCCCHHHHHHHHhhhhh
Q psy17844 86 KEVEDMILHTLSSST-GNILEDPNAVDVLDSSKVH 119 (127)
Q Consensus 86 ~~lE~~lL~~Ls~~~-g~iLed~~Li~~L~~sK~~ 119 (127)
...|+.|+..-.+-. ..-++|+.|++.|+.....
T Consensus 37 ~~VE~~Li~lAq~Gqi~~ki~e~~L~~lL~~i~~~ 71 (80)
T 1eij_A 37 EQIELQLIQLAQMGRVRSKITDEQLKELLKRVAGK 71 (80)
T ss_dssp HHHHHHHHHHHHCCSSCCCCCHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHcCCCCCCcCHHHHHHHHHHHccc
Confidence 467777777666543 5678999999999886433
No 22
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=22.03 E-value=1.7e+02 Score=20.76 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=35.2
Q ss_pred ecCCceEEEecCCCCCCCChhhhhceEEEEeeeChhhHHHHHHHHHHHhhCccHH
Q psy17844 14 YNPQFRLYLTTKLRNPHYLPEVFNKVTVVNFALTVFGLEDQLLGIVVAKERPDLQ 68 (127)
Q Consensus 14 ~~~~Frl~l~t~~~~p~~~~~~~~~~tvinFtvt~~gLe~qlL~~vv~~e~p~Le 68 (127)
+.++.+++++|..+ +.+.|.+.+++.++.|..-...--.+.+...+..+...+.
T Consensus 129 ~~~~~~~i~~~~~~-~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~ 182 (319)
T 2chq_A 129 YSKSCRFILSCNYV-SRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKIT 182 (319)
T ss_dssp SSSSEEEEEEESCG-GGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBC
T ss_pred cCCCCeEEEEeCCh-hhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 34677888887543 3678889999999999765444444555555555544443
No 23
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.50 E-value=1.6e+02 Score=18.20 Aligned_cols=43 Identities=19% Similarity=0.343 Sum_probs=26.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CC--CCCCCCHH
Q psy17844 65 PDLQTKRDELIVQGASNKKALKEVEDMILHTLSS----ST--GNILEDPN 108 (127)
Q Consensus 65 p~Le~~r~~L~~~~~~~~~~L~~lE~~lL~~Ls~----~~--g~iLed~~ 108 (127)
-++..+...|......++.++..++..+ ..+.. |+ |.-++++.
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l-~~l~~~g~~CPvCgs~l~~~~ 61 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAI-EELKKAKGKCPVCGRELTDEH 61 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTCSEECTTTCCEECHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCCCCCCCCcCCHHH
Confidence 3445555666666777777777777654 55543 44 56666543
No 24
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=20.28 E-value=1.3e+02 Score=25.12 Aligned_cols=41 Identities=15% Similarity=0.361 Sum_probs=25.5
Q ss_pred eCCeeeeecCCceEEEecCCCCCC-----------CChhhhhce-EEEEeeeCh
Q psy17844 7 LGENVIEYNPQFRLYLTTKLRNPH-----------YLPEVFNKV-TVVNFALTV 48 (127)
Q Consensus 7 igd~~i~~~~~Frl~l~t~~~~p~-----------~~~~~~~~~-tvinFtvt~ 48 (127)
.+++.+++ .+++++++|..+... |+|++.+|+ .+|.|..=.
T Consensus 611 ~~g~~~~~-~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~ 663 (758)
T 3pxi_A 611 SKGRTVDF-RNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLE 663 (758)
T ss_dssp ----CCBC-TTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--C
T ss_pred CCCCEecc-CCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCC
Confidence 34444444 688999999754432 899999999 677766543
Done!