Query psy17844
Match_columns 127
No_of_seqs 102 out of 732
Neff 7.2
Searched_HMMs 13730
Date Sat Aug 17 00:28:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17844.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17844hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1njfa_ c.37.1.20 (A:) delta p 65.8 6.6 0.00048 26.3 5.7 63 13-77 141-204 (239)
2 d1sxje2 c.37.1.20 (E:4-255) Re 59.6 7.6 0.00056 25.6 5.1 52 14-67 158-210 (252)
3 d1ixsb2 c.37.1.20 (B:4-242) Ho 52.8 26 0.0019 22.8 11.2 104 12-116 130-235 (239)
4 d1a5ta2 c.37.1.20 (A:1-207) de 46.7 9 0.00066 25.2 3.6 36 15-51 136-172 (207)
5 d1in4a2 c.37.1.20 (A:17-254) H 34.1 54 0.0039 21.0 6.2 57 15-72 132-189 (238)
6 d1j75a_ a.4.5.19 (A:) Dlm-1 {M 33.5 8 0.00058 20.9 1.2 34 87-121 1-34 (57)
7 d1sxjb2 c.37.1.20 (B:7-230) Re 33.4 52 0.0038 21.0 5.9 73 17-90 131-205 (224)
8 d1tola2 d.212.1.1 (A:125-216) 31.4 16 0.0012 21.1 2.6 25 27-51 18-42 (92)
9 d1sxjc2 c.37.1.20 (C:12-238) R 29.9 29 0.0021 22.3 4.0 56 15-71 127-182 (227)
10 d1u07a_ d.212.1.2 (A:) TonB {E 29.3 19 0.0013 20.5 2.6 25 26-50 9-37 (90)
11 d2gnoa2 c.37.1.20 (A:11-208) g 29.1 15 0.0011 24.0 2.4 34 14-48 106-139 (198)
12 d1ivsa1 a.2.7.3 (A:797-862) Va 27.0 44 0.0032 17.8 4.5 27 66-92 1-27 (66)
No 1
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=65.84 E-value=6.6 Score=26.32 Aligned_cols=63 Identities=13% Similarity=0.177 Sum_probs=44.6
Q ss_pred eecCCceEEEecCCCCCCCChhhhhceEEEEee-eChhhHHHHHHHHHHHhhCccHHHHHHHHHHH
Q psy17844 13 EYNPQFRLYLTTKLRNPHYLPEVFNKVTVVNFA-LTVFGLEDQLLGIVVAKERPDLQTKRDELIVQ 77 (127)
Q Consensus 13 ~~~~~Frl~l~t~~~~p~~~~~~~~~~tvinFt-vt~~gLe~qlL~~vv~~e~p~Le~~r~~L~~~ 77 (127)
++.++.+++++|.. .+...|.+.+|+.++.|. ++.+.+.+ .+..+...|...+.++--+.+..
T Consensus 141 ~~~~~~~~il~tn~-~~~i~~~i~SRc~~i~~~~~~~~~i~~-~l~~i~~~e~~~~~~~~l~~i~~ 204 (239)
T d1njfa_ 141 EPPEHVKFLLATTD-PQKLPVTILSRCLQFHLKALDVEQIRH-QLEHILNEEHIAHEPRALQLLAR 204 (239)
T ss_dssp SCCTTEEEEEEESC-GGGSCHHHHTTSEEEECCCCCHHHHHH-HHHHHHHHHTCCBCHHHHHHHHH
T ss_pred cCCCCeEEEEEcCC-ccccChhHhhhhcccccccCcHHHhhh-HHHHHHhhhccCCCHHHHHHHHH
Confidence 35678889999864 456788899999999994 56666655 45567777777776655544444
No 2
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=59.64 E-value=7.6 Score=25.60 Aligned_cols=52 Identities=17% Similarity=0.278 Sum_probs=34.8
Q ss_pred ecCCceEEEecCCCCCCCChhhhhceEEEEeee-ChhhHHHHHHHHHHHhhCccH
Q psy17844 14 YNPQFRLYLTTKLRNPHYLPEVFNKVTVVNFAL-TVFGLEDQLLGIVVAKERPDL 67 (127)
Q Consensus 14 ~~~~Frl~l~t~~~~p~~~~~~~~~~tvinFtv-t~~gLe~qlL~~vv~~e~p~L 67 (127)
++++.+++++|.... ..+|.+.+|+..|+|.. +.+.+. +.|..++..|.-.+
T Consensus 158 ~~~~~~~Il~tn~~~-~i~~~l~sR~~~i~~~~~~~~~~~-~~l~~i~~~e~~~~ 210 (252)
T d1sxje2 158 YSKNIRLIMVCDSMS-PIIAPIKSQCLLIRCPAPSDSEIS-TILSDVVTNERIQL 210 (252)
T ss_dssp STTTEEEEEEESCSC-SSCHHHHTTSEEEECCCCCHHHHH-HHHHHHHHHHTCEE
T ss_pred ccccccceeeecccc-chhhhhhcchheeeecccchhhHH-HHHHHHHHHcCCCC
Confidence 456677888886554 46777899999999964 454444 44466666665433
No 3
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}
Probab=52.81 E-value=26 Score=22.76 Aligned_cols=104 Identities=11% Similarity=-0.058 Sum_probs=67.5
Q ss_pred eeecCCceEEEecCCCCCCCChhhhhceEEEEeeeChhhHHHHHHHHHHHhhCccHHHHHHHHHHHHHHH--HHHHHHHH
Q psy17844 12 IEYNPQFRLYLTTKLRNPHYLPEVFNKVTVVNFALTVFGLEDQLLGIVVAKERPDLQTKRDELIVQGASN--KKALKEVE 89 (127)
Q Consensus 12 i~~~~~Frl~l~t~~~~p~~~~~~~~~~tvinFtvt~~gLe~qlL~~vv~~e~p~Le~~r~~L~~~~~~~--~~~L~~lE 89 (127)
...+|+|.++..|..+.-..+|....++..+.|..-...-..+.+..++..+..++...-...+...+.. +.-+..++
T Consensus 130 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~l~~ia~~s~gd~R~a~~~l~ 209 (239)
T d1ixsb2 130 RLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFR 209 (239)
T ss_dssp EEECCCCEEEEEESCCSSCSCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGCCCBCHHHHHHHHHHTTSSHHHHHHHHH
T ss_pred ccCCCCEEEEeeccCcccccchhhcccceeeEeeccChhhhhHHHHHHHHHhCCccchHHHHHHHHHcCCCHHHHHHHHH
Confidence 4567889999888766656677788889999999888888888888899999888876655555444332 22222222
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHHhh
Q psy17844 90 DMILHTLSSSTGNILEDPNAVDVLDSS 116 (127)
Q Consensus 90 ~~lL~~Ls~~~g~iLed~~Li~~L~~s 116 (127)
.+-..........+..+.+.+.|...
T Consensus 210 -~~~~~a~~~~~~~It~~~~~~~l~~l 235 (239)
T d1ixsb2 210 -RVRDFAQVAGEEVITRERALEALAAL 235 (239)
T ss_dssp -HHHHHHTTSCCSCBCHHHHHHHHHHH
T ss_pred -HHHHHHHHhCCCCcCHHHHHHHHhhh
Confidence 22121222333556667777777543
No 4
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=46.68 E-value=9 Score=25.24 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=25.7
Q ss_pred cCCceEEEecCCCCCCCChhhhhceEEEEee-eChhhH
Q psy17844 15 NPQFRLYLTTKLRNPHYLPEVFNKVTVVNFA-LTVFGL 51 (127)
Q Consensus 15 ~~~Frl~l~t~~~~p~~~~~~~~~~tvinFt-vt~~gL 51 (127)
.++-+++++|...+ ...|.+.+|+.+++|. ++.+.+
T Consensus 136 ~~~~~fIl~t~~~~-~ll~tI~SRc~~i~~~~~~~~~~ 172 (207)
T d1a5ta2 136 PAETWFFLATREPE-RLLATLRSRCRLHYLAPPPEQYA 172 (207)
T ss_dssp CTTEEEEEEESCGG-GSCHHHHTTSEEEECCCCCHHHH
T ss_pred cccceeeeeecChh-hhhhhhcceeEEEecCCCCHHHH
Confidence 45566677786544 5888899999999997 454433
No 5
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}
Probab=34.14 E-value=54 Score=20.99 Aligned_cols=57 Identities=5% Similarity=0.042 Sum_probs=38.4
Q ss_pred cCCceEEEecCCCCCCCChhhhhceE-EEEeeeChhhHHHHHHHHHHHhhCccHHHHHH
Q psy17844 15 NPQFRLYLTTKLRNPHYLPEVFNKVT-VVNFALTVFGLEDQLLGIVVAKERPDLQTKRD 72 (127)
Q Consensus 15 ~~~Frl~l~t~~~~p~~~~~~~~~~t-vinFtvt~~gLe~qlL~~vv~~e~p~Le~~r~ 72 (127)
.++|.+++.|..+. ..++.+.+++. ++.|..-...-...++..+...+..++...--
T Consensus 132 ~~~~~~I~at~~~~-~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 189 (238)
T d1in4a2 132 IQPFTLVGATTRSG-LLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAA 189 (238)
T ss_dssp -CCCEEEEEESCGG-GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred CCCeEEEEecCCCc-cccccceeeeeEEEEecCCCHHHHHHHHHHhhhhccchhhHHHH
Confidence 45788888876443 45555566654 56788777777777778888888877766533
No 6
>d1j75a_ a.4.5.19 (A:) Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.45 E-value=8 Score=20.90 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHhhhhhHH
Q psy17844 87 EVEDMILHTLSSSTGNILEDPNAVDVLDSSKVHDS 121 (127)
Q Consensus 87 ~lE~~lL~~Ls~~~g~iLed~~Li~~L~~sK~~s~ 121 (127)
+||.+||+.|+++.+.+ --..|++..+.-|++-+
T Consensus 1 ~LEQkILQVL~dagspv-k~~ql~k~cqVpkk~lN 34 (57)
T d1j75a_ 1 NLEQKILQVLSDDGGPV-KIGQLVKKCQVPKKTLN 34 (57)
T ss_dssp CHHHHHHHHHHHHCSCE-EHHHHHHHHCSCHHHHH
T ss_pred CHHHHHHHHHHhcCCch-HHHHHHHHHCCCHHHHH
Confidence 37899999999866543 33445555554444433
No 7
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=33.36 E-value=52 Score=20.98 Aligned_cols=73 Identities=8% Similarity=0.098 Sum_probs=46.1
Q ss_pred CceEEEecCCCCCCCChhhhhceEEEEeeeChhhHHHHHHHHHHHhhCccHHHHHHHHHHHH--HHHHHHHHHHHH
Q psy17844 17 QFRLYLTTKLRNPHYLPEVFNKVTVVNFALTVFGLEDQLLGIVVAKERPDLQTKRDELIVQG--ASNKKALKEVED 90 (127)
Q Consensus 17 ~Frl~l~t~~~~p~~~~~~~~~~tvinFtvt~~gLe~qlL~~vv~~e~p~Le~~r~~L~~~~--~~~~~~L~~lE~ 90 (127)
+.+++++|. ......+.+.+++.++.|..-...--...|..++..|.-.+..+--+.+... ...+.-+..||.
T Consensus 131 ~~~~i~~~~-~~~~i~~~l~sr~~~i~~~~~~~~~i~~~l~~i~~~e~~~i~~~~l~~I~~~s~Gd~R~ai~~Lq~ 205 (224)
T d1sxjb2 131 STRFAFACN-QSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQS 205 (224)
T ss_dssp TEEEEEEES-CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ceeeeeccC-chhhhhhHHHHHHHHhhhcccchhhhHHHHHHHHHhcccCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 344555554 3445778899999999998766655556667778888877766544444333 234455555543
No 8
>d1tola2 d.212.1.1 (A:125-216) TolA {Escherichia coli [TaxId: 562]}
Probab=31.44 E-value=16 Score=21.14 Aligned_cols=25 Identities=12% Similarity=0.020 Sum_probs=20.3
Q ss_pred CCCCCChhhhhceEEEEeeeChhhH
Q psy17844 27 RNPHYLPEVFNKVTVVNFALTVFGL 51 (127)
Q Consensus 27 ~~p~~~~~~~~~~tvinFtvt~~gL 51 (127)
.+.++++....+.+.|.|++.++|-
T Consensus 18 ~~w~~p~~~~g~~~~v~i~l~~~G~ 42 (92)
T d1tola2 18 SKFYDASSYAGKTCTLRIKLAPDGM 42 (92)
T ss_dssp TTCTTGGGGTTCCEEEEEEECTTSC
T ss_pred HhcCCCcccCCCEEEEEEEEeCCcc
Confidence 3556778777888999999999886
No 9
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.94 E-value=29 Score=22.25 Aligned_cols=56 Identities=13% Similarity=0.182 Sum_probs=38.1
Q ss_pred cCCceEEEecCCCCCCCChhhhhceEEEEeeeChhhHHHHHHHHHHHhhCccHHHHH
Q psy17844 15 NPQFRLYLTTKLRNPHYLPEVFNKVTVVNFALTVFGLEDQLLGIVVAKERPDLQTKR 71 (127)
Q Consensus 15 ~~~Frl~l~t~~~~p~~~~~~~~~~tvinFtvt~~gLe~qlL~~vv~~e~p~Le~~r 71 (127)
.++.+++++|..+ ...+|.+.+++.+++|..-...--...|..++..|.=.+..+-
T Consensus 127 ~~~~~~~~~~~~~-~~i~~~i~sr~~~i~~~~~~~~~i~~~l~~I~~~e~i~i~~~~ 182 (227)
T d1sxjc2 127 TKNTRFCVLANYA-HKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNA 182 (227)
T ss_dssp TTTEEEEEEESCG-GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHH
T ss_pred ccceeeccccCcH-HHhHHHHHHHHhhhccccccccccccccccccccccccCCHHH
Confidence 3455666666543 4677889999999999865554445666677777776665443
No 10
>d1u07a_ d.212.1.2 (A:) TonB {Escherichia coli [TaxId: 562]}
Probab=29.29 E-value=19 Score=20.50 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=18.3
Q ss_pred CCCCCCChhhhhc----eEEEEeeeChhh
Q psy17844 26 LRNPHYLPEVFNK----VTVVNFALTVFG 50 (127)
Q Consensus 26 ~~~p~~~~~~~~~----~tvinFtvt~~g 50 (127)
...|.||.....+ ..++.|+|+.+|
T Consensus 9 ~~~P~YP~~A~~~g~eG~V~v~f~I~~~G 37 (90)
T d1u07a_ 9 RNQPQYPARAQALRIEGQVKVKFDVTPDG 37 (90)
T ss_dssp CCCCCCCHHHHHHTCCEEEEEEEEECTTS
T ss_pred CCCCCCCHHHHHCCCeEEEEEEEEEeCCC
Confidence 3578899776543 677889988776
No 11
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}
Probab=29.08 E-value=15 Score=24.04 Aligned_cols=34 Identities=18% Similarity=0.114 Sum_probs=25.0
Q ss_pred ecCCceEEEecCCCCCCCChhhhhceEEEEeeeCh
Q psy17844 14 YNPQFRLYLTTKLRNPHYLPEVFNKVTVVNFALTV 48 (127)
Q Consensus 14 ~~~~Frl~l~t~~~~p~~~~~~~~~~tvinFtvt~ 48 (127)
.+++=+++++|..++ ...|-+.|||.+++|....
T Consensus 106 Pp~~t~fiLit~~~~-~ll~TI~SRC~~i~~~~p~ 139 (198)
T d2gnoa2 106 PPEYAVIVLNTRRWH-YLLPTIKSRVFRVVVNVPK 139 (198)
T ss_dssp CCTTEEEEEEESCGG-GSCHHHHTTSEEEECCCCH
T ss_pred CCCCceeeeccCChh-hCHHHHhcceEEEeCCCch
Confidence 445556667776554 6889999999999997543
No 12
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=26.96 E-value=44 Score=17.76 Aligned_cols=27 Identities=7% Similarity=-0.049 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17844 66 DLQTKRDELIVQGASNKKALKEVEDMI 92 (127)
Q Consensus 66 ~Le~~r~~L~~~~~~~~~~L~~lE~~l 92 (127)
|++.++..|.+........+..++.+|
T Consensus 1 D~~~E~~RL~K~l~kl~~~i~~~~~kL 27 (66)
T d1ivsa1 1 DVEEWRRRQEKRLKELLALAERSQRKL 27 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888765
Done!