RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17844
(127 letters)
>gnl|CDD|193257 pfam12781, AAA_9, ATP-binding dynein motor region D5. The 380 kDa
motor unit of dynein belongs to the AAA class of
chaperone-like ATPases. The core of the 380 kDa motor
unit contains a concatenated chain of six AAA modules,
of which four correspond to the ATP binding sites with
P-loop signatures described previously, and two are
modules in which the P loop has been lost in evolution.
This particular family is the D5 ATP-binding region of
the motor, but has lost its P-loop.
Length = 228
Score = 110 bits (277), Expect = 2e-31
Identities = 60/120 (50%), Positives = 82/120 (68%)
Query: 4 YIALGENVIEYNPQFRLYLTTKLRNPHYLPEVFNKVTVVNFALTVFGLEDQLLGIVVAKE 63
YI +G+ +EYNP+FRL L TKL NPHY PE+ + T++NF +T GLEDQLL VVAKE
Sbjct: 108 YIKIGDKEVEYNPKFRLILHTKLANPHYKPEMQAQCTLINFTVTRDGLEDQLLAAVVAKE 167
Query: 64 RPDLQTKRDELIVQGASNKKALKEVEDMILHTLSSSTGNILEDPNAVDVLDSSKVHDSKI 123
RPDL+ + +L Q K LKE+ED +L LSS++GN L D V+ L+++K ++I
Sbjct: 168 RPDLEQLKSDLTKQQNEFKIVLKELEDSLLSRLSSASGNFLGDTALVENLETTKHTAAEI 227
>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton].
Length = 3164
Score = 46.9 bits (111), Expect = 4e-07
Identities = 15/80 (18%), Positives = 26/80 (32%)
Query: 38 KVTVVNFALTVFGLEDQLLGIVVAKERPDLQTKRDELIVQGASNKKALKEVEDMILHTLS 97
++ V F V G E ++ + L L A L + +L L
Sbjct: 2591 QLIQVMFVSKVLGCETEIPDALEKLVSGPLFVHEKALNALKACGSLFLWVLARYLLAKLM 2650
Query: 98 SSTGNILEDPNAVDVLDSSK 117
S N+ + +L + K
Sbjct: 2651 LSISNMEQTDEIAVLLHNLK 2670
>gnl|CDD|223732 COG0659, SUL1, Sulfate permease and related transporters (MFS
superfamily) [Inorganic ion transport and metabolism].
Length = 554
Score = 28.8 bits (65), Expect = 0.77
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 44 FALTVFGLEDQLLGIVVAKERPDLQTKRD-ELIVQGASN 81
AL + GL + LL V + + ELI QG +N
Sbjct: 255 LALALLGLLESLLTAVSFDGMTGTKHDSNRELIAQGIAN 293
>gnl|CDD|177791 PLN00200, PLN00200, argininosuccinate synthase; Provisional.
Length = 404
Score = 28.2 bits (63), Expect = 1.3
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 42 VNFALTVFGLEDQLLGIVVAKERPDLQTKRDELI-------VQGASNKKALKEVEDMILH 94
V F LT F L +L VVA R R++LI + KK++ + + H
Sbjct: 129 VRFELTFFALNPELK--VVAPWREWDIKGREDLIEYAKKHNIPVPVTKKSIYSRDRNLWH 186
Query: 95 TLSSSTGNILEDP 107
S G+ILEDP
Sbjct: 187 I--SYEGDILEDP 197
>gnl|CDD|111810 pfam02962, CHMI, 5-carboxymethyl-2-hydroxymuconate isomerase.
Length = 124
Score = 27.2 bits (60), Expect = 2.0
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 16 PQFRLYLTTKLRNPHYLPEVFNKVTVVNFALTVF 49
P F L T +R P LPE+F KV V A +F
Sbjct: 1 PHFTLECTDNIREPADLPELFQKVNGVLAARGIF 34
>gnl|CDD|144851 pfam01410, COLFI, Fibrillar collagen C-terminal domain. Found at
C-termini of fibrillar collagens: Ephydatia muelleri
procollagen EMF1 alpha, vertebrate collagens
alpha(1)III, alpha(1)II, alpha(2)V etc.
Length = 208
Score = 26.8 bits (60), Expect = 2.6
Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 17/53 (32%)
Query: 8 GENVIEYNPQFRLYLTTKLRNPHYLPEVFNKVTVVNFALTVFGLEDQLLGIVV 60
G+ VIEY T K LP +V+ A + G DQ G V
Sbjct: 168 GKTVIEYR-------TQK---TSRLP-------IVDIAPSDIGGPDQEFGFEV 203
>gnl|CDD|176569 cd08632, PI-PLCc_eta1, Catalytic domain of metazoan
phosphoinositide-specific phospholipase C-eta1. This
subfamily corresponds to the catalytic domain present in
metazoan phosphoinositide-specific phospholipase C
(PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a
signaling enzyme that hydrolyzes the membrane
phospholipids phosphatidylinositol-4,5-bisphosphate
(PIP2) to generate two important second messengers in
eukaryotic signal transduction cascades, Inositol
1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG).
InsP3 triggers inflow of calcium from intracellular
stores, while DAG, together with calcium, activates
protein kinase C, which then phosphorylates other
molecules, leading to altered cellular activity. Calcium
is required for the catalysis. PI-PLC-eta represents a
class of neuron-speific PI-PLC that has an N-terminal
pleckstrin homology (PH) domain, an array of EF hands, a
PLC catalytic core domain, a C2 domain, and a unique
C-terminal tail that terminates with a PDZ-binding
motif, a potential interaction site for other signaling
proteins. The PLC catalytic core domain is a TIM barrel
with two highly conserved regions (X and Y) split by a
highly degenerate linker sequence. PI-PLC-eta1 is a
neuron-specific enzyme and expressed in only nerve
tissues such as the brain and spinal cord. It may
perform a fundamental role in the brain.
Length = 253
Score = 26.9 bits (59), Expect = 2.8
Identities = 15/56 (26%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 62 KERPDLQTKRDELIVQGASNKKALKEVEDMILHTLSSSTGNILEDPNAVDVLDSSK 117
K+ P Q + +++V+G KK +++ D++++T S + +I++D + +VL S+
Sbjct: 130 KQLPSPQLLKGKILVKG---KKLCRDLSDLVVYTNSVAAQDIVDDGSTGNVLSFSE 182
>gnl|CDD|235659 PRK05974, PRK05974, phosphoribosylformylglycinamidine synthase
subunit PurS; Reviewed.
Length = 80
Score = 25.5 bits (57), Expect = 3.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 68 QTKRDELIVQGASNKKALKEVEDM 91
Q K EL ++G S +KA ++++M
Sbjct: 38 QGKYFELELEGESEEKAEADLKEM 61
>gnl|CDD|237952 PRK15362, PRK15362, pathogenicity island 2 effector protein SseC;
Provisional.
Length = 473
Score = 26.7 bits (59), Expect = 3.9
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 18/80 (22%)
Query: 59 VVAKERPDLQTKRDELIVQG-----------ASNKKALKEVEDMILHTLSSSTGNILEDP 107
++ E+ LQ K ++LI+Q K K +E++ +G L D
Sbjct: 400 MINTEKAKLQKKIEQLILQQRFLDFIMEQYEKQKKIEQKRLEELY-----KGSGAALRD- 453
Query: 108 NAVDVLDSSKVHDSKIGGFI 127
A+D +D ++I G
Sbjct: 454 -ALDAIDQYGSVQARIAGSR 472
>gnl|CDD|223534 COG0458, CarB, Carbamoylphosphate synthase large subunit (split
gene in MJ) [Amino acid transport and metabolism /
Nucleotide transport and metabolism].
Length = 400
Score = 26.5 bits (59), Expect = 4.3
Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 18/71 (25%)
Query: 11 VIEYNPQF--------------RLYLTTKLRNPHYLPEVFNKVTVVNFALTVFGLEDQLL 56
VIE NP+ + KL + L E+ N +T A L+
Sbjct: 283 VIEINPRVSRSSALASKATGYPIAKVAAKLAVGYTLDEIRNDITGRTPASFEPSLDY--- 339
Query: 57 GIVVAKERPDL 67
+V R D
Sbjct: 340 -VVTKIPRFDF 349
>gnl|CDD|153247 cd07985, LPLAT_GPAT, Lysophospholipid Acyltransferases (LPLATs)
of Glycerophospholipid Biosynthesis: GPAT.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: glycerol-3-phosphate 1-acyltransferase (GPAT,
PlsB). LPLATs are acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins
(acylACPs) into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
This subgroup includes glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB).
Length = 235
Score = 25.5 bits (56), Expect = 10.0
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 12/48 (25%)
Query: 2 QEYIALGENVI-------EYNPQFRLYLTTKLRNPHYLPEVFNKVTVV 42
+E +A G NV+ E +P L K P + + V
Sbjct: 15 EEQLAQGHNVVLLANHQTEADPAVISLLLEKTH-----PYLAENMIYV 57
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.136 0.374
Gapped
Lambda K H
0.267 0.0764 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,475,650
Number of extensions: 577895
Number of successful extensions: 477
Number of sequences better than 10.0: 1
Number of HSP's gapped: 477
Number of HSP's successfully gapped: 25
Length of query: 127
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 42
Effective length of database: 7,167,512
Effective search space: 301035504
Effective search space used: 301035504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)