RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17844
(127 letters)
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 186 bits (473), Expect = 3e-56
Identities = 37/118 (31%), Positives = 68/118 (57%)
Query: 1 NQEYIALGENVIEYNPQFRLYLTTKLRNPHYLPEVFNKVTVVNFALTVFGLEDQLLGIVV 60
+ I LG+ ++++P F ++L T+ H+ P++ ++VT VNF +T L+ Q L +
Sbjct: 2258 GRILIRLGDQDVDFSPSFMIFLFTRDPTAHFTPDLCSRVTFVNFTVTPSSLQSQCLHEAL 2317
Query: 61 AKERPDLQTKRDELIVQGASNKKALKEVEDMILHTLSSSTGNILEDPNAVDVLDSSKV 118
ERPD KR +L+ + L+ +E +L+ LS ++GNIL+D + + L++ K
Sbjct: 2318 KTERPDTHKKRSDLLKIQGEFQVKLRILEKSLLNALSQASGNILDDDSVISTLETLKK 2375
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 183 bits (467), Expect = 2e-55
Identities = 28/118 (23%), Positives = 64/118 (54%)
Query: 1 NQEYIALGENVIEYNPQFRLYLTTKLRNPHYLPEVFNKVTVVNFALTVFGLEDQLLGIVV 60
N+ + +G++ ++ + F+L++ + + + ++V +V+F +E ++ I +
Sbjct: 2078 NRVTVEIGDHEVDVSGDFKLFIHSCDPSGDIPIFLRSRVRLVHFVTNKESIETRIFDITL 2137
Query: 61 AKERPDLQTKRDELIVQGASNKKALKEVEDMILHTLSSSTGNILEDPNAVDVLDSSKV 118
+E ++Q KR++LI K LK +E +L L++S GN+LE+ + L++ K
Sbjct: 2138 TEENAEMQRKREDLIKLNTEYKLKLKNLEKRLLEELNNSQGNMLENDELMVTLNNLKK 2195
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 5e-04
Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 48/119 (40%)
Query: 45 ALT----VFGLED--QLL---GIVVAKERPDLQTKRDELIVQGASNKKAL---------- 85
AL V +E +++ G+ + P RDEL G SN +
Sbjct: 1769 ALASLADVMSIESLVEVVFYRGMTMQVAVP-----RDEL---GRSNYGMIAINPGRVAAS 1820
Query: 86 --KEVEDMILHTLSSSTGNILE---------------DPNAVD----VLDSSKVHDSKI 123
+E ++ + TG ++E D A+D VL+ K+ I
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDI 1879
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 27.7 bits (61), Expect = 0.89
Identities = 2/13 (15%), Positives = 8/13 (61%)
Query: 7 LGENVIEYNPQFR 19
L + +++ ++R
Sbjct: 52 LSDKLVDTRSEWR 64
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 2.6
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 86 KEVEDMILHTLSSS-TGNILEDPNAVDVLD 114
K+V+DM LS +I+ +AV
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D-
structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB:
1i6v_D* 2gho_D
Length = 1265
Score = 26.1 bits (58), Expect = 4.4
Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 8/43 (18%)
Query: 58 IVVAKERPDLQTKRDELI--------VQGASNKKALKEVEDMI 92
I++ E+ LQ D +I V +++ L+ + D++
Sbjct: 305 IIIRNEKRMLQEAVDAVIDNGRRGSPVTNPGSERPLRSLTDIL 347
>2ii1_A Acetamidase; 10172637, structural genomics, joint center for
structural genomics, PSI-2, protein structure
initiative, J hydrolase; 1.95A {Bacillus halodurans}
Length = 301
Score = 25.8 bits (56), Expect = 4.6
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 89 EDMILHTLSSSTGNILEDPNAVDVLDSSKVH 119
+ +I T + I + A+ +D ++V+
Sbjct: 28 DTVIFETKDCFSDQITNEEQALTSIDFNRVN 58
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial
fission, GT stalk, PH, BSE, membrane fission; HET: 1PE;
3.10A {Rattus norvegicus} PDB: 3snh_A
Length = 772
Score = 25.6 bits (55), Expect = 5.4
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 50 GLEDQLLGIVVAKERPDLQTKRDELIVQGASNKKALKEVEDMILHTLSS 98
G ++ L+ +E + +RDE++ + K+AL + D+ T+S+
Sbjct: 729 GDQNTLM-----EESAEQAQRRDEMLRMYHALKEALSIIGDINTTTVST 772
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 24.9 bits (53), Expect = 8.2
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 12/33 (36%)
Query: 82 KKALKEVEDMI-LHTLSSSTGNILEDP----NA 109
K+ALK+++ + L+ S+ P A
Sbjct: 19 KQALKKLQASLKLYADDSA-------PALAIKA 44
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.136 0.374
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,918,870
Number of extensions: 106280
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 10
Length of query: 127
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 44
Effective length of database: 4,384,350
Effective search space: 192911400
Effective search space used: 192911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)