RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17844
         (127 letters)



>d2o8sa1 a.295.1.1 (A:54-278) Uncharacterized protein AGR_C_984p
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 225

 Score = 23.6 bits (51), Expect = 8.7
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 21 YLTTKLRNPHYLPEVFNKVTVVNFALTVFGLEDQ 54
          Y   K+ +   + +      + N+AL   GLED 
Sbjct: 34 YYREKIGSVKSIDDFMADTRLYNYALKAHGLEDM 67


>d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP),
          C-terminal domain {Archaeon Sulfolobus acidocaldarius
          [TaxId: 2285]}
          Length = 101

 Score = 23.2 bits (50), Expect = 9.0
 Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 2/44 (4%)

Query: 1  NQEYIALGENVIEYNPQFRLYLTTKLRNPHYLPEVFN--KVTVV 42
          N +  A       Y P+    L  ++  P  +  +F+  K+ + 
Sbjct: 24 NLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVIT 67


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.136    0.374 

Gapped
Lambda     K      H
   0.267   0.0647    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 452,891
Number of extensions: 18925
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 5
Length of query: 127
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,377,846
Effective search space: 71647992
Effective search space used: 71647992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.4 bits)