RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy17845
         (81 letters)



>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel
           transmembrane region.  This family includes the four
           transmembrane helices that form the ion channel.
          Length = 228

 Score = 46.9 bits (112), Expect = 7e-08
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 11  DTNHIVEDWKYVSMVLDRFFLCVFTAACVLGTCGI 45
           + + + EDWKYV+MV+DR    +F  A VLGT   
Sbjct: 193 EFDEVKEDWKYVAMVIDRLSRWIFPIAFVLGTLVY 227


>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase
           inhibitor.
          Length = 596

 Score = 27.1 bits (60), Expect = 0.93
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 45  IIFQAPSLYDNTAPIDIQMTRITQYGISSPPTV 77
           +I+    +YD T  +D +M  +T YG  S  T+
Sbjct: 316 VIYVKQGIYDETVTVDKKMVNVTMYGDGSQKTI 348


>gnl|CDD|177976 PLN02342, PLN02342, ornithine carbamoyltransferase.
          Length = 348

 Score = 25.5 bits (56), Expect = 3.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 3   GRQVVTHPDTNHIVEDWKYVSMVLDRFFLCV 33
           G +VV   D N+IV  W  ++ VL   F+C 
Sbjct: 194 GTKVVYVGDGNNIVHSWLLLAAVLPFHFVCA 224


>gnl|CDD|146969 pfam04584, Pox_A28, Poxvirus A28 family.  Family of conserved
          Poxvirus A28 family proteins. Conserved region spans
          entire protein in the majority of family members.
          Length = 140

 Score = 25.0 bits (55), Expect = 3.9
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 4/27 (14%)

Query: 29 FFLCVFTAACVLGTCGIIFQAPSLYDN 55
          FF+ + TAA     C I+FQ   +Y+N
Sbjct: 7  FFIILATAA----VCFILFQLYYIYEN 29


>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein.  The
           Ligand-gated Ion Channel (LIC) Family of
           Neurotransmitter Receptors TC 1.A.9)Members of the LIC
           family of ionotropic neurotransmitter receptors are
           found only in vertebrate and invertebrate animals. They
           exhibit receptor specificity for (1)acetylcholine, (2)
           serotonin, (3) glycine, (4) glutamate and (5)
           g-aminobutyric acid (GABA). All of these receptor
           channels are probably hetero- orhomopentameric. The best
           characterized are the nicotinic acetyl-choline receptors
           which are pentameric channels of a2bgd subunit
           composition. All subunits arehomologous. The three
           dimensional structures of the protein complex in both
           the open and closed configurations have been solved at
           0.9 nm resolution.The channel protein complexes of the
           LIC family preferentially transport cations or anions
           depending on the channel (e.g., the acetylcholine
           receptors are cationselective while glycine receptors
           are anion selective) [Transport and binding proteins,
           Cations and iron carrying compounds].
          Length = 459

 Score = 25.1 bits (55), Expect = 4.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 15  IVEDWKYVSMVLDRFFLCVFTAACVLGTCGI 45
           +V DWK+ + V+D+     F  A +L   G 
Sbjct: 425 VVRDWKFRAKVIDKLSRMAFPLAFLLFNIGY 455


>gnl|CDD|173241 PRK14780, PRK14780, lipoprotein signal peptidase; Provisional.
          Length = 263

 Score = 24.9 bits (54), Expect = 5.8
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 13  NHIVEDWKYVSMVLDRFFLCVFTAACVLGTCGII 46
           N +V+ WK+V+ +++ F + +    CVL    II
Sbjct: 187 NGVVDYWKFVNSIINLFDVYIVVGVCVLVVILII 220


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.327    0.139    0.447 

Gapped
Lambda     K      H
   0.267   0.0709    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,092,793
Number of extensions: 303331
Number of successful extensions: 319
Number of sequences better than 10.0: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 6
Length of query: 81
Length of database: 10,937,602
Length adjustment: 50
Effective length of query: 31
Effective length of database: 8,719,902
Effective search space: 270316962
Effective search space used: 270316962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.2 bits)