RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17845
(81 letters)
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 69.1 bits (169), Expect = 7e-16
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 4 RQVVTHPDTNHIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNTAP 58
Q+ + + + + +DW+YV+MV DR FL +F C +GT I A P
Sbjct: 314 EQLESASEFDDLKKDWQYVAMVADRLFLYIFITMCSIGTFSIFLDASHNVPPDNP 368
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_E
Length = 488
Score = 62.1 bits (150), Expect = 3e-13
Identities = 10/51 (19%), Positives = 16/51 (31%)
Query: 9 HPDTNHIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNTAPI 59
D+ E+W + V+D+ + LGT I P
Sbjct: 429 QNDSGSENENWVLIGKVIDKACFWIALLLFSLGTLAIFLTGHLNQVPEFPF 479
>4aq5_C Acetylcholine receptor delta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_C
Length = 522
Score = 59.4 bits (143), Expect = 2e-12
Identities = 12/52 (23%), Positives = 18/52 (34%)
Query: 11 DTNHIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNTAPIDIQ 62
+ V +W V +DR + + T VLGT I P +
Sbjct: 459 AYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNFNRPPAKPFEGD 510
>4aq5_B Acetylcholine receptor beta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_B
Length = 493
Score = 59.4 bits (143), Expect = 2e-12
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 9 HPDTNHIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNTAP 58
+ + + +DW+YV+MV DR FL +F C +GT I A P
Sbjct: 442 ASEFDDLKKDWQYVAMVADRLFLYIFITMCSIGTFSIFLDASHNVPPDNP 491
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 59.1 bits (143), Expect = 3e-12
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 9 HPDTNHIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQA 49
++++ E+WKYV+MV+D LCVF C++GT +
Sbjct: 322 DEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAGR 362
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 53.4 bits (128), Expect = 3e-10
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 9 HPDTNHIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNTAP 58
D+ E+W + V+D+ + LGT I + N P
Sbjct: 323 QNDSGSENENWVLIGKVIDKACFWIALLLFSLGTLAIFLTG---HLNQVP 369
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_A
Length = 461
Score = 53.1 bits (127), Expect = 3e-10
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 9 HPDTNHIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQA 49
++++ E+WKYV+MV+D LCVF C++GT +
Sbjct: 413 DEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAGR 453
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 369
Score = 53.0 bits (127), Expect = 4e-10
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 4 RQVVTHPDTNHIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQA 49
+Q+ + V +W V +DR + + T VLGT I
Sbjct: 316 KQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMG 361
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Length = 250
Score = 51.1 bits (121), Expect = 2e-09
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 4 RQVVTHPDTNHIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAP 50
Q+ + + + + +DW+YV+MV DR FL VF C +GT I A
Sbjct: 197 EQLESASEFDDLKKDWQYVAMVADRLFLYVFFVICSIGTFSIFLDAS 243
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1
Length = 260
Score = 51.1 bits (121), Expect = 2e-09
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 9 HPDTNHIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAP 50
D+ E+W + V+D+ + +GT I
Sbjct: 212 QNDSGSENENWVLIGKVIDKACFWIALLLFSIGTLAIFLTGH 253
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A
2k59_B
Length = 227
Score = 48.2 bits (114), Expect = 1e-08
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 9 HPDTNHIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQA 49
++++ E+WKYV+MV+D LCVF C++GT +
Sbjct: 179 DEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAGR 219
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A
1eq8_A
Length = 260
Score = 48.0 bits (113), Expect = 2e-08
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 11 DTNHIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAP 50
+ V +W V +DR + + T VLGT I
Sbjct: 214 AYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMGN 253
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic
acetylcholine receptors, transmembrane domain, HFI
junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Length = 164
Score = 29.8 bits (67), Expect = 0.048
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 9 HPDTNHIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQ 48
P T+ YV+MV+DR FL +F CV GT G+ Q
Sbjct: 119 SPTTHTPRGGGGYVAMVIDRLFLWIFVFVCVFGTIGMFLQ 158
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor,
DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A
{Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB:
4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A*
1e60_A* 1e18_A* 1dms_A*
Length = 780
Score = 27.8 bits (62), Expect = 0.33
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 1 MNGRQVVTHPDTNHIVEDWKYVSM--VLDRFF 30
G H D N +++ W+ + V D +
Sbjct: 431 AGGNPFAHHQDRNRMLKAWEKLETFIVQDFQW 462
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural
genomics, PSI-2, protein structure initiative; HET: MSE;
1.90A {Silicibacter pomeroyi dss-3}
Length = 391
Score = 27.1 bits (61), Expect = 0.47
Identities = 6/24 (25%), Positives = 8/24 (33%), Gaps = 2/24 (8%)
Query: 57 APIDI--QMTRITQYGISSPPTVA 78
P D + RI Q P +
Sbjct: 244 VPEDQVRVVERIAQNMFICAPHAS 267
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase,
oxotransferase, molybdoenzyme, MO-cofactor, molybdenum;
HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2
c.81.1.1
Length = 829
Score = 27.1 bits (60), Expect = 0.57
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 1 MNGRQVVTHPDTNHIVEDWKYVSMVL 26
H D N + + + + V+
Sbjct: 471 SGNNPWNHHQDRNRMKQAFHKLECVV 496
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature
dependence O substrate recognition; HET: PLP; 1.80A
{Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A*
1dju_A*
Length = 389
Score = 26.7 bits (60), Expect = 0.71
Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 57 APIDI--QMTRITQYGISSPPTVA 78
AP I +M + Y + P T
Sbjct: 247 APSWIIERMVKFQMYNATCPVTFI 270
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent
aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus
aureus}
Length = 430
Score = 26.2 bits (58), Expect = 1.4
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 54 DNTAPIDIQMTRITQYGISSPPTVA 78
++ ++ + + ISS P
Sbjct: 291 TTKEVLEAKVKGLIRSNISSGPLPT 315
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase,
kynurenine aminotransferase, MJ0684, cytoplasm; HET:
LLP; 2.20A {Methanococcus jannaschii}
Length = 370
Score = 25.9 bits (58), Expect = 1.4
Identities = 5/24 (20%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 57 APIDI--QMTRITQYGISSPPTVA 78
+ +I + ++ Q S PT++
Sbjct: 236 SNDEIIEAILKLQQNLFISAPTIS 259
>3nra_A Aspartate aminotransferase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Length = 407
Score = 25.6 bits (57), Expect = 1.6
Identities = 2/24 (8%), Positives = 6/24 (25%), Gaps = 2/24 (8%)
Query: 57 APIDI--QMTRITQYGISSPPTVA 78
I +M ++ +
Sbjct: 267 GSRAIIARMEKLQAIVSLRAAGYS 290
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 25.6 bits (56), Expect = 2.2
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 18/74 (24%)
Query: 11 DTNHIVEDW----KYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNTAPIDIQMTRI 66
T V+D KY + +L+ GI P L++ P +M +
Sbjct: 880 KTKEPVDDKDVKAKYETSILEH--------------SGIRLIEPELFNGYNPEKKEMIQE 925
Query: 67 TQYGISSPPTVAPR 80
P A +
Sbjct: 926 VIVEEDLEPFEASK 939
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium
channel, sodium selective, gated ION channel; HET: BNG
PX4; 3.05A {Alpha proteobacterium HIMB114}
Length = 229
Score = 24.2 bits (53), Expect = 4.8
Identities = 4/30 (13%), Positives = 9/30 (30%)
Query: 11 DTNHIVEDWKYVSMVLDRFFLCVFTAACVL 40
T + + +LD F ++
Sbjct: 32 TTYELDPLFLETIHLLDYGITIFFVIEILI 61
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 24.2 bits (53), Expect = 6.0
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 8/37 (21%)
Query: 30 FLCVFTAACVLGTCGIIFQAPSLYDNTAPIDIQMTRI 66
C FT+A G C + +P+D+ TR
Sbjct: 202 LPCHFTSAFGAGFCTTVI--------ASPVDVVKTRY 230
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 24.0 bits (53), Expect = 6.5
Identities = 2/24 (8%), Positives = 5/24 (20%), Gaps = 2/24 (8%)
Query: 57 APIDI--QMTRITQYGISSPPTVA 78
A + + Y +
Sbjct: 236 ANHQVTDILRDYRDYTMICAGVFD 259
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated
sodium-selective ION C membrane, metal transport; HET:
PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A*
Length = 285
Score = 23.9 bits (52), Expect = 7.6
Identities = 3/28 (10%), Positives = 13/28 (46%)
Query: 13 NHIVEDWKYVSMVLDRFFLCVFTAACVL 40
++ + + + ++ + +FT +L
Sbjct: 53 KTFMQSFGVYTTLFNQIVITIFTIEIIL 80
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2;
protein-cofactor-inhibitor complex, V6-dependent enzyme,
LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP:
c.67.1.4 PDB: 1iax_A*
Length = 428
Score = 23.8 bits (52), Expect = 7.7
Identities = 3/17 (17%), Positives = 8/17 (47%)
Query: 62 QMTRITQYGISSPPTVA 78
+++ +G+ S T
Sbjct: 290 CARKMSSFGLVSTQTQY 306
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS
protein structure initiative, joint center for
structural G transferase; HET: PLP; 1.90A {Thermotoga
maritima} SCOP: c.67.1.1
Length = 389
Score = 23.6 bits (52), Expect = 9.6
Identities = 5/24 (20%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 57 APIDI--QMTRITQYGISSPPTVA 78
+ + +++I + S TVA
Sbjct: 260 SSEKVATAVSKIQSHTTSCINTVA 283
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.139 0.447
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,248,946
Number of extensions: 57954
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 27
Length of query: 81
Length of database: 6,701,793
Length adjustment: 50
Effective length of query: 31
Effective length of database: 5,305,743
Effective search space: 164478033
Effective search space used: 164478033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.4 bits)