RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17845
         (81 letters)



>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 250

 Score = 59.4 bits (143), Expect = 6e-13
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 11  DTNHIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLY 53
           + + + +DW+YV+MV DR FL VF   C +GT  I   A    
Sbjct: 204 EFDDLKKDWQYVAMVADRLFLYVFFVICSIGTFSIFLDASHNV 246


>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 260

 Score = 57.5 bits (138), Expect = 3e-12
 Identities = 11/39 (28%), Positives = 16/39 (41%)

Query: 11  DTNHIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQA 49
             +  V +W  V   +DR  + + T   VLGT  I    
Sbjct: 214 AYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMG 252


>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 260

 Score = 56.0 bits (134), Expect = 9e-12
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 11  DTNHIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNTAP 58
           D+    E+W  +  V+D+    +      +GT  I       + N  P
Sbjct: 214 DSGSENENWVLIGKVIDKACFWIALLLFSIGTLAIFLTG---HFNQVP 258


>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 227

 Score = 51.3 bits (122), Expect = 4e-10
 Identities = 15/40 (37%), Positives = 25/40 (62%)

Query: 9   HPDTNHIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQ 48
             ++++  E+WKYV+MV+D   LCVF   C++GT  +   
Sbjct: 179 DEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAG 218


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.139    0.447 

Gapped
Lambda     K      H
   0.267   0.0482    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 308,905
Number of extensions: 11289
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 4
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.5 bits)