Query psy17848
Match_columns 363
No_of_seqs 155 out of 1268
Neff 7.6
Searched_HMMs 46136
Date Sat Aug 17 00:35:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17848.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17848hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00014 myosin-A; Provisional 100.0 2.7E-77 5.8E-82 629.8 28.9 280 1-344 343-628 (821)
2 COG5022 Myosin heavy chain [Cy 100.0 1.5E-77 3.2E-82 634.9 25.4 280 1-344 315-596 (1463)
3 cd01381 MYSc_type_VII Myosin m 100.0 7.2E-77 1.6E-81 618.7 28.8 281 1-344 245-528 (671)
4 cd01377 MYSc_type_II Myosin mo 100.0 1.8E-76 3.9E-81 618.3 30.0 282 1-345 260-543 (693)
5 cd01380 MYSc_type_V Myosin mot 100.0 1.4E-76 3.1E-81 618.8 29.0 282 1-344 251-534 (691)
6 cd01384 MYSc_type_XI Myosin mo 100.0 5.4E-76 1.2E-80 611.8 29.4 280 1-345 250-533 (674)
7 cd01378 MYSc_type_I Myosin mot 100.0 1.2E-75 2.6E-80 610.5 29.4 279 1-344 248-533 (674)
8 cd01383 MYSc_type_VIII Myosin 100.0 2.4E-75 5.1E-80 607.2 29.9 275 1-342 250-525 (677)
9 cd01387 MYSc_type_XV Myosin mo 100.0 5.3E-75 1.1E-79 605.3 30.5 278 1-344 246-526 (677)
10 cd01385 MYSc_type_IX Myosin mo 100.0 7.2E-75 1.6E-79 605.5 31.1 280 1-344 256-542 (692)
11 cd01382 MYSc_type_VI Myosin mo 100.0 2.6E-74 5.7E-79 603.3 28.9 288 1-344 276-572 (717)
12 smart00242 MYSc Myosin. Large 100.0 5.3E-74 1.2E-78 600.0 29.9 281 1-345 254-536 (677)
13 cd00124 MYSc Myosin motor doma 100.0 7E-73 1.5E-77 592.8 31.1 280 1-344 246-528 (679)
14 cd01379 MYSc_type_III Myosin m 100.0 1.9E-72 4.2E-77 583.4 29.5 275 1-342 251-533 (653)
15 PF00063 Myosin_head: Myosin h 100.0 2.5E-72 5.4E-77 592.6 27.5 283 1-345 249-536 (689)
16 KOG0164|consensus 100.0 1.4E-72 3E-77 559.4 22.4 301 1-360 258-567 (1001)
17 cd01386 MYSc_type_XVIII Myosin 100.0 2E-69 4.3E-74 568.1 29.5 278 1-343 248-567 (767)
18 KOG0162|consensus 100.0 9.4E-70 2E-74 539.5 21.8 283 1-348 266-554 (1106)
19 KOG0161|consensus 100.0 9E-67 2E-71 575.2 22.7 280 1-342 334-614 (1930)
20 KOG0163|consensus 100.0 6E-66 1.3E-70 513.2 21.6 307 1-363 329-647 (1259)
21 KOG0160|consensus 100.0 4.9E-60 1.1E-64 490.7 20.9 277 1-342 254-530 (862)
22 KOG4229|consensus 100.0 6.7E-52 1.4E-56 439.6 12.7 280 1-343 309-592 (1062)
23 KOG0161|consensus 98.1 2.9E-06 6.2E-11 96.9 4.7 162 146-336 413-593 (1930)
24 COG5022 Myosin heavy chain [Cy 98.0 5.1E-06 1.1E-10 91.3 3.5 170 138-340 387-577 (1463)
25 PTZ00014 myosin-A; Provisional 97.9 2.8E-06 6.1E-11 91.3 0.9 167 139-339 422-608 (821)
26 cd01380 MYSc_type_V Myosin mot 97.8 1E-05 2.2E-10 86.0 2.7 126 196-338 370-513 (691)
27 cd01381 MYSc_type_VII Myosin m 97.6 2E-05 4.3E-10 83.5 2.0 128 196-339 364-508 (671)
28 cd01377 MYSc_type_II Myosin mo 97.6 1.7E-05 3.6E-10 84.4 1.2 128 196-339 376-522 (693)
29 cd01383 MYSc_type_VIII Myosin 97.6 1.7E-05 3.6E-10 84.1 0.9 123 196-340 367-509 (677)
30 cd01384 MYSc_type_XI Myosin mo 97.6 1.7E-05 3.6E-10 84.0 0.7 124 196-339 369-512 (674)
31 cd01378 MYSc_type_I Myosin mot 97.6 2E-05 4.3E-10 83.6 1.2 128 196-340 368-514 (674)
32 cd01387 MYSc_type_XV Myosin mo 97.6 3.2E-05 6.9E-10 82.0 2.2 125 195-339 362-506 (677)
33 cd01379 MYSc_type_III Myosin m 97.5 4.2E-05 9.1E-10 80.8 1.5 125 196-339 375-517 (653)
34 cd01382 MYSc_type_VI Myosin mo 97.4 6E-05 1.3E-09 80.5 2.1 136 196-339 399-552 (717)
35 cd01385 MYSc_type_IX Myosin mo 97.4 6.2E-05 1.3E-09 80.1 1.1 127 196-339 378-522 (692)
36 smart00242 MYSc Myosin. Large 97.3 6.7E-05 1.5E-09 79.7 1.0 128 196-339 371-515 (677)
37 cd00124 MYSc Myosin motor doma 97.2 7.8E-05 1.7E-09 79.4 0.3 126 196-339 364-508 (679)
38 cd01386 MYSc_type_XVIII Myosin 97.1 0.0002 4.3E-09 76.9 1.6 127 196-333 375-541 (767)
39 KOG0164|consensus 97.0 0.00071 1.5E-08 70.0 4.7 177 141-339 332-528 (1001)
40 KOG0160|consensus 96.8 0.00076 1.6E-08 72.3 3.2 207 90-344 295-517 (862)
41 PF00063 Myosin_head: Myosin h 95.3 0.0046 1E-07 66.2 -0.1 125 196-335 366-511 (689)
42 KOG0163|consensus 93.2 0.054 1.2E-06 56.9 2.5 165 148-339 419-606 (1259)
43 KOG4229|consensus 66.6 3 6.6E-05 46.5 1.6 129 196-340 429-574 (1062)
44 KOG0162|consensus 53.6 5.9 0.00013 42.2 1.0 167 140-340 343-531 (1106)
45 COG4103 Uncharacterized protei 36.9 37 0.0008 28.9 3.0 19 39-57 124-142 (148)
46 PF02954 HTH_8: Bacterial regu 27.0 73 0.0016 20.8 2.6 19 41-59 21-39 (42)
47 PF02376 CUT: CUT domain; Int 24.6 1.2E+02 0.0025 23.5 3.8 43 43-108 32-74 (87)
48 COG1924 Activator of 2-hydroxy 23.8 3.2E+02 0.0068 27.4 7.4 79 32-111 259-341 (396)
49 PF12244 DUF3606: Protein of u 22.0 1.3E+02 0.0028 21.3 3.3 28 33-60 15-42 (57)
50 PF01381 HTH_3: Helix-turn-hel 21.8 81 0.0017 21.3 2.2 21 35-55 35-55 (55)
51 PHA01976 helix-turn-helix prot 20.5 1.1E+02 0.0024 21.6 2.8 22 35-56 41-62 (67)
52 COG2522 Predicted transcriptio 20.3 99 0.0021 25.6 2.7 21 42-62 26-46 (119)
53 PF12728 HTH_17: Helix-turn-he 20.1 1.1E+02 0.0025 20.4 2.7 23 41-63 4-26 (51)
No 1
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=2.7e-77 Score=629.76 Aligned_cols=280 Identities=30% Similarity=0.540 Sum_probs=256.2
Q ss_pred CChHHHHHHHHHHHHHHHHcCceEEeecC---CCccccCC--hHHHHHHHHHcCCCHHHHHHHhccceeeecceEEEecc
Q psy17848 1 MPPPTVRAIFRIVSAVMLFGSMQFKQERN---SDQASLPD--NTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQ 75 (363)
Q Consensus 1 ~s~~e~~~I~~ilaaILhLGni~f~~~~~---~~~~~i~~--~~~~~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~~~ 75 (363)
|+++|+..||+|||||||||||+|...+. .+.+.+.+ .+.++.||+||||++++|.++|+.+++.+|++.+++++
T Consensus 343 ~s~~e~~~If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~~ 422 (821)
T PTZ00014 343 LSESQIEDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISDESLEVFNEACELLFLDYESLKKELTVKVTYAGNQKIEGPW 422 (821)
T ss_pred CCHHHHHHHHHHHHHHHhhcceeEeccccCCCCCceeccCCCHHHHHHHHHHhCCCHHHHHHHhhceEEEeCCeeEecCC
Confidence 68999999999999999999999986532 34566655 45899999999999999999999999999999999999
Q ss_pred chhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCCceEEEEeecccccccCcCcHHHHHhhhhhHHHHH
Q psy17848 76 TKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQ 155 (363)
Q Consensus 76 ~~~~~~~~~~~a~~~rdalak~LY~~LF~wiv~~iN~~L~~~~~~~~~~IgiLDi~GFE~~~~NsfeQlcINyanE~Lq~ 155 (363)
+++| |..+||+|||+||+|||+|||.+||.+|.+... ...+||||||||||+|+.|||||||||||||+||+
T Consensus 423 ~~~q-------A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~-~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq 494 (821)
T PTZ00014 423 SKDE-------SEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGG-FKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQK 494 (821)
T ss_pred CHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cCceEEEEecccccccCcchHHHHHHHHHHHHHHH
Confidence 9999 999999999999999999999999999986543 45799999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHhCCcccccccCCChhHHHHhhc-CcchhhhhhhhhccCCCCChHHHHHHHHHhhcccccccccc
Q psy17848 156 LFNHTMFILEQEEYQREGIEWKFIDFGLDLQPTIDLID-KPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTD 234 (363)
Q Consensus 156 ~f~~~~f~~e~~~Y~~Egi~~~~i~~~~d~~~~ldli~-~p~Gil~lLdee~~~~~~~d~~f~~kl~~~~~~~~~~~~~~ 234 (363)
+|++++|+.||++|.+|||+|..++|. ||++|+|||+ +|.|||++|||||++|+++|++|++|+++.+++
T Consensus 495 ~F~~~vF~~EqeeY~~EgI~~~~i~f~-dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~-------- 565 (821)
T PTZ00014 495 NFVDIVFERESKLYKDEGISTEELEYT-SNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCNTNLKN-------- 565 (821)
T ss_pred HHHHHHHHHHHHHHHHccccCCCCCCC-CcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHHHHHHhcC--------
Confidence 999999999999999999999999996 9999999998 578999999999999999999999999876654
Q ss_pred ccCCccceeeeccCCcccccccccccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccchh
Q psy17848 235 FRGVADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLM 314 (363)
Q Consensus 235 ~~~~~~~~~~~~~~~~~gil~lldee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gfle 314 (363)
||+|.+++...+..|+|+||||+|+|++.||++
T Consensus 566 -----------------------------------------------~~~f~~~~~~~~~~F~I~HyAG~V~Y~~~gfle 598 (821)
T PTZ00014 566 -----------------------------------------------NPKYKPAKVDSNKNFVIKHTIGDIQYCASGFLF 598 (821)
T ss_pred -----------------------------------------------CCCccCCCCCCCCceEEEEeceeeeeccCcHHH
Confidence 566666554455689999999999999999999
Q ss_pred hcCCchhHHHHHHHHhcCcHHHHhhcccch
Q psy17848 315 KNMDPLNENVVSLLQVSQDPFVAHIWKDAE 344 (363)
Q Consensus 315 kN~d~l~~~~~~ll~~S~~~~i~~lf~~~~ 344 (363)
||+|.|+.+++++|++|++++|+.||++..
T Consensus 599 KNkD~l~~~~~~ll~~S~n~~i~~lf~~~~ 628 (821)
T PTZ00014 599 KNKDVLRPELVEVVKASPNPLVRDLFEGVE 628 (821)
T ss_pred hccccchHHHHHHHHhCccHHHHHHhcccc
Confidence 999999999999999999999999998754
No 2
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.5e-77 Score=634.90 Aligned_cols=280 Identities=49% Similarity=0.861 Sum_probs=260.6
Q ss_pred CChHHHHHHHHHHHHHHHHcCceEEeecCCCccccCChHHHHHHHHHcCCCHHHHHHHhccceeeecceEEEeccchhhh
Q psy17848 1 MPPPTVRAIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQW 80 (363)
Q Consensus 1 ~s~~e~~~I~~ilaaILhLGni~f~~~~~~~~~~i~~~~~~~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (363)
|+.+||..||+|||||||||||+|.++.+ +++.+++.+.++.+|+|||||+..+.++|+.+.+++|+|.+..+++..|
T Consensus 315 i~~eeq~~IF~iLAaILhiGNIef~~~r~-g~a~~~~~~~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~Q- 392 (1463)
T COG5022 315 IDEEEQDQIFKILAAILHIGNIEFKEDRN-GAAIFSDNSVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQ- 392 (1463)
T ss_pred CChHHHHHHHHHHHHHHhhcceeeeeccc-chhhcCCchHHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHH-
Confidence 57899999999999999999999987643 4677889999999999999999999999999999999999999999999
Q ss_pred ccChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCCceEEEEeecccccccCcCcHHHHHhhhhhHHHHHHHHHh
Q psy17848 81 FKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHT 160 (363)
Q Consensus 81 ~~~~~~a~~~rdalak~LY~~LF~wiv~~iN~~L~~~~~~~~~~IgiLDi~GFE~~~~NsfeQlcINyanE~Lq~~f~~~ 160 (363)
|...||+|||+||++||+|||.+||.+|..+.. ..++||||||||||+|+.|||||||||||||+||+.|+++
T Consensus 393 ------A~~irdslAK~lY~~lFdwiV~rIN~sL~~~~~-~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h 465 (1463)
T COG5022 393 ------ALAIRDSLAKALYSNLFDWIVDRINKSLDHSAA-ASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQH 465 (1463)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc-cccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHH
Confidence 999999999999999999999999999987544 4579999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhCCcccccccCCChhHHHHhhcC--cchhhhhhhhhccCCCCChHHHHHHHHHhhccccccccccccCC
Q psy17848 161 MFILEQEEYQREGIEWKFIDFGLDLQPTIDLIDK--PMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGV 238 (363)
Q Consensus 161 ~f~~e~~~Y~~Egi~~~~i~~~~d~~~~ldli~~--p~Gil~lLdee~~~~~~~d~~f~~kl~~~~~~~~~~~~~~~~~~ 238 (363)
||+.||++|.+|||+|..|+| .|||+|+||||+ |.|||++|||||++|.++|++|.+||.+.+..
T Consensus 466 ~FklEQEeY~kE~IeW~~Idy-~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~~------------ 532 (1463)
T COG5022 466 MFKLEQEEYVKEGIEWSFIDY-FDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNK------------ 532 (1463)
T ss_pred HHHHHHHHHHHhcCccccccc-ccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhcc------------
Confidence 999999999999999999999 699999999997 99999999999999999999999999887652
Q ss_pred ccceeeeccCCcccccccccccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccchhhcCC
Q psy17848 239 ADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLMKNMD 318 (363)
Q Consensus 239 ~~~~~~~~~~~~~gil~lldee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gflekN~d 318 (363)
..+++|.+++.++ ..|+|+||||.|+|+++||++||+|
T Consensus 533 -----------------------------------------~~~~~f~~~rf~~-~~FvvkHYAgDVeY~veg~ldKNkD 570 (1463)
T COG5022 533 -----------------------------------------NSNPKFKKSRFRD-NKFVVKHYAGDVEYDVEGFLDKNKD 570 (1463)
T ss_pred -----------------------------------------ccCccccccccCC-CceEEEeecccceeeccchhhhCcc
Confidence 1157788777654 4699999999999999999999999
Q ss_pred chhHHHHHHHHhcCcHHHHhhcccch
Q psy17848 319 PLNENVVSLLQVSQDPFVAHIWKDAE 344 (363)
Q Consensus 319 ~l~~~~~~ll~~S~~~~i~~lf~~~~ 344 (363)
+++.++++|+..|+|+++..||++..
T Consensus 571 ~l~~~ll~Ll~~StNe~vs~Lf~~~~ 596 (1463)
T COG5022 571 PLNDDLLELLKASTNEFVSTLFDDEE 596 (1463)
T ss_pred hhhHHHHHHHhhccchHHHHhhhhhh
Confidence 99999999999999999999999443
No 3
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=7.2e-77 Score=618.73 Aligned_cols=281 Identities=36% Similarity=0.641 Sum_probs=259.2
Q ss_pred CChHHHHHHHHHHHHHHHHcCceEEeecC--CCccccCChHHHHHHHHHcCCCHHHHHHHhccceeeecceEEEeccchh
Q psy17848 1 MPPPTVRAIFRIVSAVMLFGSMQFKQERN--SDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKE 78 (363)
Q Consensus 1 ~s~~e~~~I~~ilaaILhLGni~f~~~~~--~~~~~i~~~~~~~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~~~~~~ 78 (363)
|+++|+..||+|||||||||||+|+..+. .+.+.+.+.+.++.||+||||++++|.++|+++++.++++.+.++++++
T Consensus 245 ~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~~~~~~~ 324 (671)
T cd01381 245 FTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDDTPNLQRVAQLLGVPIQDLMDALTSRTIFTRGETVVTPLSRE 324 (671)
T ss_pred CCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCChHHHHHHHHHhCCCHHHHhhhhceEEEEeCCceEEecCCHH
Confidence 68999999999999999999999987642 3467888999999999999999999999999999999999999999999
Q ss_pred hhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCCceEEEEeecccccccCcCcHHHHHhhhhhHHHHHHHH
Q psy17848 79 QWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFN 158 (363)
Q Consensus 79 ~~~~~~~~a~~~rdalak~LY~~LF~wiv~~iN~~L~~~~~~~~~~IgiLDi~GFE~~~~NsfeQlcINyanE~Lq~~f~ 158 (363)
| |..+||+|||+||+|||+|||.+||++|.++......+||||||||||+|+.|||||||||||||+||++|+
T Consensus 325 q-------A~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkLQ~~f~ 397 (671)
T cd01381 325 Q-------AVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENLQQFFV 397 (671)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9 999999999999999999999999999986544456799999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHhCCcccccccCCChhHHHHhhc-CcchhhhhhhhhccCCCCChHHHHHHHHHhhccccccccccccC
Q psy17848 159 HTMFILEQEEYQREGIEWKFIDFGLDLQPTIDLID-KPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRG 237 (363)
Q Consensus 159 ~~~f~~e~~~Y~~Egi~~~~i~~~~d~~~~ldli~-~p~Gil~lLdee~~~~~~~d~~f~~kl~~~~~~~~~~~~~~~~~ 237 (363)
+++|+.||++|++|||+|..++|. ||++|+|||+ +|.|||++|||||++|+++|++|++|+++.++.
T Consensus 398 ~~vf~~eq~eY~~EgI~~~~i~f~-dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~~~~~~----------- 465 (671)
T cd01381 398 QHIFKLEQEEYNLEHINWQHIEFV-DNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHSQHGL----------- 465 (671)
T ss_pred HHHHHHHHHHHHHcCCCCCccCcc-CcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHHHHhcC-----------
Confidence 999999999999999999999995 9999999998 678999999999999999999999998776654
Q ss_pred CccceeeeccCCcccccccccccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccchhhcC
Q psy17848 238 VADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLMKNM 317 (363)
Q Consensus 238 ~~~~~~~~~~~~~~gil~lldee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gflekN~ 317 (363)
|+.|.+++...+..|+|+||||+|+|++.||++||+
T Consensus 466 --------------------------------------------~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~ 501 (671)
T cd01381 466 --------------------------------------------HSNYLKPKSTQETQFGINHFAGVVFYDTRGFLEKNR 501 (671)
T ss_pred --------------------------------------------CCCcccCCCCCCCceEEEEecceEeeccCCHHHhcc
Confidence 555655554456689999999999999999999999
Q ss_pred CchhHHHHHHHHhcCcHHHHhhcccch
Q psy17848 318 DPLNENVVSLLQVSQDPFVAHIWKDAE 344 (363)
Q Consensus 318 d~l~~~~~~ll~~S~~~~i~~lf~~~~ 344 (363)
|.++.+++++|+.|++++|+.||+...
T Consensus 502 D~l~~~~~~ll~~S~n~~i~~lf~~~~ 528 (671)
T cd01381 502 DTFSGDLSQLVQSSKNKFLKQIFQADV 528 (671)
T ss_pred chhhHHHHHHHHhChHHHHHHHhcccc
Confidence 999999999999999999999998754
No 4
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=1.8e-76 Score=618.29 Aligned_cols=282 Identities=60% Similarity=1.004 Sum_probs=258.8
Q ss_pred CChHHHHHHHHHHHHHHHHcCceEEeecCCCccccCChHHHHHHHHHcCCCHHHHHHHhccceeeecceEEEeccchhhh
Q psy17848 1 MPPPTVRAIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQW 80 (363)
Q Consensus 1 ~s~~e~~~I~~ilaaILhLGni~f~~~~~~~~~~i~~~~~~~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (363)
|+++++..||+|||||||||||+|...++.+.+.+.+.+.+..||+||||++++|.++|+++++.++++.+++++++++
T Consensus 260 ~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~~- 338 (693)
T cd01377 260 FSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGTEEADKAAHLLGVNSADLLKALLHPRIKVGREWVTKGQNVEQ- 338 (693)
T ss_pred CCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCChHHHHHHHHHhCCCHHHHHHHhcceEEEECCeeEeeCCCHHH-
Confidence 6899999999999999999999999876667788899999999999999999999999999999999999999999999
Q ss_pred ccChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCCceEEEEeecccccccCcCcHHHHHhhhhhHHHHHHHHHh
Q psy17848 81 FKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHT 160 (363)
Q Consensus 81 ~~~~~~a~~~rdalak~LY~~LF~wiv~~iN~~L~~~~~~~~~~IgiLDi~GFE~~~~NsfeQlcINyanE~Lq~~f~~~ 160 (363)
|..+||+|||+||++||+|||.+||.+|.+. .....+||||||||||+|+.|||||||||||||+||++|+++
T Consensus 339 ------A~~~rDalak~lY~~LF~wiV~~IN~~l~~~-~~~~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~ 411 (693)
T cd01377 339 ------VSFSVGALAKALYERLFLWLVKRINKTLDTK-QQRAYFIGVLDIAGFEIFDFNSFEQLCINYTNEKLQQFFNHH 411 (693)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCceEEEEecccccccCCCCHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999999999999999875 345678999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhCCcccccccCCChhHHHHhhcC-cchhhhhhhhhccCCCCChHHHHHHHHHhhccccccccccccCCc
Q psy17848 161 MFILEQEEYQREGIEWKFIDFGLDLQPTIDLIDK-PMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVA 239 (363)
Q Consensus 161 ~f~~e~~~Y~~Egi~~~~i~~~~d~~~~ldli~~-p~Gil~lLdee~~~~~~~d~~f~~kl~~~~~~~~~~~~~~~~~~~ 239 (363)
+|+.||++|++|||+|..++|+.||++|+|||++ |.|||++|||||++|+++|++|++|+++.++++
T Consensus 412 vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~~~~~~~------------ 479 (693)
T cd01377 412 MFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHLGK------------ 479 (693)
T ss_pred HHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHHHHhcCC------------
Confidence 9999999999999999999996599999999996 889999999999999999999999998777653
Q ss_pred cceeeeccCCcccccccccccccCCCCCchHHHHHHHhhccCCCCC-cccCCCCCccceeeeeccceeeccccchhhcCC
Q psy17848 240 DFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKF-KKTDFRGVADFAIVHYAGKVDYSAEKWLMKNMD 318 (363)
Q Consensus 240 ~~~~~~~~~~~~gil~lldee~~~p~~~d~~fl~~l~~~~~~~~~~-~~~~~~~~~~F~I~H~aG~V~Y~~~gflekN~d 318 (363)
+.| ..++...+..|+|+||||+|+|++.||++||+|
T Consensus 480 -------------------------------------------~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D 516 (693)
T cd01377 480 -------------------------------------------SKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKD 516 (693)
T ss_pred -------------------------------------------CcccccCCCCCCCcEEEEeeceeEeeccccHHHhccc
Confidence 222 111223355899999999999999999999999
Q ss_pred chhHHHHHHHHhcCcHHHHhhcccchh
Q psy17848 319 PLNENVVSLLQVSQDPFVAHIWKDAEI 345 (363)
Q Consensus 319 ~l~~~~~~ll~~S~~~~i~~lf~~~~~ 345 (363)
.++.+++++|++|++++|+.||+....
T Consensus 517 ~l~~~~~~ll~~S~~~~i~~lf~~~~~ 543 (693)
T cd01377 517 PLNDNVVGLLKKSSDKLVAELFKDYAE 543 (693)
T ss_pred cccHHHHHHHHhCchHHHHHHhhhhcc
Confidence 999999999999999999999987543
No 5
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=1.4e-76 Score=618.85 Aligned_cols=282 Identities=40% Similarity=0.739 Sum_probs=256.9
Q ss_pred CChHHHHHHHHHHHHHHHHcCceEEeecCCCccccCChHHHHHHHHHcCCCHHHHHHHhccceeeecceEEEeccchhhh
Q psy17848 1 MPPPTVRAIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQW 80 (363)
Q Consensus 1 ~s~~e~~~I~~ilaaILhLGni~f~~~~~~~~~~i~~~~~~~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (363)
|+++|+..||+|||||||||||+|...++.......+.+.++.||+||||++++|.++|+.+++.++++.+.++++++|
T Consensus 251 ~s~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~q- 329 (691)
T cd01380 251 ISEEQQMDIFKLLAALLHLGNIEIEATRNDSSSISPKDENLQIACELLGVDASDLRKWLVKRQIVTRSEKIVKPLTKEQ- 329 (691)
T ss_pred CCHHHHHHHHHHHHHHHhccceeeeccCCccceecCChHHHHHHHHHhCCCHHHHHHHHHhCEEEECCeeEEecCCHHH-
Confidence 6899999999999999999999998765433333345678999999999999999999999999999999999999999
Q ss_pred ccChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCccc--CCCceEEEEeecccccccCcCcHHHHHhhhhhHHHHHHHH
Q psy17848 81 FKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTK--RQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFN 158 (363)
Q Consensus 81 ~~~~~~a~~~rdalak~LY~~LF~wiv~~iN~~L~~~~--~~~~~~IgiLDi~GFE~~~~NsfeQlcINyanE~Lq~~f~ 158 (363)
|..+||+|||+||+|||+|||.+||.+|.+.. .....+||||||||||+|+.|||||||||||||+||++|+
T Consensus 330 ------A~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~ 403 (691)
T cd01380 330 ------AIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANEKLQQQFN 403 (691)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhHHHHHHHH
Confidence 99999999999999999999999999998763 3446789999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHhCCcccccccCCChhHHHHhhcCcchhhhhhhhhccCCCCChHHHHHHHHHhhccccccccccccCC
Q psy17848 159 HTMFILEQEEYQREGIEWKFIDFGLDLQPTIDLIDKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGV 238 (363)
Q Consensus 159 ~~~f~~e~~~Y~~Egi~~~~i~~~~d~~~~ldli~~p~Gil~lLdee~~~~~~~d~~f~~kl~~~~~~~~~~~~~~~~~~ 238 (363)
+++|..||++|.+|||+|..++|. ||++|+|||++|.|||++|||||++|+++|++|++|+++.++..
T Consensus 404 ~~iF~~eq~~Y~~EgI~~~~i~f~-DN~~~ldLie~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~----------- 471 (691)
T cd01380 404 QHVFKLEQEEYLKEGIEWTFIDFY-DNQPCIDLIESKLGILSLLDEECRLPKGSDESWAQKLYNKLPKK----------- 471 (691)
T ss_pred HHHHHHHHHHHHhcCCCCccccCC-CCHHHHHHHhCCCchHHHhHHhhcCCCCChHHHHHHHHHHhccc-----------
Confidence 999999999999999999999996 99999999999999999999999999999999999998766520
Q ss_pred ccceeeeccCCcccccccccccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccchhhcCC
Q psy17848 239 ADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLMKNMD 318 (363)
Q Consensus 239 ~~~~~~~~~~~~~gil~lldee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gflekN~d 318 (363)
.||.|.+++.. +..|+|+||||+|+|++.||++||+|
T Consensus 472 ------------------------------------------~~~~~~~~~~~-~~~F~I~HyAG~V~Y~v~gfleKNrD 508 (691)
T cd01380 472 ------------------------------------------KNPHFEKPRFG-QTSFTVKHFADDVEYDVDGFLEKNRD 508 (691)
T ss_pred ------------------------------------------CCCCccCCCCC-CCeeEEEEccCCcccccccHHHhccc
Confidence 15666665543 45799999999999999999999999
Q ss_pred chhHHHHHHHHhcCcHHHHhhcccch
Q psy17848 319 PLNENVVSLLQVSQDPFVAHIWKDAE 344 (363)
Q Consensus 319 ~l~~~~~~ll~~S~~~~i~~lf~~~~ 344 (363)
.++.+++++|++|++++|+.||+...
T Consensus 509 ~l~~~~~~ll~~S~~~~i~~lf~~~~ 534 (691)
T cd01380 509 TVSDEHLDVLKASKNPFLKEVLDAAE 534 (691)
T ss_pred cccHHHHHHHHhCccHHHHHHhhhhc
Confidence 99999999999999999999997754
No 6
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=5.4e-76 Score=611.76 Aligned_cols=280 Identities=40% Similarity=0.686 Sum_probs=255.7
Q ss_pred CChHHHHHHHHHHHHHHHHcCceEEeecCCCccccCC---hHHHHHHHHHcCCCHHHHHHHhccceeeecceEEEeccch
Q psy17848 1 MPPPTVRAIFRIVSAVMLFGSMQFKQERNSDQASLPD---NTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTK 77 (363)
Q Consensus 1 ~s~~e~~~I~~ilaaILhLGni~f~~~~~~~~~~i~~---~~~~~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~~~~~ 77 (363)
|+++++..||+|||||||||||+|+.....+.+.+.+ .+.++.||+||||++++|.++|+++++.++++.+.+++++
T Consensus 250 ~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~~~~ 329 (674)
T cd01384 250 ISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTPEEVITKPLDP 329 (674)
T ss_pred CCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceEEecCCH
Confidence 6899999999999999999999998765445555543 4789999999999999999999999999999999999999
Q ss_pred hhhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCCceEEEEeecccccccCcCcHHHHHhhhhhHHHHHHH
Q psy17848 78 EQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLF 157 (363)
Q Consensus 78 ~~~~~~~~~a~~~rdalak~LY~~LF~wiv~~iN~~L~~~~~~~~~~IgiLDi~GFE~~~~NsfeQlcINyanE~Lq~~f 157 (363)
++ |..+||+|||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+||++|
T Consensus 330 ~~-------a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f 401 (674)
T cd01384 330 DS-------AELSRDALAKTIYSRLFDWLVNKINSSIGQDP-DSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHF 401 (674)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCeEEEEEecccccccCcCCHHHHHhhhhHHHHHHHH
Confidence 99 99999999999999999999999999998753 34578999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHhCCcccccccCCChhHHHHhhcC-cchhhhhhhhhccCCCCChHHHHHHHHHhhcccccccccccc
Q psy17848 158 NHTMFILEQEEYQREGIEWKFIDFGLDLQPTIDLIDK-PMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFR 236 (363)
Q Consensus 158 ~~~~f~~e~~~Y~~Egi~~~~i~~~~d~~~~ldli~~-p~Gil~lLdee~~~~~~~d~~f~~kl~~~~~~~~~~~~~~~~ 236 (363)
++++|..||++|.+|||+|..++|. ||++|+|||++ |.|||++|||||++|+++|++|++|+++.+++
T Consensus 402 ~~~if~~eq~eY~~EgI~~~~i~~~-DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~---------- 470 (674)
T cd01384 402 NQHVFKMEQEEYTKEEIDWSYIEFV-DNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKD---------- 470 (674)
T ss_pred HHHHHHHHHHHHHhcCCCCCcccCC-ChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHHHHhcC----------
Confidence 9999999999999999999999995 99999999996 78999999999999999999999999776554
Q ss_pred CCccceeeeccCCcccccccccccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccchhhc
Q psy17848 237 GVADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLMKN 316 (363)
Q Consensus 237 ~~~~~~~~~~~~~~~gil~lldee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gflekN 316 (363)
||+|.+++.. +..|+|+||||+|+|++.||++||
T Consensus 471 ---------------------------------------------~~~~~~~~~~-~~~F~I~HyAG~V~Y~v~gfleKN 504 (674)
T cd01384 471 ---------------------------------------------HKRFEKPKLS-RTAFTIDHYAGDVTYQTDQFLDKN 504 (674)
T ss_pred ---------------------------------------------CCCCCCCCCC-CCeeEEEEecceeeecCCCHHHhc
Confidence 5556655443 458999999999999999999999
Q ss_pred CCchhHHHHHHHHhcCcHHHHhhcccchh
Q psy17848 317 MDPLNENVVSLLQVSQDPFVAHIWKDAEI 345 (363)
Q Consensus 317 ~d~l~~~~~~ll~~S~~~~i~~lf~~~~~ 345 (363)
+|.++.+++.+|++|++++|+.||+....
T Consensus 505 ~D~l~~~~~~ll~~S~n~~i~~lf~~~~~ 533 (674)
T cd01384 505 KDYVVAEHQALLNASNCSFVAGLFPPLPE 533 (674)
T ss_pred CCcccHHHHHHHHhCchHHHHHHhccccc
Confidence 99999999999999999999999987544
No 7
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=1.2e-75 Score=610.47 Aligned_cols=279 Identities=39% Similarity=0.678 Sum_probs=255.4
Q ss_pred CChHHHHHHHHHHHHHHHHcCceEEeecCCCccccCChHHHHHHHHHcCCCHHHHHHHhccceeeecc----eEEEeccc
Q psy17848 1 MPPPTVRAIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGR----DFVTKSQT 76 (363)
Q Consensus 1 ~s~~e~~~I~~ilaaILhLGni~f~~~~~~~~~~i~~~~~~~~~a~LLgv~~~~L~~~l~~~~~~~~~----~~~~~~~~ 76 (363)
|+++|+..||+|||||||||||+|...++ +.+.+.+.+.++.||+||||++++|.++|+++++.+++ +.+.++++
T Consensus 248 ~s~~e~~~i~~ilaaILhLGni~f~~~~~-~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~e~i~~~~~ 326 (674)
T cd01378 248 FSEDEQDEIFRIVAAILHLGNVQFAENGD-GAAVISDKDVLDFAAYLLGVDPSELEKALTSRTIETGGGGRGEVYDVPLN 326 (674)
T ss_pred CCHHHHHHHHHHHHHHHhhcceEEeccCC-CccccCChHHHHHHHHHcCCCHHHHHHHhcccEEEeCCCCCceeEEecCC
Confidence 68999999999999999999999986543 33677889999999999999999999999999999988 99999999
Q ss_pred hhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCCceEEEEeecccccccCcCcHHHHHhhhhhHHHHHH
Q psy17848 77 KEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQL 156 (363)
Q Consensus 77 ~~~~~~~~~~a~~~rdalak~LY~~LF~wiv~~iN~~L~~~~~~~~~~IgiLDi~GFE~~~~NsfeQlcINyanE~Lq~~ 156 (363)
+++ |..+||+|||+||+|||+|||.+||++|.+.......+||||||||||+|+.|||||||||||||+||++
T Consensus 327 ~~~-------a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~ 399 (674)
T cd01378 327 VEQ-------AAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNEKLQQI 399 (674)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHHHHHHH
Confidence 999 9999999999999999999999999999976445567999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHhCCcccccccCCChhHHHHhhcC--cchhhhhhhhhccCC-CCChHHHHHHHHHhhccccccccc
Q psy17848 157 FNHTMFILEQEEYQREGIEWKFIDFGLDLQPTIDLIDK--PMGIMALLDEECWFP-KATDRSFVEKLVQSHSQHAKFKKT 233 (363)
Q Consensus 157 f~~~~f~~e~~~Y~~Egi~~~~i~~~~d~~~~ldli~~--p~Gil~lLdee~~~~-~~~d~~f~~kl~~~~~~~~~~~~~ 233 (363)
|++++|..||++|++|||+|..++|. ||++|+|||++ |.|||++|||||++| +++|++|++|+++.+++
T Consensus 400 f~~~~F~~eq~~Y~~EgI~~~~i~f~-DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~~~~~------- 471 (674)
T cd01378 400 FIELTLKAEQEEYVREGIKWTPIEYF-NNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSS------- 471 (674)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcCcC-ChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHHHhcc-------
Confidence 99999999999999999999999995 99999999985 889999999999999 89999999999887655
Q ss_pred cccCCccceeeeccCCcccccccccccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccch
Q psy17848 234 DFRGVADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWL 313 (363)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~gil~lldee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gfl 313 (363)
||++..++ ..+..|+|+||||+|+|++.||+
T Consensus 472 ------------------------------------------------~~~~~~~~-~~~~~F~I~HyAG~V~Y~~~gfl 502 (674)
T cd01378 472 ------------------------------------------------HPHSDHFS-SGSDEFRIKHYAGDVTYSVEGFC 502 (674)
T ss_pred ------------------------------------------------CCCCCCCC-CCCCcEEEEEeceeeeecCcCHH
Confidence 33333222 23458999999999999999999
Q ss_pred hhcCCchhHHHHHHHHhcCcHHHHhhcccch
Q psy17848 314 MKNMDPLNENVVSLLQVSQDPFVAHIWKDAE 344 (363)
Q Consensus 314 ekN~d~l~~~~~~ll~~S~~~~i~~lf~~~~ 344 (363)
+||+|.++.+++++|++|++++|+.||++..
T Consensus 503 eKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~ 533 (674)
T cd01378 503 DKNKDTLFKDLIELMQSSSNPFLRSLFPEKS 533 (674)
T ss_pred HhhcchhhHHHHHHHHhCchHHHHHHhcccc
Confidence 9999999999999999999999999998644
No 8
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=2.4e-75 Score=607.22 Aligned_cols=275 Identities=37% Similarity=0.645 Sum_probs=252.6
Q ss_pred CChHHHHHHHHHHHHHHHHcCceEEeecCCCccccCChHHHHHHHHHcCCCHHHHHHHhccceeeecceEEEeccchhhh
Q psy17848 1 MPPPTVRAIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQW 80 (363)
Q Consensus 1 ~s~~e~~~I~~ilaaILhLGni~f~~~~~~~~~~i~~~~~~~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (363)
|+++|+..||+|||||||||||+|...++.+.+.+.+.+.+..||+||||++++|.++|+++++.++++.+.++++++|
T Consensus 250 ~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~~~~~q- 328 (677)
T cd01383 250 ISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVADEALSTAAKLIGCNIEDLMLALSTRKMHVNNDNIVQKLTLQQ- 328 (677)
T ss_pred CCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCChHHHHHHHHHhCCCHHHHHHHhhhcEEEeCCceEeecCCHHH-
Confidence 6899999999999999999999998766555566777889999999999999999999999999999999999999999
Q ss_pred ccChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCCceEEEEeecccccccCcCcHHHHHhhhhhHHHHHHHHHh
Q psy17848 81 FKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHT 160 (363)
Q Consensus 81 ~~~~~~a~~~rdalak~LY~~LF~wiv~~iN~~L~~~~~~~~~~IgiLDi~GFE~~~~NsfeQlcINyanE~Lq~~f~~~ 160 (363)
|..+||+|||+||+|||+|||.+||.+|.+.......+||||||||||+|+.|||||||||||||+||++|+++
T Consensus 329 ------a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~ 402 (677)
T cd01383 329 ------AIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANERLQQHFNRH 402 (677)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999765445679999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhCCcccccccCCChhHHHHhhc-CcchhhhhhhhhccCCCCChHHHHHHHHHhhccccccccccccCCc
Q psy17848 161 MFILEQEEYQREGIEWKFIDFGLDLQPTIDLID-KPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVA 239 (363)
Q Consensus 161 ~f~~e~~~Y~~Egi~~~~i~~~~d~~~~ldli~-~p~Gil~lLdee~~~~~~~d~~f~~kl~~~~~~~~~~~~~~~~~~~ 239 (363)
+|..||++|++|||+|..++|. ||++|+|||+ +|.|||++|||||++|+++|++|++|+++.+++
T Consensus 403 vF~~EqeeY~~EgI~~~~i~f~-dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~------------- 468 (677)
T cd01383 403 LFKLEQEEYEEDGIDWTKVEFE-DNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKT------------- 468 (677)
T ss_pred HHHHHHHHHHhcCCCcccccCC-CcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHHHHhCC-------------
Confidence 9999999999999999999996 9999999998 578999999999999999999999999776544
Q ss_pred cceeeeccCCcccccccccccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccchhhcCCc
Q psy17848 240 DFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLMKNMDP 319 (363)
Q Consensus 240 ~~~~~~~~~~~~gil~lldee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gflekN~d~ 319 (363)
||.|.+++ +..|+|+||||+|+|++.||++||+|.
T Consensus 469 ------------------------------------------~~~~~~~~---~~~F~I~HyAG~V~Y~v~gfleKNrD~ 503 (677)
T cd01383 469 ------------------------------------------NSCFRGER---GGAFTVRHYAGEVTYDTTGFLEKNRDL 503 (677)
T ss_pred ------------------------------------------CCCCCCCC---CCceEEEEeccceeecCCChHHhcccc
Confidence 55555432 347999999999999999999999999
Q ss_pred hhHHHHHHHHhcCcHHHHhhccc
Q psy17848 320 LNENVVSLLQVSQDPFVAHIWKD 342 (363)
Q Consensus 320 l~~~~~~ll~~S~~~~i~~lf~~ 342 (363)
++.+++.+|++|++++++ +|..
T Consensus 504 l~~~~~~ll~~S~~~~~~-~f~~ 525 (677)
T cd01383 504 LHSDSIQLLSSCKCQLPQ-LFAS 525 (677)
T ss_pred ccHHHHHHHHhCchHHHH-HHHh
Confidence 999999999999999876 6643
No 9
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=5.3e-75 Score=605.28 Aligned_cols=278 Identities=38% Similarity=0.649 Sum_probs=254.5
Q ss_pred CChHHHHHHHHHHHHHHHHcCceEEeecC--CCccccCChHHHHHHHHHcCCCHHHHHHHhccceeeecceEEEeccchh
Q psy17848 1 MPPPTVRAIFRIVSAVMLFGSMQFKQERN--SDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKE 78 (363)
Q Consensus 1 ~s~~e~~~I~~ilaaILhLGni~f~~~~~--~~~~~i~~~~~~~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~~~~~~ 78 (363)
|+++|+..||+|||||||||||+|..... .+.+.+.+++.++.||+||||++++|.++|+++++.++++.+.++++++
T Consensus 246 ~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~~~~~~~ 325 (677)
T cd01387 246 FSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVSAREIQAVAELLQISPEGLQKAITFKVTETRREKIFTPLTVE 325 (677)
T ss_pred CCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeCCceEeccCCHH
Confidence 68999999999999999999999987542 2356788889999999999999999999999999999999999999999
Q ss_pred hhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCCceEEEEeecccccccCcCcHHHHHhhhhhHHHHHHHH
Q psy17848 79 QWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFN 158 (363)
Q Consensus 79 ~~~~~~~~a~~~rdalak~LY~~LF~wiv~~iN~~L~~~~~~~~~~IgiLDi~GFE~~~~NsfeQlcINyanE~Lq~~f~ 158 (363)
+ |..+||+|||+||+|||+|||.+||.+|.+. ....+||||||||||+|+.|||||||||||||+||++|+
T Consensus 326 ~-------a~~~rdalak~lY~~lF~wiV~~iN~~l~~~--~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~ 396 (677)
T cd01387 326 S-------AVDARDAIAKVLYALLFNWLITRVNALVSPT--QDTLSIAILDIYGFEDLSFNSFEQLCINYANENLQYLFN 396 (677)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCceEEEEecCccccCCCCCHHHHHhHHHHHHHHHHHH
Confidence 9 9999999999999999999999999999874 335789999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHhCCcccccccCCChhHHHHhhc-CcchhhhhhhhhccCCCCChHHHHHHHHHhhccccccccccccC
Q psy17848 159 HTMFILEQEEYQREGIEWKFIDFGLDLQPTIDLID-KPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRG 237 (363)
Q Consensus 159 ~~~f~~e~~~Y~~Egi~~~~i~~~~d~~~~ldli~-~p~Gil~lLdee~~~~~~~d~~f~~kl~~~~~~~~~~~~~~~~~ 237 (363)
+++|+.||++|.+|||+|..++|. ||++|+|||+ +|.|||++|||||++|+++|++|++|++..++.
T Consensus 397 ~~vF~~eq~eY~~EgI~~~~i~f~-dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~~~~~~----------- 464 (677)
T cd01387 397 KIVFQEEQEEYIREQLDWTEIAFA-DNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCHYHHGA----------- 464 (677)
T ss_pred HHHHHHHHHHHHhcCCCCcccCcC-ChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHHHhccC-----------
Confidence 999999999999999999999995 9999999998 688999999999999999999999998765543
Q ss_pred CccceeeeccCCcccccccccccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccchhhcC
Q psy17848 238 VADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLMKNM 317 (363)
Q Consensus 238 ~~~~~~~~~~~~~~gil~lldee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gflekN~ 317 (363)
||.|.+++. +...|+|+||||+|+|++.||++||+
T Consensus 465 --------------------------------------------~~~~~~~~~-~~~~F~I~HyAG~V~Y~~~gfleKN~ 499 (677)
T cd01387 465 --------------------------------------------NPLYSKPKM-PLPEFTIKHYAGKVTYQVHKFLDKNH 499 (677)
T ss_pred --------------------------------------------CccccCCCC-CCCeeEEEEeCceeeecCCChHHhcc
Confidence 455555443 23579999999999999999999999
Q ss_pred CchhHHHHHHHHhcCcHHHHhhcccch
Q psy17848 318 DPLNENVVSLLQVSQDPFVAHIWKDAE 344 (363)
Q Consensus 318 d~l~~~~~~ll~~S~~~~i~~lf~~~~ 344 (363)
|.++++++++|++|++++|++||+...
T Consensus 500 D~l~~~~~~ll~~S~~~~i~~lf~~~~ 526 (677)
T cd01387 500 DQVRQDVLDLFVSSRTRVVAHLFSSHA 526 (677)
T ss_pred chhhHHHHHHHHhCCcHHHHHHHhhhh
Confidence 999999999999999999999997643
No 10
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=7.2e-75 Score=605.51 Aligned_cols=280 Identities=35% Similarity=0.590 Sum_probs=255.3
Q ss_pred CChHHHHHHHHHHHHHHHHcCceEEeecC---CCccccCChHHHHHHHHHcCCCHHHHHHHhccceeeecceEEEeccch
Q psy17848 1 MPPPTVRAIFRIVSAVMLFGSMQFKQERN---SDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTK 77 (363)
Q Consensus 1 ~s~~e~~~I~~ilaaILhLGni~f~~~~~---~~~~~i~~~~~~~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~~~~~ 77 (363)
|+++++..||+|||||||||||+|.+..+ .+.+.+.+++.+..||+||||++++|.++|+++++.++++.+++++++
T Consensus 256 ~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~ 335 (692)
T cd01385 256 FLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGNPEVVDLLSQLLKVKRETLMEALTKKRTVTVNETLILPYSL 335 (692)
T ss_pred CCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeCCCeEEecCCH
Confidence 68999999999999999999999987532 456778899999999999999999999999999999999999999999
Q ss_pred hhhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccC--CCceEEEEeecccccccCc-CcHHHHHhhhhhHHHH
Q psy17848 78 EQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKR--QGASFIGILDMAGFEIFEL-NSFEQLCINYTNEKLQ 154 (363)
Q Consensus 78 ~~~~~~~~~a~~~rdalak~LY~~LF~wiv~~iN~~L~~~~~--~~~~~IgiLDi~GFE~~~~-NsfeQlcINyanE~Lq 154 (363)
++ |..+||+|||+||+|||+|||++||++|.+... ....+||||||||||+|+. |||||||||||||+||
T Consensus 336 ~q-------a~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQLcINyaNEkLQ 408 (692)
T cd01385 336 SE-------AITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCINYANEQLQ 408 (692)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHHHhhHHHHHHHH
Confidence 99 999999999999999999999999999986532 2357899999999999998 9999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHhCCcccccccCCChhHHHHhhc-CcchhhhhhhhhccCCCCChHHHHHHHHHhhccccccccc
Q psy17848 155 QLFNHTMFILEQEEYQREGIEWKFIDFGLDLQPTIDLID-KPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKT 233 (363)
Q Consensus 155 ~~f~~~~f~~e~~~Y~~Egi~~~~i~~~~d~~~~ldli~-~p~Gil~lLdee~~~~~~~d~~f~~kl~~~~~~~~~~~~~ 233 (363)
++|++++|..||++|++|||+|..++|. ||++|+|||+ +|.|||++|||||++|+++|++|++|+++.+++
T Consensus 409 ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~-dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~~~~~~------- 480 (692)
T cd01385 409 YYFNQHIFKLEQEEYQGEGITWTNIEYT-DNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFNQQHKD------- 480 (692)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccccCC-CcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhCC-------
Confidence 9999999999999999999999999995 9999999998 578999999999999999999999999876654
Q ss_pred cccCCccceeeeccCCcccccccccccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccch
Q psy17848 234 DFRGVADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWL 313 (363)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~gil~lldee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gfl 313 (363)
|+.|.+++. ....|+|+||||+|+|++.||+
T Consensus 481 ------------------------------------------------~~~~~~~~~-~~~~F~I~HyAG~V~Y~~~gfl 511 (692)
T cd01385 481 ------------------------------------------------NKYYEGPQV-KEPAFIIQHYAGKVKYQIKDFR 511 (692)
T ss_pred ------------------------------------------------CCCccCCCC-CCCeEEEEEecceeeecCCCHH
Confidence 444544432 2457999999999999999999
Q ss_pred hhcCCchhHHHHHHHHhcCcHHHHhhcccch
Q psy17848 314 MKNMDPLNENVVSLLQVSQDPFVAHIWKDAE 344 (363)
Q Consensus 314 ekN~d~l~~~~~~ll~~S~~~~i~~lf~~~~ 344 (363)
+||+|.++++++++|++|++++|+.||+...
T Consensus 512 eKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~ 542 (692)
T cd01385 512 EKNMDLMRQDIVALLKGSDSSYVRELIGMDP 542 (692)
T ss_pred HhccccccHHHHHHHHhCccHHHHHHhccCc
Confidence 9999999999999999999999999997543
No 11
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=2.6e-74 Score=603.31 Aligned_cols=288 Identities=34% Similarity=0.578 Sum_probs=251.3
Q ss_pred CChHHHHHHHHHHHHHHHHcCceEEeecC-CCcccc--CChHHHHHHHHHcCCCHHHHHHHhccceee-----ecceEEE
Q psy17848 1 MPPPTVRAIFRIVSAVMLFGSMQFKQERN-SDQASL--PDNTVAQKIAKLLGLSITEMTKAFLKPRIK-----VGRDFVT 72 (363)
Q Consensus 1 ~s~~e~~~I~~ilaaILhLGni~f~~~~~-~~~~~i--~~~~~~~~~a~LLgv~~~~L~~~l~~~~~~-----~~~~~~~ 72 (363)
|+++|+..||+|||||||||||+|++.+. .+.+.+ .+.+.+..||+||||++++|.++|+++.+. ++++.+.
T Consensus 276 ~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~ 355 (717)
T cd01382 276 LDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKNQSEQSLEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIK 355 (717)
T ss_pred CCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecCCCHHHHHHHHHHcCCCHHHHHHHHhheEEecccccCCCceEE
Confidence 68999999999999999999999987543 233444 356889999999999999999999998877 6678899
Q ss_pred eccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCCceEEEEeecccccccCcCcHHHHHhhhhhHH
Q psy17848 73 KSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEK 152 (363)
Q Consensus 73 ~~~~~~~~~~~~~~a~~~rdalak~LY~~LF~wiv~~iN~~L~~~~~~~~~~IgiLDi~GFE~~~~NsfeQlcINyanE~ 152 (363)
++++++| |...||+|||+||++||+|||.+||.+|.+.. ...+||||||||||+|+.|||||||||||||+
T Consensus 356 ~~l~~~q-------A~~~rdalak~lY~~LF~wiV~~IN~~l~~~~--~~~~IgiLDIfGFE~f~~NsfEQLcINyaNEk 426 (717)
T cd01382 356 VPLKVEQ-------ANNARDALAKAVYSHLFDHVVSRVNQCFPFET--SSNFIGVLDIAGFEYFEHNSFEQFCINYCNEK 426 (717)
T ss_pred ecCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCcEEEEEeccccccCCCCCHHHHhhhhhHHH
Confidence 9999999 99999999999999999999999999997643 35789999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHhCCcccccccCCChhHHHHhhc-CcchhhhhhhhhccCCCCChHHHHHHHHHhhccccccc
Q psy17848 153 LQQLFNHTMFILEQEEYQREGIEWKFIDFGLDLQPTIDLID-KPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFK 231 (363)
Q Consensus 153 Lq~~f~~~~f~~e~~~Y~~Egi~~~~i~~~~d~~~~ldli~-~p~Gil~lLdee~~~~~~~d~~f~~kl~~~~~~~~~~~ 231 (363)
||++|++++|..||++|++|||+|..++|. ||++|+|||+ +|.|||++|||||++|+++|++|++|+++.+++|..+.
T Consensus 427 LQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~-DN~~~ldLie~k~~Gil~lLDee~~~p~~tD~~f~~kl~~~~~~~~~~~ 505 (717)
T cd01382 427 LQQFFNERILKEEQELYQREGLGVNEVHYV-DNQDCIDLIEAKLNGILDILDEENRLPQPSDQHFTSVVHQKHKDHFRLT 505 (717)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcccccc-ccHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhcCCcCcc
Confidence 999999999999999999999999999995 9999999998 67899999999999999999999999998887654321
Q ss_pred cccccCCccceeeeccCCcccccccccccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeecccc
Q psy17848 232 KTDFRGVADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEK 311 (363)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~gil~lldee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~g 311 (363)
. |+.. + ...|+ ....+..|+|+||||+|+|++.|
T Consensus 506 ~-------------------------------~~~~------~----~~~~~-----~~~~~~~F~I~HyAG~V~Y~v~g 539 (717)
T cd01382 506 I-------------------------------PRKS------K----LAVHR-----NLRDDEGFIIRHFAGAVCYETTQ 539 (717)
T ss_pred C-------------------------------CCcc------c----ccccc-----ccCCCCCEEEEecceeEeecCCC
Confidence 0 0000 0 00011 11234579999999999999999
Q ss_pred chhhcCCchhHHHHHHHHhcCcHHHHhhcccch
Q psy17848 312 WLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAE 344 (363)
Q Consensus 312 flekN~d~l~~~~~~ll~~S~~~~i~~lf~~~~ 344 (363)
|++||+|.++.++..+|++|++++|+.||+...
T Consensus 540 fleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~ 572 (717)
T cd01382 540 FVEKNNDALHMSLESLICESKDKFLRSLFESST 572 (717)
T ss_pred hHHhcCccccHHHHHHHHhCchHHHHHHhcccc
Confidence 999999999999999999999999999998654
No 12
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=5.3e-74 Score=600.04 Aligned_cols=281 Identities=48% Similarity=0.833 Sum_probs=257.7
Q ss_pred CChHHHHHHHHHHHHHHHHcCceEEeecCCC-ccccCChHHHHHHHHHcCCCHHHHHHHhccceeeecceEEEeccchhh
Q psy17848 1 MPPPTVRAIFRIVSAVMLFGSMQFKQERNSD-QASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQ 79 (363)
Q Consensus 1 ~s~~e~~~I~~ilaaILhLGni~f~~~~~~~-~~~i~~~~~~~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~~~~~~~ 79 (363)
|+++|+..||+|||||||||||+|...++.+ ...+.+.+.++.||+||||+.++|.++|+++++.++++.+++++++++
T Consensus 254 ~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~ 333 (677)
T smart00242 254 FSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVKDKEELENAAELLGVDPEELEKALTKRKIKTGGEVITKPLNVEQ 333 (677)
T ss_pred CCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceEEecCCHHH
Confidence 6899999999999999999999998765433 234778899999999999999999999999999999999999999999
Q ss_pred hccChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCCceEEEEeecccccccCcCcHHHHHhhhhhHHHHHHHHH
Q psy17848 80 WFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNH 159 (363)
Q Consensus 80 ~~~~~~~a~~~rdalak~LY~~LF~wiv~~iN~~L~~~~~~~~~~IgiLDi~GFE~~~~NsfeQlcINyanE~Lq~~f~~ 159 (363)
|...||+|||+||+|||+|||.+||++|.+.. ....+||||||||||+|+.|||||||||||||+||++|++
T Consensus 334 -------a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~-~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkLq~~f~~ 405 (677)
T smart00242 334 -------ALDARDALAKALYSRLFDWLVKRINKSLSFKD-GSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKLQQFFNQ 405 (677)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCceEEEEEecccccccccCCHHHHHhHhhHHHHHHHHHH
Confidence 99999999999999999999999999998753 4568899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhCCcccccccCCChhHHHHhhc-CcchhhhhhhhhccCCCCChHHHHHHHHHhhccccccccccccCC
Q psy17848 160 TMFILEQEEYQREGIEWKFIDFGLDLQPTIDLID-KPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGV 238 (363)
Q Consensus 160 ~~f~~e~~~Y~~Egi~~~~i~~~~d~~~~ldli~-~p~Gil~lLdee~~~~~~~d~~f~~kl~~~~~~~~~~~~~~~~~~ 238 (363)
++|..||++|++|||+|..++|. ||++|+|||+ +|.|||++|||||++|+++|++|++|+++.+++
T Consensus 406 ~~f~~eq~~y~~EgI~~~~i~~~-dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~~~~~~------------ 472 (677)
T smart00242 406 HVFKLEQEEYEREGIDWTFIDFF-DNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLNQTHEK------------ 472 (677)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCC-CcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhcC------------
Confidence 99999999999999999999996 9999999998 568999999999999999999999999876654
Q ss_pred ccceeeeccCCcccccccccccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccchhhcCC
Q psy17848 239 ADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLMKNMD 318 (363)
Q Consensus 239 ~~~~~~~~~~~~~gil~lldee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gflekN~d 318 (363)
|+.|.+++...+..|+|+||||+|+|+++||++||+|
T Consensus 473 -------------------------------------------~~~~~~~~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D 509 (677)
T smart00242 473 -------------------------------------------HPHFSKPRKKGRTEFIIKHYAGDVTYDVTGFLEKNKD 509 (677)
T ss_pred -------------------------------------------CCCccCCCCCCCCeEEEEecceeEeecCccHHHHccc
Confidence 4556555445566899999999999999999999999
Q ss_pred chhHHHHHHHHhcCcHHHHhhcccchh
Q psy17848 319 PLNENVVSLLQVSQDPFVAHIWKDAEI 345 (363)
Q Consensus 319 ~l~~~~~~ll~~S~~~~i~~lf~~~~~ 345 (363)
.++.+++++|+.|++++|+.||+....
T Consensus 510 ~l~~~~~~ll~~S~n~~i~~lf~~~~~ 536 (677)
T smart00242 510 TLFKDLIELLQSSKNPLIASLFPSGES 536 (677)
T ss_pred hhhHHHHHHHHhCCcHHHHHHhccccc
Confidence 999999999999999999999987653
No 13
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=7e-73 Score=592.76 Aligned_cols=280 Identities=46% Similarity=0.763 Sum_probs=256.9
Q ss_pred CChHHHHHHHHHHHHHHHHcCceEEeecCCC--ccccCChHHHHHHHHHcCCCHHHHHHHhccceeeecceEEEeccchh
Q psy17848 1 MPPPTVRAIFRIVSAVMLFGSMQFKQERNSD--QASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKE 78 (363)
Q Consensus 1 ~s~~e~~~I~~ilaaILhLGni~f~~~~~~~--~~~i~~~~~~~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~~~~~~ 78 (363)
|+++++..||+|||||||||||+|...++.+ .+.+.+.+.++.+|+||||+.++|.++|+++++.++++.++++++++
T Consensus 246 ~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~~~~~~ 325 (679)
T cd00124 246 FSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVKNTEVLSKAAELLGLDPEELEEALTYKVTKVGGEVITIPLTKE 325 (679)
T ss_pred CCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecCCHHHHHHHHHHhCCCHHHHHHHhhccEEEeCCceEEecCCHH
Confidence 6899999999999999999999998765543 36778899999999999999999999999999999999999999999
Q ss_pred hhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCCceEEEEeecccccccCcCcHHHHHhhhhhHHHHHHHH
Q psy17848 79 QWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFN 158 (363)
Q Consensus 79 ~~~~~~~~a~~~rdalak~LY~~LF~wiv~~iN~~L~~~~~~~~~~IgiLDi~GFE~~~~NsfeQlcINyanE~Lq~~f~ 158 (363)
+ |...||+|||+||+|||+|||.+||.+|.+. .....+||||||||||+|+.|||||||||||||+||++|+
T Consensus 326 ~-------a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq~~f~ 397 (679)
T cd00124 326 E-------AVDSRDSLAKALYSRLFDWIVSRINSSLKPK-DGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQQFFN 397 (679)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCceeeEEeccccccCCCCCHHHHhcccchHHHHHHHH
Confidence 9 9999999999999999999999999999875 3345789999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHhCCcccccccCCChhHHHHhhcC-cchhhhhhhhhccCCCCChHHHHHHHHHhhccccccccccccC
Q psy17848 159 HTMFILEQEEYQREGIEWKFIDFGLDLQPTIDLIDK-PMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRG 237 (363)
Q Consensus 159 ~~~f~~e~~~Y~~Egi~~~~i~~~~d~~~~ldli~~-p~Gil~lLdee~~~~~~~d~~f~~kl~~~~~~~~~~~~~~~~~ 237 (363)
+++|+.||++|.+|||+|..++|. ||++|+|||++ |.|||++|||||++|+++|++|++++++.+++
T Consensus 398 ~~~f~~eq~~y~~EgI~~~~i~~~-dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~~~~~~----------- 465 (679)
T cd00124 398 QHVFKLEQEEYQEEGIDWESIDFT-DNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKLKS----------- 465 (679)
T ss_pred HHHHHHHHHHHHhcCCCccCCcCC-CCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHhcC-----------
Confidence 999999999999999999999996 99999999996 88999999999999999999999999887765
Q ss_pred CccceeeeccCCcccccccccccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccchhhcC
Q psy17848 238 VADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLMKNM 317 (363)
Q Consensus 238 ~~~~~~~~~~~~~~gil~lldee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gflekN~ 317 (363)
|++|..++...+..|+|+||||+|+|++.||++||+
T Consensus 466 --------------------------------------------~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~ 501 (679)
T cd00124 466 --------------------------------------------NNAFYPAKKNAPTEFTIKHYAGDVTYDARGFLEKNK 501 (679)
T ss_pred --------------------------------------------CcccccCCCCCCCceEEEeeceeEEecCCCHHHhcC
Confidence 333332333345689999999999999999999999
Q ss_pred CchhHHHHHHHHhcCcHHHHhhcccch
Q psy17848 318 DPLNENVVSLLQVSQDPFVAHIWKDAE 344 (363)
Q Consensus 318 d~l~~~~~~ll~~S~~~~i~~lf~~~~ 344 (363)
|.++.+++++|+.|++++|+.||+...
T Consensus 502 D~l~~~~~~ll~~S~~~~i~~lf~~~~ 528 (679)
T cd00124 502 DVLSPELVSLLKSSSNPFIRELFESEL 528 (679)
T ss_pred CcccHHHHHHHHhCCcHHHHHHhcccc
Confidence 999999999999999999999998743
No 14
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=1.9e-72 Score=583.40 Aligned_cols=275 Identities=36% Similarity=0.607 Sum_probs=246.1
Q ss_pred CChHHHHHHHHHHHHHHHHcCceEEeecC---CCccccCChHHHHHHHHHcCCCHHHHHHHhccceeeecceEEEeccch
Q psy17848 1 MPPPTVRAIFRIVSAVMLFGSMQFKQERN---SDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTK 77 (363)
Q Consensus 1 ~s~~e~~~I~~ilaaILhLGni~f~~~~~---~~~~~i~~~~~~~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~~~~~ 77 (363)
|+++|+..||+|||||||||||+|++.+. .+.+.+.+.+.++.||+||||+.++|.++|+++++.++++.+++++++
T Consensus 251 ~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~~~~l~~~A~LLgv~~~~L~~~L~~~~~~~~ge~i~~~~~~ 330 (653)
T cd01379 251 FTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSNVAALENAASLLCIRSDELQEALTSHCVVTRGETIVRHNTV 330 (653)
T ss_pred CCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceeeecCCH
Confidence 68999999999999999999999987542 345778899999999999999999999999999999999999999999
Q ss_pred hhhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccC----CCceEEEEeecccccccCcCcHHHHHhhhhhHHH
Q psy17848 78 EQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKR----QGASFIGILDMAGFEIFELNSFEQLCINYTNEKL 153 (363)
Q Consensus 78 ~~~~~~~~~a~~~rdalak~LY~~LF~wiv~~iN~~L~~~~~----~~~~~IgiLDi~GFE~~~~NsfeQlcINyanE~L 153 (363)
++ |..+||+|||+||+|||+|||.+||.+|.++.. ....+||||||||||+|+.|||||||||||||||
T Consensus 331 ~q-------A~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkL 403 (653)
T cd01379 331 EK-------ATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQLCINIANEQI 403 (653)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHHHHhhhhHHHH
Confidence 99 999999999999999999999999999987543 1346899999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHhCCcccccccCCChhHHHHhhc-CcchhhhhhhhhccCCCCChHHHHHHHHHhhcccccccc
Q psy17848 154 QQLFNHTMFILEQEEYQREGIEWKFIDFGLDLQPTIDLID-KPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKK 232 (363)
Q Consensus 154 q~~f~~~~f~~e~~~Y~~Egi~~~~i~~~~d~~~~ldli~-~p~Gil~lLdee~~~~~~~d~~f~~kl~~~~~~~~~~~~ 232 (363)
|++|++++|..||++|++|||+|..++|. ||++|+|||+ +|.|||++|||||++|+++|++|++|++..++.
T Consensus 404 Q~~f~~~vf~~Eq~eY~~EgI~~~~i~~~-dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~~~~~~------ 476 (653)
T cd01379 404 QYYFNQHIFAWEQQEYLNEGVDARLVEYE-DNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFEDNLKS------ 476 (653)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCC-CcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHHHhcCC------
Confidence 99999999999999999999999999995 9999999996 789999999999999999999999999765432
Q ss_pred ccccCCccceeeeccCCcccccccccccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccc
Q psy17848 233 TDFRGVADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKW 312 (363)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~gil~lldee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gf 312 (363)
+.|.+++. .+..|+|+||||+|+|++.||
T Consensus 477 --------------------------------------------------~~~~~~~~-~~~~F~I~HyAG~V~Y~~~gf 505 (653)
T cd01379 477 --------------------------------------------------KFFWRPKR-VELSFGIHHYAGKVLYNASGF 505 (653)
T ss_pred --------------------------------------------------CCccCCCC-CCCceEEEEeceeEeecCCCH
Confidence 22333332 245799999999999999999
Q ss_pred hhhcCCchhHHHHHHHHhcCcHHHHhhccc
Q psy17848 313 LMKNMDPLNENVVSLLQVSQDPFVAHIWKD 342 (363)
Q Consensus 313 lekN~d~l~~~~~~ll~~S~~~~i~~lf~~ 342 (363)
++||+|.++.+++++|++| ..|...|..
T Consensus 506 leKNkD~l~~~~~~ll~~S--~tv~~~fr~ 533 (653)
T cd01379 506 LEKNRDFLPADIVLLLRSS--QTVASYFRY 533 (653)
T ss_pred HHhccccccHHHHHHHHhC--cHHHHHHHH
Confidence 9999999999999999999 344544543
No 15
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=2.5e-72 Score=592.61 Aligned_cols=283 Identities=46% Similarity=0.801 Sum_probs=246.3
Q ss_pred CChHHHHHHHHHHHHHHHHcCceEEeecCCCccccCChHHHHHHHHHcCCCHHHHHHHhccceeeecceEEEeccchhhh
Q psy17848 1 MPPPTVRAIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQW 80 (363)
Q Consensus 1 ~s~~e~~~I~~ilaaILhLGni~f~~~~~~~~~~i~~~~~~~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (363)
|+++++..||+|||||||||||+|++..+.+.+.+.+.+.++.||+||||++++|.++|+.+++.++++.+++++++++
T Consensus 249 ~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~- 327 (689)
T PF00063_consen 249 FSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENSEELQKAAELLGVDSEELEKALTTRTIKVGGETVTKPLSVEQ- 327 (689)
T ss_dssp --HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTSHHHHHHHHHTTS-HHHHHHHHHSEEEESTTSEEEEE-BHHH-
T ss_pred CchhHHHHHHHHHHHHhhhccccccccccccceeechHHHHHHhhhhcCCCHHHHHHHHhhccccccccccccccchhh-
Confidence 5789999999999999999999999988666788889999999999999999999999999999999999999999999
Q ss_pred ccChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCCceEEEEeecccccccCcCcHHHHHhhhhhHHHHHHHHHh
Q psy17848 81 FKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHT 160 (363)
Q Consensus 81 ~~~~~~a~~~rdalak~LY~~LF~wiv~~iN~~L~~~~~~~~~~IgiLDi~GFE~~~~NsfeQlcINyanE~Lq~~f~~~ 160 (363)
|..+||+|||+||++||+|||++||.+|++.......+||||||||||+|..|+||||||||||||||++|+++
T Consensus 328 ------a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~~f~~~ 401 (689)
T PF00063_consen 328 ------ASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQFFNQH 401 (689)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHHHH
T ss_pred ------hhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCccccccccccccccceeeeccccccceeeee
Confidence 99999999999999999999999999999876556789999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhCCcccccccCCChhHHHHhhcC-cchhhhhhhhhccCCCCChHHHHHHHHHhh-ccccccccccccCC
Q psy17848 161 MFILEQEEYQREGIEWKFIDFGLDLQPTIDLIDK-PMGIMALLDEECWFPKATDRSFVEKLVQSH-SQHAKFKKTDFRGV 238 (363)
Q Consensus 161 ~f~~e~~~Y~~Egi~~~~i~~~~d~~~~ldli~~-p~Gil~lLdee~~~~~~~d~~f~~kl~~~~-~~~~~~~~~~~~~~ 238 (363)
+|..|+++|++|||+|..++|..||++|+|||++ |.|||++|||||++|+++|++|++++...+ +.
T Consensus 402 ~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~~~~~~~------------ 469 (689)
T PF00063_consen 402 IFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLLKRHSGK------------ 469 (689)
T ss_dssp HHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHHHHHTTT------------
T ss_pred cccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHHhhcccC------------
Confidence 9999999999999999999994499999999996 899999999999999999999999998877 43
Q ss_pred ccceeeeccCCcccccccccccccCCCCCchHHHHHHHhhccCCCCCcccC---CCCCccceeeeeccceeeccccchhh
Q psy17848 239 ADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTD---FRGVADFAIVHYAGKVDYSAEKWLMK 315 (363)
Q Consensus 239 ~~~~~~~~~~~~~gil~lldee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~---~~~~~~F~I~H~aG~V~Y~~~gflek 315 (363)
|+.|.+++ ...+..|+|+||||+|+|++.||++|
T Consensus 470 -------------------------------------------~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~v~gfleK 506 (689)
T PF00063_consen 470 -------------------------------------------HPSFVKPRFSRSTSKSSFTIKHYAGDVTYDVEGFLEK 506 (689)
T ss_dssp -------------------------------------------STTEECTSSSTSSTTSCEEEEETTEEEEEE-TTHHHH
T ss_pred -------------------------------------------CCcccccccccccCCCceEeecccCcceecccccccc
Confidence 33443332 23456899999999999999999999
Q ss_pred cCCchhHHHHHHHHhcCcHHHHhhcccchh
Q psy17848 316 NMDPLNENVVSLLQVSQDPFVAHIWKDAEI 345 (363)
Q Consensus 316 N~d~l~~~~~~ll~~S~~~~i~~lf~~~~~ 345 (363)
|+|.++.+++.+|+.|++++|+.||+....
T Consensus 507 NrD~l~~~~~~ll~~S~n~~v~~lf~~~~~ 536 (689)
T PF00063_consen 507 NRDPLSQDFVSLLRSSTNSFVSSLFSSEAT 536 (689)
T ss_dssp HHE-S-HHHHHHHHTSSSHHHHHHTHSHHH
T ss_pred ccchHHHHHHHHHHhCcCcccccccccccc
Confidence 999999999999999999999999988865
No 16
>KOG0164|consensus
Probab=100.00 E-value=1.4e-72 Score=559.38 Aligned_cols=301 Identities=39% Similarity=0.692 Sum_probs=263.4
Q ss_pred CChHHHHHHHHHHHHHHHHcCceEEeecCCCccccCChHHHHHHHHHcCCCHHHHHHHhccceeeecceEEEeccchhhh
Q psy17848 1 MPPPTVRAIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQW 80 (363)
Q Consensus 1 ~s~~e~~~I~~ilaaILhLGni~f~~~~~~~~~~i~~~~~~~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (363)
||++|+..+|+|+|||||||||+|.+..+ ...+.+...++.+|+||++++++|.++|+.+++..+++.+.+++++.|
T Consensus 258 Fs~eEVe~v~~iiAavLhLGNv~f~~~ed--~~~~~~~~~l~~~aell~v~~del~~aL~~Rtvaa~~e~v~k~hn~~q- 334 (1001)
T KOG0164|consen 258 FSEEEVESVLSIIAAVLHLGNVEFADNED--SSGIVNGAQLKYIAELLSVTGDELERALTSRTVAAGGEIVLKQHNVEQ- 334 (1001)
T ss_pred CCHHHHHHHHHHHHHHHhccceEEeecCc--ccccchhHHHHHHHHHHcCCHHHHHHHHHHHHHHhccchhhccccHHH-
Confidence 79999999999999999999999987654 344456688999999999999999999999999999999999999999
Q ss_pred ccChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCccc----CCCceEEEEeecccccccCcCcHHHHHhhhhhHHHHHH
Q psy17848 81 FKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTK----RQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQL 156 (363)
Q Consensus 81 ~~~~~~a~~~rdalak~LY~~LF~wiv~~iN~~L~~~~----~~~~~~IgiLDi~GFE~~~~NsfeQlcINyanE~Lq~~ 156 (363)
|.++||||||++|+|||.|||.+||+.+.... ..+.+.||+|||||||+|+.|||||||||||||+||+.
T Consensus 335 ------A~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcINYCNEKLQQl 408 (1001)
T KOG0164|consen 335 ------ASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCINYCNEKLQQL 408 (1001)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997642 22347899999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHhCCcccccccCCChhHHHHhhcCc-chhhhhhhhhccCCC-CChHHHHHHHHHhhcccccccccc
Q psy17848 157 FNHTMFILEQEEYQREGIEWKFIDFGLDLQPTIDLIDKP-MGIMALLDEECWFPK-ATDRSFVEKLVQSHSQHAKFKKTD 234 (363)
Q Consensus 157 f~~~~f~~e~~~Y~~Egi~~~~i~~~~d~~~~ldli~~p-~Gil~lLdee~~~~~-~~d~~f~~kl~~~~~~~~~~~~~~ 234 (363)
|++.+++.|||||++|||+|..++|. +|.-++||+|.| .||++||||||..|+ .||.+|+++|.+..+.|.+|....
T Consensus 409 FIel~LKqEQEEY~rEgI~W~~i~YF-nN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~~~~H~Hy~sr~ 487 (1001)
T KOG0164|consen 409 FIELVLKQEQEEYEREGIEWTHIDYF-NNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQKLKKHPHYTSRK 487 (1001)
T ss_pred HHHHHHHhhHHHHHhcCCCceehhhc-CCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHHhhhCCcchhhh
Confidence 99999999999999999999999995 999999999977 499999999999885 789999999888877776653210
Q ss_pred ccCCccceeeeccCCcccccccccccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccchh
Q psy17848 235 FRGVADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLM 314 (363)
Q Consensus 235 ~~~~~~~~~~~~~~~~~gil~lldee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gfle 314 (363)
.+.+| +.-+-.+|.|.||||.|+|++.||++
T Consensus 488 -----------------------------~~~~d--------------------ksl~~~~Fri~HYAG~V~YsV~gFid 518 (1001)
T KOG0164|consen 488 -----------------------------LKQTD--------------------KSLGFSDFRITHYAGDVTYSVEGFID 518 (1001)
T ss_pred -----------------------------ccccc--------------------cccCccceeEEEeccceEEEEEeeec
Confidence 00011 11223579999999999999999999
Q ss_pred hcCCchhHHHHHHHHhcCcHHHHhhcccch--hhhc-cccccccccccc
Q psy17848 315 KNMDPLNENVVSLLQVSQDPFVAHIWKDAE--IVGM-AQQAMSDTQFGA 360 (363)
Q Consensus 315 kN~d~l~~~~~~ll~~S~~~~i~~lf~~~~--~~~~-~~~~~~~~~~~~ 360 (363)
||+|.|..|+..+|.+|++|++++||+++. +... +.|.+..++|+.
T Consensus 519 KN~D~Lf~dlk~~m~~s~~~~l~~~fpeG~~~~~~~tkRP~Tagt~Fk~ 567 (1001)
T KOG0164|consen 519 KNNDLLFQDLKRLMYNSKNPLLKSLFPEGNPDIAEVTKRPPTAGTLFKN 567 (1001)
T ss_pred cCccHHHHHHHHHHHhcCCchHHHhCCCCChhHHhhhcCCCcHHHHHHH
Confidence 999999999999999999999999999766 4444 777777777754
No 17
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=2e-69 Score=568.13 Aligned_cols=278 Identities=28% Similarity=0.446 Sum_probs=227.9
Q ss_pred CChHHHHHHHHHHHHHHHHcCceEEeecCCCccccCChHHHHHHHHHcCCCHHHHHHHhccceeeecceEEE--------
Q psy17848 1 MPPPTVRAIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVT-------- 72 (363)
Q Consensus 1 ~s~~e~~~I~~ilaaILhLGni~f~~~~~~~~~~i~~~~~~~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~-------- 72 (363)
|+++|+..||+|||||||||||+|... .+.+.+.+++.++.||+||||+.++|.++|++++++.+...++
T Consensus 248 fs~~e~~~If~iLaaILhLGNi~f~~~--~~~~~~~~~~~~~~vA~LLgv~~~~L~~al~~~~~~~~~~~~~~~~~~~~~ 325 (767)
T cd01386 248 ISEGEQRAIWRVLAAIYHLGAAGATKV--AGRKQFARPEWAQKAAELLGCPLEELSSATFKHTLRGGINQMTTGPQRPGL 325 (767)
T ss_pred CCHHHHHHHHHHHHHHHhccCceeeec--CCccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEeecceeeecccccccc
Confidence 689999999999999999999999862 2346677888999999999999999999998887765543222
Q ss_pred -----eccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCCceEEEEeecccccccCc------CcH
Q psy17848 73 -----KSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIGILDMAGFEIFEL------NSF 141 (363)
Q Consensus 73 -----~~~~~~~~~~~~~~a~~~rdalak~LY~~LF~wiv~~iN~~L~~~~~~~~~~IgiLDi~GFE~~~~------Nsf 141 (363)
.+.++.+ |.++||+|||+||+|||+|||.+||.+|.+... ...+||||||||||+|+. |||
T Consensus 326 ~~~~~~~~~~~~-------A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~-~~~~IgiLDIfGFE~f~~n~~~~~Nsf 397 (767)
T cd01386 326 SDTETSSGLKMT-------AVECLEGMASGLYSELFAAVVSLINRSISSSHH-SIASIMLVDTPGFQNPASQGKDRAATF 397 (767)
T ss_pred ccccccCCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CCcEEEEEecccccccccccccCCCCH
Confidence 2345666 999999999999999999999999999987543 346899999999999984 899
Q ss_pred HHHHhhhhhHHHHHHHHHhhhHHHHHHHHHhCCcccccccCCChhHHHHhhcCcc---------------hhhhhhhhhc
Q psy17848 142 EQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFIDFGLDLQPTIDLIDKPM---------------GIMALLDEEC 206 (363)
Q Consensus 142 eQlcINyanE~Lq~~f~~~~f~~e~~~Y~~Egi~~~~i~~~~d~~~~ldli~~p~---------------Gil~lLdee~ 206 (363)
||||||||||+||++|++++|+.||++|.+|||+|..+.+..||++|++||++++ |||++|||||
T Consensus 398 EQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lLDEec 477 (767)
T cd01386 398 EELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLLDEEA 477 (767)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhhhHhh
Confidence 9999999999999999999999999999999999987666568999999999632 5555555555
Q ss_pred cCCCCChHHHHHHHHHhhccccccccccccCCccceeeeccCCcccccccccccccCCCCCchHHHHHHHhhccCCCCCc
Q psy17848 207 WFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFK 286 (363)
Q Consensus 207 ~~~~~~d~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gil~lldee~~~p~~~d~~fl~~l~~~~~~~~~~~ 286 (363)
++|+++|++|++||++.++ .|++|.
T Consensus 478 ~~p~~tD~~f~~kl~~~~~-------------------------------------------------------~~~~~~ 502 (767)
T cd01386 478 LVPGSSDDTFLERLFAAYG-------------------------------------------------------DRETRE 502 (767)
T ss_pred cCCCCcHHHHHHHHHHHhc-------------------------------------------------------cCCCcc
Confidence 5555555555555555443 344443
Q ss_pred cc-----CCCCCccceeeeeccc--eeeccccchhhcCCch-hHHHHHHHHhcCcHHHHhhcccc
Q psy17848 287 KT-----DFRGVADFAIVHYAGK--VDYSAEKWLMKNMDPL-NENVVSLLQVSQDPFVAHIWKDA 343 (363)
Q Consensus 287 ~~-----~~~~~~~F~I~H~aG~--V~Y~~~gflekN~d~l-~~~~~~ll~~S~~~~i~~lf~~~ 343 (363)
+. ....+..|+|+||||. |+|++.||++||+|.+ ..+++.+|++|++++|+.||++.
T Consensus 503 ~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNkD~~~~~~~~~ll~~S~~~~i~~lF~~~ 567 (767)
T cd01386 503 TGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKPNPAALNAPQLLQDSKREEINSLFQGR 567 (767)
T ss_pred cCccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcCCCCChHHHHHHHHhCCcHHHHHHHhcc
Confidence 31 1122457999999994 9999999999999965 68999999999999999999653
No 18
>KOG0162|consensus
Probab=100.00 E-value=9.4e-70 Score=539.53 Aligned_cols=283 Identities=34% Similarity=0.618 Sum_probs=253.7
Q ss_pred CChHHHHHHHHHHHHHHHHcCceEEeecCCCccccCChHHHHHHHHHcCCCHHHHHHHhccceeee----cceEEEeccc
Q psy17848 1 MPPPTVRAIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKV----GRDFVTKSQT 76 (363)
Q Consensus 1 ~s~~e~~~I~~ilaaILhLGni~f~~~~~~~~~~i~~~~~~~~~a~LLgv~~~~L~~~l~~~~~~~----~~~~~~~~~~ 76 (363)
+.++||+.|||+||+|||||||.|.++++ -+.|.+.+.++-.|.||||++..|.+.|+.|.+.. .++.+..+++
T Consensus 266 i~~~eQ~~v~rmva~IL~lGNIsF~Ee~~--~a~V~~~~~~~f~ayLlgi~s~~l~~~Lt~R~M~s~~G~kr~~~~v~LN 343 (1106)
T KOG0162|consen 266 INQEEQDEVLRMVAGILHLGNISFIEEGN--YAAVSDKSVLEFPAYLLGIDSARLEEKLTSRIMESKWGGKREVIHVPLN 343 (1106)
T ss_pred CChHHHHHHHHHHHHHHhccceeEEeeCC--cceeccchHHHhHHHHhcCCHHHHHHHHHHHHHhhcccccceeEEeccc
Confidence 35789999999999999999999998543 56778999999999999999999999999877643 3578889999
Q ss_pred hhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCCceEEEEeecccccccCcCcHHHHHhhhhhHHHHHH
Q psy17848 77 KEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQL 156 (363)
Q Consensus 77 ~~~~~~~~~~a~~~rdalak~LY~~LF~wiv~~iN~~L~~~~~~~~~~IgiLDi~GFE~~~~NsfeQlcINyanE~Lq~~ 156 (363)
++| |.+.||||||+||.|||+|||++||.++...+.+...+||||||||||+|+.|||||+||||.||+||+.
T Consensus 344 v~Q-------A~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CINfVNEKLQQI 416 (1106)
T KOG0162|consen 344 VEQ-------ASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCINFVNEKLQQI 416 (1106)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHHHHHHHHHHH
Confidence 999 9999999999999999999999999999866555678999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHhCCcccccccCCChhHHHHhhc--CcchhhhhhhhhccCCCCChHHHHHHHHHhhcccccccccc
Q psy17848 157 FNHTMFILEQEEYQREGIEWKFIDFGLDLQPTIDLID--KPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTD 234 (363)
Q Consensus 157 f~~~~f~~e~~~Y~~Egi~~~~i~~~~d~~~~ldli~--~p~Gil~lLdee~~~~~~~d~~f~~kl~~~~~~~~~~~~~~ 234 (363)
|++.+++.|||+|.+|||.|.+|+|. ||..++|||| .|+||+++|||.|... |..
T Consensus 417 FIeLTLKaEQEeYvrE~I~WTpIkYF-nNKvVCDLIE~K~PPGims~ldD~~At~--------------Ha~-------- 473 (1106)
T KOG0162|consen 417 FIELTLKAEQEEYVREGIKWTPIKYF-NNKVVCDLIENKRPPGIMSALDDVCATA--------------HAD-------- 473 (1106)
T ss_pred HHHHhhhhhHHHHHHhcccccchhhc-CCeeeeehhhccCCchHHHHHHHHHHHh--------------ccc--------
Confidence 99999999999999999999999994 9999999998 5899999999987321 221
Q ss_pred ccCCccceeeeccCCcccccccccccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccchh
Q psy17848 235 FRGVADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLM 314 (363)
Q Consensus 235 ~~~~~~~~~~~~~~~~~gil~lldee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gfle 314 (363)
..+.|++|+++|....+.||+|... ...|.|+||||.|+|+++||.+
T Consensus 474 -----------------------------~~~aDqa~~qrLn~~~~s~phF~~~----s~~FvIkHYAGdVtYdi~G~~d 520 (1106)
T KOG0162|consen 474 -----------------------------SEGADQALLQRLNKLFGSHPHFESR----SNGFVIKHYAGDVTYDIDGFCD 520 (1106)
T ss_pred -----------------------------cchhHHHHHHHHHHHhcCCCccccc----cCceEEEEeccceeeecccccc
Confidence 1356788888888888889999853 3479999999999999999999
Q ss_pred hcCCchhHHHHHHHHhcCcHHHHhhcccchhhhc
Q psy17848 315 KNMDPLNENVVSLLQVSQDPFVAHIWKDAEIVGM 348 (363)
Q Consensus 315 kN~d~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~ 348 (363)
||+|.|..|+++||++|+++|++.||++....+.
T Consensus 521 rNrD~L~~DlieLm~ts~~~Fl~slFPe~v~~ds 554 (1106)
T KOG0162|consen 521 RNRDVLFKDLIELMQTSENPFLKSLFPENVDADS 554 (1106)
T ss_pred cchhHHHHHHHHHHhccchHHHHHhCchhhcccc
Confidence 9999999999999999999999999999875544
No 19
>KOG0161|consensus
Probab=100.00 E-value=9e-67 Score=575.17 Aligned_cols=280 Identities=62% Similarity=1.034 Sum_probs=264.9
Q ss_pred CChHHHHHHHHHHHHHHHHcCceEEeecCCCccccCChHHHHHHHHHcCCCHHHHHHHhccceeeecceEEEeccchhhh
Q psy17848 1 MPPPTVRAIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQW 80 (363)
Q Consensus 1 ~s~~e~~~I~~ilaaILhLGni~f~~~~~~~~~~i~~~~~~~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (363)
|+++|+.+||+|+||||||||+.|......+++.+++.+++..+|+||||+.+++.++++++++++|++.|.+..+.+|
T Consensus 334 fs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~~~~a~ka~~llg~~~~~~~~al~~priKvg~e~v~k~q~~~q- 412 (1930)
T KOG0161|consen 334 FSEEEKISIFRIVSAILHLGNIKFKQEPREEQAEFDNTEVADKACHLLGINVEEFLKALLRPRIKVGREWVSKAQNVEQ- 412 (1930)
T ss_pred CCHHHHHHHHHHHHHHHHhcchhhhccccccccCCCCchHHHHHHHHcCCCHHHHHHHhcccceeccchhhhhcchHHH-
Confidence 7899999999999999999999999887788899999999999999999999999999999999999999999999999
Q ss_pred ccChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCCceEEEEeecccccccCcCcHHHHHhhhhhHHHHHHHHHh
Q psy17848 81 FKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHT 160 (363)
Q Consensus 81 ~~~~~~a~~~rdalak~LY~~LF~wiv~~iN~~L~~~~~~~~~~IgiLDi~GFE~~~~NsfeQlcINyanE~Lq~~f~~~ 160 (363)
+..+..+|||++|+|+|.|+|.+||.+|... .+..+|||||||+|||+|+.||||||||||+||+||++|+++
T Consensus 413 ------~~~~v~alAk~lYerlF~wlV~riN~sld~~-~~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~ 485 (1930)
T KOG0161|consen 413 ------VLFAVEALAKALYERLFGWLVKRINKSLDSK-QQRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHH 485 (1930)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcch
Confidence 9999999999999999999999999999976 566789999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhCCcccccccCCChhHHHHhhcCcchhhhhhhhhccCCCCChHHHHHHHHHhhccccccccccccCCcc
Q psy17848 161 MFILEQEEYQREGIEWKFIDFGLDLQPTIDLIDKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVAD 240 (363)
Q Consensus 161 ~f~~e~~~Y~~Egi~~~~i~~~~d~~~~ldli~~p~Gil~lLdee~~~~~~~d~~f~~kl~~~~~~~~~~~~~~~~~~~~ 240 (363)
||..||++|.+|||.|..|+|+.|.+||+|||++|.||+++||+||.+|++||.+|++||+..|.+
T Consensus 486 mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEkp~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~g-------------- 551 (1930)
T KOG0161|consen 486 MFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEKPMGILSLLDEECVVPKATDKTFLEKLCDQHLG-------------- 551 (1930)
T ss_pred hhhhhHHHHHHhCCceeeeccccchhhhHHHHhchhhHHHHHHHHHhcCCCccchHHHHHHHHhhc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999887732
Q ss_pred ceeeeccCCcccccccccccccCCCCCchHHHHHHHhhccCCCCCcccC-CCCCccceeeeeccceeeccccchhhcCCc
Q psy17848 241 FAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTD-FRGVADFAIVHYAGKVDYSAEKWLMKNMDP 319 (363)
Q Consensus 241 ~~~~~~~~~~~gil~lldee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~-~~~~~~F~I~H~aG~V~Y~~~gflekN~d~ 319 (363)
.||.|.+|+ ...+..|.|.||||+|.|++.||++||+|+
T Consensus 552 ----------------------------------------k~~~f~~~k~~~~~~~F~l~HyaG~V~Y~~~~WL~Knkdp 591 (1930)
T KOG0161|consen 552 ----------------------------------------KHPKFQKPKGKKAEAHFALVHYAGTVDYNVDGWLEKNKDP 591 (1930)
T ss_pred ----------------------------------------cCccccCcccccchhhhheeeecceeccCccchhhcCCCC
Confidence 266676652 334568999999999999999999999999
Q ss_pred hhHHHHHHHHhcCcHHHHhhccc
Q psy17848 320 LNENVVSLLQVSQDPFVAHIWKD 342 (363)
Q Consensus 320 l~~~~~~ll~~S~~~~i~~lf~~ 342 (363)
+...++.+|+.|++++|+.||++
T Consensus 592 ln~~v~~ll~~s~~~~v~~l~~~ 614 (1930)
T KOG0161|consen 592 LNDNVVSLLKQSTNKLVSSLFQD 614 (1930)
T ss_pred chHHHHHHHHhcccHHHHHHhhh
Confidence 99999999999999999999999
No 20
>KOG0163|consensus
Probab=100.00 E-value=6e-66 Score=513.21 Aligned_cols=307 Identities=33% Similarity=0.581 Sum_probs=263.4
Q ss_pred CChHHHHHHHHHHHHHHHHcCceEEeecC--CCccccCC--hHHHHHHHHHcCCCHHHHHHHhccceeee-----cceEE
Q psy17848 1 MPPPTVRAIFRIVSAVMLFGSMQFKQERN--SDQASLPD--NTVAQKIAKLLGLSITEMTKAFLKPRIKV-----GRDFV 71 (363)
Q Consensus 1 ~s~~e~~~I~~ilaaILhLGni~f~~~~~--~~~~~i~~--~~~~~~~a~LLgv~~~~L~~~l~~~~~~~-----~~~~~ 71 (363)
+|++|...||+++|||||||||+|++..+ ...|.+.+ ++.+..+|+|||+++++|...|+.+.+.. .+..+
T Consensus 329 lsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n~seqsL~~~a~LLGld~~elr~~L~aRvMqtt~GG~kGTvI 408 (1259)
T KOG0163|consen 329 LSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSNGSEQSLTIAAELLGLDQTELRTGLCARVMQTTKGGFKGTVI 408 (1259)
T ss_pred CChHHHHHHHHHHHHHHHccccchhcccCcCCCceecccCchhhHHHHHHHhCCCHHHHHHHHHHHHHHhccCCccceEE
Confidence 47899999999999999999999997653 34677764 56899999999999999999999876643 24578
Q ss_pred EeccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCCceEEEEeecccccccCcCcHHHHHhhhhhH
Q psy17848 72 TKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIGILDMAGFEIFELNSFEQLCINYTNE 151 (363)
Q Consensus 72 ~~~~~~~~~~~~~~~a~~~rdalak~LY~~LF~wiv~~iN~~L~~~~~~~~~~IgiLDi~GFE~~~~NsfeQlcINyanE 151 (363)
..|+.+.+ |..+||||||++|++||+|||.+||+++.-.+ +..+||||||.|||.|.+||||||||||+||
T Consensus 409 rVPLK~~e-------A~n~RDALaKaiYSkLFD~lV~~iNqsiPFe~--St~fiGVLDiAGFEyf~~NSFEQFCINyCNE 479 (1259)
T KOG0163|consen 409 RVPLKIHE-------ASNARDALAKAIYSKLFDWLVGRINQSIPFEK--STFFIGVLDIAGFEYFAVNSFEQFCINYCNE 479 (1259)
T ss_pred EeeccHHh-------hcchHHHHHHHHHHHHHHHHHHHhhccccccc--ccceeEEEeeccceeeecccHHHHHHHHHHH
Confidence 89999999 99999999999999999999999999997543 3579999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHhCCcccccccCCChhHHHHhhc-CcchhhhhhhhhccCCCCChHHHHHHHHHhhcccccc
Q psy17848 152 KLQQLFNHTMFILEQEEYQREGIEWKFIDFGLDLQPTIDLID-KPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKF 230 (363)
Q Consensus 152 ~Lq~~f~~~~f~~e~~~Y~~Egi~~~~i~~~~d~~~~ldli~-~p~Gil~lLdee~~~~~~~d~~f~~kl~~~~~~~~~~ 230 (363)
+||++|++++++.||++|+.||++++.|.|. ||++|++||+ |..|||++||||.++|+.++.+|....++.+.+|.+.
T Consensus 480 KLQ~FFNerILkeEQElYekEGLnv~ei~f~-DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~HfRL 558 (1259)
T KOG0163|consen 480 KLQKFFNERILKEEQELYEKEGLNVPEIEFT-DNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHESNKNHFRL 558 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCceEec-cchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHhhhcceee
Confidence 9999999999999999999999999999995 9999999998 6789999999999999999999999999999887543
Q ss_pred ccccccCCccceeeeccCCcccccccccccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccc
Q psy17848 231 KKTDFRGVADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAE 310 (363)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~gil~lldee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~ 310 (363)
. .|+.+ ++. . | ...+....|.|+||||.|+|.+.
T Consensus 559 ~-------------------------------~PRkS------klk-s---H-----R~lRDdEG~liRHfAGaVCYeT~ 592 (1259)
T KOG0163|consen 559 D-------------------------------LPRKS------KLK-S---H-----RELRDDEGFLIRHFAGAVCYETE 592 (1259)
T ss_pred c-------------------------------CCchh------hhh-h---h-----hhhccccceeeeecccceeechH
Confidence 1 12211 110 0 1 11234557999999999999999
Q ss_pred cchhhcCCchhHHHHHHHHhcCcHHHHhhcccchhhhcc--ccccccccccccCC
Q psy17848 311 KWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIVGMA--QQAMSDTQFGARTR 363 (363)
Q Consensus 311 gflekN~d~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~--~~~~~~~~~~~~~~ 363 (363)
.|+|||.|.|...+..|++.|++++|..||+...-++.. ..+++-..+|||||
T Consensus 593 ~FvEKNnD~LH~SLe~Li~es~~~ll~sLF~S~s~t~a~~~~gkL~~iSVGaKFK 647 (1259)
T KOG0163|consen 593 QFVEKNNDALHNSLEGLIEESDNPLLVSLFPSGSSTSAKQTRGKLKFISVGAKFK 647 (1259)
T ss_pred HHHHhccHHHHHHHHHHHHhccchHHHHHccCCCCCccccccceeeEEehhHHHH
Confidence 999999999999999999999999999999987655543 33456666777664
No 21
>KOG0160|consensus
Probab=100.00 E-value=4.9e-60 Score=490.70 Aligned_cols=277 Identities=41% Similarity=0.677 Sum_probs=252.4
Q ss_pred CChHHHHHHHHHHHHHHHHcCceEEeecCCCccccCChHHHHHHHHHcCCCHHHHHHHhccceeeecceEEEeccchhhh
Q psy17848 1 MPPPTVRAIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQW 80 (363)
Q Consensus 1 ~s~~e~~~I~~ilaaILhLGni~f~~~~~~~~~~i~~~~~~~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (363)
++.++|..||++||||||||||+|....+.+.....+ +.+..+|.|||++.+.|...|+.+.+..+++.+.++++..+
T Consensus 254 i~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~-~~~~~~a~Llg~~~~~l~~~L~~r~i~~~~e~i~k~l~~~q- 331 (862)
T KOG0160|consen 254 ISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVD-DHLWTAAELLGCDEEALEQWLSKRKILTARESIVKPLTLSQ- 331 (862)
T ss_pred CChHHHHHHHHHHHHHhccCceEeecccccccccccc-hHHHHHHHHhCCCHHHHHHHHHHHHhhcccceeecccCHHH-
Confidence 4678999999999999999999998776653333223 38899999999999999999999999999999999999999
Q ss_pred ccChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCCceEEEEeecccccccCcCcHHHHHhhhhhHHHHHHHHHh
Q psy17848 81 FKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHT 160 (363)
Q Consensus 81 ~~~~~~a~~~rdalak~LY~~LF~wiv~~iN~~L~~~~~~~~~~IgiLDi~GFE~~~~NsfeQlcINyanE~Lq~~f~~~ 160 (363)
|...||++||.||++||+|+|.+||..|.........+||||||||||.|+.|+|||||||||||+||+.|++|
T Consensus 332 ------a~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINyanEkLqq~fnqH 405 (862)
T KOG0160|consen 332 ------AVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYANEKLQQQFNQH 405 (862)
T ss_pred ------HHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccccCcHHHhhhhhHHHHhhHHHHHH
Confidence 99999999999999999999999999998755555689999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhCCcccccccCCChhHHHHhhcCcchhhhhhhhhccCCCCChHHHHHHHHHhhccccccccccccCCcc
Q psy17848 161 MFILEQEEYQREGIEWKFIDFGLDLQPTIDLIDKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVAD 240 (363)
Q Consensus 161 ~f~~e~~~Y~~Egi~~~~i~~~~d~~~~ldli~~p~Gil~lLdee~~~~~~~d~~f~~kl~~~~~~~~~~~~~~~~~~~~ 240 (363)
+|+.||++|..|+|+|..++|. ||++|+++|++|.|++++||++|.+|++++++|..||.+.+..
T Consensus 406 vfk~Eqeey~~e~i~Ws~ief~-dNq~~~~lie~~~Gi~~Llde~c~lp~~t~~~~a~KL~~~~~~-------------- 470 (862)
T KOG0160|consen 406 VFKLEQEEYTKEEIDWSGIEFR-DNQECLDLIEKPLGILALLDEECMLPKGTDETLAQKLYQTLKR-------------- 470 (862)
T ss_pred HHHHHHHHHHhhccccccccCc-CccchhhhhccccchhhccchhccCCCCCcchHHHHHHHHhcc--------------
Confidence 9999999999999999999994 9999999999999999999999999999999999999776543
Q ss_pred ceeeeccCCcccccccccccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccchhhcCCch
Q psy17848 241 FAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLMKNMDPL 320 (363)
Q Consensus 241 ~~~~~~~~~~~gil~lldee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gflekN~d~l 320 (363)
++.|.+++.. ...|+|.||||+|+|++.+|++||+|.+
T Consensus 471 -----------------------------------------~~~f~kpr~~-~~~f~v~hyAg~v~y~~~~fL~knrd~v 508 (862)
T KOG0160|consen 471 -----------------------------------------NKRFTKPRLS-RTDFRVAHYAGDVTYDTEGFLEKNRDYV 508 (862)
T ss_pred -----------------------------------------CCccCCCCCC-cCCcccccccCccccchhhhccCCcccc
Confidence 4555555543 3469999999999999999999999999
Q ss_pred hHHHHHHHHhcCcHHHHhhccc
Q psy17848 321 NENVVSLLQVSQDPFVAHIWKD 342 (363)
Q Consensus 321 ~~~~~~ll~~S~~~~i~~lf~~ 342 (363)
+.+..+++..|+++++..+|+.
T Consensus 509 ~~el~~ll~~s~~~~~~~~~~~ 530 (862)
T KOG0160|consen 509 SDELIDLLLASDCHFVAGLAPP 530 (862)
T ss_pred CHHHHhhhhhcccchHHHhccc
Confidence 9999999999999999999983
No 22
>KOG4229|consensus
Probab=100.00 E-value=6.7e-52 Score=439.58 Aligned_cols=280 Identities=35% Similarity=0.590 Sum_probs=252.0
Q ss_pred CChHHHHHHHHHHHHHHHHcCceEEeec--CCCccccCChHHHHHHHHHcCCCHHHHHHHhccceeeecceEEEeccchh
Q psy17848 1 MPPPTVRAIFRIVSAVMLFGSMQFKQER--NSDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKE 78 (363)
Q Consensus 1 ~s~~e~~~I~~ilaaILhLGni~f~~~~--~~~~~~i~~~~~~~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~~~~~~ 78 (363)
|+.+++..||+++|||||+|||+|.... ..+.+.+.+...+..+|.||.++.+.|.++++.++....++.+..+++++
T Consensus 309 f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~~~~v~~vA~lL~~~~~~l~~alt~~~~~~~ge~~~~~l~~~ 388 (1062)
T KOG4229|consen 309 FTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVENEEAVERVACLLLIKEKLLQEALTARVNVTRGELLLAPLLVE 388 (1062)
T ss_pred cchhHHHHHHHhcccceeecceeHHhhhcccccchhcccchHHHHHHHHhhcCHHHhhhhhcccceeeehhhhhhhhhHH
Confidence 5678999999999999999999997643 34567888999999999999999999999999998888889999999999
Q ss_pred hhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCC-CceEEEEeecccccccCcCcHHHHHhhhhhHHHHHHH
Q psy17848 79 QWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQ-GASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLF 157 (363)
Q Consensus 79 ~~~~~~~~a~~~rdalak~LY~~LF~wiv~~iN~~L~~~~~~-~~~~IgiLDi~GFE~~~~NsfeQlcINyanE~Lq~~f 157 (363)
+ |.+.||++||+||++||.|||.+||..+.++... ...+||||||||||+|..|+|||+|||||||+||.+|
T Consensus 389 ~-------A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in~Ane~lQ~~f 461 (1062)
T KOG4229|consen 389 R-------AVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNSFEQLCINLANEQLQYYF 461 (1062)
T ss_pred H-------hccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhHHHHHHHHHHHHHHHHHH
Confidence 9 9999999999999999999999999999875432 3578999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHhCCcccccccCCChhHHHHhhc-CcchhhhhhhhhccCCCCChHHHHHHHHHhhcccccccccccc
Q psy17848 158 NHTMFILEQEEYQREGIEWKFIDFGLDLQPTIDLID-KPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFR 236 (363)
Q Consensus 158 ~~~~f~~e~~~Y~~Egi~~~~i~~~~d~~~~ldli~-~p~Gil~lLdee~~~~~~~d~~f~~kl~~~~~~~~~~~~~~~~ 236 (363)
++++|..||++|..|+|+|..+.|. ||.+++|+|. +|.||+.+||+|+.+|+++|.+++.|++.+++.
T Consensus 462 nqhIf~~Eq~ey~~e~I~w~~i~~~-dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k~~~q~~~---------- 530 (1062)
T KOG4229|consen 462 NQHIFALEQEEYDNESIDWRNIEFA-DNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLKLNMQHGS---------- 530 (1062)
T ss_pred HHHHHHHhHHHhhhcCCCeeeeeee-eccchhhhhccCccchhheecccCcCCchHHHHHHHHhhhhhhc----------
Confidence 9999999999999999999999996 9999999998 699999999999999999999999998877664
Q ss_pred CCccceeeeccCCcccccccccccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccchhhc
Q psy17848 237 GVADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLMKN 316 (363)
Q Consensus 237 ~~~~~~~~~~~~~~~gil~lldee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gflekN 316 (363)
+..|..++......|+|.||||.|.|++.||++||
T Consensus 531 ---------------------------------------------~~~y~~~k~~~e~~f~I~Hyagkv~y~~~~flekN 565 (1062)
T KOG4229|consen 531 ---------------------------------------------NNLYVFPKSRVETVFGITHYAGKVQYNIRGFLEKN 565 (1062)
T ss_pred ---------------------------------------------ccccccccccccceeeeeeecceehhhhhhHHHhh
Confidence 22233333344568999999999999999999999
Q ss_pred CCchhHHHHHHHHhcCcHHHHhhcccc
Q psy17848 317 MDPLNENVVSLLQVSQDPFVAHIWKDA 343 (363)
Q Consensus 317 ~d~l~~~~~~ll~~S~~~~i~~lf~~~ 343 (363)
+|.++.++..+++.|.+.+++.+....
T Consensus 566 rD~~~~d~~~~~~s~~~~~~~~~~~~~ 592 (1062)
T KOG4229|consen 566 RDTVRNDLVNLLRSSDESLLRQLVNGD 592 (1062)
T ss_pred hhhhhhhHHhhcccccchhhcccCCCC
Confidence 999999999999999999999887553
No 23
>KOG0161|consensus
Probab=98.08 E-value=2.9e-06 Score=96.90 Aligned_cols=162 Identities=28% Similarity=0.409 Sum_probs=104.4
Q ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHhCCcccccccCCChhHHHHhhcCcchhhhhhhhhccCCCCChHHHHHHH----H
Q psy17848 146 INYTNEKLQQLFNHTMFILEQEEYQREGIEWKFIDFGLDLQPTIDLIDKPMGIMALLDEECWFPKATDRSFVEKL----V 221 (363)
Q Consensus 146 INyanE~Lq~~f~~~~f~~e~~~Y~~Egi~~~~i~~~~d~~~~ldli~~p~Gil~lLdee~~~~~~~d~~f~~kl----~ 221 (363)
.+++=+.+....+..+|.+ ...+.+.+++|. .+...+|.+++-| ..|- +...|.+.++.++ .
T Consensus 413 ~~~~v~alAk~lYerlF~w-lV~riN~sld~~-----~~~~~fIgvLDia-------GFEI-fe~nSFEQLciNytnEkL 478 (1930)
T KOG0161|consen 413 VLFAVEALAKALYERLFGW-LVKRINKSLDSK-----QQRDYFIGVLDIA-------GFEI-FEFNSFEQLCINYTNEKL 478 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhc-----cccCCcceeeeec-------cccc-cCcCCHHHHHHHHHHHHH
Confidence 7788899999888888864 566777778775 2333444433332 2221 2235666665322 1
Q ss_pred Hhhcccccc--------------ccccccCCccceeeeccCCcccccccccccccCCCCCchHHHHHHHhhccCCCCCcc
Q psy17848 222 QSHSQHAKF--------------KKTDFRGVADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKK 287 (363)
Q Consensus 222 ~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~gil~lldee~~~p~~~d~~fl~~l~~~~~~~~~~~~ 287 (363)
+++.+|..| ..+|| |..=-+|++++++|+||+++|||||++|++||.+|+++|... |-...
T Consensus 479 QqfFnh~mFvlEqeeY~~EgIew~fidf-G~Dlq~~idLIEkp~Gi~slLdEEc~~PkAtd~tf~~kL~~~---~~gk~- 553 (1930)
T KOG0161|consen 479 QQFFNHHMFVLEQEEYQREGIEWDFIDF-GLDLQPTIDLIEKPMGILSLLDEECVVPKATDKTFLEKLCDQ---HLGKH- 553 (1930)
T ss_pred HhhhcchhhhhhHHHHHHhCCceeeecc-ccchhhhHHHHhchhhHHHHHHHHHhcCCCccchHHHHHHHH---hhccC-
Confidence 333444433 33443 333358899999999999999999999999999999999643 42221
Q ss_pred cCCCCC-ccceeeeeccceeeccccchhhcCCchhHHHHHHHHhcCcHHH
Q psy17848 288 TDFRGV-ADFAIVHYAGKVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFV 336 (363)
Q Consensus 288 ~~~~~~-~~F~I~H~aG~V~Y~~~gflekN~d~l~~~~~~ll~~S~~~~i 336 (363)
+.+.++ ..+...||+= ++| .+.|.+++...+.+.++|+-
T Consensus 554 ~~f~~~k~~~~~~~F~l-~Hy---------aG~V~Y~~~~WL~Knkdpln 593 (1930)
T KOG0161|consen 554 PKFQKPKGKKAEAHFAL-VHY---------AGTVDYNVDGWLEKNKDPLN 593 (1930)
T ss_pred ccccCcccccchhhhhe-eee---------cceeccCccchhhcCCCCch
Confidence 233222 2355667763 678 44478888889988877653
No 24
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=97.95 E-value=5.1e-06 Score=91.30 Aligned_cols=170 Identities=26% Similarity=0.427 Sum_probs=115.3
Q ss_pred cCcHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHhCCcccccccCCChhHHHHhhcCcchhhhhhhhhccCCCCChHHHH
Q psy17848 138 LNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFIDFGLDLQPTIDLIDKPMGIMALLDEECWFPKATDRSFV 217 (363)
Q Consensus 138 ~NsfeQlcINyanE~Lq~~f~~~~f~~e~~~Y~~Egi~~~~i~~~~d~~~~ldli~~p~Gil~lLdee~~~~~~~d~~f~ 217 (363)
..+.+|.. .+-+.|.+..++..|.+=-+ .|+-. .+..+. ..+..||+++...|- |.+.+.+.|+
T Consensus 387 ~~n~~QA~--~irdslAK~lY~~lFdwiV~-----rIN~s-----L~~~~~---~~~fIGVLDIyGFEi-FEkNSFEQlC 450 (1463)
T COG5022 387 PLNLEQAL--AIRDSLAKALYSNLFDWIVD-----RINKS-----LDHSAA---ASNFIGVLDIYGFEI-FEKNSFEQLC 450 (1463)
T ss_pred cCCHHHHH--HHHHHHHHHHHHHHHHHHHH-----HHHhh-----ccCccc---cccceeEEeecchhh-hccCcHHHHH
Confidence 45677877 67788888888888853222 22211 111111 235569999999986 8899999997
Q ss_pred -----HHHHHhhcccc-------------ccccccccCCccceeeeccCC--cccccccccccccCCCCCchHHHHHHHh
Q psy17848 218 -----EKLVQSHSQHA-------------KFKKTDFRGVADFAIVHYAGK--PMGIMALLDEECWFPKATDRSFVEKLVQ 277 (363)
Q Consensus 218 -----~kl~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~--~~gil~lldee~~~p~~~d~~fl~~l~~ 277 (363)
+||.|-+..|. .|..++| .++-+|++.+++ |.|||++|||||+.|.++|.+|..+|.+
T Consensus 451 INYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy--~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~ 528 (1463)
T COG5022 451 INYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDY--FDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQ 528 (1463)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhcCccccccc--ccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHH
Confidence 66655555544 3344444 345689998888 9999999999999999999999999964
Q ss_pred hccCCCCCcccCCCCCccceeeeeccceeeccccchhh-cCCchhHHHHHHHHhcCcHHHHhhc
Q psy17848 278 SHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLMK-NMDPLNENVVSLLQVSQDPFVAHIW 340 (363)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gflek-N~d~l~~~~~~ll~~S~~~~i~~lf 340 (363)
. +.++ ..+.|.-.-++ -.+|+-| -..-|.+++.+++.+++|++=..++
T Consensus 529 ~------l~~~---~~~~f~~~rf~------~~~FvvkHYAgDVeY~veg~ldKNkD~l~~~ll 577 (1463)
T COG5022 529 R------LNKN---SNPKFKKSRFR------DNKFVVKHYAGDVEYDVEGFLDKNKDPLNDDLL 577 (1463)
T ss_pred H------hccc---cCccccccccC------CCceEEEeecccceeeccchhhhCcchhhHHHH
Confidence 2 3321 11234433333 3466554 3556999999999999988755544
No 25
>PTZ00014 myosin-A; Provisional
Probab=97.92 E-value=2.8e-06 Score=91.35 Aligned_cols=167 Identities=13% Similarity=0.268 Sum_probs=99.2
Q ss_pred CcHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHhCCcccccccCCChhHHHHhhcCcchhhhhhhhhccCCCCChHHHHH
Q psy17848 139 NSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFIDFGLDLQPTIDLIDKPMGIMALLDEECWFPKATDRSFVE 218 (363)
Q Consensus 139 NsfeQlcINyanE~Lq~~f~~~~f~~e~~~Y~~Egi~~~~i~~~~d~~~~ldli~~p~Gil~lLdee~~~~~~~d~~f~~ 218 (363)
.+-+|-- .+-+.|.+..+..+|.+--..- ...|... .+ .....||+++...|+ +...+-+.|+-
T Consensus 422 ~~~~qA~--~~rdalaK~lY~rLF~wiV~~I-N~~l~~~-----~~-------~~~~IGiLDI~GFE~-f~~NSfEQLcI 485 (821)
T PTZ00014 422 WSKDESE--MLKDSLSKAVYEKLFLWIIRNL-NATIEPP-----GG-------FKVFIGMLDIFGFEV-FKNNSLEQLFI 485 (821)
T ss_pred CCHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HHHhcCC-----cc-------cCceEEEEecccccc-cCcchHHHHHH
Confidence 4445553 5566777777777775432211 1111110 00 112358999999997 67788888874
Q ss_pred H-----HHHhhcccc-------------ccccccccCCccceeeec-cCCcccccccccccccCCCCCchHHHHHHHhhc
Q psy17848 219 K-----LVQSHSQHA-------------KFKKTDFRGVADFAIVHY-AGKPMGIMALLDEECWFPKATDRSFVEKLVQSH 279 (363)
Q Consensus 219 k-----l~~~~~~~~-------------~~~~~~~~~~~~~~~~~~-~~~~~gil~lldee~~~p~~~d~~fl~~l~~~~ 279 (363)
+ |.+.+..|. .|..++|. ++-.|+++ +.+|.||+++|||||++|+++|.+|++++++.
T Consensus 486 Ny~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~--dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~kl~~~- 562 (821)
T PTZ00014 486 NITNEMLQKNFVDIVFERESKLYKDEGISTEELEYT--SNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCNTN- 562 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCC--CcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHHHHHH-
Confidence 3 333332222 22233332 24456665 55789999999999999999999999999642
Q ss_pred cCCCCCcccCCCCCccceeeeeccceeeccccchh-hcCCchhHHHHHHHHhcCcHHHHhh
Q psy17848 280 SQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLM-KNMDPLNENVVSLLQVSQDPFVAHI 339 (363)
Q Consensus 280 ~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gfle-kN~d~l~~~~~~ll~~S~~~~i~~l 339 (363)
+.+. +.|.-....++ ..|.= .-.+.|.+++..++.++++++-.++
T Consensus 563 -----~~~~-----~~f~~~~~~~~-----~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~ 608 (821)
T PTZ00014 563 -----LKNN-----PKYKPAKVDSN-----KNFVIKHTIGDIQYCASGFLFKNKDVLRPEL 608 (821)
T ss_pred -----hcCC-----CCccCCCCCCC-----CceEEEEeceeeeeccCcHHHhccccchHHH
Confidence 2221 12332221111 22322 1256799999999999999875544
No 26
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=97.80 E-value=1e-05 Score=86.02 Aligned_cols=126 Identities=28% Similarity=0.492 Sum_probs=81.4
Q ss_pred chhhhhhhhhccCCCCChHHHH-----HHHHHhhcccc-------------ccccccccCCccceeeeccCCcccccccc
Q psy17848 196 MGIMALLDEECWFPKATDRSFV-----EKLVQSHSQHA-------------KFKKTDFRGVADFAIVHYAGKPMGIMALL 257 (363)
Q Consensus 196 ~Gil~lLdee~~~~~~~d~~f~-----~kl~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~gil~ll 257 (363)
.||+++...|+ +...+-+.|+ |+|.+.+..|. .|..++|. ++-+|++..++|.||+++|
T Consensus 370 IgiLDI~GFE~-f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~--DN~~~ldLie~~~Gil~lL 446 (691)
T cd01380 370 IGVLDIYGFET-FEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFY--DNQPCIDLIESKLGILSLL 446 (691)
T ss_pred EEEEecCcccc-cCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCC--CCHHHHHHHhCCCchHHHh
Confidence 48899988887 5667777776 34433333222 22223332 2456777777899999999
Q ss_pred cccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccchhhcCCchhHHHHHHHHhcCcHHHH
Q psy17848 258 DEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVA 337 (363)
Q Consensus 258 dee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gflekN~d~l~~~~~~ll~~S~~~~i~ 337 (363)
||||++|+++|.+|++++++.+ .. .. .+.|.- .-.+...+.+..| .+.|.+++..++.++++.+-.
T Consensus 447 dee~~~p~~td~~f~~kl~~~~--~~--~~-----~~~~~~-~~~~~~~F~I~Hy----AG~V~Y~v~gfleKNrD~l~~ 512 (691)
T cd01380 447 DEECRLPKGSDESWAQKLYNKL--PK--KK-----NPHFEK-PRFGQTSFTVKHF----ADDVEYDVDGFLEKNRDTVSD 512 (691)
T ss_pred HHhhcCCCCChHHHHHHHHHHh--cc--cC-----CCCccC-CCCCCCeeEEEEc----cCCcccccccHHHhccccccH
Confidence 9999999999999999997653 11 01 112221 1111222222222 678999999999999998643
Q ss_pred h
Q psy17848 338 H 338 (363)
Q Consensus 338 ~ 338 (363)
+
T Consensus 513 ~ 513 (691)
T cd01380 513 E 513 (691)
T ss_pred H
Confidence 3
No 27
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=97.65 E-value=2e-05 Score=83.52 Aligned_cols=128 Identities=22% Similarity=0.382 Sum_probs=80.2
Q ss_pred chhhhhhhhhccCCCCChHHHHHHH-----HHhhcccc------cc--ccccccC---Cccceeeec-cCCccccccccc
Q psy17848 196 MGIMALLDEECWFPKATDRSFVEKL-----VQSHSQHA------KF--KKTDFRG---VADFAIVHY-AGKPMGIMALLD 258 (363)
Q Consensus 196 ~Gil~lLdee~~~~~~~d~~f~~kl-----~~~~~~~~------~~--~~~~~~~---~~~~~~~~~-~~~~~gil~lld 258 (363)
.||+++...|+ +...+-+.|+-++ .+.+..|. .| ..++|.. .++-.|++. ..+|.||+++||
T Consensus 364 IgiLDIfGFE~-f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLD 442 (671)
T cd01381 364 IGVLDIFGFEN-FDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLID 442 (671)
T ss_pred EEEEecCCccc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceech
Confidence 48999999997 6677888887433 33322222 11 1223221 223466665 557899999999
Q ss_pred ccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccchhhcCCchhHHHHHHHHhcCcHHHHh
Q psy17848 259 EECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAH 338 (363)
Q Consensus 259 ee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gflekN~d~l~~~~~~ll~~S~~~~i~~ 338 (363)
|||.+|+++|.+|++++++. + .. .+.|.-.+...+..+.+.. -.+.|.+++..++.++++.+-.+
T Consensus 443 ee~~~p~~td~~f~~kl~~~---~---~~-----~~~~~~~~~~~~~~F~I~H----yAG~V~Y~~~gfleKN~D~l~~~ 507 (671)
T cd01381 443 EESKFPKGTDQTMLEKLHSQ---H---GL-----HSNYLKPKSTQETQFGINH----FAGVVFYDTRGFLEKNRDTFSGD 507 (671)
T ss_pred HhhcCCCCCHHHHHHHHHHH---h---cC-----CCCcccCCCCCCCceEEEE----ecceEeeccCCHHHhccchhhHH
Confidence 99999999999999999642 2 21 1234322221222222222 35569999999999999976443
Q ss_pred h
Q psy17848 339 I 339 (363)
Q Consensus 339 l 339 (363)
+
T Consensus 508 ~ 508 (671)
T cd01381 508 L 508 (671)
T ss_pred H
Confidence 3
No 28
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=97.64 E-value=1.7e-05 Score=84.38 Aligned_cols=128 Identities=29% Similarity=0.491 Sum_probs=81.4
Q ss_pred chhhhhhhhhccCCCCChHHHH-----HHHHHhhcccc------cc--ccccccC----Cccceeeec-cCCcccccccc
Q psy17848 196 MGIMALLDEECWFPKATDRSFV-----EKLVQSHSQHA------KF--KKTDFRG----VADFAIVHY-AGKPMGIMALL 257 (363)
Q Consensus 196 ~Gil~lLdee~~~~~~~d~~f~-----~kl~~~~~~~~------~~--~~~~~~~----~~~~~~~~~-~~~~~gil~ll 257 (363)
.||+++...|+ +...+-+.|+ |+|.+.+..+. .| .+++|.. .++-.|+++ ..+|.||+++|
T Consensus 376 IgiLDIfGFE~-f~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lL 454 (693)
T cd01377 376 IGVLDIAGFEI-FDFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLL 454 (693)
T ss_pred EEEEecccccc-cCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhh
Confidence 48999999998 6678888887 44433332221 11 1233322 123456665 44599999999
Q ss_pred cccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccc-eeeeeccceeeccccchhhcCCchhHHHHHHHHhcCcHHH
Q psy17848 258 DEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADF-AIVHYAGKVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFV 336 (363)
Q Consensus 258 dee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F-~I~H~aG~V~Y~~~gflekN~d~l~~~~~~ll~~S~~~~i 336 (363)
||||++|+++|.+|++++++.+ .. ...| ....-.++-.+.+..| .+.|.+++..++.++++.+-
T Consensus 455 dee~~~~~~tD~~~~~kl~~~~------~~-----~~~~~~~~~~~~~~~F~I~Hy----AG~V~Y~~~gfleKN~D~l~ 519 (693)
T cd01377 455 DEECVFPKATDKTFVEKLYDNH------LG-----KSKFKKPKKGKAKAHFSLVHY----AGTVDYNIDGWLEKNKDPLN 519 (693)
T ss_pred hHHhcCCCCCHHHHHHHHHHHh------cC-----CCcccccCCCCCCCcEEEEee----ceeEeeccccHHHhcccccc
Confidence 9999999999999999997543 11 1223 1112222223333333 45699999999999998766
Q ss_pred Hhh
Q psy17848 337 AHI 339 (363)
Q Consensus 337 ~~l 339 (363)
.++
T Consensus 520 ~~~ 522 (693)
T cd01377 520 DNV 522 (693)
T ss_pred HHH
Confidence 544
No 29
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=97.62 E-value=1.7e-05 Score=84.11 Aligned_cols=123 Identities=24% Similarity=0.401 Sum_probs=80.4
Q ss_pred chhhhhhhhhccCCCCChHHHHHHH-----HHhhcccc-------------ccccccccCCccceeeec-cCCccccccc
Q psy17848 196 MGIMALLDEECWFPKATDRSFVEKL-----VQSHSQHA-------------KFKKTDFRGVADFAIVHY-AGKPMGIMAL 256 (363)
Q Consensus 196 ~Gil~lLdee~~~~~~~d~~f~~kl-----~~~~~~~~-------------~~~~~~~~~~~~~~~~~~-~~~~~gil~l 256 (363)
.||+++-..|+ +...+-+.|+-++ .+.+..+. .|..++|. ++-.|+++ +.+|.||+++
T Consensus 367 IgiLDI~GFE~-f~~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~--dN~~~ldLie~kp~Gil~l 443 (677)
T cd01383 367 ISILDIYGFES-FDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFE--DNQECLDLFEKKPLGLLSL 443 (677)
T ss_pred EEEeecccccc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCC--CcHHHHHHHhcCCccHHHH
Confidence 48999999997 6677888887443 33222221 22233332 23456665 5578999999
Q ss_pred ccccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccchhh-cCCchhHHHHHHHHhcCcHH
Q psy17848 257 LDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLMK-NMDPLNENVVSLLQVSQDPF 335 (363)
Q Consensus 257 ldee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gflek-N~d~l~~~~~~ll~~S~~~~ 335 (363)
|||||++|+++|.+|++++++. +.. .+.|.-. ....|.=+ -.+.|.+++..++.++++++
T Consensus 444 Ldee~~~p~~tD~~f~~kl~~~------~~~-----~~~~~~~--------~~~~F~I~HyAG~V~Y~v~gfleKNrD~l 504 (677)
T cd01383 444 LDEESTFPNATDLTFANKLKQH------LKT-----NSCFRGE--------RGGAFTVRHYAGEVTYDTTGFLEKNRDLL 504 (677)
T ss_pred hHHHHcCCCCCHHHHHHHHHHH------hCC-----CCCCCCC--------CCCceEEEEeccceeecCCChHHhccccc
Confidence 9999999999999999999642 221 1223211 01234322 35679999999999999976
Q ss_pred HHhhc
Q psy17848 336 VAHIW 340 (363)
Q Consensus 336 i~~lf 340 (363)
-.++.
T Consensus 505 ~~~~~ 509 (677)
T cd01383 505 HSDSI 509 (677)
T ss_pred cHHHH
Confidence 65543
No 30
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=97.60 E-value=1.7e-05 Score=84.03 Aligned_cols=124 Identities=29% Similarity=0.475 Sum_probs=79.3
Q ss_pred chhhhhhhhhccCCCCChHHHHH-----HHHHhhcccc-------------ccccccccCCccceeeec-cCCccccccc
Q psy17848 196 MGIMALLDEECWFPKATDRSFVE-----KLVQSHSQHA-------------KFKKTDFRGVADFAIVHY-AGKPMGIMAL 256 (363)
Q Consensus 196 ~Gil~lLdee~~~~~~~d~~f~~-----kl~~~~~~~~-------------~~~~~~~~~~~~~~~~~~-~~~~~gil~l 256 (363)
.||+++...|+ +...+-+.|+- +|.+.+..+. .|..++|. ++-.|+++ ..+|.||+++
T Consensus 369 IgiLDI~GFE~-f~~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~--DN~~~ldLie~~~~Gil~l 445 (674)
T cd01384 369 IGVLDIYGFES-FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFV--DNQDVLDLIEKKPGGIIAL 445 (674)
T ss_pred EEEEecccccc-cCcCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCC--ChHHHHHHHhcCCccHHHH
Confidence 48899999987 56678888873 3333332221 22233332 23466665 5568999999
Q ss_pred ccccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccchh-hcCCchhHHHHHHHHhcCcHH
Q psy17848 257 LDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLM-KNMDPLNENVVSLLQVSQDPF 335 (363)
Q Consensus 257 ldee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gfle-kN~d~l~~~~~~ll~~S~~~~ 335 (363)
|||||++|+++|.+|++++++. +... +.|.-... ....|.= --.+.|.+++..++.++++.+
T Consensus 446 Ldee~~~p~~td~~f~~kl~~~------~~~~-----~~~~~~~~------~~~~F~I~HyAG~V~Y~v~gfleKN~D~l 508 (674)
T cd01384 446 LDEACMFPKSTHETFAQKLYQT------FKDH-----KRFEKPKL------SRTAFTIDHYAGDVTYQTDQFLDKNKDYV 508 (674)
T ss_pred HHHHHcCCCCCHHHHHHHHHHH------hcCC-----CCCCCCCC------CCCeeEEEEecceeeecCCCHHHhcCCcc
Confidence 9999999999999999999642 2221 12321111 1123322 236689999999999999866
Q ss_pred HHhh
Q psy17848 336 VAHI 339 (363)
Q Consensus 336 i~~l 339 (363)
-.++
T Consensus 509 ~~~~ 512 (674)
T cd01384 509 VAEH 512 (674)
T ss_pred cHHH
Confidence 5544
No 31
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=97.60 E-value=2e-05 Score=83.56 Aligned_cols=128 Identities=20% Similarity=0.398 Sum_probs=79.7
Q ss_pred chhhhhhhhhccCCCCChHHHH-----HHHHHhhcccc------cc--ccccccC---CccceeeeccC--Ccccccccc
Q psy17848 196 MGIMALLDEECWFPKATDRSFV-----EKLVQSHSQHA------KF--KKTDFRG---VADFAIVHYAG--KPMGIMALL 257 (363)
Q Consensus 196 ~Gil~lLdee~~~~~~~d~~f~-----~kl~~~~~~~~------~~--~~~~~~~---~~~~~~~~~~~--~~~gil~ll 257 (363)
.||+++...|+ +...+-+.++ |+|.+.+..|. .| .+++|.. .++-.|+++.. +|.||+++|
T Consensus 368 IgILDIfGFE~-f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lL 446 (674)
T cd01378 368 IGVLDIYGFEI-FQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSIL 446 (674)
T ss_pred EEEEecccccc-cccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHH
Confidence 48888888887 6677778776 33333332222 11 1233322 22346666644 589999999
Q ss_pred cccccCC-CCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccchhhcCCchhHHHHHHHHhcCcHHH
Q psy17848 258 DEECWFP-KATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFV 336 (363)
Q Consensus 258 dee~~~p-~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gflekN~d~l~~~~~~ll~~S~~~~i 336 (363)
||||++| +++|.+|++++++. +...+. |. ..-.++..+.+..| .+.|.+++..++.++++++-
T Consensus 447 dee~~~p~~~tD~~~~~kl~~~------~~~~~~-----~~-~~~~~~~~F~I~Hy----AG~V~Y~~~gfleKNrD~l~ 510 (674)
T cd01378 447 DDVCATPHEGTDQTFLEKLNKK------FSSHPH-----SD-HFSSGSDEFRIKHY----AGDVTYSVEGFCDKNKDTLF 510 (674)
T ss_pred HHHHcCCCCCChHHHHHHHHHH------hccCCC-----CC-CCCCCCCcEEEEEe----ceeeeecCcCHHHhhcchhh
Confidence 9999999 99999999999642 222111 11 00112222222222 55799999999999999876
Q ss_pred Hhhc
Q psy17848 337 AHIW 340 (363)
Q Consensus 337 ~~lf 340 (363)
.++.
T Consensus 511 ~~~~ 514 (674)
T cd01378 511 KDLI 514 (674)
T ss_pred HHHH
Confidence 6554
No 32
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=97.57 E-value=3.2e-05 Score=82.03 Aligned_cols=125 Identities=18% Similarity=0.335 Sum_probs=79.6
Q ss_pred cchhhhhhhhhccCCCCChHHHH-----HHHHHhhcccc-------------ccccccccCCccceeeec-cCCcccccc
Q psy17848 195 PMGIMALLDEECWFPKATDRSFV-----EKLVQSHSQHA-------------KFKKTDFRGVADFAIVHY-AGKPMGIMA 255 (363)
Q Consensus 195 p~Gil~lLdee~~~~~~~d~~f~-----~kl~~~~~~~~-------------~~~~~~~~~~~~~~~~~~-~~~~~gil~ 255 (363)
..||+++-..|+ +...+-+.|+ |+|.+.+..+. .|..++|. ++-+|+++ +++|.||++
T Consensus 362 ~IgILDIfGFE~-f~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~--dN~~~ldLi~~kp~Gil~ 438 (677)
T cd01387 362 SIAILDIYGFED-LSFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFA--DNQPVINLISLKPYGILR 438 (677)
T ss_pred eEEEEecCcccc-CCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcC--ChHHHHHHHhcCCCchHH
Confidence 358999999997 6678888887 33333332221 22223332 24456665 557899999
Q ss_pred cccccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccch-hhcCCchhHHHHHHHHhcCcH
Q psy17848 256 LLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWL-MKNMDPLNENVVSLLQVSQDP 334 (363)
Q Consensus 256 lldee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gfl-ekN~d~l~~~~~~ll~~S~~~ 334 (363)
+|||||.+|+++|.+|+++++.. + .+. +.|. +.-.+ ...|. .--.+.|.+++..++.++++.
T Consensus 439 lLdee~~~p~~td~~~~~kl~~~---~---~~~-----~~~~-~~~~~-----~~~F~I~HyAG~V~Y~~~gfleKN~D~ 501 (677)
T cd01387 439 ILDDQCCFPQATDHTFLQKCHYH---H---GAN-----PLYS-KPKMP-----LPEFTIKHYAGKVTYQVHKFLDKNHDQ 501 (677)
T ss_pred HHHHHhcCCCCchHHHHHHHHHh---c---cCC-----cccc-CCCCC-----CCeeEEEEeCceeeecCCChHHhccch
Confidence 99999999999999999998531 2 211 1121 11011 12332 223567999999999999997
Q ss_pred HHHhh
Q psy17848 335 FVAHI 339 (363)
Q Consensus 335 ~i~~l 339 (363)
+-.++
T Consensus 502 l~~~~ 506 (677)
T cd01387 502 VRQDV 506 (677)
T ss_pred hhHHH
Confidence 65553
No 33
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=97.47 E-value=4.2e-05 Score=80.77 Aligned_cols=125 Identities=26% Similarity=0.379 Sum_probs=79.5
Q ss_pred chhhhhhhhhccCCCCChHHHHH-----HHHHhhcccc------cc--ccccccC---Cccceeeec-cCCccccccccc
Q psy17848 196 MGIMALLDEECWFPKATDRSFVE-----KLVQSHSQHA------KF--KKTDFRG---VADFAIVHY-AGKPMGIMALLD 258 (363)
Q Consensus 196 ~Gil~lLdee~~~~~~~d~~f~~-----kl~~~~~~~~------~~--~~~~~~~---~~~~~~~~~-~~~~~gil~lld 258 (363)
.||+++...|+ +...+-+.|+- +|.+.+..+. .| .+++|.. .++-+|++. ..+|.||+++||
T Consensus 375 IgiLDI~GFE~-f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLd 453 (653)
T cd01379 375 VGILDIFGFEN-FKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLD 453 (653)
T ss_pred EEEEecccccc-CCCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHH
Confidence 48999999987 66788888873 3333332222 11 1233322 224566665 568899999999
Q ss_pred ccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccchh-hcCCchhHHHHHHHHhcCcHHHH
Q psy17848 259 EECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLM-KNMDPLNENVVSLLQVSQDPFVA 337 (363)
Q Consensus 259 ee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gfle-kN~d~l~~~~~~ll~~S~~~~i~ 337 (363)
|||++|+++|.+|++|+++ .+..+ .|.-.. . ....|.= --.+.|.+++..++.++++.+-.
T Consensus 454 ee~~~~~~td~~~~~kl~~------~~~~~------~~~~~~-~-----~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~ 515 (653)
T cd01379 454 EESRFPQATDQTLVEKFED------NLKSK------FFWRPK-R-----VELSFGIHHYAGKVLYNASGFLEKNRDFLPA 515 (653)
T ss_pred HHhcCCCCCHHHHHHHHHH------hcCCC------CccCCC-C-----CCCceEEEEeceeEeecCCCHHHhccccccH
Confidence 9999999999999999953 12211 111111 1 1123322 22567999999999999998665
Q ss_pred hh
Q psy17848 338 HI 339 (363)
Q Consensus 338 ~l 339 (363)
++
T Consensus 516 ~~ 517 (653)
T cd01379 516 DI 517 (653)
T ss_pred HH
Confidence 54
No 34
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=97.43 E-value=6e-05 Score=80.48 Aligned_cols=136 Identities=19% Similarity=0.312 Sum_probs=88.1
Q ss_pred chhhhhhhhhccCCCCChHHHHH-----HHHHhhcccc------cc--ccccccC---Cccceeeec-cCCccccccccc
Q psy17848 196 MGIMALLDEECWFPKATDRSFVE-----KLVQSHSQHA------KF--KKTDFRG---VADFAIVHY-AGKPMGIMALLD 258 (363)
Q Consensus 196 ~Gil~lLdee~~~~~~~d~~f~~-----kl~~~~~~~~------~~--~~~~~~~---~~~~~~~~~-~~~~~gil~lld 258 (363)
.||+++...|+ +...+-+.|+- +|.+.+..+. .| .+++|.. .++-.|++. +.+|.||+++||
T Consensus 399 IgiLDIfGFE~-f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLD 477 (717)
T cd01382 399 IGVLDIAGFEY-FEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILD 477 (717)
T ss_pred EEEEecccccc-CCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhH
Confidence 48999999987 56788888873 3333332221 11 1233322 223456665 567889999999
Q ss_pred ccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccchh-hcCCchhHHHHHHHHhcCcHHHH
Q psy17848 259 EECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLM-KNMDPLNENVVSLLQVSQDPFVA 337 (363)
Q Consensus 259 ee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gfle-kN~d~l~~~~~~ll~~S~~~~i~ 337 (363)
|||++|+++|.+|++++++.++.|+.|..++.. .+. .|- .......|.= --.+.|.+++..++.++++.+-.
T Consensus 478 ee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~---~~~-~~~---~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~ 550 (717)
T cd01382 478 EENRLPQPSDQHFTSVVHQKHKDHFRLTIPRKS---KLA-VHR---NLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHM 550 (717)
T ss_pred HHhcCCCCCHHHHHHHHHHHhcCCcCccCCCcc---ccc-ccc---ccCCCCCEEEEecceeEeecCCChHHhcCccccH
Confidence 999999999999999999999988877655322 121 111 0011122322 22556999999999999987655
Q ss_pred hh
Q psy17848 338 HI 339 (363)
Q Consensus 338 ~l 339 (363)
++
T Consensus 551 ~~ 552 (717)
T cd01382 551 SL 552 (717)
T ss_pred HH
Confidence 43
No 35
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=97.36 E-value=6.2e-05 Score=80.07 Aligned_cols=127 Identities=18% Similarity=0.332 Sum_probs=78.6
Q ss_pred chhhhhhhhhccCCC-CChHHHHHH-----HHHhhcccc------cc--ccccccC---Cccceeeec-cCCcccccccc
Q psy17848 196 MGIMALLDEECWFPK-ATDRSFVEK-----LVQSHSQHA------KF--KKTDFRG---VADFAIVHY-AGKPMGIMALL 257 (363)
Q Consensus 196 ~Gil~lLdee~~~~~-~~d~~f~~k-----l~~~~~~~~------~~--~~~~~~~---~~~~~~~~~-~~~~~gil~ll 257 (363)
.||+++-..|+ +.+ .+-+.|+-+ |.+.+..+. .| .+++|.. ..+-.|+++ +.+|.||+++|
T Consensus 378 IgiLDI~GFE~-f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lL 456 (692)
T cd01385 378 IGVLDIFGFED-FGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLL 456 (692)
T ss_pred EEEEecCcccc-CCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHh
Confidence 48899988987 444 777777633 333222221 11 1233322 224456665 55789999999
Q ss_pred cccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccchhhcCCchhHHHHHHHHhcCcHHHH
Q psy17848 258 DEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVA 337 (363)
Q Consensus 258 dee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gflekN~d~l~~~~~~ll~~S~~~~i~ 337 (363)
||||++|+++|.+|++++++. +. .. +.|.-.+.. ...+.+.. -.+.|.+++..++.++++++-.
T Consensus 457 dee~~~p~~td~~~l~kl~~~---~~---~~-----~~~~~~~~~-~~~F~I~H----yAG~V~Y~~~gfleKN~D~l~~ 520 (692)
T cd01385 457 DEESNFPHATSQTLLAKFNQQ---HK---DN-----KYYEGPQVK-EPAFIIQH----YAGKVKYQIKDFREKNMDLMRQ 520 (692)
T ss_pred HHHhcCCCCCHHHHHHHHHHH---hC---CC-----CCccCCCCC-CCeEEEEE----ecceeeecCCCHHHhccccccH
Confidence 999999999999999999752 31 11 122211111 11222222 3556999999999999998655
Q ss_pred hh
Q psy17848 338 HI 339 (363)
Q Consensus 338 ~l 339 (363)
++
T Consensus 521 ~~ 522 (692)
T cd01385 521 DI 522 (692)
T ss_pred HH
Confidence 44
No 36
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=97.32 E-value=6.7e-05 Score=79.75 Aligned_cols=128 Identities=29% Similarity=0.524 Sum_probs=79.4
Q ss_pred chhhhhhhhhccCCCCChHHHH-----HHHHHhhcccc------cc--ccccccC---Cccceeeec-cCCccccccccc
Q psy17848 196 MGIMALLDEECWFPKATDRSFV-----EKLVQSHSQHA------KF--KKTDFRG---VADFAIVHY-AGKPMGIMALLD 258 (363)
Q Consensus 196 ~Gil~lLdee~~~~~~~d~~f~-----~kl~~~~~~~~------~~--~~~~~~~---~~~~~~~~~-~~~~~gil~lld 258 (363)
.||+++-..|+ +...+-+.|+ |+|.+.+..+. .| .+++|.. ..+-.|++. .++|.||+++||
T Consensus 371 IgiLDifGFE~-f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLd 449 (677)
T smart00242 371 IGVLDIYGFEI-FEVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLD 449 (677)
T ss_pred EEEEecccccc-cccCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHH
Confidence 48888888887 5567777776 33333322211 11 1222222 123455554 567899999999
Q ss_pred ccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccchhhcCCchhHHHHHHHHhcCcHHHHh
Q psy17848 259 EECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAH 338 (363)
Q Consensus 259 ee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gflekN~d~l~~~~~~ll~~S~~~~i~~ 338 (363)
|||++|+++|.+|++++++. +.. .+.|.-..-.++-...+..| .+.|.+++..++.++++.+-.+
T Consensus 450 ee~~~~~~td~~~~~kl~~~------~~~-----~~~~~~~~~~~~~~F~I~H~----AG~V~Y~~~gfleKN~D~l~~~ 514 (677)
T smart00242 450 EECRFPKATDQTFLEKLNQT------HEK-----HPHFSKPRKKGRTEFIIKHY----AGDVTYDVTGFLEKNKDTLFKD 514 (677)
T ss_pred HHhcCCCCCHHHHHHHHHHH------hcC-----CCCccCCCCCCCCeEEEEec----ceeEeecCccHHHHccchhhHH
Confidence 99999999999999999642 222 12233222222333333333 4469999999999999887665
Q ss_pred h
Q psy17848 339 I 339 (363)
Q Consensus 339 l 339 (363)
+
T Consensus 515 ~ 515 (677)
T smart00242 515 L 515 (677)
T ss_pred H
Confidence 4
No 37
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=97.24 E-value=7.8e-05 Score=79.38 Aligned_cols=126 Identities=28% Similarity=0.497 Sum_probs=78.3
Q ss_pred chhhhhhhhhccCCCCChHHHH-----HHHHHhhcccc-------------ccccccccCCccceeeec-cCCccccccc
Q psy17848 196 MGIMALLDEECWFPKATDRSFV-----EKLVQSHSQHA-------------KFKKTDFRGVADFAIVHY-AGKPMGIMAL 256 (363)
Q Consensus 196 ~Gil~lLdee~~~~~~~d~~f~-----~kl~~~~~~~~-------------~~~~~~~~~~~~~~~~~~-~~~~~gil~l 256 (363)
.||+++-..|+ ++..+-+.|+ |+|.+.+..+. .|..+++. ++-.|++. ..+|.||+++
T Consensus 364 IgiLDi~GFE~-f~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~--dn~~~ldli~~~~~Gi~~l 440 (679)
T cd00124 364 IGILDIFGFEI-FEKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFT--DNQEVIDLIEKKPGGLLSL 440 (679)
T ss_pred eeEEecccccc-CCCCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCC--CCHHHHHHHhcCCCcHHHH
Confidence 48888888887 5567777776 33433322211 22223332 34466665 4458999999
Q ss_pred ccccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccchhhcCCchhHHHHHHHHhcCcHHH
Q psy17848 257 LDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFV 336 (363)
Q Consensus 257 ldee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gflekN~d~l~~~~~~ll~~S~~~~i 336 (363)
|||||++|+++|.+|++++++. + .. .+.|...+..++-...+.. -.+.|.+++..++.++++.+-
T Consensus 441 Ldee~~~~~~~d~~~~~kl~~~---~---~~-----~~~~~~~~~~~~~~F~I~H----yAG~V~Y~v~gfleKN~D~l~ 505 (679)
T cd00124 441 LDEECLFPKGTDETFLEKLNNK---L---KS-----NNAFYPAKKNAPTEFTIKH----YAGDVTYDARGFLEKNKDVLS 505 (679)
T ss_pred HHHHhCCCCCCHHHHHHHHHHH---h---cC-----CcccccCCCCCCCceEEEe----eceeEEecCCCHHHhcCCccc
Confidence 9999999999999999999642 2 21 1223222222222222322 245699999999999998765
Q ss_pred Hhh
Q psy17848 337 AHI 339 (363)
Q Consensus 337 ~~l 339 (363)
.++
T Consensus 506 ~~~ 508 (679)
T cd00124 506 PEL 508 (679)
T ss_pred HHH
Confidence 444
No 38
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=97.09 E-value=0.0002 Score=76.93 Aligned_cols=127 Identities=17% Similarity=0.251 Sum_probs=73.3
Q ss_pred chhhhhhhhhccCC-----CCChHHHH-----HHHHHhhcccc------cc--ccccccC----CccceeeeccC-----
Q psy17848 196 MGIMALLDEECWFP-----KATDRSFV-----EKLVQSHSQHA------KF--KKTDFRG----VADFAIVHYAG----- 248 (363)
Q Consensus 196 ~Gil~lLdee~~~~-----~~~d~~f~-----~kl~~~~~~~~------~~--~~~~~~~----~~~~~~~~~~~----- 248 (363)
.||+++...|+.-. +.+-+.|+ |+|.+.+..+. .| .+++|.- .++..++++..
T Consensus 375 IgiLDIfGFE~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~ 454 (767)
T cd01386 375 IMLVDTPGFQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQ 454 (767)
T ss_pred EEEEecccccccccccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhccccc
Confidence 48889988988532 46778877 44433333222 11 2344432 12233444433
Q ss_pred ----------CcccccccccccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccchhhc-C
Q psy17848 249 ----------KPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLMKN-M 317 (363)
Q Consensus 249 ----------~~~gil~lldee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gflekN-~ 317 (363)
+|.||+++|||||++|+++|.+|+++++ ..+.+.+.........++..+ ...|.=+. .
T Consensus 455 ~~~~~~~~~~~~~GIl~lLDEec~~p~~tD~~f~~kl~------~~~~~~~~~~~~~~~~~~~~~-----~~~F~I~HyA 523 (767)
T cd01386 455 VVVPAGLRAEDARGLLWLLDEEALVPGSSDDTFLERLF------AAYGDRETRETGLSRLRTCEG-----PLQFVLFHLL 523 (767)
T ss_pred ccccchhhccCCCchhhhhhHhhcCCCCcHHHHHHHHH------HHhccCCCcccCccccccCCC-----CCcEEEEEcC
Confidence 3569999999999999999999999994 233322111010111111112 22343322 3
Q ss_pred C--chhHHHHHHHHhcCc
Q psy17848 318 D--PLNENVVSLLQVSQD 333 (363)
Q Consensus 318 d--~l~~~~~~ll~~S~~ 333 (363)
+ +|.+++..++.+++|
T Consensus 524 G~~~V~Y~~~gfleKNkD 541 (767)
T cd01386 524 GTNPVLYDVTGWLRRAKP 541 (767)
T ss_pred CCCceEecCCCHHHhcCC
Confidence 3 699999999999886
No 39
>KOG0164|consensus
Probab=97.02 E-value=0.00071 Score=69.98 Aligned_cols=177 Identities=20% Similarity=0.323 Sum_probs=113.0
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHhCCcccccccCCChhHHHHhhcCcchhhhhhhhhccCCCCChHHHHHHH
Q psy17848 141 FEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFIDFGLDLQPTIDLIDKPMGIMALLDEECWFPKATDRSFVEKL 220 (363)
Q Consensus 141 feQlcINyanE~Lq~~f~~~~f~~e~~~Y~~Egi~~~~i~~~~d~~~~ldli~~p~Gil~lLdee~~~~~~~d~~f~~kl 220 (363)
.+|.- ||-..|.+-.++..|.+--..- .++|.+...+- .-+- ..-.|++++...|. ++..|.+.|+-+.
T Consensus 332 ~~qA~--YaRDAlAKaiY~RlF~Wiv~rI-n~~i~~~~~~~------~~~~-~~Vigvldiygfei-f~~NSFEQfcINY 400 (1001)
T KOG0164|consen 332 VEQAS--YARDALAKAIYSRLFTWIVNRI-NRSIEVKGVIT------LRKG-NTVIGVLDIYGFEI-FQDNSFEQFCINY 400 (1001)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHhh-hhheecccccc------cccC-ceEEEEEEeeeEEe-ecCCcHHHHHHHH
Confidence 34443 8888888888888886543321 23333221110 0000 11248888888886 7888999998665
Q ss_pred HHhhcccc------------------ccccccccCCccceeeec-cCCcccccccccccccCC-CCCchHHHHHHHhhcc
Q psy17848 221 VQSHSQHA------------------KFKKTDFRGVADFAIVHY-AGKPMGIMALLDEECWFP-KATDRSFVEKLVQSHS 280 (363)
Q Consensus 221 ~~~~~~~~------------------~~~~~~~~~~~~~~~~~~-~~~~~gil~lldee~~~p-~~~d~~fl~~l~~~~~ 280 (363)
|+..-++. .|..++|. ++.+++++ +....||+++|||+|..| ..||.+|+++|.+..+
T Consensus 401 CNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YF--nN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~~~ 478 (1001)
T KOG0164|consen 401 CNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYF--NNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQKLK 478 (1001)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhc--CCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHHhh
Confidence 54332222 33444433 24466665 555679999999999999 5789999999999999
Q ss_pred CCCCCcccCCCCCccceeeeeccceeeccccchhhcCCchhHHHHHHHHhcCcHHHHhh
Q psy17848 281 QHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHI 339 (363)
Q Consensus 281 ~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gflekN~d~l~~~~~~ll~~S~~~~i~~l 339 (363)
.|++|.+.+.. +.+=+..| -.+.+.. -.+.+.+.+..++.+++|-+.+++
T Consensus 479 ~H~Hy~sr~~~-~~dksl~~----~~Fri~H----YAG~V~YsV~gFidKN~D~Lf~dl 528 (1001)
T KOG0164|consen 479 KHPHYTSRKLK-QTDKSLGF----SDFRITH----YAGDVTYSVEGFIDKNNDLLFQDL 528 (1001)
T ss_pred hCCcchhhhcc-ccccccCc----cceeEEE----eccceEEEEEeeeccCccHHHHHH
Confidence 99999875433 22222222 1222211 256688899999999999887765
No 40
>KOG0160|consensus
Probab=96.83 E-value=0.00076 Score=72.27 Aligned_cols=207 Identities=21% Similarity=0.311 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCcccCCCceEEEEeecccccccCcCcHHHHHhhhhhHHHHHHHHHhhhHHHHHHH
Q psy17848 90 AVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEY 169 (363)
Q Consensus 90 ~rdalak~LY~~LF~wiv~~iN~~L~~~~~~~~~~IgiLDi~GFE~~~~NsfeQlcINyanE~Lq~~f~~~~f~~e~~~Y 169 (363)
.+-.|-......++.||..+.+..-.. ..+--++ ..|-- -.-..|.++.+.+.|..
T Consensus 295 ~~a~Llg~~~~~l~~~L~~r~i~~~~e------~i~k~l~-----------~~qa~--~~rD~lak~iys~LFdw----- 350 (862)
T KOG0160|consen 295 TAAELLGCDEEALEQWLSKRKILTARE------SIVKPLT-----------LSQAV--KRRDALAKQLYSLLFDW----- 350 (862)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhcccc------eeecccC-----------HHHHH--HhhhhhHHHHHHHHHHH-----
Confidence 344666777889999999988874321 1111122 11111 12234556666666642
Q ss_pred HHhCCcccccccCCChhHHHHhhcCcchhhhhhhhhccCCCCChHHHH-----HHHHHhhccccc------cc--ccccc
Q psy17848 170 QREGIEWKFIDFGLDLQPTIDLIDKPMGIMALLDEECWFPKATDRSFV-----EKLVQSHSQHAK------FK--KTDFR 236 (363)
Q Consensus 170 ~~Egi~~~~i~~~~d~~~~ldli~~p~Gil~lLdee~~~~~~~d~~f~-----~kl~~~~~~~~~------~~--~~~~~ 236 (363)
.-+.|+-. +... +.. -....|++++...|+ +...+.+.|+ +||-++..+|.. |. .++|+
T Consensus 351 lV~~in~s-L~~~-~~~-----~~~~igVLDiYgFEs-F~~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws 422 (862)
T KOG0160|consen 351 LVAKINGS-LGAN-DPK-----AERFIGVLDIYGFES-FEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWS 422 (862)
T ss_pred HHHHhhcc-cccC-CCC-----ccceeeeehcccccc-cccCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccc
Confidence 22333221 1110 110 012348888888887 6666777775 455444444441 22 24555
Q ss_pred C---CccceeeeccCCcccccccccccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccch
Q psy17848 237 G---VADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWL 313 (363)
Q Consensus 237 ~---~~~~~~~~~~~~~~gil~lldee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gfl 313 (363)
+ ..+..+++..++|.|+++++||+|++|.++|.+|..+|.+ .+.. =.+|.++..=+....+
T Consensus 423 ~ief~dNq~~~~lie~~~Gi~~Llde~c~lp~~t~~~~a~KL~~------~~~~----------~~~f~kpr~~~~~f~v 486 (862)
T KOG0160|consen 423 GIEFRDNQECLDLIEKPLGILALLDEECMLPKGTDETLAQKLYQ------TLKR----------NKRFTKPRLSRTDFRV 486 (862)
T ss_pred cccCcCccchhhhhccccchhhccchhccCCCCCcchHHHHHHH------Hhcc----------CCccCCCCCCcCCccc
Confidence 5 3467888888889999999999999999999999999952 1221 1223333222223333
Q ss_pred hhcCCchhHHHHHHHHhcCcHHHHhhcccch
Q psy17848 314 MKNMDPLNENVVSLLQVSQDPFVAHIWKDAE 344 (363)
Q Consensus 314 ekN~d~l~~~~~~ll~~S~~~~i~~lf~~~~ 344 (363)
.--.+.+.++...++.+.++.+..++..-..
T Consensus 487 ~hyAg~v~y~~~~fL~knrd~v~~el~~ll~ 517 (862)
T KOG0160|consen 487 AHYAGDVTYDTEGFLEKNRDYVSDELIDLLL 517 (862)
T ss_pred ccccCccccchhhhccCCccccCHHHHhhhh
Confidence 4447789999999999999988887765433
No 41
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=95.29 E-value=0.0046 Score=66.18 Aligned_cols=125 Identities=25% Similarity=0.471 Sum_probs=68.5
Q ss_pred chhhhhhhhhccCCCCChHHHHHHH-----HHhhcccc------cc--ccccccC----Cccceeeec-cCCcccccccc
Q psy17848 196 MGIMALLDEECWFPKATDRSFVEKL-----VQSHSQHA------KF--KKTDFRG----VADFAIVHY-AGKPMGIMALL 257 (363)
Q Consensus 196 ~Gil~lLdee~~~~~~~d~~f~~kl-----~~~~~~~~------~~--~~~~~~~----~~~~~~~~~-~~~~~gil~ll 257 (363)
.||+++-..|+. ...+-+.|+.++ .+.+..+. .| ..++|.. .++-.|+++ ..+|.||+++|
T Consensus 366 IgILDi~GFE~~-~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lL 444 (689)
T PF00063_consen 366 IGILDIFGFENF-SVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLL 444 (689)
T ss_dssp EEEEEEE-B----SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHH
T ss_pred CcccCccccccc-cccccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHh
Confidence 377777778875 556677776333 32222211 11 1222222 123355665 45699999999
Q ss_pred cccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeee---eccceeeccccchhhcCCchhHHHHHHHHhcCcH
Q psy17848 258 DEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVH---YAGKVDYSAEKWLMKNMDPLNENVVSLLQVSQDP 334 (363)
Q Consensus 258 dee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H---~aG~V~Y~~~gflekN~d~l~~~~~~ll~~S~~~ 334 (363)
||||.+|+++|.+|++++...+ .. ..+.|.-.. --+.-...+..| .+.+.+++..++.++++.
T Consensus 445 dee~~~~~~sd~~fl~kl~~~~--~~--------~~~~~~~~~~~~~~~~~~F~I~Hy----aG~V~Y~v~gfleKNrD~ 510 (689)
T PF00063_consen 445 DEECLLPRGSDESFLEKLLKRH--SG--------KHPSFVKPRFSRSTSKSSFTIKHY----AGDVTYDVEGFLEKNRDP 510 (689)
T ss_dssp HHHCTSTTS-HHHHHHHHHHHH--TT--------TSTTEECTSSSTSSTTSCEEEEET----TEEEEEE-TTHHHHHHE-
T ss_pred hhhhhcccchhhHHHHHHHhhc--cc--------CCCcccccccccccCCCceEeecc----cCcceeccccccccccch
Confidence 9999999999999999997653 11 112332221 122233333333 445899999999988765
Q ss_pred H
Q psy17848 335 F 335 (363)
Q Consensus 335 ~ 335 (363)
+
T Consensus 511 l 511 (689)
T PF00063_consen 511 L 511 (689)
T ss_dssp S
T ss_pred H
Confidence 3
No 42
>KOG0163|consensus
Probab=93.25 E-value=0.054 Score=56.86 Aligned_cols=165 Identities=16% Similarity=0.277 Sum_probs=103.7
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHhCCcccccccCCChhHHHHhhcCcc---hhhhhhhhhccCCCCChHHHHHHHHHhh
Q psy17848 148 YTNEKLQQLFNHTMFILEQEEYQREGIEWKFIDFGLDLQPTIDLIDKPM---GIMALLDEECWFPKATDRSFVEKLVQSH 224 (363)
Q Consensus 148 yanE~Lq~~f~~~~f~~e~~~Y~~Egi~~~~i~~~~d~~~~ldli~~p~---Gil~lLdee~~~~~~~d~~f~~kl~~~~ 224 (363)
-+-+.|.+-.+++.|.+--... ...|+ ++++. |++++-..|- +...+.+.|+-++++..
T Consensus 419 n~RDALaKaiYSkLFD~lV~~i-NqsiP----------------Fe~St~fiGVLDiAGFEy-f~~NSFEQFCINyCNEK 480 (1259)
T KOG0163|consen 419 NARDALAKAIYSKLFDWLVGRI-NQSIP----------------FEKSTFFIGVLDIAGFEY-FAVNSFEQFCINYCNEK 480 (1259)
T ss_pred chHHHHHHHHHHHHHHHHHHHh-hcccc----------------cccccceeEEEeecccee-eecccHHHHHHHHHHHH
Confidence 4567777777777775422211 11111 23333 6666666654 66788999986666443
Q ss_pred ccccc-----------c-------ccccccCCccceeeec-cCCcccccccccccccCCCCCchHHHHHHHhhccCCCCC
Q psy17848 225 SQHAK-----------F-------KKTDFRGVADFAIVHY-AGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKF 285 (363)
Q Consensus 225 ~~~~~-----------~-------~~~~~~~~~~~~~~~~-~~~~~gil~lldee~~~p~~~d~~fl~~l~~~~~~~~~~ 285 (363)
-++.. | ..+.|.+ +.-|+.+ +.+..||+.+||||..+|+++++.|..+.|+.+..|-..
T Consensus 481 LQ~FFNerILkeEQElYekEGLnv~ei~f~D--NqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~HfRL 558 (1259)
T KOG0163|consen 481 LQKFFNERILKEEQELYEKEGLNVPEIEFTD--NQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHESNKNHFRL 558 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCceEecc--chhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHhhhcceee
Confidence 33220 1 1122222 2234444 667889999999999999999999999999988777554
Q ss_pred cccCCCCCccceeeeeccceeeccccchhh-cCCchhHHHHHHHHhcCcHHHHhh
Q psy17848 286 KKTDFRGVADFAIVHYAGKVDYSAEKWLMK-NMDPLNENVVSLLQVSQDPFVAHI 339 (363)
Q Consensus 286 ~~~~~~~~~~F~I~H~aG~V~Y~~~gflek-N~d~l~~~~~~ll~~S~~~~i~~l 339 (363)
..|+...- . .| .---+-+||+-+ -.+.+.++...++.++++.+-.+|
T Consensus 559 ~~PRkSkl---k-sH---R~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SL 606 (1259)
T KOG0163|consen 559 DLPRKSKL---K-SH---RELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSL 606 (1259)
T ss_pred cCCchhhh---h-hh---hhhccccceeeeecccceeechHHHHHhccHHHHHHH
Confidence 44432210 0 01 112356788764 578999999999999998877655
No 43
>KOG4229|consensus
Probab=66.57 E-value=3 Score=46.54 Aligned_cols=129 Identities=23% Similarity=0.437 Sum_probs=74.1
Q ss_pred chhhhhhhhhccCCCCChHHHHHHHHHhh-----cccc------cc--ccccccCC---ccceeeec-cCCccccccccc
Q psy17848 196 MGIMALLDEECWFPKATDRSFVEKLVQSH-----SQHA------KF--KKTDFRGV---ADFAIVHY-AGKPMGIMALLD 258 (363)
Q Consensus 196 ~Gil~lLdee~~~~~~~d~~f~~kl~~~~-----~~~~------~~--~~~~~~~~---~~~~~~~~-~~~~~gil~lld 258 (363)
.|++++...|+. .+.+-+.++..+.+.. .+|- +| ..++|+.. .+-.+++. ..+|+|++.++|
T Consensus 429 IgiLdiFgfE~f-~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liD 507 (1062)
T KOG4229|consen 429 IGILDIFGFENF-ERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLID 507 (1062)
T ss_pred eehhhhhcccch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheec
Confidence 478888888875 4556666653332111 1111 11 11233321 12345554 447999999999
Q ss_pred ccccCCCCCchHHHHHHHhhccCCCCCcccCCCCCccceeeeeccceeeccccchhhcCCchhHHHHHHHHhcCcHHHHh
Q psy17848 259 EECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAH 338 (363)
Q Consensus 259 ee~~~p~~~d~~fl~~l~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gflekN~d~l~~~~~~ll~~S~~~~i~~ 338 (363)
||+.+|+++|.+++.+++.. | .... ...|.=.+.++ ...+..| ...+-.++...+.+.+|.+-.+
T Consensus 508 ees~fP~~td~tl~~k~~~q---~---~~~~---~y~~~k~~~e~--~f~I~Hy----agkv~y~~~~flekNrD~~~~d 572 (1062)
T KOG4229|consen 508 EESRFPKATDQTLLLKLNMQ---H---GSNN---LYVFPKSRVET--VFGITHY----AGKVQYNIRGFLEKNRDTVRND 572 (1062)
T ss_pred ccCcCCchHHHHHHHHhhhh---h---hccc---ccccccccccc--eeeeeee----cceehhhhhhHHHhhhhhhhhh
Confidence 99999999999999998532 2 1111 11122222222 2223333 4558888899999988877655
Q ss_pred hc
Q psy17848 339 IW 340 (363)
Q Consensus 339 lf 340 (363)
+.
T Consensus 573 ~~ 574 (1062)
T KOG4229|consen 573 LV 574 (1062)
T ss_pred HH
Confidence 43
No 44
>KOG0162|consensus
Probab=53.63 E-value=5.9 Score=42.16 Aligned_cols=167 Identities=18% Similarity=0.272 Sum_probs=92.7
Q ss_pred cHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHhCCcccccccCCChhHHHHhhcCcchhhhhhhhhccCCCCChHHHHHH
Q psy17848 140 SFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFIDFGLDLQPTIDLIDKPMGIMALLDEECWFPKATDRSFVEK 219 (363)
Q Consensus 140 sfeQlcINyanE~Lq~~f~~~~f~~e~~~Y~~Egi~~~~i~~~~d~~~~ldli~~p~Gil~lLdee~~~~~~~d~~f~~k 219 (363)
.-||.| |+-+.|..-.+.+.|..--+ .|+-....+ +. --+.+.|||++...|- |.+.+.+.|+-+
T Consensus 343 Nv~QA~--~~RDAlakaiy~~lFD~lV~-----rvNkam~~~--~~-----~~~~sIGiLDIYGFEI-Fe~N~FEQ~CIN 407 (1106)
T KOG0162|consen 343 NVEQAS--YTRDALAKAIYARLFDWLVE-----RVNKAMQAF--KG-----SEEYSIGILDIYGFEI-FENNGFEQFCIN 407 (1106)
T ss_pred cHHHHH--HHHHHHHHHHHHHHHHHHHH-----HHHHHHhcC--CC-----ccccceeeEEeeeeee-cccCCHHHHHHH
Confidence 357887 88888888777777753222 111110001 00 0124569999999986 778888888744
Q ss_pred HHHhhcccc------------------ccccccccCCccceeeeccC--CcccccccccccccCCCCCchHHHHHHHhhc
Q psy17848 220 LVQSHSQHA------------------KFKKTDFRGVADFAIVHYAG--KPMGIMALLDEECWFPKATDRSFVEKLVQSH 279 (363)
Q Consensus 220 l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~--~~~gil~lldee~~~p~~~d~~fl~~l~~~~ 279 (363)
+.+...++. .|+.++|. ++-+++++++ .|.||+++||+.|..--+....-=+.+.+..
T Consensus 408 fVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYF--nNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrL 485 (1106)
T KOG0162|consen 408 FVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYF--NNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRL 485 (1106)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhc--CCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 432221111 33334433 2446666533 4789999999988422111111111111110
Q ss_pred cCCCCCcccCCCCCccceee-eeccceeeccccchhh-cCCchhHHHHHHHHhcCcHHHHhhc
Q psy17848 280 SQHAKFKKTDFRGVADFAIV-HYAGKVDYSAEKWLMK-NMDPLNENVVSLLQVSQDPFVAHIW 340 (363)
Q Consensus 280 ~~~~~~~~~~~~~~~~F~I~-H~aG~V~Y~~~gflek-N~d~l~~~~~~ll~~S~~~~i~~lf 340 (363)
...|+-+ ||- --..+|+-| -.+.+++++..+-.++++.+..+|.
T Consensus 486 -------------n~~~~s~phF~----~~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~Dli 531 (1106)
T KOG0162|consen 486 -------------NKLFGSHPHFE----SRSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLI 531 (1106)
T ss_pred -------------HHHhcCCCccc----cccCceEEEEeccceeeecccccccchhHHHHHHH
Confidence 0012221 331 125677765 4678999999999999998877764
No 45
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.91 E-value=37 Score=28.94 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=16.3
Q ss_pred HHHHHHHHHcCCCHHHHHH
Q psy17848 39 TVAQKIAKLLGLSITEMTK 57 (363)
Q Consensus 39 ~~~~~~a~LLgv~~~~L~~ 57 (363)
..+.++|+||||++++..+
T Consensus 124 ~vi~RvAeLLgV~~~d~V~ 142 (148)
T COG4103 124 HVIWRVAELLGVSPEDRVR 142 (148)
T ss_pred HHHHHHHHHhCCCHHHHHH
Confidence 4789999999999998743
No 46
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=26.95 E-value=73 Score=20.78 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=14.6
Q ss_pred HHHHHHHcCCCHHHHHHHh
Q psy17848 41 AQKIAKLLGLSITEMTKAF 59 (363)
Q Consensus 41 ~~~~a~LLgv~~~~L~~~l 59 (363)
...+|+.|||+...|..-|
T Consensus 21 ~~~aA~~Lgisr~tL~~kl 39 (42)
T PF02954_consen 21 VSKAARLLGISRRTLYRKL 39 (42)
T ss_dssp HHHHHHHHTS-HHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHH
Confidence 5689999999998887654
No 47
>PF02376 CUT: CUT domain; InterPro: IPR003350 A class, also called ONECUT, of homeodomain proteins. The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain (IPR001356 from INTERPRO), often found downstream of the CUT domain. Proteins display two modes of DNA binding, which hinge on the homeodomain and on the linker that separates it from the cut domain, and two modes of transcriptional stimulation, which hinge on the homeodomain [].; GO: 0003677 DNA binding; PDB: 1WH6_A 2D5V_A 2CSF_A 1X2L_A 2O49_A 2O4A_A 1YSE_A 1S7E_A 1WIZ_A 1WH8_A.
Probab=24.64 E-value=1.2e+02 Score=23.55 Aligned_cols=43 Identities=23% Similarity=0.359 Sum_probs=25.7
Q ss_pred HHHHHcCCCHHHHHHHhccceeeecceEEEeccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17848 43 KIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVN 108 (363)
Q Consensus 43 ~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~rdalak~LY~~LF~wiv~ 108 (363)
-|...||.+...|...|..++ | ......-.|.+|.|+++|+-.
T Consensus 32 Fa~~vL~rsqgtlsdlL~~PK----------p-------------W~~L~~~gre~y~RM~nWL~~ 74 (87)
T PF02376_consen 32 FAKKVLNRSQGTLSDLLRKPK----------P-------------WNKLKPKGREPYIRMYNWLSL 74 (87)
T ss_dssp HHHHTTSS-HHHHHHHHHSCC----------T-------------TCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHhccChhHHHHHhCCCC----------C-------------HHHcCccccHHHHHHHHHhcC
Confidence 344567777777776665331 1 112333568899999999843
No 48
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=23.80 E-value=3.2e+02 Score=27.36 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=47.0
Q ss_pred ccccCChHHHHHHHHHcCCCHHHHHHHhccc--eeeecceEEEeccc--hhhhccChhhHHHHHHHHHHHHHHHHHHHHH
Q psy17848 32 QASLPDNTVAQKIAKLLGLSITEMTKAFLKP--RIKVGRDFVTKSQT--KEQWFKNDNKVEFAVEAISKACYERMFRWLV 107 (363)
Q Consensus 32 ~~~i~~~~~~~~~a~LLgv~~~~L~~~l~~~--~~~~~~~~~~~~~~--~~~~~~~~~~a~~~rdalak~LY~~LF~wiv 107 (363)
.|.-.....++.+|+-||++.+++.+.-... .++++. .++.+.. +.+....+...++..-.++.+++.+.+..++
T Consensus 259 ~CAAGtGrFLE~~A~~Lgv~v~E~~~~A~~~~~~v~i~S-~CaVF~eSevi~~~~~G~~~EdI~AGl~~Sv~~~v~~~~~ 337 (396)
T COG1924 259 KCAAGTGRFLEVIARRLGVDVEELGKLALKATPPVKINS-RCAVFAESEVISALAEGASPEDILAGLAYSVAENVAEKVI 337 (396)
T ss_pred ccccccchHHHHHHHHhCCCHHHHHHHHhcCCCCcccCC-eeEEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445679999999999999998754432 233322 2222221 1111112222566777888888888888776
Q ss_pred HHhh
Q psy17848 108 NRIN 111 (363)
Q Consensus 108 ~~iN 111 (363)
.+++
T Consensus 338 ~~~~ 341 (396)
T COG1924 338 KRVD 341 (396)
T ss_pred hccC
Confidence 6554
No 49
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=21.98 E-value=1.3e+02 Score=21.33 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=23.7
Q ss_pred cccCChHHHHHHHHHcCCCHHHHHHHhc
Q psy17848 33 ASLPDNTVAQKIAKLLGLSITEMTKAFL 60 (363)
Q Consensus 33 ~~i~~~~~~~~~a~LLgv~~~~L~~~l~ 60 (363)
..+.++..+..-|+-|||+.++|..++-
T Consensus 15 I~~~e~~ev~ywa~~~gvt~~~L~~AV~ 42 (57)
T PF12244_consen 15 IDLSEPYEVRYWAKRFGVTEEQLREAVR 42 (57)
T ss_pred cCCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 4456777899999999999999999873
No 50
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=21.78 E-value=81 Score=21.27 Aligned_cols=21 Identities=38% Similarity=0.414 Sum_probs=17.5
Q ss_pred cCChHHHHHHHHHcCCCHHHH
Q psy17848 35 LPDNTVAQKIAKLLGLSITEM 55 (363)
Q Consensus 35 i~~~~~~~~~a~LLgv~~~~L 55 (363)
.++.+.+..+|+.||++++.|
T Consensus 35 ~~~~~~~~~ia~~l~~~~~~l 55 (55)
T PF01381_consen 35 NPSLDTLKKIAKALGVSPEYL 55 (55)
T ss_dssp TSBHHHHHHHHHHHTSEHHHH
T ss_pred CCCHHHHHHHHHHHCCCHHHC
Confidence 356778999999999998875
No 51
>PHA01976 helix-turn-helix protein
Probab=20.48 E-value=1.1e+02 Score=21.62 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=18.6
Q ss_pred cCChHHHHHHHHHcCCCHHHHH
Q psy17848 35 LPDNTVAQKIAKLLGLSITEMT 56 (363)
Q Consensus 35 i~~~~~~~~~a~LLgv~~~~L~ 56 (363)
.++.+.+..+|+.|||+.+.|.
T Consensus 41 ~p~~~~l~~ia~~l~v~~~~l~ 62 (67)
T PHA01976 41 LPNLKTLLRLADALGVTLDWLC 62 (67)
T ss_pred CCCHHHHHHHHHHHCcCHHHHh
Confidence 4567789999999999999874
No 52
>COG2522 Predicted transcriptional regulator [General function prediction only]
Probab=20.29 E-value=99 Score=25.57 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=18.1
Q ss_pred HHHHHHcCCCHHHHHHHhccc
Q psy17848 42 QKIAKLLGLSITEMTKAFLKP 62 (363)
Q Consensus 42 ~~~a~LLgv~~~~L~~~l~~~ 62 (363)
.++|+|||+.+....+.|-.+
T Consensus 26 ~~iA~LLGltqaAVS~Yls~k 46 (119)
T COG2522 26 YRIAKLLGLTQAAVSQYLSGK 46 (119)
T ss_pred HHHHHHhCCCHHHHHHHHccC
Confidence 579999999999999988644
No 53
>PF12728 HTH_17: Helix-turn-helix domain
Probab=20.10 E-value=1.1e+02 Score=20.36 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=18.4
Q ss_pred HHHHHHHcCCCHHHHHHHhccce
Q psy17848 41 AQKIAKLLGLSITEMTKAFLKPR 63 (363)
Q Consensus 41 ~~~~a~LLgv~~~~L~~~l~~~~ 63 (363)
.+.+|++|||+...+.+.+-...
T Consensus 4 ~~e~a~~l~is~~tv~~~~~~g~ 26 (51)
T PF12728_consen 4 VKEAAELLGISRSTVYRWIRQGK 26 (51)
T ss_pred HHHHHHHHCcCHHHHHHHHHcCC
Confidence 46799999999999888775443
Done!