RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17848
(363 letters)
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin
II mediates cortical contraction in cell motility, and
is the motor in smooth and skeletal muscle. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 693
Score = 493 bits (1271), Expect = e-171
Identities = 175/357 (49%), Positives = 219/357 (61%), Gaps = 67/357 (18%)
Query: 8 AIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVG 67
+IF+IV+A++ G+++FKQ + +QA L A K A LLG++ ++ KA L PRIKVG
Sbjct: 267 SIFKIVAAILHLGNIKFKQRQREEQAELDGTEEADKAAHLLGVNSADLLKALLHPRIKVG 326
Query: 68 RDFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIGI 127
R++VTK Q EQ V F+V A++KA YER+F WLV RIN++LD TK+Q A FIG+
Sbjct: 327 REWVTKGQNVEQ-------VSFSVGALAKALYERLFLWLVKRINKTLD-TKQQRAYFIGV 378
Query: 128 LDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFIDFGLDLQP 187
LD+AGFEIF+ NSFEQLCINYTNEKLQQ FNH MF+LEQEEYQREGIEW FIDFGLDLQP
Sbjct: 379 LDIAGFEIFDFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQP 438
Query: 188 TIDLIDKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYA 247
TIDLI EK
Sbjct: 439 TIDLI-------------------------EK---------------------------- 445
Query: 248 GKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKT-DFRGVADFAIVHYAGKVD 306
PMGI++LLDEEC FPKATD++FVEKL +H +KFKK + A F++VHYAG VD
Sbjct: 446 -NPMGILSLLDEECVFPKATDKTFVEKLYDNHLGKSKFKKPKKGKAKAHFSLVHYAGTVD 504
Query: 307 YSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIVGMAQQAMSDTQFGARTR 363
Y+ + WL KN DPLN+NVV LL+ S D VA ++KD G + +
Sbjct: 505 YNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAE----ASGDGGGGGGKKKK 557
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain).
Length = 679
Score = 382 bits (984), Expect = e-128
Identities = 152/362 (41%), Positives = 207/362 (57%), Gaps = 66/362 (18%)
Query: 7 RAIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKV 66
R+IFR+++A++ G+++FKQ++N +QA + D + IA LLG+ E+ KA LK RIK
Sbjct: 254 RSIFRVLAAILHLGNIKFKQDQNEEQAVVEDTEELEIIAGLLGVDPEELEKALLKRRIKT 313
Query: 67 GRDFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIG 126
GR+ VTK Q EQ +A +A++KA Y R+F W+V +IN +L ++ A+FIG
Sbjct: 314 GRETVTKPQNVEQ-------ARYARDALAKAIYSRLFDWIVGKINEALSAKLQKAAAFIG 366
Query: 127 ILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFIDFGLDLQ 186
+LD+ GFEIFE NSFEQLCINY NEKLQQ FNH MF LEQEEY REGI W FID+GLD Q
Sbjct: 367 VLDIYGFEIFEKNSFEQLCINYANEKLQQFFNHHMFKLEQEEYVREGIAWTFIDYGLDNQ 426
Query: 187 PTIDLIDKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHY 246
IDL +EK
Sbjct: 427 ACIDL-------------------------IEK--------------------------- 434
Query: 247 AGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQ-HAKFKKTDF-RGVADFAIVHYAGK 304
KP GI++LLDEEC FPKATD++F+EKL+ + S H F K F +G F + HYAG
Sbjct: 435 --KPPGILSLLDEECRFPKATDQTFLEKLLDTFSSKHPHFSKPRFGQGDTSFTVKHYAGD 492
Query: 305 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEI---VGMAQQAMSDTQFGAR 361
V+Y+A +L KN DPL ++++SLL+ S DP V ++ + E+ + A G
Sbjct: 493 VEYNATGFLEKNKDPLFDDLISLLKSSSDPLVLELFPEEELDEEEFAGRYARLGCGKGKD 552
Query: 362 TR 363
+
Sbjct: 553 GK 554
>gnl|CDD|214580 smart00242, MYSc, Myosin. Large ATPases. ATPase; molecular motor.
Muscle contraction consists of a cyclical interaction
between myosin and actin. The core of the myosin
structure is similar in fold to that of kinesin.
Length = 677
Score = 368 bits (948), Expect = e-123
Identities = 136/350 (38%), Positives = 185/350 (52%), Gaps = 66/350 (18%)
Query: 1 MPPPTVRAIFRIVSAVMLFGSMQFKQERNSDQASLPDNT-VAQKIAKLLGLSITEMTKAF 59
+IF+I++A++ G+++F++ RN + AS + A+LLG+ E+ KA
Sbjct: 254 FSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVKDKEELSNAAELLGVDPEELEKAL 313
Query: 60 LKPRIKVGRDFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKR 119
K +IK G + +TK EQ A +A++KA Y R+F WLV RIN+SL K
Sbjct: 314 TKRKIKTGGEVITKPLNVEQ-------ALDARDALAKALYSRLFDWLVKRINQSLS-FKD 365
Query: 120 QGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFI 179
FIG+LD+ GFEIFE+NSFEQLCINY NEKLQQ FN +F LEQEEY+REGI+W FI
Sbjct: 366 GSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFI 425
Query: 180 DFGLDLQPTIDLI-DKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGV 238
DF D Q IDLI KP GI++LLDEEC FPK TD++F+EKL Q H +H F K +G
Sbjct: 426 DFF-DNQDCIDLIEKKPPGILSLLDEECRFPKGTDQTFLEKLNQHHKKHPHFSKPKKKGR 484
Query: 239 ADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAI 298
+F I HYAG
Sbjct: 485 TEFIIKHYAGD------------------------------------------------- 495
Query: 299 VHYAGKVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIVGM 348
V Y +L KN D L+++++ LLQ S++P +A ++
Sbjct: 496 VTY------DVTGFLEKNKDTLSDDLIELLQSSKNPLIASLFPSGVSNAG 539
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 300 bits (769), Expect = 7e-92
Identities = 137/343 (39%), Positives = 188/343 (54%), Gaps = 66/343 (19%)
Query: 4 PTVRAIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPR 63
IF+I++A++ G+++FK++RN A DN+V K LLG+ + K +K +
Sbjct: 318 EEQDQIFKILAAILHIGNIEFKEDRN-GAAIFSDNSVLDKACYLLGIDPSLFVKWLVKRQ 376
Query: 64 IKVGRDFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGAS 123
IK G +++ EQ ++++KA Y +F W+V+RIN+SLD + +
Sbjct: 377 IKTGGEWIVVPLNLEQ-------ALAIRDSLAKALYSNLFDWIVDRINKSLDHSAAAS-N 428
Query: 124 FIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFIDFGL 183
FIG+LD+ GFEIFE NSFEQLCINYTNEKLQQ FN MF LEQEEY +EGIEW FID+
Sbjct: 429 FIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDY-F 487
Query: 184 DLQPTIDLIDK--PMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADF 241
D QP IDLI+K P+GI++LLDEEC P ATD SF KL Q
Sbjct: 488 DNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQR------------------ 529
Query: 242 AIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHY 301
K ++ KFKK+ FR F + HY
Sbjct: 530 ---------------------LNKNSNP--------------KFKKSRFRDNK-FVVKHY 553
Query: 302 AGKVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAE 344
AG V+Y E +L KN DPLN++++ LL+ S + FV+ ++ D E
Sbjct: 554 AGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEE 596
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 679
Score = 284 bits (728), Expect = 4e-90
Identities = 130/337 (38%), Positives = 174/337 (51%), Gaps = 67/337 (19%)
Query: 6 VRAIFRIVSAVMLFGSMQFKQERNSDQASL--PDNTVAQKIAKLLGLSITEMTKAFLKPR 63
+ +IFRI++A++ G+++FK Q + + V K A+LLGL E+ +A
Sbjct: 251 IESIFRILAAILHLGNIEFKSVGGEGQEAAEVKNTEVLSKAAELLGLDPEELEEALTYKV 310
Query: 64 IKVGRDFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGAS 123
KVG + +T TKE+ + ++++KA Y R+F W+V+RIN SL K +
Sbjct: 311 TKVGGEVITIPLTKEE-------AVDSRDSLAKALYSRLFDWIVSRINSSLK-PKDGRSL 362
Query: 124 FIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFIDFGL 183
FIGILD+ GFEIFE NSFEQLCINY NEKLQQ FN +F LEQEEYQ EGI+W+ IDF
Sbjct: 363 FIGILDIFGFEIFEKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFT- 421
Query: 184 DLQPTIDLID-KPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFA 242
D Q IDLI+ KP G+++LLDEEC FPK TD +F+EKL + F
Sbjct: 422 DNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKLKSNNAFY----------- 470
Query: 243 IVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYA 302
K F I HYA
Sbjct: 471 -------------------PAKKNAPTEFT-------------------------IKHYA 486
Query: 303 GKVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHI 339
G V Y A +L KN D L+ +VSLL+ S +PF+ +
Sbjct: 487 GDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIREL 523
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins. Myosins
V transport a variety of intracellular cargo
processively along actin filaments, such as membraneous
organelles and mRNA. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 691
Score = 245 bits (628), Expect = 2e-75
Identities = 117/346 (33%), Positives = 183/346 (52%), Gaps = 64/346 (18%)
Query: 9 IFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGR 68
IF++++A++ G+++ + RN + P + Q +LLG+ +++ K +K +I
Sbjct: 259 IFKLLAALLHLGNIEIEATRNDSSSISPKDENLQIACELLGVDASDLRKWLVKRQIVTRS 318
Query: 69 DFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLD--RTKRQGASFIG 126
+ + K TKEQ A +A++K Y ++F W+V+ IN+SL+ K++ SFIG
Sbjct: 319 EKIVKPLTKEQ-------AIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIG 371
Query: 127 ILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFIDFGLDLQ 186
+LD+ GFE FE NSFEQ CINY NEKLQQ FN +F LEQEEY +EGIEW FIDF D Q
Sbjct: 372 VLDIYGFETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFY-DNQ 430
Query: 187 PTIDLIDKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHY 246
P IDLI+ +GI++LLDEEC PK +D S+ +KL +++ K K
Sbjct: 431 PCIDLIESKLGILSLLDEECRLPKGSDESWAQKL---YNKLPKKK--------------- 472
Query: 247 AGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVD 306
+ F+K F G F + H+A V+
Sbjct: 473 -----------------------------------NPHFEKPRF-GQTSFTVKHFADDVE 496
Query: 307 YSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIVGMAQQA 352
Y + +L KN D +++ + +L+ S++PF+ + AE+ + +
Sbjct: 497 YDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELASSSSSS 542
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 674
Score = 235 bits (601), Expect = 2e-71
Identities = 114/352 (32%), Positives = 164/352 (46%), Gaps = 72/352 (20%)
Query: 1 MPPPTVRAIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFL 60
IFRIV+A++ G++QF E A + D V A LLG+ +E+ KA
Sbjct: 248 FSEDEQDEIFRIVAAILHLGNVQF-AENGDGAAVISDKDVLDFAAYLLGVDPSELEKALT 306
Query: 61 KPRIKVGR----DFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDR 116
I+ G + EQ + +A++KA Y R+F WLV+RIN++L
Sbjct: 307 SRTIETGGGGRGEVYDVPLNVEQ-------AAYTRDALAKAIYSRLFDWLVSRINKALQV 359
Query: 117 TKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEW 176
IG+LD+ GFEIF+ NSFEQ CINY NEKLQQ+F EQEEY REGI+W
Sbjct: 360 KSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKW 419
Query: 177 KFIDFGLDLQPTIDLID--KPMGIMALLDEECWFP-KATDRSFVEKLVQSHSQHAKFKKT 233
I++ + + DLI+ +P GI ++LD+ C P + TD++F+EKL + S H
Sbjct: 420 TPIEY-FNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSSHP----- 473
Query: 234 DFRGVADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGV 293
HS H +FR
Sbjct: 474 ---------------------------------------------HSDHFSSGSDEFR-- 486
Query: 294 ADFAIVHYAGKVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEI 345
I HYAG V YS E + KN D L ++++ L+Q S +PF+ ++ +
Sbjct: 487 ----IKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSD 534
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI
myosin, involved in organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 674
Score = 233 bits (595), Expect = 1e-70
Identities = 115/334 (34%), Positives = 164/334 (49%), Gaps = 69/334 (20%)
Query: 8 AIFRIVSAVMLFGSMQFKQERNSDQASLPDNTV---AQKIAKLLGLSITEMTKAFLKPRI 64
AIFR+V+A++ G+++F + D + L D + A+LL + A K +
Sbjct: 257 AIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVM 316
Query: 65 KVGRDFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASF 124
+ +TK + E + +A++K Y R+F WLVN+IN S+ + S
Sbjct: 317 VTPEEVITKPLDPD-------SAELSRDALAKTIYSRLFDWLVNKINSSIGQDPDS-KSL 368
Query: 125 IGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFIDFGLD 184
IG+LD+ GFE F+ NSFEQ CIN TNEKLQQ FN +F +EQEEY +E I+W +I+F +D
Sbjct: 369 IGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEF-VD 427
Query: 185 LQPTIDLIDK-PMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAI 243
Q +DLI+K P GI+ALLDE C FPK+T +F +KL Q+ H +F+K
Sbjct: 428 NQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFEK----------- 476
Query: 244 VHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAG 303
PK R+ F I HYAG
Sbjct: 477 --------------------PK-LSRT------------------------AFTIDHYAG 491
Query: 304 KVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVA 337
V Y +++L KN D + +LL S FVA
Sbjct: 492 DVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVA 525
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins.
Myosins in this group have been associated with
functions in sensory systems such as vision and hearing.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 671
Score = 195 bits (498), Expect = 8e-57
Identities = 105/359 (29%), Positives = 167/359 (46%), Gaps = 66/359 (18%)
Query: 1 MPPPTVRAIFRIVSAVMLFGSMQFKQER--NSDQASLPDNTVAQKIAKLLGLSITEMTKA 58
+ IF++++A++ G+++F+ N + D Q++A+LLG+ I ++ A
Sbjct: 245 FTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDDTPNLQRVAQLLGVPIQDLMDA 304
Query: 59 FLKPRIKVGRDFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTK 118
I + V ++EQ +A K Y R+F W+V +IN ++ +
Sbjct: 305 LTSRTIFTRGETVVTPLSREQ-------AVDVRDAFVKGIYGRLFVWIVRKINAAIYKPV 357
Query: 119 RQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKF 178
+Q + IG+LD+ GFE F++NSFEQLCIN+ NE LQQ F +F LEQEEY E I W+
Sbjct: 358 QQSRNSIGVLDIFGFENFDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQH 417
Query: 179 IDFGLDLQPTIDLID-KPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRG 237
I+F +D Q +DLI KP+ IM+L+DEE FPK TD++ +EKL H H+ + K
Sbjct: 418 IEF-VDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHSQHGLHSNYLKPKSTQ 476
Query: 238 VADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFA 297
F I H+AG
Sbjct: 477 ETQFGINHFAG------------------------------------------------- 487
Query: 298 IVHYAGKVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIVGMAQQAMSDT 356
+V Y +L KN D + ++ L+Q S++ F+ I++ +G + T
Sbjct: 488 VVFY------DTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEMGAETRKKKPT 540
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type
VIII myosins, a subgroup which has been associated with
endocytosis, cytokinesis, cell-to-cell coupling and
gating at plasmodesmata. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 190 bits (483), Expect = 1e-54
Identities = 95/242 (39%), Positives = 143/242 (59%), Gaps = 12/242 (4%)
Query: 9 IFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGR 68
+F +++AV+ G++ F N + + AKL+G +I ++ A ++ V
Sbjct: 258 VFAMLAAVLWLGNVSFTVIDNENHVEPVADEALSTAAKLIGCNIEDLMLALSTRKMHVNN 317
Query: 69 DFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIGIL 128
D + + T +Q A +A++K+ Y +F WLV +IN+SL+ KR+ I IL
Sbjct: 318 DNIVQKLTLQQAID-------ARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISIL 370
Query: 129 DMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFIDFGLDLQPT 188
D+ GFE F+ NSFEQ CINY NE+LQQ FN +F LEQEEY+ +GI+W ++F D Q
Sbjct: 371 DIYGFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEF-EDNQEC 429
Query: 189 IDLIDK-PMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYA 247
+DL +K P+G+++LLDEE FP ATD +F KL Q ++ F+ RG A F + HYA
Sbjct: 430 LDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKTNSCFRGE--RGGA-FTVRHYA 486
Query: 248 GK 249
G+
Sbjct: 487 GE 488
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins.
Myosin III has been shown to play a role in the vision
process in insects and in hearing in mammals. Myosin
III, an unconventional myosin, does not form dimers.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 653
Score = 176 bits (449), Expect = 5e-50
Identities = 106/335 (31%), Positives = 163/335 (48%), Gaps = 73/335 (21%)
Query: 6 VRAIFRIVSAVMLFGSMQFKQ---ERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLKP 62
V +++RI++A++ G ++F E +D++ + + + A LL + E+ +A
Sbjct: 256 VGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSNVAALENAASLLCIRSDELQEALTSH 315
Query: 63 RIKVGRDFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGA 122
+ + + + T E K A +A++KA Y R+F W+VNRIN L +
Sbjct: 316 CVVTRGETIVRHNTVE-------KATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASN 368
Query: 123 S----FIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKF 178
S +GILD+ GFE F+ NSFEQLCIN NE++Q FN +F EQ+EY EG++ +
Sbjct: 369 SSDQLNVGILDIFGFENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARL 428
Query: 179 IDFGLDLQPTIDL-IDKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRG 237
+++ D +P +D+ + KP+G++ALLDEE FP+ATD++ VEK K F
Sbjct: 429 VEYE-DNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKF------EDNLKSKFF-- 479
Query: 238 VADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFA 297
W PK + S F
Sbjct: 480 ------------------------WRPKRVELS-------------------------FG 490
Query: 298 IVHYAGKVDYSAEKWLMKNMDPLNENVVSLLQVSQ 332
I HYAGKV Y+A +L KN D L ++V LL+ SQ
Sbjct: 491 IHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSSQ 525
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins. In
vertebrates, myosin XV appears to be expressed in
sensory tissue and play a role in hearing. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 168 bits (426), Expect = 1e-46
Identities = 95/245 (38%), Positives = 139/245 (56%), Gaps = 14/245 (5%)
Query: 8 AIFRIVSAVMLFGSMQF-KQERNSDQ-ASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIK 65
+IFRI+++++ G++ F K+E ++ + AS+ Q +A+LL +S + KA +
Sbjct: 253 SIFRILASILHLGNVYFEKRETDAQEVASVVSAREIQAVAELLQISPEGLQKAITFKVTE 312
Query: 66 VGRDFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFI 125
R+ + T E A +AI+K Y +F WL+ R+N + + Q I
Sbjct: 313 TRREKIFTPLTVESAVD-------ARDAIAKVLYALLFNWLITRVNALV--SPTQDTLSI 363
Query: 126 GILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFIDFGLDL 185
ILD+ GFE NSFEQLCINY NE LQ LFN +F EQEEY RE ++W I F D
Sbjct: 364 AILDIYGFEDLSFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFA-DN 422
Query: 186 QPTIDLID-KPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIV 244
QP I+LI KP GI+ +LD++C FP+ATD +F++K H + + K + +F I
Sbjct: 423 QPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCHYHHGANPLYSKPKM-PLPEFTIK 481
Query: 245 HYAGK 249
HYAGK
Sbjct: 482 HYAGK 486
Score = 82.3 bits (203), Expect = 4e-17
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Query: 247 AGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVD 306
+ KP GI+ +LD++C FP+ATD +F++K H + + K + +F I HYAGKV
Sbjct: 430 SLKPYGILRILDDQCCFPQATDHTFLQKCHYHHGANPLYSKPKM-PLPEFTIKHYAGKVT 488
Query: 307 YSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWK 341
Y K+L KN D + ++V+ L S+ VAH++
Sbjct: 489 YQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFS 523
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins. Myosin
VI is a monomeric myosin, which moves towards the
minus-end of actin filaments, in contrast to most other
myosins. It has been implicated in endocytosis,
secretion, and cell migration. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the
minus end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 717
Score = 166 bits (423), Expect = 4e-46
Identities = 109/338 (32%), Positives = 163/338 (48%), Gaps = 67/338 (19%)
Query: 9 IFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKI---AKLLGLSITEMTKAFLKPRIK 65
+FR+V+ V+ G++ F++ ++ N Q + A+LLGL ++ + L R+
Sbjct: 284 LFRVVAGVLHLGNIDFEEAGSTSGGCNVKNQSEQSLEYCAELLGLDQDDL-RVSLTTRVM 342
Query: 66 VGRDFVTKSQTKEQWFKNDNKVEFAV---EAISKACYERMFRWLVNRINRSLDRTKRQGA 122
+ T K K KVE A +A++KA Y +F +V+R+N+ +
Sbjct: 343 L----TTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFET--SS 396
Query: 123 SFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFIDFG 182
+FIG+LD+AGFE FE NSFEQ CINY NEKLQQ FN + EQE YQREG+ + +
Sbjct: 397 NFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHY- 455
Query: 183 LDLQPTIDLID-KPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADF 241
+D Q IDLI+ K GI+ +LDEE P+ +D+ F + Q H H FR
Sbjct: 456 VDNQDCIDLIEAKLNGILDILDEENRLPQPSDQHFTSVVHQKHKDH-------FR----- 503
Query: 242 AIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVAD---FAI 298
+ I P+ K K R + D F I
Sbjct: 504 ---------LTI----------PR------------------KSKLAVHRNLRDDEGFII 526
Query: 299 VHYAGKVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFV 336
H+AG V Y +++ KN D L+ ++ SL+ S+D F+
Sbjct: 527 RHFAGAVCYETTQFVEKNNDALHMSLESLICESKDKFL 564
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins. Myosin
IX is a processive single-headed motor, which might play
a role in signalling. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 692
Score = 160 bits (406), Expect = 7e-44
Identities = 109/352 (30%), Positives = 163/352 (46%), Gaps = 75/352 (21%)
Query: 3 PPTVRAIFRIVSAVMLFGSMQFKQER--NSDQASLPDN-TVAQKIAKLLGLSITEMTKAF 59
T + IF ++SAV+L G++ +K+ + D++ N V +++LL + + +A
Sbjct: 258 AATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGNPEVVDLLSQLLKVKRETLMEAL 317
Query: 60 LKPRIKVGRDFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKR 119
K R VT ++T + + A +A++K Y +F W+V RIN +L
Sbjct: 318 TKKRT------VTVNETLILPYSLSEAIT-ARDAMAKCLYSALFDWIVLRINHALLNKDD 370
Query: 120 QGAS--FIGILDMAGFEIFE-LNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEW 176
S IG+LD+ GFE F NSFEQLCINY NE+LQ FN +F LEQEEYQ EGI W
Sbjct: 371 VAVSGLSIGVLDIFGFEDFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITW 430
Query: 177 KFIDFGLDLQPTIDLIDKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFR 236
I++ TD +L
Sbjct: 431 TNIEY------------------------------TDNVGCIQLFSK------------- 447
Query: 237 GVADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADF 296
KP G++ LLDEE FP AT ++ + K Q H + ++ + A F
Sbjct: 448 ------------KPTGLLYLLDEESNFPHATSQTLLAKFNQQHKDNKYYEGPQVKEPA-F 494
Query: 297 AIVHYAGKVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIVGM 348
I HYAGKV Y + + KNMD + +++V+LL+ S +V E++GM
Sbjct: 495 IIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYV------RELIGM 540
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional.
Length = 821
Score = 135 bits (342), Expect = 7e-35
Identities = 85/344 (24%), Positives = 157/344 (45%), Gaps = 70/344 (20%)
Query: 9 IFRIVSAVMLFGSMQFKQERN---SDQASLPDNT--VAQKIAKLLGLSITEMTKAFLKPR 63
IF I+S V+L G+++ + + +D A++ D + V + +LL L LK
Sbjct: 351 IFSILSGVLLLGNVEIEGKEEGGLTDAAAISDESLEVFNEACELLFLD-----YESLKKE 405
Query: 64 IKVGRDFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGAS 123
+ V + + + W K+++++ +++SKA YE++F W++ +N +++
Sbjct: 406 LTVKVTYAGNQKIEGPWSKDESEM--LKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKV- 462
Query: 124 FIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFIDFGL 183
FIG+LD+ GFE+F+ NS EQL IN TNE LQ+ F +F E + Y+ EGI + +++
Sbjct: 463 FIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEY-T 521
Query: 184 DLQPTIDLI-DKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFA 242
+ IDL+ K ++++L+++C P TD FV + + K+K
Sbjct: 522 SNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPKYKPAK-------- 573
Query: 243 IVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYA 302
++++FV I H
Sbjct: 574 ----------------------VDSNKNFV-------------------------IKHTI 586
Query: 303 GKVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIV 346
G + Y A +L KN D L +V +++ S +P V +++ E+
Sbjct: 587 GDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVE 630
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 93.0 bits (231), Expect = 1e-20
Identities = 67/249 (26%), Positives = 109/249 (43%), Gaps = 38/249 (15%)
Query: 3 PPTVRAIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLK- 61
RAI+R+++A+ G+ + Q + P AQK A+LLG + E++ A K
Sbjct: 250 EGEQRAIWRVLAAIYHLGAAGATKVAGRKQFARP--EWAQKAAELLGCPLEELSSATFKH 307
Query: 62 --PRIKVGRDFVTKSQTKEQWFKNDNKVEFA---VEAISKACYERMFRWLVNRINRSLDR 116
+ + A +E ++ Y +F +V+ INRS+
Sbjct: 308 TLRGGINQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISS 367
Query: 117 TKRQGASFIGILDMAGFEIFELN----------SFEQLCINYTNEKLQQLFNHTMFILEQ 166
+ AS I ++D GF+ N +FE+LC NY E+LQ LF+H F+
Sbjct: 368 SHHSIAS-IMLVDTPGFQ----NPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPL 422
Query: 167 EEYQREGIEWKFIDFGLDLQPTIDLIDK---------------PMGIMALLDEECWFPKA 211
E Y EG+E +F T+ L+D+ G++ LLDEE P +
Sbjct: 423 ERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLLDEEALVPGS 482
Query: 212 TDRSFVEKL 220
+D +F+E+L
Sbjct: 483 SDDTFLERL 491
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain. These
ATPases belong to the P-loop NTPase family and provide
the driving force in myosin and kinesin mediated
processes.
Length = 186
Score = 33.3 bits (76), Expect = 0.11
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 113 SLDRTKRQGASFIGILDMAGFEIFELNSFEQ 143
S + G I ++D+AG E + + E
Sbjct: 99 SATEQPKVG--KINLVDLAGSERIDFSGAEG 127
>gnl|CDD|215462 PLN02857, PLN02857, octaprenyl-diphosphate synthase.
Length = 416
Score = 29.8 bits (67), Expect = 2.4
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
Query: 160 TMFILEQEEYQREGIEWKFIDFGLDLQPTIDLIDKPMGI------------MALLDEECW 207
+F LE+E RE IE +F + G L+ I+L+++ GI +A+ + EC
Sbjct: 337 VIFALEKEPELREIIESEFCEEG-SLEEAIELVNEGGGIERAQELAKEKADLAIQNLEC- 394
Query: 208 FPKATDRSFVEKLVQ 222
P+ RS +E +V
Sbjct: 395 LPRGAFRSSLEDMVD 409
>gnl|CDD|218505 pfam05216, UNC-50, UNC-50 family. Gmh1p from S. cerevisiae is
located in the Golgi membrane and interacts with ARF
exchange factors.
Length = 232
Score = 28.4 bits (64), Expect = 5.6
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 51 SITEMTKAFLKPRIKVGRDFVTKSQTKEQWFKND 84
++ +M + P+ KV R + QTK QW ++D
Sbjct: 22 ALWQMFYLCVNPK-KVYRSTYYRKQTKNQWARDD 54
>gnl|CDD|223913 COG0843, CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit
1 [Energy production and conversion].
Length = 566
Score = 28.0 bits (63), Expect = 9.7
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 238 VADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSH 279
V F V G G+ A + WFPK T R E+L + H
Sbjct: 377 VGHFHYVLGGGVVFGLFAGIYY--WFPKMTGRMLNERLGKLH 416
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.135 0.404
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,378,086
Number of extensions: 1749921
Number of successful extensions: 1577
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1503
Number of HSP's successfully gapped: 41
Length of query: 363
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 265
Effective length of database: 6,590,910
Effective search space: 1746591150
Effective search space used: 1746591150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (26.7 bits)