RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17848
(363 letters)
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 449 bits (1157), Expect = e-153
Identities = 148/357 (41%), Positives = 203/357 (56%), Gaps = 65/357 (18%)
Query: 8 AIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVG 67
+++++ A+M FG+M+FK ++ +QA A K A L+GL+ ++ K PR+KVG
Sbjct: 348 SMYKLTGAIMHFGNMKFKLKQREEQAEPDGTEEADKSAYLMGLNSADLLKGLCHPRVKVG 407
Query: 68 RDFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIGI 127
++VTK Q +Q V +A A++KA YERMF W+V RIN +L+ TK+ FIG+
Sbjct: 408 NEYVTKGQNVQQ-------VIYATGALAKAVYERMFNWMVTRINATLE-TKQPRQYFIGV 459
Query: 128 LDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFIDFGLDLQP 187
LD+AGFEIF+ NSFEQLCIN+TNEKLQQ FNH MF+LEQEEY++EGIEW FIDFG+DLQ
Sbjct: 460 LDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQA 519
Query: 188 TIDLIDKPMGIMALLDEECWFPKATDRSFVEKLVQSH-SQHAKFKKTDFRGVADFAIVHY 246
IDLI+KPMGIM++L+EEC FPKATD +F KL +H + A F+K
Sbjct: 520 CIDLIEKPMGIMSILEEECMFPKATDMTFKAKLFDNHLGKSANFQKP------------- 566
Query: 247 AGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVD 306
+ K + A F+++HYAG VD
Sbjct: 567 -------------------------------------RNIKG--KPEAHFSLIHYAGIVD 587
Query: 307 YSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIVGMAQQAMSDTQFGARTR 363
Y+ WL KN DPLNE VV L Q S ++ ++ + A + G +
Sbjct: 588 YNIIGWLQKNKDPLNETVVGLYQKSSLKLLSTLFANYA----GADAPIEKGKGKAKK 640
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 452 bits (1166), Expect = e-152
Identities = 193/357 (54%), Positives = 240/357 (67%), Gaps = 60/357 (16%)
Query: 8 AIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVG 67
++ R+VSAV+ FG++ K+ERN+DQA++PDNT AQK+ +LLGL +T+ ++A L PRIKVG
Sbjct: 319 SMLRMVSAVLQFGNIALKRERNTDQATMPDNTAAQKLCRLLGLGVTDFSRALLTPRIKVG 378
Query: 68 RDFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIGI 127
RD+V K+QTKEQ +FA+EA++KA YER+FRWLV R+NR+LDR+ RQGASF+GI
Sbjct: 379 RDYVQKAQTKEQ-------ADFALEALAKATYERLFRWLVLRLNRALDRSPRQGASFLGI 431
Query: 128 LDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFIDFGLDLQP 187
LD+AGFEIF+LNSFEQLCINYTNEKLQQLFNHTMF+LEQEEYQREGI W F+DFGLDLQP
Sbjct: 432 LDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQP 491
Query: 188 TIDLIDKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYA 247
IDLI++P
Sbjct: 492 CIDLIERPA--------------------------------------------------- 500
Query: 248 GKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDF-RGVADFAIVHYAGKVD 306
P G++ALLDEECWFPKATD+SFVEK+ Q H KF++ R ADF+++HYAGKVD
Sbjct: 501 -NPPGLLALLDEECWFPKATDKSFVEKVAQEQGGHPKFQRPRHLRDQADFSVLHYAGKVD 559
Query: 307 YSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIVGMAQQAMSDTQFGARTR 363
Y A +WLMKNMDPLN+NV +LL S D A IWKD E + +Q S R
Sbjct: 560 YKANEWLMKNMDPLNDNVAALLHQSTDRLTAEIWKDVEGIVGLEQVSSLGDGPPGGR 616
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 433 bits (1117), Expect = e-147
Identities = 126/340 (37%), Positives = 182/340 (53%), Gaps = 67/340 (19%)
Query: 7 RAIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKV 66
+IF+I++ ++ G+++F++ + A L D T + + G++ + + KA ++PRI
Sbjct: 342 MSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTALNAASTVFGVNPSVLEKALMEPRILA 400
Query: 67 GRDFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIG 126
GRD V + E+ + +A+ KA Y R+F WLV +IN L + ++ FIG
Sbjct: 401 GRDLVAQHLNVEK-------SSSSRDALVKALYGRLFLWLVKKINNVLCQERKA--YFIG 451
Query: 127 ILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFIDFGLDLQ 186
+LD+ GFEIF++NSFEQLCINYTNEKLQQ FNH MF LEQEEY +E I W FIDFGLD Q
Sbjct: 452 VLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQ 511
Query: 187 PTIDLID--KPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIV 244
TIDLID +P GI+ALLDE+ FP ATD + + KL HS +K
Sbjct: 512 ATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKL---HSHFSK--------------- 553
Query: 245 HYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGK 304
++AK+++ F +F + HYAG+
Sbjct: 554 ------------------------------------KNAKYEEPRFSK-TEFGVTHYAGQ 576
Query: 305 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAE 344
V Y + WL KN DPL +++ + S D V ++ D
Sbjct: 577 VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPN 616
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 434 bits (1118), Expect = e-147
Identities = 147/356 (41%), Positives = 203/356 (57%), Gaps = 57/356 (16%)
Query: 7 RAIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKV 66
+++F+ ++++ G M+FKQ +QA A+K+A L G++ ++ KA LKP++KV
Sbjct: 346 QSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKV 405
Query: 67 GRDFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIG 126
G + VTK Q Q V +V A++K+ Y+RMF WLV R+N++LD TK + +IG
Sbjct: 406 GTEMVTKGQNMNQ-------VVNSVGALAKSLYDRMFNWLVRRVNKTLD-TKAKRNYYIG 457
Query: 127 ILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFIDFGLDLQ 186
+LD+AGFEIF+ NSFEQLCINYTNE+LQQ FNH MFILEQEEY++EGI W+FIDFG+DLQ
Sbjct: 458 VLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQ 517
Query: 187 PTIDLIDKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHY 246
IDLI+KPMGI+++L+EEC FPKA D+SF +KL Q+H +
Sbjct: 518 MCIDLIEKPMGILSILEEECMFPKADDKSFQDKLYQNHMGKNR----------------- 560
Query: 247 AGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVD 306
+G A F + HYAG V
Sbjct: 561 --------------------------------MFTKPGKPTRPNQGPAHFELHHYAGNVP 588
Query: 307 YSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIVGMAQQAMSDTQFGART 362
YS WL KN DP+NENVV+LL S++P VA ++K E + +T
Sbjct: 589 YSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEEPAGGGKKKKGKSSAFQT 644
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 427 bits (1099), Expect = e-144
Identities = 107/355 (30%), Positives = 163/355 (45%), Gaps = 67/355 (18%)
Query: 8 AIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVG 67
IFRI++ ++ G+++F + A P + L+G+ EM ++
Sbjct: 324 GIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATA 383
Query: 68 RDFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIGI 127
+ K +K A +A++K Y +F W+V+ +N++L T +Q SFIG+
Sbjct: 384 TETYIKPISKLH-------AINARDALAKHIYANLFNWIVDHVNKALHSTVKQ-HSFIGV 435
Query: 128 LDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFIDFGLDLQP 187
LD+ GFE FE+NSFEQ CINY NEKLQQ FN +F LEQEEY +E I W IDF D QP
Sbjct: 436 LDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDF-YDNQP 494
Query: 188 TIDLIDKPMGIMALLDEECWFPKATDRSFVEKLVQSH-SQHAKFKKTDFRGVADFAIVHY 246
I+LI+ MG++ LLDEEC PK +D ++ +KL +H ++ A F+K
Sbjct: 495 CINLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKP------------- 541
Query: 247 AGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVD 306
+ F I H+A KV+
Sbjct: 542 -------------------------------------RLSNKAFI------IKHFADKVE 558
Query: 307 YSAEKWLMKNMDPLNENVVSLLQVSQD-PFVAHIWKDAEIVGMAQQAMSDTQFGA 360
Y E +L KN D + E + +L+ S+ + +++D E A +
Sbjct: 559 YQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPL 613
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 432 bits (1112), Expect = e-142
Identities = 190/357 (53%), Positives = 241/357 (67%), Gaps = 60/357 (16%)
Query: 8 AIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVG 67
+I R+VS+V+ G++ FK+ERN+DQAS+PDNT AQK+ L+G+++T+ T++ L PRIKVG
Sbjct: 350 SILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRIKVG 409
Query: 68 RDFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIGI 127
RD V K+QTKEQ +FA+EA++KA +ER+FRW++ R+N++LD+TKRQGASF+GI
Sbjct: 410 RDVVQKAQTKEQ-------ADFAIEALAKAKFERLFRWILTRVNKALDKTKRQGASFLGI 462
Query: 128 LDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFIDFGLDLQP 187
LD+AGFEIFE+NSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEW FIDFGLDLQP
Sbjct: 463 LDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQP 522
Query: 188 TIDLIDKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYA 247
I+LI++P
Sbjct: 523 CIELIERPT--------------------------------------------------- 531
Query: 248 GKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKT-DFRGVADFAIVHYAGKVD 306
P G++ALLDEECWFPKATD SFVEKL+Q HAKF+K+ + +F I+HYAGKV
Sbjct: 532 -NPPGVLALLDEECWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVT 590
Query: 307 YSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIVGMAQQAMSDTQFGARTR 363
Y+A WL KNMDPLN+NV SLL S D FVA +WKD + + Q T+ +
Sbjct: 591 YNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVDRIVGLDQMAKMTESSLPSA 647
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 426 bits (1098), Expect = e-142
Identities = 127/350 (36%), Positives = 187/350 (53%), Gaps = 67/350 (19%)
Query: 7 RAIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKV 66
+IF+I++ ++ G+++F++ + A L D T + + G++ + + KA ++PRI
Sbjct: 342 MSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTALNAASTVFGVNPSVLEKALMEPRILA 400
Query: 67 GRDFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIG 126
GRD V + E+ + +A+ KA Y R+F WLV +IN L ++ FIG
Sbjct: 401 GRDLVAQHLNVEK-------SSSSRDALVKALYGRLFLWLVKKINNVLCSERKA--YFIG 451
Query: 127 ILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFIDFGLDLQ 186
+LD++GFEIF++NSFEQLCINYTNEKLQQ FNH MF +EQEEY +E I W FIDFGLD Q
Sbjct: 452 VLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQ 511
Query: 187 PTIDLID--KPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIV 244
TIDLID +P GI+ALLDE+ FP ATD + + KL HS +K
Sbjct: 512 ATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKL---HSHFSK--------------- 553
Query: 245 HYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGK 304
++AK+++ F +F + HYAG+
Sbjct: 554 ------------------------------------KNAKYEEPRFSK-TEFGVTHYAGQ 576
Query: 305 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAEIVGMAQQAMS 354
V Y + WL KN DPL +++ + S D V ++ D I A++ +
Sbjct: 577 VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGAN 626
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 414 bits (1066), Expect = e-140
Identities = 101/348 (29%), Positives = 159/348 (45%), Gaps = 68/348 (19%)
Query: 6 VRAIFRIVSAVMLFGSMQF----KQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLK 61
+I+RI++A++ G++ F +Q + + D A L ++ A
Sbjct: 263 QNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSIALCY 322
Query: 62 PRIKVGR----DFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRT 117
I G ++ Q ++ +A++KA YER+F WLV++IN ++ T
Sbjct: 323 RSISTGVGKRCSVISVPMDCNQ-------AAYSRDALAKALYERLFNWLVSKINTIINCT 375
Query: 118 KRQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWK 177
+G IGILD+ GFE+F+ NSFEQL IN+ NEKLQQLF EQEEY REGIEWK
Sbjct: 376 TEKG-PVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWK 434
Query: 178 FIDFGLDLQPTIDLID-KPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFR 236
I++ + +P +LI+ KP+G+++LLDE C K+TD++F++ + + ++ +
Sbjct: 435 NIEYF-NNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSICKQFEKNPHLQSY--- 490
Query: 237 GVADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADF 296
K G F
Sbjct: 491 -----------------------------------------------VVSKDRSIGDTCF 503
Query: 297 AIVHYAGKVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAE 344
+ HYAG V Y +L KN D L +++S +Q S DP V ++
Sbjct: 504 RLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQGLFPPTR 551
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 417 bits (1073), Expect = e-137
Identities = 107/356 (30%), Positives = 163/356 (45%), Gaps = 67/356 (18%)
Query: 7 RAIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKV 66
IFRI++ ++ G+++F + A P + L+G+ EM ++
Sbjct: 323 MGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLAT 382
Query: 67 GRDFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFIG 126
+ K +K A +A++K Y +F W+V+ +N++L T +Q SFIG
Sbjct: 383 ATETYIKPISKLH-------AINARDALAKHIYANLFNWIVDHVNKALHSTVKQ-HSFIG 434
Query: 127 ILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFIDFGLDLQ 186
+LD+ GFE FE+NSFEQ CINY NEKLQQ FN +F LEQEEY +E I W IDF D Q
Sbjct: 435 VLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDF-YDNQ 493
Query: 187 PTIDLIDKPMGIMALLDEECWFPKATDRSFVEKLVQSH-SQHAKFKKTDFRGVADFAIVH 245
P I+LI+ MG++ LLDEEC PK +D ++ +KL +H ++ A F+K
Sbjct: 494 PCINLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKP------------ 541
Query: 246 YAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKV 305
+ F I H+A KV
Sbjct: 542 --------------------------------------RLSNKAFI------IKHFADKV 557
Query: 306 DYSAEKWLMKNMDPLNENVVSLLQVSQD-PFVAHIWKDAEIVGMAQQAMSDTQFGA 360
+Y E +L KN D + E + +L+ S+ + +++D E A +
Sbjct: 558 EYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPL 613
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 402 bits (1035), Expect = e-135
Identities = 93/347 (26%), Positives = 153/347 (44%), Gaps = 65/347 (18%)
Query: 7 RAIFRIVSAVMLFGSMQFKQERNSD---QASLPDNTVAQKIAKLLGLSITEMTKAFLK-- 61
+FR+V+ V+ G++ F++ ++ + A+LLGL ++ +
Sbjct: 331 LDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRV 390
Query: 62 ---PRIKVGRDFVTKSQTKEQWFKNDNKVEFAVEAISKACYERMFRWLVNRINRSLDRTK 118
+ EQ A +A++K Y +F +VNR+N+
Sbjct: 391 MLTTAGGAKGTVIKVPLKVEQ-------ANNARDALAKTVYSHLFDHVVNRVNQCFP--F 441
Query: 119 RQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKF 178
+ FIG+LD+AGFE FE NSFEQ CINY NEKLQQ FN + EQE YQ+EG+
Sbjct: 442 ETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNE 501
Query: 179 IDFGLDLQPTIDLID-KPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRG 237
+ + +D Q IDLI+ + +GI+ +LDEE P+ +D+ F + Q H H +
Sbjct: 502 VHY-VDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSI----- 555
Query: 238 VADFAIVHYAGKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFA 297
P+ + + + R F
Sbjct: 556 --------------------------PRKSKLA---------------IHRNIRDDEGFI 574
Query: 298 IVHYAGKVDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHIWKDAE 344
I H+AG V Y +++ KN D L+ ++ SL+ S+D F+ +++ +
Sbjct: 575 IRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESST 621
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 2e-05
Identities = 55/398 (13%), Positives = 124/398 (31%), Gaps = 107/398 (26%)
Query: 26 QERNSDQASLPDNTVAQKIAKLL-------GLSI------TEMTKAF-LKPRIKVGRDFV 71
+ +S L +++ ++ +LL L + + AF L +I +
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL----T 271
Query: 72 TKSQTKEQWFKNDNKVEFAVEAISKACYER----MF-RWLVNRINRSLDRTKRQGASFIG 126
T+ + + +++ S + ++L R L R
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ-DLPREVLTTNPRR- 329
Query: 127 ILDMAGFEIFE-LNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFIDFGLDL 185
L + I + L +++ + +KL + ++ +LE EY++ F +
Sbjct: 330 -LSIIAESIRDGLATWDNW-KHVNCDKLTTIIESSLNVLEPAEYRK-----MFDRLSV-F 381
Query: 186 QPTIDLIDKPMGIMALLDEECWFPKATD-----------RSFVEK--------------- 219
P+ + P +++L+ WF S VEK
Sbjct: 382 PPSAHI---PTILLSLI----WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 220 --------------LVQSHSQHAKFKKTDF-RGVADFAIVHYAGKPMGIMALLDEECWFP 264
+V ++ F D D + G + + + F
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 265 KA-TDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVD-YSAEKWLMKNMDPLNE 322
D F+E K + A +I++ ++ Y + ++ N DP E
Sbjct: 495 MVFLDFRFLE---------QKIRHDSTAWNASGSILNTLQQLKFY--KPYICDN-DPKYE 542
Query: 323 NVVS-----LLQVSQDPFVAHIWKDAEIVGMAQQAMSD 355
+V+ L ++ ++ K +++ + A+
Sbjct: 543 RLVNAILDFLPKIEEN---LICSKYTDLL---RIALMA 574
Score = 35.2 bits (80), Expect = 0.036
Identities = 43/270 (15%), Positives = 75/270 (27%), Gaps = 84/270 (31%)
Query: 3 PPTVRAIFRIVSAVMLFGSMQFKQERNSDQASLPDNTVAQKIAKLLGLSITEMTKAFLKP 62
V R LF ++ KQE V + + ++L + FL
Sbjct: 58 KDAVSGTLR------LFWTLLSKQE----------EMVQKFVEEVL-----RINYKFLMS 96
Query: 63 RIKV-----GRDFVTKSQTKEQWFKNDNKVEFA---------VEAISKACYE-R------ 101
IK + +++ + NDN+V FA + +A E R
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLY-NDNQV-FAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 102 ---MF----RWLVNRINRSLDRTKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQ 154
+ W+ + S + F+IF LN E LQ
Sbjct: 155 IDGVLGSGKTWVALDVCLSYK-----------VQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 155 QLFNHTMFILEQEEYQREGIEWKFIDFGLDLQPTIDLIDKPMGIMALL------DEECWF 208
+L I+ + +L+ L+ LL + + W
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR---RLLKSKPYENCLLVLLNVQNAKAW- 259
Query: 209 PKA----------T-DRSFVEKLVQSHSQH 227
A T + + L + + H
Sbjct: 260 -NAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Score = 28.7 bits (63), Expect = 3.6
Identities = 31/277 (11%), Positives = 84/277 (30%), Gaps = 73/277 (26%)
Query: 123 SFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFN------HTMFILEQEEYQREGIEW 176
+F+ D + + + E++ + T+ + ++E +
Sbjct: 28 AFVDNFDCKDVQDMPKSIL-------SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 177 KFIDFGLDLQPTIDLIDKPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKK---- 232
KF++ L I+ +M+ + E P R ++E+ + ++ + F K
Sbjct: 81 KFVEEVLR-------INYKF-LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 233 -----TDFRGV------ADFAIVH---YAGKP-MGIMALLDE--ECWFP----------K 265
R A ++ +GK + + L +C
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 266 ATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKVDYSAEKWLMKNMDPLNENVV 325
+ + +E L + Q ++ +D + K+ + + ++ +
Sbjct: 193 NSPETVLEMLQKLLYQIDP----NWTSRSDHS---SNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 326 SLLQVSQDPFVAHIWKDAEIVGMAQQAMSDTQFGART 362
LL + ++ +A+ A + +
Sbjct: 246 CLL------VLLNVQ-NAKAW----NAFN---LSCKI 268
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.013
Identities = 46/325 (14%), Positives = 89/325 (27%), Gaps = 130/325 (40%)
Query: 1 MPPPTVRAIFR--------IVSAVMLFGSM---QFKQERNSDQA---------------- 33
P +R+ + +V+AV + + F + +A
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF--FVSVRKAITVLFFIGVRCYEAYP 315
Query: 34 --SLPDNTVAQKIAKLLG-----LSITEMTKAFLKPRIKVGRDFVTKSQTKEQWFKNDNK 86
SLP + + + G LSI+ +T+ ++ + +T +
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN---------KTNSH-LPAGKQ 365
Query: 87 VEFAVEAISKACYERMFRWLVNRINRSLDRTKRQGASFI--G-ILDMAGF-----EIFEL 138
VE IS LVN + + G + G +
Sbjct: 366 VE-----IS----------LVN--------GAKN---LVVSGPPQSLYGLNLTLRKAKAP 399
Query: 139 NSFEQLCINYTNEKL--QQLFN------HTMFILE------QEEYQREGIEWKFIDF--- 181
+ +Q I ++ KL F H+ L ++ + + + D
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVASPFHSHL-LVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 182 ------GLDLQPTIDLIDKPMGIMALLDEEC-WFPKATDRSFVEKLVQSHSQHAKFKKTD 234
G DL+ I + + + ++ W E Q + H
Sbjct: 459 VYDTFDGSDLRVLSGSISERI-VDCIIRLPVKW----------ETTTQFKATH------- 500
Query: 235 FRGVADFAIVHYAGKPMGIMALLDE 259
+ DF G G+ L
Sbjct: 501 ---ILDFG----PGGASGLGVLTHR 518
Score = 31.9 bits (72), Expect = 0.37
Identities = 57/372 (15%), Positives = 105/372 (28%), Gaps = 122/372 (32%)
Query: 48 LGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQWFKNDNKV--EFAV--EAISKACYERMF 103
L LS + L P F SQ +EQ+ K + FA E + A E
Sbjct: 9 LTLSHGSLEHVLLVPT----ASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA--E--- 59
Query: 104 RWLVNR----INRSLDRTKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFN- 158
LV + ++ ++ + + F +L++ L FE Y L+ N
Sbjct: 60 --LVGKFLGYVSSLVEPS--KVGQFDQVLNLC------LTEFEN---CY----LEG--ND 100
Query: 159 -HTM---FILEQEEYQREGIEW--------KFIDFGLDLQPTIDLI----DKPMGIMALL 202
H + + E + + E D + L + ++A+
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 203 ----DEECWFPK-----ATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKPMGI 253
+ + +F + T V L++ ++ R D V G + I
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL---SELIRTTLDAEKVFTQG--LNI 215
Query: 254 MALLDEECWFPKATDRSFVEK---------LVQSHSQHAKFKKTDFRGVADFAIVHYAGK 304
+ L+ P D+ ++ ++Q + HY
Sbjct: 216 LEWLENPSNTP---DKDYLLSIPISCPLIGVIQ--------------------LAHY--- 249
Query: 305 VDYSAEKWLMKNMDPLNENVVSLLQVSQDPFVAHI------WKDAE-----------IVG 347
K L L + SQ A W+ +G
Sbjct: 250 --VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 348 M-AQQAMSDTQF 358
+ +A +T
Sbjct: 308 VRCYEAYPNTSL 319
Score = 28.5 bits (63), Expect = 5.2
Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 33/108 (30%)
Query: 8 AIFRIV-----SAVMLFGSMQFKQERNSDQA----SLPD-NTVAQKIAKLLGLSITEMTK 57
+I IV + + FG + K+ R + A ++ D +KI K + T T
Sbjct: 1660 SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT- 1718
Query: 58 AFLKPRIKVGRDFVTKSQTKEQWFKNDNKVEF---AVEAISKACYERM 102
F + + S T +F A+ + KA +E +
Sbjct: 1719 -FRSEKGLL-------SAT-----------QFTQPALTLMEKAAFEDL 1747
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.135 0.404
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,481,161
Number of extensions: 319773
Number of successful extensions: 761
Number of sequences better than 10.0: 1
Number of HSP's gapped: 708
Number of HSP's successfully gapped: 33
Length of query: 363
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 268
Effective length of database: 4,049,298
Effective search space: 1085211864
Effective search space used: 1085211864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.1 bits)